Multiple sequence alignment - TraesCS7D01G418000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G418000 chr7D 100.000 3919 0 0 1 3919 537333009 537329091 0.000000e+00 7238
1 TraesCS7D01G418000 chr7D 86.417 508 53 8 3004 3498 536976050 536975546 3.440000e-150 542
2 TraesCS7D01G418000 chr7D 80.568 669 83 23 1178 1813 536977840 536977186 4.580000e-129 472
3 TraesCS7D01G418000 chr2B 95.553 1709 62 9 1094 2791 70851459 70849754 0.000000e+00 2723
4 TraesCS7D01G418000 chr2B 95.844 1636 64 3 1128 2760 520183818 520185452 0.000000e+00 2641
5 TraesCS7D01G418000 chr2B 96.483 1052 31 4 2760 3808 520197093 520198141 0.000000e+00 1733
6 TraesCS7D01G418000 chr2B 96.280 914 30 2 2788 3698 70849673 70848761 0.000000e+00 1496
7 TraesCS7D01G418000 chr2B 78.861 1580 220 47 1125 2642 58785553 58787080 0.000000e+00 963
8 TraesCS7D01G418000 chr2B 77.410 1722 248 68 1436 3111 61602939 61601313 0.000000e+00 894
9 TraesCS7D01G418000 chr2B 80.892 874 124 23 2644 3498 71231663 71232512 0.000000e+00 649
10 TraesCS7D01G418000 chr2B 86.785 507 51 8 3004 3497 520920654 520921157 5.720000e-153 551
11 TraesCS7D01G418000 chr2B 81.250 736 89 24 1112 1813 71230106 71230826 2.060000e-152 549
12 TraesCS7D01G418000 chr2B 81.145 716 88 22 1131 1813 520918815 520919516 7.460000e-147 531
13 TraesCS7D01G418000 chr2B 79.263 733 107 19 1125 1813 58777817 58778548 1.650000e-128 470
14 TraesCS7D01G418000 chr2B 88.611 360 27 7 3520 3875 520934252 520934601 3.620000e-115 425
15 TraesCS7D01G418000 chr2B 91.901 284 19 4 446 728 520182761 520183041 1.020000e-105 394
16 TraesCS7D01G418000 chr2B 77.415 673 97 31 1174 1808 57152127 57151472 2.240000e-92 350
17 TraesCS7D01G418000 chr2B 96.133 181 7 0 3628 3808 519694635 519694455 2.960000e-76 296
18 TraesCS7D01G418000 chr2B 92.537 201 5 6 714 910 520183097 520183291 2.980000e-71 279
19 TraesCS7D01G418000 chr2B 83.278 299 48 2 1125 1422 57141601 57141898 1.390000e-69 274
20 TraesCS7D01G418000 chr2B 85.091 275 20 9 3605 3875 71235828 71236085 1.080000e-65 261
21 TraesCS7D01G418000 chr2B 88.832 197 6 6 923 1118 520918273 520918454 1.100000e-55 228
22 TraesCS7D01G418000 chr2B 96.875 128 4 0 3792 3919 520199506 520199633 8.530000e-52 215
23 TraesCS7D01G418000 chr2B 90.845 142 12 1 3520 3660 71235686 71235827 5.170000e-44 189
24 TraesCS7D01G418000 chr2B 90.226 133 10 3 951 1082 71229393 71229523 1.870000e-38 171
25 TraesCS7D01G418000 chr2B 96.552 87 3 0 963 1049 70851516 70851430 1.130000e-30 145
26 TraesCS7D01G418000 chr2A 85.185 1269 141 20 1517 2772 39233541 39232307 0.000000e+00 1258
27 TraesCS7D01G418000 chr2A 87.352 506 46 9 3004 3496 48322459 48322959 7.350000e-157 564
28 TraesCS7D01G418000 chr2A 89.462 446 40 7 6 449 757221348 757221788 1.230000e-154 556
29 TraesCS7D01G418000 chr2A 89.189 444 44 4 7 449 399064937 399064497 5.720000e-153 551
30 TraesCS7D01G418000 chr2A 88.432 389 31 7 3491 3875 48327219 48327597 1.280000e-124 457
31 TraesCS7D01G418000 chr2A 96.296 81 3 0 948 1028 48303519 48303599 2.460000e-27 134
32 TraesCS7D01G418000 chr3D 77.458 1943 279 84 1233 3111 380177779 380175932 0.000000e+00 1014
33 TraesCS7D01G418000 chr3D 90.667 450 39 3 1 449 603226456 603226903 2.610000e-166 595
34 TraesCS7D01G418000 chr3D 80.247 729 104 16 1125 1813 380306776 380307504 2.700000e-141 512
35 TraesCS7D01G418000 chr2D 90.423 449 38 4 1 449 307169514 307169071 1.570000e-163 586
36 TraesCS7D01G418000 chr2D 89.579 451 39 6 1 449 157253704 157253260 2.040000e-157 566
37 TraesCS7D01G418000 chr2D 89.509 448 44 2 1 448 331060670 331061114 7.350000e-157 564
38 TraesCS7D01G418000 chr2D 76.523 673 73 45 2645 3293 35539046 35539657 4.950000e-74 289
39 TraesCS7D01G418000 chr1D 90.200 449 41 2 1 449 308320878 308320433 2.030000e-162 582
40 TraesCS7D01G418000 chr1D 79.462 706 108 18 1125 1811 56750280 56750967 2.130000e-127 466
41 TraesCS7D01G418000 chr1D 76.936 581 61 32 2702 3271 56751822 56752340 3.000000e-66 263
42 TraesCS7D01G418000 chr5D 89.978 449 42 2 1 449 197187960 197188405 9.440000e-161 577
43 TraesCS7D01G418000 chr6A 89.087 449 45 4 2 449 156737264 156737709 4.420000e-154 555


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G418000 chr7D 537329091 537333009 3918 True 7238.000000 7238 100.000000 1 3919 1 chr7D.!!$R1 3918
1 TraesCS7D01G418000 chr7D 536975546 536977840 2294 True 507.000000 542 83.492500 1178 3498 2 chr7D.!!$R2 2320
2 TraesCS7D01G418000 chr2B 70848761 70851516 2755 True 1454.666667 2723 96.128333 963 3698 3 chr2B.!!$R4 2735
3 TraesCS7D01G418000 chr2B 520182761 520185452 2691 False 1104.666667 2641 93.427333 446 2760 3 chr2B.!!$F6 2314
4 TraesCS7D01G418000 chr2B 520197093 520199633 2540 False 974.000000 1733 96.679000 2760 3919 2 chr2B.!!$F7 1159
5 TraesCS7D01G418000 chr2B 58785553 58787080 1527 False 963.000000 963 78.861000 1125 2642 1 chr2B.!!$F3 1517
6 TraesCS7D01G418000 chr2B 61601313 61602939 1626 True 894.000000 894 77.410000 1436 3111 1 chr2B.!!$R2 1675
7 TraesCS7D01G418000 chr2B 58777817 58778548 731 False 470.000000 470 79.263000 1125 1813 1 chr2B.!!$F2 688
8 TraesCS7D01G418000 chr2B 520918273 520921157 2884 False 436.666667 551 85.587333 923 3497 3 chr2B.!!$F8 2574
9 TraesCS7D01G418000 chr2B 71229393 71236085 6692 False 363.800000 649 85.660800 951 3875 5 chr2B.!!$F5 2924
10 TraesCS7D01G418000 chr2B 57151472 57152127 655 True 350.000000 350 77.415000 1174 1808 1 chr2B.!!$R1 634
11 TraesCS7D01G418000 chr2A 39232307 39233541 1234 True 1258.000000 1258 85.185000 1517 2772 1 chr2A.!!$R1 1255
12 TraesCS7D01G418000 chr2A 48322459 48322959 500 False 564.000000 564 87.352000 3004 3496 1 chr2A.!!$F2 492
13 TraesCS7D01G418000 chr3D 380175932 380177779 1847 True 1014.000000 1014 77.458000 1233 3111 1 chr3D.!!$R1 1878
14 TraesCS7D01G418000 chr3D 380306776 380307504 728 False 512.000000 512 80.247000 1125 1813 1 chr3D.!!$F1 688
15 TraesCS7D01G418000 chr2D 35539046 35539657 611 False 289.000000 289 76.523000 2645 3293 1 chr2D.!!$F1 648
16 TraesCS7D01G418000 chr1D 56750280 56752340 2060 False 364.500000 466 78.199000 1125 3271 2 chr1D.!!$F1 2146

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
912 987 0.032515 TGCCGTCCCCTCTCTATTGA 60.033 55.000 0.00 0.00 0.0 2.57 F
1872 2955 0.110688 CATTGGCCGATTATGACGCG 60.111 55.000 3.53 3.53 0.0 6.01 F
2378 3650 2.575735 TGGAAGTCATCAAGCCATACCA 59.424 45.455 0.00 0.00 0.0 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2611 3905 1.472878 CTGCTGCAACTTGCTCATCAT 59.527 47.619 14.78 0.0 45.31 2.45 R
2890 4313 1.950909 GGTAGCTGCTGATAGTCGTCT 59.049 52.381 13.43 0.0 0.00 4.18 R
3357 4840 3.189287 CCTTATGCCATAAGCCGCTAAAG 59.811 47.826 17.31 0.0 42.71 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.288426 GATCGGTTAAAGATGTTCTAAGCC 57.712 41.667 0.03 0.00 0.00 4.35
24 25 5.416271 TCGGTTAAAGATGTTCTAAGCCT 57.584 39.130 0.00 0.00 0.00 4.58
25 26 5.416947 TCGGTTAAAGATGTTCTAAGCCTC 58.583 41.667 0.00 0.00 0.00 4.70
26 27 4.267928 CGGTTAAAGATGTTCTAAGCCTCG 59.732 45.833 0.00 0.00 0.00 4.63
27 28 5.176592 GGTTAAAGATGTTCTAAGCCTCGT 58.823 41.667 0.00 0.00 0.00 4.18
28 29 5.063564 GGTTAAAGATGTTCTAAGCCTCGTG 59.936 44.000 0.00 0.00 0.00 4.35
29 30 3.963428 AAGATGTTCTAAGCCTCGTGT 57.037 42.857 0.00 0.00 0.00 4.49
30 31 3.238108 AGATGTTCTAAGCCTCGTGTG 57.762 47.619 0.00 0.00 0.00 3.82
31 32 2.826128 AGATGTTCTAAGCCTCGTGTGA 59.174 45.455 0.00 0.00 0.00 3.58
32 33 3.258372 AGATGTTCTAAGCCTCGTGTGAA 59.742 43.478 0.00 0.00 0.00 3.18
33 34 3.462483 TGTTCTAAGCCTCGTGTGAAA 57.538 42.857 0.00 0.00 0.00 2.69
34 35 4.002906 TGTTCTAAGCCTCGTGTGAAAT 57.997 40.909 0.00 0.00 0.00 2.17
35 36 4.385825 TGTTCTAAGCCTCGTGTGAAATT 58.614 39.130 0.00 0.00 0.00 1.82
36 37 5.543714 TGTTCTAAGCCTCGTGTGAAATTA 58.456 37.500 0.00 0.00 0.00 1.40
37 38 5.992829 TGTTCTAAGCCTCGTGTGAAATTAA 59.007 36.000 0.00 0.00 0.00 1.40
38 39 6.653320 TGTTCTAAGCCTCGTGTGAAATTAAT 59.347 34.615 0.00 0.00 0.00 1.40
39 40 6.662414 TCTAAGCCTCGTGTGAAATTAATG 57.338 37.500 0.00 0.00 0.00 1.90
40 41 6.170506 TCTAAGCCTCGTGTGAAATTAATGT 58.829 36.000 0.00 0.00 0.00 2.71
41 42 7.324935 TCTAAGCCTCGTGTGAAATTAATGTA 58.675 34.615 0.00 0.00 0.00 2.29
42 43 6.422776 AAGCCTCGTGTGAAATTAATGTAG 57.577 37.500 0.00 0.00 0.00 2.74
43 44 5.730550 AGCCTCGTGTGAAATTAATGTAGA 58.269 37.500 0.00 0.00 0.00 2.59
44 45 6.170506 AGCCTCGTGTGAAATTAATGTAGAA 58.829 36.000 0.00 0.00 0.00 2.10
45 46 6.823689 AGCCTCGTGTGAAATTAATGTAGAAT 59.176 34.615 0.00 0.00 0.00 2.40
46 47 6.907212 GCCTCGTGTGAAATTAATGTAGAATG 59.093 38.462 0.00 0.00 0.00 2.67
47 48 7.201609 GCCTCGTGTGAAATTAATGTAGAATGA 60.202 37.037 0.00 0.00 0.00 2.57
48 49 8.116753 CCTCGTGTGAAATTAATGTAGAATGAC 58.883 37.037 0.00 0.00 0.00 3.06
49 50 7.671827 TCGTGTGAAATTAATGTAGAATGACG 58.328 34.615 0.00 0.00 0.00 4.35
50 51 7.329962 TCGTGTGAAATTAATGTAGAATGACGT 59.670 33.333 0.00 0.00 0.00 4.34
51 52 7.630987 CGTGTGAAATTAATGTAGAATGACGTC 59.369 37.037 9.11 9.11 0.00 4.34
52 53 8.440059 GTGTGAAATTAATGTAGAATGACGTCA 58.560 33.333 22.48 22.48 0.00 4.35
53 54 9.161629 TGTGAAATTAATGTAGAATGACGTCAT 57.838 29.630 25.18 25.18 38.41 3.06
54 55 9.425893 GTGAAATTAATGTAGAATGACGTCATG 57.574 33.333 30.57 0.00 36.56 3.07
55 56 9.377312 TGAAATTAATGTAGAATGACGTCATGA 57.623 29.630 30.57 16.57 36.56 3.07
58 59 7.713764 TTAATGTAGAATGACGTCATGATGG 57.286 36.000 30.57 7.47 36.56 3.51
59 60 4.736126 TGTAGAATGACGTCATGATGGT 57.264 40.909 30.57 15.39 36.56 3.55
60 61 5.084818 TGTAGAATGACGTCATGATGGTT 57.915 39.130 30.57 15.38 36.56 3.67
61 62 5.487433 TGTAGAATGACGTCATGATGGTTT 58.513 37.500 30.57 14.62 36.56 3.27
62 63 6.635755 TGTAGAATGACGTCATGATGGTTTA 58.364 36.000 30.57 11.88 36.56 2.01
63 64 7.100409 TGTAGAATGACGTCATGATGGTTTAA 58.900 34.615 30.57 8.74 36.56 1.52
64 65 6.668541 AGAATGACGTCATGATGGTTTAAG 57.331 37.500 30.57 0.00 36.56 1.85
65 66 6.406370 AGAATGACGTCATGATGGTTTAAGA 58.594 36.000 30.57 0.00 36.56 2.10
66 67 6.878923 AGAATGACGTCATGATGGTTTAAGAA 59.121 34.615 30.57 0.00 36.56 2.52
67 68 7.390440 AGAATGACGTCATGATGGTTTAAGAAA 59.610 33.333 30.57 0.00 36.56 2.52
68 69 6.480524 TGACGTCATGATGGTTTAAGAAAG 57.519 37.500 15.76 0.00 0.00 2.62
69 70 5.995282 TGACGTCATGATGGTTTAAGAAAGT 59.005 36.000 15.76 0.00 0.00 2.66
70 71 6.485313 TGACGTCATGATGGTTTAAGAAAGTT 59.515 34.615 15.76 0.00 0.00 2.66
71 72 6.899114 ACGTCATGATGGTTTAAGAAAGTTC 58.101 36.000 18.97 0.00 0.00 3.01
72 73 6.710744 ACGTCATGATGGTTTAAGAAAGTTCT 59.289 34.615 18.97 0.00 39.74 3.01
73 74 7.017645 CGTCATGATGGTTTAAGAAAGTTCTG 58.982 38.462 7.06 0.00 37.65 3.02
74 75 6.803807 GTCATGATGGTTTAAGAAAGTTCTGC 59.196 38.462 0.00 0.00 37.65 4.26
75 76 5.356882 TGATGGTTTAAGAAAGTTCTGCG 57.643 39.130 0.00 0.00 37.65 5.18
76 77 5.060506 TGATGGTTTAAGAAAGTTCTGCGA 58.939 37.500 0.00 0.00 37.65 5.10
77 78 5.179368 TGATGGTTTAAGAAAGTTCTGCGAG 59.821 40.000 0.00 0.00 37.65 5.03
78 79 3.250040 TGGTTTAAGAAAGTTCTGCGAGC 59.750 43.478 0.00 0.00 37.65 5.03
79 80 3.498777 GGTTTAAGAAAGTTCTGCGAGCT 59.501 43.478 0.00 0.00 37.65 4.09
80 81 4.458708 GTTTAAGAAAGTTCTGCGAGCTG 58.541 43.478 0.00 0.00 37.65 4.24
81 82 2.533266 AAGAAAGTTCTGCGAGCTGA 57.467 45.000 0.00 0.45 37.65 4.26
82 83 1.789506 AGAAAGTTCTGCGAGCTGAC 58.210 50.000 4.15 1.41 35.89 3.51
83 84 0.436531 GAAAGTTCTGCGAGCTGACG 59.563 55.000 4.15 0.00 0.00 4.35
84 85 0.249489 AAAGTTCTGCGAGCTGACGT 60.249 50.000 4.15 0.00 35.59 4.34
85 86 0.664767 AAGTTCTGCGAGCTGACGTC 60.665 55.000 9.11 9.11 35.59 4.34
86 87 1.371758 GTTCTGCGAGCTGACGTCA 60.372 57.895 18.88 18.88 35.59 4.35
87 88 0.734253 GTTCTGCGAGCTGACGTCAT 60.734 55.000 20.40 4.74 35.59 3.06
88 89 0.733909 TTCTGCGAGCTGACGTCATG 60.734 55.000 20.40 14.04 35.59 3.07
89 90 2.125952 TGCGAGCTGACGTCATGG 60.126 61.111 20.40 9.72 35.59 3.66
90 91 3.558411 GCGAGCTGACGTCATGGC 61.558 66.667 20.40 19.65 35.59 4.40
91 92 3.250323 CGAGCTGACGTCATGGCG 61.250 66.667 20.40 19.93 37.94 5.69
92 93 2.887568 GAGCTGACGTCATGGCGG 60.888 66.667 25.37 8.11 35.98 6.13
93 94 3.649277 GAGCTGACGTCATGGCGGT 62.649 63.158 25.37 12.92 35.98 5.68
94 95 2.742372 GCTGACGTCATGGCGGTT 60.742 61.111 25.37 2.99 35.98 4.44
95 96 2.325082 GCTGACGTCATGGCGGTTT 61.325 57.895 25.37 2.10 35.98 3.27
96 97 1.017177 GCTGACGTCATGGCGGTTTA 61.017 55.000 25.37 5.99 35.98 2.01
97 98 1.651987 CTGACGTCATGGCGGTTTAT 58.348 50.000 25.37 1.19 35.98 1.40
98 99 2.816689 CTGACGTCATGGCGGTTTATA 58.183 47.619 25.37 2.35 35.98 0.98
99 100 2.794910 CTGACGTCATGGCGGTTTATAG 59.205 50.000 25.37 8.49 35.98 1.31
100 101 1.525619 GACGTCATGGCGGTTTATAGC 59.474 52.381 25.37 0.00 35.98 2.97
101 102 1.134640 ACGTCATGGCGGTTTATAGCA 60.135 47.619 25.37 0.00 35.98 3.49
102 103 1.937223 CGTCATGGCGGTTTATAGCAA 59.063 47.619 12.98 0.00 34.54 3.91
103 104 2.032894 CGTCATGGCGGTTTATAGCAAG 60.033 50.000 12.98 0.00 34.54 4.01
104 105 2.290641 GTCATGGCGGTTTATAGCAAGG 59.709 50.000 0.00 0.00 34.54 3.61
105 106 2.092646 TCATGGCGGTTTATAGCAAGGT 60.093 45.455 0.00 0.00 34.54 3.50
106 107 2.500392 TGGCGGTTTATAGCAAGGTT 57.500 45.000 0.00 0.00 34.54 3.50
107 108 2.797786 TGGCGGTTTATAGCAAGGTTT 58.202 42.857 0.00 0.00 34.54 3.27
108 109 3.952931 TGGCGGTTTATAGCAAGGTTTA 58.047 40.909 0.00 0.00 34.54 2.01
109 110 4.528920 TGGCGGTTTATAGCAAGGTTTAT 58.471 39.130 0.00 0.00 34.54 1.40
110 111 4.577283 TGGCGGTTTATAGCAAGGTTTATC 59.423 41.667 0.00 0.00 34.54 1.75
111 112 4.577283 GGCGGTTTATAGCAAGGTTTATCA 59.423 41.667 0.00 0.00 34.54 2.15
112 113 5.066764 GGCGGTTTATAGCAAGGTTTATCAA 59.933 40.000 0.00 0.00 34.54 2.57
113 114 6.404954 GGCGGTTTATAGCAAGGTTTATCAAA 60.405 38.462 0.00 0.00 34.54 2.69
114 115 6.471198 GCGGTTTATAGCAAGGTTTATCAAAC 59.529 38.462 0.00 0.00 40.65 2.93
115 116 7.531716 CGGTTTATAGCAAGGTTTATCAAACA 58.468 34.615 4.35 0.00 43.15 2.83
116 117 8.024285 CGGTTTATAGCAAGGTTTATCAAACAA 58.976 33.333 4.35 0.00 43.15 2.83
117 118 9.699703 GGTTTATAGCAAGGTTTATCAAACAAA 57.300 29.630 4.35 0.00 43.15 2.83
119 120 9.921637 TTTATAGCAAGGTTTATCAAACAAAGG 57.078 29.630 4.35 0.00 43.15 3.11
120 121 4.631131 AGCAAGGTTTATCAAACAAAGGC 58.369 39.130 4.35 2.63 43.15 4.35
121 122 3.428534 GCAAGGTTTATCAAACAAAGGCG 59.571 43.478 4.35 0.00 43.15 5.52
122 123 4.794655 GCAAGGTTTATCAAACAAAGGCGA 60.795 41.667 4.35 0.00 43.15 5.54
123 124 5.469479 CAAGGTTTATCAAACAAAGGCGAT 58.531 37.500 4.35 0.00 43.15 4.58
124 125 5.059404 AGGTTTATCAAACAAAGGCGATG 57.941 39.130 4.35 0.00 43.15 3.84
125 126 3.612423 GGTTTATCAAACAAAGGCGATGC 59.388 43.478 4.35 0.00 43.15 3.91
126 127 4.233789 GTTTATCAAACAAAGGCGATGCA 58.766 39.130 0.00 0.00 41.04 3.96
127 128 4.511617 TTATCAAACAAAGGCGATGCAA 57.488 36.364 0.00 0.00 0.00 4.08
128 129 2.420628 TCAAACAAAGGCGATGCAAG 57.579 45.000 0.00 0.00 0.00 4.01
129 130 1.952990 TCAAACAAAGGCGATGCAAGA 59.047 42.857 0.00 0.00 0.00 3.02
130 131 2.557924 TCAAACAAAGGCGATGCAAGAT 59.442 40.909 0.00 0.00 0.00 2.40
131 132 3.005684 TCAAACAAAGGCGATGCAAGATT 59.994 39.130 0.00 0.00 0.00 2.40
132 133 3.665745 AACAAAGGCGATGCAAGATTT 57.334 38.095 0.00 0.00 0.00 2.17
133 134 3.665745 ACAAAGGCGATGCAAGATTTT 57.334 38.095 0.00 0.00 0.00 1.82
134 135 3.319755 ACAAAGGCGATGCAAGATTTTG 58.680 40.909 0.00 5.70 37.36 2.44
135 136 3.005684 ACAAAGGCGATGCAAGATTTTGA 59.994 39.130 19.05 0.00 36.36 2.69
136 137 2.927553 AGGCGATGCAAGATTTTGAC 57.072 45.000 0.00 0.00 36.36 3.18
137 138 2.161855 AGGCGATGCAAGATTTTGACA 58.838 42.857 0.00 0.00 36.36 3.58
138 139 2.557924 AGGCGATGCAAGATTTTGACAA 59.442 40.909 0.00 0.00 36.36 3.18
139 140 2.919229 GGCGATGCAAGATTTTGACAAG 59.081 45.455 0.00 0.00 36.36 3.16
140 141 3.568538 GCGATGCAAGATTTTGACAAGT 58.431 40.909 0.00 0.00 36.36 3.16
141 142 3.605486 GCGATGCAAGATTTTGACAAGTC 59.395 43.478 0.00 0.00 36.36 3.01
142 143 4.786507 CGATGCAAGATTTTGACAAGTCA 58.213 39.130 0.00 0.00 36.36 3.41
143 144 4.849926 CGATGCAAGATTTTGACAAGTCAG 59.150 41.667 0.00 0.00 41.13 3.51
144 145 4.572985 TGCAAGATTTTGACAAGTCAGG 57.427 40.909 0.00 0.04 41.13 3.86
145 146 3.953612 TGCAAGATTTTGACAAGTCAGGT 59.046 39.130 0.00 0.00 41.13 4.00
146 147 5.129634 TGCAAGATTTTGACAAGTCAGGTA 58.870 37.500 0.00 0.00 41.13 3.08
147 148 5.769662 TGCAAGATTTTGACAAGTCAGGTAT 59.230 36.000 0.00 0.00 41.13 2.73
148 149 6.265196 TGCAAGATTTTGACAAGTCAGGTATT 59.735 34.615 0.00 0.00 41.13 1.89
149 150 6.583806 GCAAGATTTTGACAAGTCAGGTATTG 59.416 38.462 0.00 8.23 41.13 1.90
150 151 7.522073 GCAAGATTTTGACAAGTCAGGTATTGA 60.522 37.037 16.06 0.00 41.13 2.57
151 152 8.352201 CAAGATTTTGACAAGTCAGGTATTGAA 58.648 33.333 2.87 0.00 41.13 2.69
152 153 8.103948 AGATTTTGACAAGTCAGGTATTGAAG 57.896 34.615 2.87 0.00 41.13 3.02
153 154 7.939039 AGATTTTGACAAGTCAGGTATTGAAGA 59.061 33.333 2.87 0.00 41.13 2.87
154 155 8.641498 ATTTTGACAAGTCAGGTATTGAAGAT 57.359 30.769 2.87 0.00 41.13 2.40
155 156 8.463930 TTTTGACAAGTCAGGTATTGAAGATT 57.536 30.769 2.87 0.00 41.13 2.40
156 157 7.439157 TTGACAAGTCAGGTATTGAAGATTG 57.561 36.000 2.87 0.00 41.13 2.67
157 158 6.768483 TGACAAGTCAGGTATTGAAGATTGA 58.232 36.000 0.00 0.00 37.61 2.57
158 159 7.397221 TGACAAGTCAGGTATTGAAGATTGAT 58.603 34.615 0.00 0.00 37.61 2.57
159 160 8.539544 TGACAAGTCAGGTATTGAAGATTGATA 58.460 33.333 0.00 0.00 37.61 2.15
160 161 9.553064 GACAAGTCAGGTATTGAAGATTGATAT 57.447 33.333 0.00 0.00 37.61 1.63
161 162 9.334947 ACAAGTCAGGTATTGAAGATTGATATG 57.665 33.333 0.00 0.00 37.61 1.78
162 163 9.551734 CAAGTCAGGTATTGAAGATTGATATGA 57.448 33.333 0.00 0.00 37.61 2.15
164 165 9.553064 AGTCAGGTATTGAAGATTGATATGAAC 57.447 33.333 0.00 0.00 37.61 3.18
165 166 9.330063 GTCAGGTATTGAAGATTGATATGAACA 57.670 33.333 0.00 0.00 37.61 3.18
166 167 9.904198 TCAGGTATTGAAGATTGATATGAACAA 57.096 29.630 0.00 0.00 31.34 2.83
168 169 9.911788 AGGTATTGAAGATTGATATGAACAAGT 57.088 29.630 0.00 0.00 0.00 3.16
182 183 5.261209 TGAACAAGTTCAAATCAACCTGG 57.739 39.130 12.85 0.00 45.56 4.45
183 184 4.099266 TGAACAAGTTCAAATCAACCTGGG 59.901 41.667 12.85 0.00 45.56 4.45
184 185 2.965147 ACAAGTTCAAATCAACCTGGGG 59.035 45.455 0.00 0.00 0.00 4.96
185 186 1.632589 AGTTCAAATCAACCTGGGGC 58.367 50.000 0.00 0.00 0.00 5.80
186 187 0.608130 GTTCAAATCAACCTGGGGCC 59.392 55.000 0.00 0.00 0.00 5.80
187 188 0.486879 TTCAAATCAACCTGGGGCCT 59.513 50.000 0.84 0.00 0.00 5.19
188 189 1.377690 TCAAATCAACCTGGGGCCTA 58.622 50.000 0.84 0.00 0.00 3.93
189 190 1.713647 TCAAATCAACCTGGGGCCTAA 59.286 47.619 0.84 0.00 0.00 2.69
190 191 2.314549 TCAAATCAACCTGGGGCCTAAT 59.685 45.455 0.84 0.00 0.00 1.73
191 192 2.431782 CAAATCAACCTGGGGCCTAATG 59.568 50.000 0.84 0.00 0.00 1.90
192 193 1.308877 ATCAACCTGGGGCCTAATGT 58.691 50.000 0.84 0.00 0.00 2.71
193 194 1.080638 TCAACCTGGGGCCTAATGTT 58.919 50.000 0.84 0.51 0.00 2.71
194 195 1.185315 CAACCTGGGGCCTAATGTTG 58.815 55.000 14.63 14.63 0.00 3.33
195 196 0.041090 AACCTGGGGCCTAATGTTGG 59.959 55.000 0.84 0.00 0.00 3.77
196 197 1.076044 CCTGGGGCCTAATGTTGGG 60.076 63.158 0.84 0.00 0.00 4.12
197 198 1.076044 CTGGGGCCTAATGTTGGGG 60.076 63.158 0.84 0.00 0.00 4.96
198 199 1.545173 TGGGGCCTAATGTTGGGGA 60.545 57.895 0.84 0.00 0.00 4.81
199 200 0.928726 TGGGGCCTAATGTTGGGGAT 60.929 55.000 0.84 0.00 0.00 3.85
200 201 1.154430 GGGGCCTAATGTTGGGGATA 58.846 55.000 0.84 0.00 0.00 2.59
201 202 1.716503 GGGGCCTAATGTTGGGGATAT 59.283 52.381 0.84 0.00 0.00 1.63
202 203 2.923629 GGGGCCTAATGTTGGGGATATA 59.076 50.000 0.84 0.00 0.00 0.86
203 204 3.335484 GGGGCCTAATGTTGGGGATATAA 59.665 47.826 0.84 0.00 0.00 0.98
204 205 4.341487 GGGCCTAATGTTGGGGATATAAC 58.659 47.826 0.84 0.00 0.00 1.89
205 206 4.044191 GGGCCTAATGTTGGGGATATAACT 59.956 45.833 0.84 0.00 0.00 2.24
206 207 5.252164 GGGCCTAATGTTGGGGATATAACTA 59.748 44.000 0.84 0.00 0.00 2.24
207 208 6.069029 GGGCCTAATGTTGGGGATATAACTAT 60.069 42.308 0.84 0.00 0.00 2.12
208 209 7.410991 GGCCTAATGTTGGGGATATAACTATT 58.589 38.462 0.00 0.00 0.00 1.73
209 210 7.339466 GGCCTAATGTTGGGGATATAACTATTG 59.661 40.741 0.00 0.00 0.00 1.90
210 211 7.339466 GCCTAATGTTGGGGATATAACTATTGG 59.661 40.741 0.00 0.00 0.00 3.16
211 212 7.834181 CCTAATGTTGGGGATATAACTATTGGG 59.166 40.741 0.00 0.00 0.00 4.12
212 213 6.796867 ATGTTGGGGATATAACTATTGGGT 57.203 37.500 0.00 0.00 0.00 4.51
213 214 7.898470 ATGTTGGGGATATAACTATTGGGTA 57.102 36.000 0.00 0.00 0.00 3.69
214 215 7.898470 TGTTGGGGATATAACTATTGGGTAT 57.102 36.000 0.00 0.00 0.00 2.73
215 216 7.695055 TGTTGGGGATATAACTATTGGGTATG 58.305 38.462 0.00 0.00 0.00 2.39
216 217 7.517953 TGTTGGGGATATAACTATTGGGTATGA 59.482 37.037 0.00 0.00 0.00 2.15
217 218 8.387813 GTTGGGGATATAACTATTGGGTATGAA 58.612 37.037 0.00 0.00 0.00 2.57
218 219 7.924541 TGGGGATATAACTATTGGGTATGAAC 58.075 38.462 0.00 0.00 0.00 3.18
219 220 7.742213 TGGGGATATAACTATTGGGTATGAACT 59.258 37.037 0.00 0.00 0.00 3.01
220 221 8.047310 GGGGATATAACTATTGGGTATGAACTG 58.953 40.741 0.00 0.00 0.00 3.16
221 222 7.553044 GGGATATAACTATTGGGTATGAACTGC 59.447 40.741 0.00 0.00 0.00 4.40
222 223 7.553044 GGATATAACTATTGGGTATGAACTGCC 59.447 40.741 0.00 0.00 0.00 4.85
228 229 3.788672 GGTATGAACTGCCCAGGAG 57.211 57.895 0.00 0.00 0.00 3.69
229 230 0.181350 GGTATGAACTGCCCAGGAGG 59.819 60.000 0.00 0.00 39.47 4.30
248 249 4.875713 GCCGGGCCATACCACTGG 62.876 72.222 8.12 0.00 42.05 4.00
258 259 3.884895 CCATACCACTGGCAACTTATCA 58.115 45.455 0.00 0.00 37.61 2.15
259 260 4.269183 CCATACCACTGGCAACTTATCAA 58.731 43.478 0.00 0.00 37.61 2.57
260 261 4.889409 CCATACCACTGGCAACTTATCAAT 59.111 41.667 0.00 0.00 37.61 2.57
261 262 5.221106 CCATACCACTGGCAACTTATCAATG 60.221 44.000 0.00 0.00 37.61 2.82
262 263 4.032960 ACCACTGGCAACTTATCAATGA 57.967 40.909 0.00 0.00 37.61 2.57
263 264 4.406456 ACCACTGGCAACTTATCAATGAA 58.594 39.130 0.00 0.00 37.61 2.57
264 265 4.460382 ACCACTGGCAACTTATCAATGAAG 59.540 41.667 0.00 0.00 37.61 3.02
265 266 4.701651 CCACTGGCAACTTATCAATGAAGA 59.298 41.667 0.00 0.00 37.61 2.87
266 267 5.359009 CCACTGGCAACTTATCAATGAAGAT 59.641 40.000 0.00 0.00 37.61 2.40
267 268 6.263344 CACTGGCAACTTATCAATGAAGATG 58.737 40.000 0.00 0.00 37.61 2.90
268 269 5.359009 ACTGGCAACTTATCAATGAAGATGG 59.641 40.000 0.00 0.00 37.61 3.51
269 270 4.098349 TGGCAACTTATCAATGAAGATGGC 59.902 41.667 10.40 10.40 46.16 4.40
270 271 4.285292 GCAACTTATCAATGAAGATGGCG 58.715 43.478 0.00 0.00 29.87 5.69
271 272 4.790766 GCAACTTATCAATGAAGATGGCGG 60.791 45.833 0.00 0.00 29.87 6.13
272 273 4.422073 ACTTATCAATGAAGATGGCGGA 57.578 40.909 0.00 0.00 0.00 5.54
273 274 4.978099 ACTTATCAATGAAGATGGCGGAT 58.022 39.130 0.00 0.00 0.00 4.18
274 275 4.999950 ACTTATCAATGAAGATGGCGGATC 59.000 41.667 0.00 0.00 0.00 3.36
275 276 3.497103 ATCAATGAAGATGGCGGATCA 57.503 42.857 0.00 0.00 32.86 2.92
276 277 3.497103 TCAATGAAGATGGCGGATCAT 57.503 42.857 0.00 0.00 34.11 2.45
277 278 3.143728 TCAATGAAGATGGCGGATCATG 58.856 45.455 0.00 0.00 33.06 3.07
278 279 1.531423 ATGAAGATGGCGGATCATGC 58.469 50.000 0.00 0.00 32.86 4.06
279 280 0.180878 TGAAGATGGCGGATCATGCA 59.819 50.000 10.82 0.00 32.86 3.96
280 281 0.873054 GAAGATGGCGGATCATGCAG 59.127 55.000 10.82 0.00 32.86 4.41
281 282 0.536687 AAGATGGCGGATCATGCAGG 60.537 55.000 10.82 0.00 32.86 4.85
282 283 2.596631 ATGGCGGATCATGCAGGC 60.597 61.111 10.82 0.00 0.00 4.85
283 284 4.881440 TGGCGGATCATGCAGGCC 62.881 66.667 10.82 0.00 44.00 5.19
286 287 4.552365 CGGATCATGCAGGCCCGT 62.552 66.667 19.11 0.00 35.83 5.28
287 288 2.124151 GGATCATGCAGGCCCGTT 60.124 61.111 0.00 0.00 0.00 4.44
288 289 2.484062 GGATCATGCAGGCCCGTTG 61.484 63.158 0.00 0.00 0.00 4.10
289 290 1.451927 GATCATGCAGGCCCGTTGA 60.452 57.895 0.00 0.00 0.00 3.18
290 291 1.718757 GATCATGCAGGCCCGTTGAC 61.719 60.000 0.00 0.00 0.00 3.18
291 292 3.803082 CATGCAGGCCCGTTGACG 61.803 66.667 0.00 0.00 39.44 4.35
301 302 3.047877 CGTTGACGGCCCAAGACC 61.048 66.667 0.00 0.00 35.37 3.85
302 303 2.671963 GTTGACGGCCCAAGACCC 60.672 66.667 0.00 0.00 0.00 4.46
303 304 3.172106 TTGACGGCCCAAGACCCA 61.172 61.111 0.00 0.00 0.00 4.51
304 305 3.190738 TTGACGGCCCAAGACCCAG 62.191 63.158 0.00 0.00 0.00 4.45
305 306 3.319198 GACGGCCCAAGACCCAGA 61.319 66.667 0.00 0.00 0.00 3.86
306 307 3.316573 GACGGCCCAAGACCCAGAG 62.317 68.421 0.00 0.00 0.00 3.35
307 308 4.101448 CGGCCCAAGACCCAGAGG 62.101 72.222 0.00 0.00 40.04 3.69
308 309 4.432741 GGCCCAAGACCCAGAGGC 62.433 72.222 0.00 0.00 43.09 4.70
309 310 4.785453 GCCCAAGACCCAGAGGCG 62.785 72.222 0.00 0.00 36.11 5.52
310 311 3.003173 CCCAAGACCCAGAGGCGA 61.003 66.667 0.00 0.00 36.11 5.54
311 312 2.266055 CCAAGACCCAGAGGCGAC 59.734 66.667 0.00 0.00 36.11 5.19
313 314 1.674057 CAAGACCCAGAGGCGACTT 59.326 57.895 0.00 0.00 44.43 3.01
314 315 0.671781 CAAGACCCAGAGGCGACTTG 60.672 60.000 0.00 0.00 44.43 3.16
315 316 0.832135 AAGACCCAGAGGCGACTTGA 60.832 55.000 0.00 0.00 44.43 3.02
316 317 1.216710 GACCCAGAGGCGACTTGAG 59.783 63.158 0.00 0.00 44.43 3.02
317 318 2.232298 GACCCAGAGGCGACTTGAGG 62.232 65.000 0.00 0.00 44.43 3.86
318 319 2.125350 CCAGAGGCGACTTGAGGC 60.125 66.667 0.00 0.00 44.43 4.70
322 323 3.471620 AGGCGACTTGAGGCTCAA 58.528 55.556 27.01 27.01 40.72 3.02
330 331 3.103236 TTGAGGCTCAAGGGGATGA 57.897 52.632 25.38 1.09 31.83 2.92
331 332 1.371467 TTGAGGCTCAAGGGGATGAA 58.629 50.000 25.38 0.29 31.83 2.57
332 333 0.620556 TGAGGCTCAAGGGGATGAAC 59.379 55.000 16.28 0.00 0.00 3.18
333 334 0.106967 GAGGCTCAAGGGGATGAACC 60.107 60.000 10.25 0.00 36.10 3.62
334 335 1.452108 GGCTCAAGGGGATGAACCG 60.452 63.158 0.00 0.00 40.11 4.44
344 345 4.755266 GGGGATGAACCGCTATATATGT 57.245 45.455 0.00 0.00 46.34 2.29
345 346 5.864418 GGGGATGAACCGCTATATATGTA 57.136 43.478 0.00 0.00 46.34 2.29
346 347 6.420913 GGGGATGAACCGCTATATATGTAT 57.579 41.667 0.00 0.00 46.34 2.29
347 348 6.223852 GGGGATGAACCGCTATATATGTATG 58.776 44.000 0.00 0.00 46.34 2.39
348 349 6.041637 GGGGATGAACCGCTATATATGTATGA 59.958 42.308 0.00 0.00 46.34 2.15
349 350 6.924060 GGGATGAACCGCTATATATGTATGAC 59.076 42.308 0.00 0.00 40.11 3.06
350 351 7.201920 GGGATGAACCGCTATATATGTATGACT 60.202 40.741 0.00 0.00 40.11 3.41
351 352 8.198109 GGATGAACCGCTATATATGTATGACTT 58.802 37.037 0.00 0.00 0.00 3.01
352 353 8.932945 ATGAACCGCTATATATGTATGACTTG 57.067 34.615 0.00 0.00 0.00 3.16
353 354 7.892609 TGAACCGCTATATATGTATGACTTGT 58.107 34.615 0.00 0.00 0.00 3.16
354 355 8.364894 TGAACCGCTATATATGTATGACTTGTT 58.635 33.333 0.00 0.00 0.00 2.83
355 356 9.204570 GAACCGCTATATATGTATGACTTGTTT 57.795 33.333 0.00 0.00 0.00 2.83
356 357 9.555727 AACCGCTATATATGTATGACTTGTTTT 57.444 29.630 0.00 0.00 0.00 2.43
357 358 8.988934 ACCGCTATATATGTATGACTTGTTTTG 58.011 33.333 0.00 0.00 0.00 2.44
358 359 8.988934 CCGCTATATATGTATGACTTGTTTTGT 58.011 33.333 0.00 0.00 0.00 2.83
367 368 7.867752 TGTATGACTTGTTTTGTAAGGTAAGC 58.132 34.615 0.00 0.00 0.00 3.09
368 369 5.412526 TGACTTGTTTTGTAAGGTAAGCG 57.587 39.130 0.00 0.00 0.00 4.68
369 370 4.877251 TGACTTGTTTTGTAAGGTAAGCGT 59.123 37.500 0.00 0.00 0.00 5.07
370 371 6.047870 TGACTTGTTTTGTAAGGTAAGCGTA 58.952 36.000 0.00 0.00 0.00 4.42
371 372 6.201425 TGACTTGTTTTGTAAGGTAAGCGTAG 59.799 38.462 0.00 0.00 0.00 3.51
385 386 1.355916 CGTAGCTAGTCACCGAGCC 59.644 63.158 0.00 0.00 39.88 4.70
386 387 1.355916 GTAGCTAGTCACCGAGCCG 59.644 63.158 0.00 0.00 39.88 5.52
397 398 3.168271 CGAGCCGGACATGTTGTG 58.832 61.111 5.05 0.00 0.00 3.33
398 399 1.667830 CGAGCCGGACATGTTGTGT 60.668 57.895 5.05 0.00 45.83 3.72
399 400 0.389296 CGAGCCGGACATGTTGTGTA 60.389 55.000 5.05 0.00 42.36 2.90
400 401 1.739035 CGAGCCGGACATGTTGTGTAT 60.739 52.381 5.05 0.00 42.36 2.29
401 402 1.665679 GAGCCGGACATGTTGTGTATG 59.334 52.381 5.05 0.00 42.36 2.39
402 403 1.277842 AGCCGGACATGTTGTGTATGA 59.722 47.619 5.05 0.00 42.36 2.15
403 404 1.665679 GCCGGACATGTTGTGTATGAG 59.334 52.381 5.05 0.00 42.36 2.90
404 405 1.665679 CCGGACATGTTGTGTATGAGC 59.334 52.381 0.00 0.00 42.36 4.26
405 406 2.621338 CGGACATGTTGTGTATGAGCT 58.379 47.619 0.00 0.00 42.36 4.09
406 407 2.349580 CGGACATGTTGTGTATGAGCTG 59.650 50.000 0.00 0.00 42.36 4.24
407 408 2.679837 GGACATGTTGTGTATGAGCTGG 59.320 50.000 0.00 0.00 42.36 4.85
408 409 2.086869 ACATGTTGTGTATGAGCTGGC 58.913 47.619 0.00 0.00 39.91 4.85
409 410 1.402968 CATGTTGTGTATGAGCTGGCC 59.597 52.381 0.00 0.00 0.00 5.36
410 411 0.399833 TGTTGTGTATGAGCTGGCCA 59.600 50.000 4.71 4.71 0.00 5.36
411 412 1.089920 GTTGTGTATGAGCTGGCCAG 58.910 55.000 29.34 29.34 0.00 4.85
412 413 0.035152 TTGTGTATGAGCTGGCCAGG 60.035 55.000 33.46 15.81 0.00 4.45
413 414 0.909133 TGTGTATGAGCTGGCCAGGA 60.909 55.000 33.46 0.00 0.00 3.86
414 415 0.462759 GTGTATGAGCTGGCCAGGAC 60.463 60.000 33.46 18.21 0.00 3.85
415 416 0.618680 TGTATGAGCTGGCCAGGACT 60.619 55.000 33.46 22.80 0.00 3.85
416 417 0.105778 GTATGAGCTGGCCAGGACTC 59.894 60.000 33.46 28.91 0.00 3.36
417 418 1.050988 TATGAGCTGGCCAGGACTCC 61.051 60.000 33.46 16.68 0.00 3.85
418 419 4.154347 GAGCTGGCCAGGACTCCG 62.154 72.222 33.46 8.32 0.00 4.63
420 421 4.767255 GCTGGCCAGGACTCCGTG 62.767 72.222 33.46 6.68 0.00 4.94
421 422 2.997315 CTGGCCAGGACTCCGTGA 60.997 66.667 26.14 0.00 0.00 4.35
422 423 2.997315 TGGCCAGGACTCCGTGAG 60.997 66.667 0.00 0.03 35.52 3.51
423 424 4.459089 GGCCAGGACTCCGTGAGC 62.459 72.222 0.00 0.00 32.04 4.26
424 425 4.459089 GCCAGGACTCCGTGAGCC 62.459 72.222 0.00 4.29 32.04 4.70
425 426 4.135153 CCAGGACTCCGTGAGCCG 62.135 72.222 1.36 0.00 33.40 5.52
426 427 4.803426 CAGGACTCCGTGAGCCGC 62.803 72.222 1.36 0.00 33.40 6.53
453 454 8.525316 CGGGTGTCAACCTGTGTATATATATTA 58.475 37.037 5.12 0.00 46.46 0.98
527 528 8.467402 TTTGCCAAACATAAATAAACATACCG 57.533 30.769 0.00 0.00 0.00 4.02
549 550 5.410067 CGTCAAATAACATTTTCAGCCCAT 58.590 37.500 0.00 0.00 0.00 4.00
594 595 5.502079 TGTAAGTGTCCAAGTTTTTGAGGA 58.498 37.500 0.00 0.00 36.36 3.71
601 602 6.816140 GTGTCCAAGTTTTTGAGGAAAATCAA 59.184 34.615 0.00 0.00 39.29 2.57
604 605 7.010460 GTCCAAGTTTTTGAGGAAAATCAACAG 59.990 37.037 0.00 0.00 38.87 3.16
609 610 9.533253 AGTTTTTGAGGAAAATCAACAGTAATG 57.467 29.630 0.00 0.00 38.87 1.90
692 693 3.325425 TCGAGGGGTTGTTAATTCTCACA 59.675 43.478 0.00 0.00 0.00 3.58
712 713 9.936759 TCTCACATATGTTTGTAATGTTAGTCA 57.063 29.630 5.37 0.00 31.60 3.41
727 800 4.277672 TGTTAGTCAAGACGTCAGCTTACT 59.722 41.667 19.50 14.76 36.20 2.24
733 806 2.792878 AGACGTCAGCTTACTAGTGGT 58.207 47.619 19.50 0.00 0.00 4.16
734 807 3.947868 AGACGTCAGCTTACTAGTGGTA 58.052 45.455 19.50 0.00 0.00 3.25
735 808 3.688673 AGACGTCAGCTTACTAGTGGTAC 59.311 47.826 19.50 0.00 0.00 3.34
758 831 0.903454 AAGTGGAAGATCGTCCCCGT 60.903 55.000 22.87 8.87 36.80 5.28
810 884 1.907739 GTGGATAGTCTGGCTGCCA 59.092 57.895 21.96 21.96 32.81 4.92
910 985 1.123928 CTTGCCGTCCCCTCTCTATT 58.876 55.000 0.00 0.00 0.00 1.73
911 986 0.830648 TTGCCGTCCCCTCTCTATTG 59.169 55.000 0.00 0.00 0.00 1.90
912 987 0.032515 TGCCGTCCCCTCTCTATTGA 60.033 55.000 0.00 0.00 0.00 2.57
913 988 0.676736 GCCGTCCCCTCTCTATTGAG 59.323 60.000 0.00 0.00 41.51 3.02
914 989 1.754555 GCCGTCCCCTCTCTATTGAGA 60.755 57.143 6.69 6.69 46.13 3.27
925 1000 4.946478 CTCTATTGAGAGGTAACCCTGG 57.054 50.000 0.00 0.00 44.92 4.45
926 1001 4.290942 CTCTATTGAGAGGTAACCCTGGT 58.709 47.826 0.00 0.00 44.92 4.00
927 1002 4.695606 TCTATTGAGAGGTAACCCTGGTT 58.304 43.478 6.81 6.81 42.86 3.67
934 1009 1.146359 AGGTAACCCTGGTTCCCAAAC 59.854 52.381 12.58 2.47 40.58 2.93
1055 1130 4.790962 CTCCGTCGACCTCCCCGA 62.791 72.222 10.58 0.00 0.00 5.14
1104 1179 4.267503 GTCGATCCCGCCTCCGTC 62.268 72.222 0.00 0.00 35.37 4.79
1219 2209 2.202946 GCAGAGCCTACTTCGCCC 60.203 66.667 0.00 0.00 0.00 6.13
1225 2215 3.006728 CCTACTTCGCCCACCCCA 61.007 66.667 0.00 0.00 0.00 4.96
1295 2285 1.301401 TCACCTTTTGTCTCGCCCG 60.301 57.895 0.00 0.00 0.00 6.13
1358 2348 4.514781 TCAACGTACTAGAGTGTTGCAT 57.485 40.909 15.81 0.00 41.03 3.96
1410 2400 1.227380 CCTCGCGCTCCTATGCTTT 60.227 57.895 5.56 0.00 0.00 3.51
1468 2524 1.990060 GTCTACAGGGCTGCCTCCA 60.990 63.158 19.68 0.70 0.00 3.86
1625 2684 1.338337 CCTGCATATCTTCTCGTCGGT 59.662 52.381 0.00 0.00 0.00 4.69
1645 2704 2.262915 CAGACGAGTGGAGCACCC 59.737 66.667 0.00 0.00 34.49 4.61
1725 2805 3.576118 TCTCTCTTGGAGAAGGAACAGTG 59.424 47.826 0.00 0.00 46.85 3.66
1872 2955 0.110688 CATTGGCCGATTATGACGCG 60.111 55.000 3.53 3.53 0.00 6.01
2344 3448 4.574674 TGGATGCTTGGTGTAGATCTTT 57.425 40.909 0.00 0.00 0.00 2.52
2345 3449 4.922206 TGGATGCTTGGTGTAGATCTTTT 58.078 39.130 0.00 0.00 0.00 2.27
2378 3650 2.575735 TGGAAGTCATCAAGCCATACCA 59.424 45.455 0.00 0.00 0.00 3.25
2569 3863 6.492087 CCCCAGTTCTTCACTTATTTTACCAA 59.508 38.462 0.00 0.00 30.92 3.67
2608 3902 4.344104 TGCCTCTTAATTTGCTTAAGGCT 58.656 39.130 11.37 0.00 44.36 4.58
2611 3905 7.287061 TGCCTCTTAATTTGCTTAAGGCTATA 58.713 34.615 11.37 0.00 44.36 1.31
2619 3913 6.808008 TTTGCTTAAGGCTATATGATGAGC 57.192 37.500 4.29 0.00 42.39 4.26
2719 4029 3.565449 CCATTGGGGGATACTGTTCCAAA 60.565 47.826 0.00 0.00 40.34 3.28
2766 4077 6.583912 TCATCTTGCTACAACTATAAACGC 57.416 37.500 0.00 0.00 0.00 4.84
2885 4308 6.791303 TCTAATGAATATGGTTTTGGCGAAC 58.209 36.000 0.00 0.00 0.00 3.95
3152 4630 5.252547 TGCCTTTCTTGCAGTATATGACAA 58.747 37.500 0.00 0.00 34.05 3.18
3172 4650 7.446769 TGACAACTGTAGTTAGGAAGCAAATA 58.553 34.615 0.00 0.00 36.32 1.40
3231 4710 9.764870 GAGGTTTTATATTTAACGGAACTGAAC 57.235 33.333 0.00 0.00 0.00 3.18
3504 5923 4.106925 CTGGTGAGGGGCCAGCTC 62.107 72.222 4.39 4.09 45.72 4.09
3594 8229 8.157476 TGAGCTAAGAAACATCTTTTAGGACTT 58.843 33.333 0.00 0.00 0.00 3.01
3642 8327 7.743104 AGCAGAACTAATCAAAGTTTATGTCG 58.257 34.615 0.00 0.00 39.78 4.35
3859 9928 3.182572 GTGAGTGACTCGATTTGTGTGAC 59.817 47.826 8.23 0.00 32.35 3.67
3908 9977 1.961394 GTGGTGAAAGTTTCTTCCCCC 59.039 52.381 16.33 8.87 0.00 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.049790 AGGCTTAGAACATCTTTAACCGATC 58.950 40.000 0.00 0.00 0.00 3.69
1 2 5.990668 AGGCTTAGAACATCTTTAACCGAT 58.009 37.500 0.00 0.00 0.00 4.18
2 3 5.416271 AGGCTTAGAACATCTTTAACCGA 57.584 39.130 0.00 0.00 0.00 4.69
3 4 4.267928 CGAGGCTTAGAACATCTTTAACCG 59.732 45.833 0.00 0.00 0.00 4.44
4 5 5.063564 CACGAGGCTTAGAACATCTTTAACC 59.936 44.000 0.00 0.00 0.00 2.85
5 6 5.638234 ACACGAGGCTTAGAACATCTTTAAC 59.362 40.000 0.00 0.00 0.00 2.01
6 7 5.637810 CACACGAGGCTTAGAACATCTTTAA 59.362 40.000 0.00 0.00 0.00 1.52
7 8 5.047590 TCACACGAGGCTTAGAACATCTTTA 60.048 40.000 0.00 0.00 0.00 1.85
8 9 3.997021 CACACGAGGCTTAGAACATCTTT 59.003 43.478 0.00 0.00 0.00 2.52
9 10 3.258372 TCACACGAGGCTTAGAACATCTT 59.742 43.478 0.00 0.00 0.00 2.40
10 11 2.826128 TCACACGAGGCTTAGAACATCT 59.174 45.455 0.00 0.00 0.00 2.90
11 12 3.232213 TCACACGAGGCTTAGAACATC 57.768 47.619 0.00 0.00 0.00 3.06
12 13 3.678056 TTCACACGAGGCTTAGAACAT 57.322 42.857 0.00 0.00 0.00 2.71
13 14 3.462483 TTTCACACGAGGCTTAGAACA 57.538 42.857 0.00 0.00 0.00 3.18
14 15 6.476243 TTAATTTCACACGAGGCTTAGAAC 57.524 37.500 0.00 0.00 0.00 3.01
15 16 6.653320 ACATTAATTTCACACGAGGCTTAGAA 59.347 34.615 0.00 0.00 0.00 2.10
16 17 6.170506 ACATTAATTTCACACGAGGCTTAGA 58.829 36.000 0.00 0.00 0.00 2.10
17 18 6.422776 ACATTAATTTCACACGAGGCTTAG 57.577 37.500 0.00 0.00 0.00 2.18
18 19 7.324935 TCTACATTAATTTCACACGAGGCTTA 58.675 34.615 0.00 0.00 0.00 3.09
19 20 6.170506 TCTACATTAATTTCACACGAGGCTT 58.829 36.000 0.00 0.00 0.00 4.35
20 21 5.730550 TCTACATTAATTTCACACGAGGCT 58.269 37.500 0.00 0.00 0.00 4.58
21 22 6.417191 TTCTACATTAATTTCACACGAGGC 57.583 37.500 0.00 0.00 0.00 4.70
22 23 8.116753 GTCATTCTACATTAATTTCACACGAGG 58.883 37.037 0.00 0.00 0.00 4.63
23 24 7.841277 CGTCATTCTACATTAATTTCACACGAG 59.159 37.037 0.00 0.00 0.00 4.18
24 25 7.329962 ACGTCATTCTACATTAATTTCACACGA 59.670 33.333 0.00 0.00 0.00 4.35
25 26 7.453034 ACGTCATTCTACATTAATTTCACACG 58.547 34.615 0.00 0.00 0.00 4.49
26 27 8.440059 TGACGTCATTCTACATTAATTTCACAC 58.560 33.333 15.76 0.00 0.00 3.82
27 28 8.541133 TGACGTCATTCTACATTAATTTCACA 57.459 30.769 15.76 0.00 0.00 3.58
28 29 9.425893 CATGACGTCATTCTACATTAATTTCAC 57.574 33.333 28.04 0.00 33.61 3.18
29 30 9.377312 TCATGACGTCATTCTACATTAATTTCA 57.623 29.630 28.04 0.00 33.61 2.69
32 33 8.777413 CCATCATGACGTCATTCTACATTAATT 58.223 33.333 28.04 0.51 33.61 1.40
33 34 7.933577 ACCATCATGACGTCATTCTACATTAAT 59.066 33.333 28.04 0.74 33.61 1.40
34 35 7.272244 ACCATCATGACGTCATTCTACATTAA 58.728 34.615 28.04 6.14 33.61 1.40
35 36 6.816136 ACCATCATGACGTCATTCTACATTA 58.184 36.000 28.04 7.10 33.61 1.90
36 37 5.674525 ACCATCATGACGTCATTCTACATT 58.325 37.500 28.04 2.95 33.61 2.71
37 38 5.282055 ACCATCATGACGTCATTCTACAT 57.718 39.130 28.04 12.07 33.61 2.29
38 39 4.736126 ACCATCATGACGTCATTCTACA 57.264 40.909 28.04 10.35 33.61 2.74
39 40 7.491372 TCTTAAACCATCATGACGTCATTCTAC 59.509 37.037 28.04 0.00 33.61 2.59
40 41 7.552459 TCTTAAACCATCATGACGTCATTCTA 58.448 34.615 28.04 16.57 33.61 2.10
41 42 6.406370 TCTTAAACCATCATGACGTCATTCT 58.594 36.000 28.04 15.26 33.61 2.40
42 43 6.662414 TCTTAAACCATCATGACGTCATTC 57.338 37.500 28.04 0.00 33.61 2.67
43 44 7.174946 ACTTTCTTAAACCATCATGACGTCATT 59.825 33.333 28.04 15.12 33.61 2.57
44 45 6.655003 ACTTTCTTAAACCATCATGACGTCAT 59.345 34.615 25.18 25.18 36.96 3.06
45 46 5.995282 ACTTTCTTAAACCATCATGACGTCA 59.005 36.000 22.48 22.48 0.00 4.35
46 47 6.481954 ACTTTCTTAAACCATCATGACGTC 57.518 37.500 9.11 9.11 0.00 4.34
47 48 6.710744 AGAACTTTCTTAAACCATCATGACGT 59.289 34.615 0.00 0.00 32.55 4.34
48 49 7.017645 CAGAACTTTCTTAAACCATCATGACG 58.982 38.462 0.00 0.00 34.74 4.35
49 50 6.803807 GCAGAACTTTCTTAAACCATCATGAC 59.196 38.462 0.00 0.00 34.74 3.06
50 51 6.348458 CGCAGAACTTTCTTAAACCATCATGA 60.348 38.462 0.00 0.00 34.74 3.07
51 52 5.796935 CGCAGAACTTTCTTAAACCATCATG 59.203 40.000 0.00 0.00 34.74 3.07
52 53 5.705441 TCGCAGAACTTTCTTAAACCATCAT 59.295 36.000 0.00 0.00 34.74 2.45
53 54 5.060506 TCGCAGAACTTTCTTAAACCATCA 58.939 37.500 0.00 0.00 34.74 3.07
54 55 5.607119 TCGCAGAACTTTCTTAAACCATC 57.393 39.130 0.00 0.00 34.74 3.51
55 56 4.083271 GCTCGCAGAACTTTCTTAAACCAT 60.083 41.667 0.00 0.00 34.74 3.55
56 57 3.250040 GCTCGCAGAACTTTCTTAAACCA 59.750 43.478 0.00 0.00 34.74 3.67
57 58 3.498777 AGCTCGCAGAACTTTCTTAAACC 59.501 43.478 0.00 0.00 34.74 3.27
58 59 4.211374 TCAGCTCGCAGAACTTTCTTAAAC 59.789 41.667 0.00 0.00 34.74 2.01
59 60 4.211374 GTCAGCTCGCAGAACTTTCTTAAA 59.789 41.667 0.00 0.00 34.74 1.52
60 61 3.741344 GTCAGCTCGCAGAACTTTCTTAA 59.259 43.478 0.00 0.00 34.74 1.85
61 62 3.318017 GTCAGCTCGCAGAACTTTCTTA 58.682 45.455 0.00 0.00 34.74 2.10
62 63 2.139118 GTCAGCTCGCAGAACTTTCTT 58.861 47.619 0.00 0.00 34.74 2.52
63 64 1.789506 GTCAGCTCGCAGAACTTTCT 58.210 50.000 0.00 0.00 38.25 2.52
64 65 0.436531 CGTCAGCTCGCAGAACTTTC 59.563 55.000 0.00 0.00 34.09 2.62
65 66 0.249489 ACGTCAGCTCGCAGAACTTT 60.249 50.000 0.00 0.00 34.09 2.66
66 67 0.664767 GACGTCAGCTCGCAGAACTT 60.665 55.000 11.55 0.00 34.09 2.66
67 68 1.081108 GACGTCAGCTCGCAGAACT 60.081 57.895 11.55 0.00 34.09 3.01
68 69 0.734253 ATGACGTCAGCTCGCAGAAC 60.734 55.000 24.41 0.00 34.09 3.01
69 70 0.733909 CATGACGTCAGCTCGCAGAA 60.734 55.000 24.41 0.00 34.09 3.02
70 71 1.153958 CATGACGTCAGCTCGCAGA 60.154 57.895 24.41 0.00 0.00 4.26
71 72 2.163390 CCATGACGTCAGCTCGCAG 61.163 63.158 24.41 7.17 0.00 5.18
72 73 2.125952 CCATGACGTCAGCTCGCA 60.126 61.111 24.41 0.00 0.00 5.10
73 74 3.558411 GCCATGACGTCAGCTCGC 61.558 66.667 24.41 17.07 0.00 5.03
74 75 3.250323 CGCCATGACGTCAGCTCG 61.250 66.667 24.41 20.27 0.00 5.03
75 76 2.887568 CCGCCATGACGTCAGCTC 60.888 66.667 24.41 13.13 0.00 4.09
76 77 2.731691 AAACCGCCATGACGTCAGCT 62.732 55.000 24.41 4.95 0.00 4.24
77 78 1.017177 TAAACCGCCATGACGTCAGC 61.017 55.000 24.41 20.52 0.00 4.26
78 79 1.651987 ATAAACCGCCATGACGTCAG 58.348 50.000 24.41 12.34 0.00 3.51
79 80 2.816689 CTATAAACCGCCATGACGTCA 58.183 47.619 22.48 22.48 0.00 4.35
80 81 1.525619 GCTATAAACCGCCATGACGTC 59.474 52.381 9.11 9.11 0.00 4.34
81 82 1.134640 TGCTATAAACCGCCATGACGT 60.135 47.619 0.00 0.00 0.00 4.34
82 83 1.577468 TGCTATAAACCGCCATGACG 58.423 50.000 0.00 0.00 0.00 4.35
83 84 2.290641 CCTTGCTATAAACCGCCATGAC 59.709 50.000 0.00 0.00 0.00 3.06
84 85 2.092646 ACCTTGCTATAAACCGCCATGA 60.093 45.455 0.00 0.00 0.00 3.07
85 86 2.297701 ACCTTGCTATAAACCGCCATG 58.702 47.619 0.00 0.00 0.00 3.66
86 87 2.729028 ACCTTGCTATAAACCGCCAT 57.271 45.000 0.00 0.00 0.00 4.40
87 88 2.500392 AACCTTGCTATAAACCGCCA 57.500 45.000 0.00 0.00 0.00 5.69
88 89 4.577283 TGATAAACCTTGCTATAAACCGCC 59.423 41.667 0.00 0.00 0.00 6.13
89 90 5.744666 TGATAAACCTTGCTATAAACCGC 57.255 39.130 0.00 0.00 0.00 5.68
90 91 7.531716 TGTTTGATAAACCTTGCTATAAACCG 58.468 34.615 2.36 0.00 40.67 4.44
91 92 9.699703 TTTGTTTGATAAACCTTGCTATAAACC 57.300 29.630 2.36 0.00 40.67 3.27
93 94 9.921637 CCTTTGTTTGATAAACCTTGCTATAAA 57.078 29.630 2.36 0.00 40.67 1.40
94 95 8.032451 GCCTTTGTTTGATAAACCTTGCTATAA 58.968 33.333 2.36 0.00 40.67 0.98
95 96 7.543756 GCCTTTGTTTGATAAACCTTGCTATA 58.456 34.615 2.36 0.00 40.67 1.31
96 97 6.398095 GCCTTTGTTTGATAAACCTTGCTAT 58.602 36.000 2.36 0.00 40.67 2.97
97 98 5.563867 CGCCTTTGTTTGATAAACCTTGCTA 60.564 40.000 2.36 0.00 40.67 3.49
98 99 4.631131 GCCTTTGTTTGATAAACCTTGCT 58.369 39.130 2.36 0.00 40.67 3.91
99 100 3.428534 CGCCTTTGTTTGATAAACCTTGC 59.571 43.478 2.36 0.44 40.67 4.01
100 101 4.865776 TCGCCTTTGTTTGATAAACCTTG 58.134 39.130 2.36 0.00 40.67 3.61
101 102 5.469479 CATCGCCTTTGTTTGATAAACCTT 58.531 37.500 2.36 0.00 40.67 3.50
102 103 4.618227 GCATCGCCTTTGTTTGATAAACCT 60.618 41.667 2.36 0.00 40.67 3.50
103 104 3.612423 GCATCGCCTTTGTTTGATAAACC 59.388 43.478 2.36 0.00 40.67 3.27
104 105 4.233789 TGCATCGCCTTTGTTTGATAAAC 58.766 39.130 0.00 0.00 41.73 2.01
105 106 4.511617 TGCATCGCCTTTGTTTGATAAA 57.488 36.364 0.00 0.00 0.00 1.40
106 107 4.217334 TCTTGCATCGCCTTTGTTTGATAA 59.783 37.500 0.00 0.00 0.00 1.75
107 108 3.755905 TCTTGCATCGCCTTTGTTTGATA 59.244 39.130 0.00 0.00 0.00 2.15
108 109 2.557924 TCTTGCATCGCCTTTGTTTGAT 59.442 40.909 0.00 0.00 0.00 2.57
109 110 1.952990 TCTTGCATCGCCTTTGTTTGA 59.047 42.857 0.00 0.00 0.00 2.69
110 111 2.420628 TCTTGCATCGCCTTTGTTTG 57.579 45.000 0.00 0.00 0.00 2.93
111 112 3.665745 AATCTTGCATCGCCTTTGTTT 57.334 38.095 0.00 0.00 0.00 2.83
112 113 3.665745 AAATCTTGCATCGCCTTTGTT 57.334 38.095 0.00 0.00 0.00 2.83
113 114 3.005684 TCAAAATCTTGCATCGCCTTTGT 59.994 39.130 0.00 0.00 32.14 2.83
114 115 3.365820 GTCAAAATCTTGCATCGCCTTTG 59.634 43.478 0.00 0.00 32.14 2.77
115 116 3.005684 TGTCAAAATCTTGCATCGCCTTT 59.994 39.130 0.00 0.00 32.14 3.11
116 117 2.557924 TGTCAAAATCTTGCATCGCCTT 59.442 40.909 0.00 0.00 32.14 4.35
117 118 2.161855 TGTCAAAATCTTGCATCGCCT 58.838 42.857 0.00 0.00 32.14 5.52
118 119 2.634982 TGTCAAAATCTTGCATCGCC 57.365 45.000 0.00 0.00 32.14 5.54
119 120 3.568538 ACTTGTCAAAATCTTGCATCGC 58.431 40.909 0.00 0.00 32.14 4.58
120 121 4.786507 TGACTTGTCAAAATCTTGCATCG 58.213 39.130 0.44 0.00 32.14 3.84
121 122 5.159209 CCTGACTTGTCAAAATCTTGCATC 58.841 41.667 4.95 0.00 32.14 3.91
122 123 4.586001 ACCTGACTTGTCAAAATCTTGCAT 59.414 37.500 4.95 0.00 32.14 3.96
123 124 3.953612 ACCTGACTTGTCAAAATCTTGCA 59.046 39.130 4.95 0.00 32.14 4.08
124 125 4.574599 ACCTGACTTGTCAAAATCTTGC 57.425 40.909 4.95 0.00 32.14 4.01
125 126 7.874940 TCAATACCTGACTTGTCAAAATCTTG 58.125 34.615 4.95 5.90 0.00 3.02
126 127 8.463930 TTCAATACCTGACTTGTCAAAATCTT 57.536 30.769 4.95 0.00 32.21 2.40
127 128 7.939039 TCTTCAATACCTGACTTGTCAAAATCT 59.061 33.333 4.95 0.00 32.21 2.40
128 129 8.099364 TCTTCAATACCTGACTTGTCAAAATC 57.901 34.615 4.95 0.00 32.21 2.17
129 130 8.641498 ATCTTCAATACCTGACTTGTCAAAAT 57.359 30.769 4.95 0.00 32.21 1.82
130 131 8.352201 CAATCTTCAATACCTGACTTGTCAAAA 58.648 33.333 4.95 0.00 32.21 2.44
131 132 7.719193 TCAATCTTCAATACCTGACTTGTCAAA 59.281 33.333 4.95 0.00 32.21 2.69
132 133 7.223584 TCAATCTTCAATACCTGACTTGTCAA 58.776 34.615 4.95 0.00 32.21 3.18
133 134 6.768483 TCAATCTTCAATACCTGACTTGTCA 58.232 36.000 3.32 3.32 32.21 3.58
134 135 7.856145 ATCAATCTTCAATACCTGACTTGTC 57.144 36.000 0.00 0.00 32.21 3.18
135 136 9.334947 CATATCAATCTTCAATACCTGACTTGT 57.665 33.333 0.00 0.00 32.21 3.16
136 137 9.551734 TCATATCAATCTTCAATACCTGACTTG 57.448 33.333 0.00 0.00 32.21 3.16
138 139 9.553064 GTTCATATCAATCTTCAATACCTGACT 57.447 33.333 0.00 0.00 32.21 3.41
139 140 9.330063 TGTTCATATCAATCTTCAATACCTGAC 57.670 33.333 0.00 0.00 32.21 3.51
140 141 9.904198 TTGTTCATATCAATCTTCAATACCTGA 57.096 29.630 0.00 0.00 0.00 3.86
142 143 9.911788 ACTTGTTCATATCAATCTTCAATACCT 57.088 29.630 0.00 0.00 0.00 3.08
154 155 8.859090 AGGTTGATTTGAACTTGTTCATATCAA 58.141 29.630 32.85 32.85 46.74 2.57
155 156 8.298854 CAGGTTGATTTGAACTTGTTCATATCA 58.701 33.333 28.54 28.54 43.00 2.15
156 157 7.756722 CCAGGTTGATTTGAACTTGTTCATATC 59.243 37.037 25.66 25.66 38.80 1.63
157 158 7.309990 CCCAGGTTGATTTGAACTTGTTCATAT 60.310 37.037 15.67 15.62 32.47 1.78
158 159 6.015519 CCCAGGTTGATTTGAACTTGTTCATA 60.016 38.462 15.67 11.95 32.47 2.15
159 160 5.221501 CCCAGGTTGATTTGAACTTGTTCAT 60.222 40.000 15.67 3.52 32.47 2.57
160 161 4.099266 CCCAGGTTGATTTGAACTTGTTCA 59.901 41.667 11.62 11.62 32.47 3.18
161 162 4.501400 CCCCAGGTTGATTTGAACTTGTTC 60.501 45.833 6.56 6.56 32.47 3.18
162 163 3.387699 CCCCAGGTTGATTTGAACTTGTT 59.612 43.478 0.00 0.00 32.47 2.83
163 164 2.965147 CCCCAGGTTGATTTGAACTTGT 59.035 45.455 0.00 0.00 32.47 3.16
164 165 2.289010 GCCCCAGGTTGATTTGAACTTG 60.289 50.000 0.00 0.00 33.77 3.16
165 166 1.970640 GCCCCAGGTTGATTTGAACTT 59.029 47.619 0.00 0.00 0.00 2.66
166 167 1.632589 GCCCCAGGTTGATTTGAACT 58.367 50.000 0.00 0.00 0.00 3.01
167 168 0.608130 GGCCCCAGGTTGATTTGAAC 59.392 55.000 0.00 0.00 0.00 3.18
168 169 0.486879 AGGCCCCAGGTTGATTTGAA 59.513 50.000 0.00 0.00 0.00 2.69
169 170 1.377690 TAGGCCCCAGGTTGATTTGA 58.622 50.000 0.00 0.00 0.00 2.69
170 171 2.230130 TTAGGCCCCAGGTTGATTTG 57.770 50.000 0.00 0.00 0.00 2.32
171 172 2.044353 ACATTAGGCCCCAGGTTGATTT 59.956 45.455 0.00 0.00 0.00 2.17
172 173 1.645919 ACATTAGGCCCCAGGTTGATT 59.354 47.619 0.00 0.00 0.00 2.57
173 174 1.308877 ACATTAGGCCCCAGGTTGAT 58.691 50.000 0.00 0.00 0.00 2.57
174 175 1.080638 AACATTAGGCCCCAGGTTGA 58.919 50.000 0.00 0.00 0.00 3.18
175 176 1.185315 CAACATTAGGCCCCAGGTTG 58.815 55.000 13.22 13.22 0.00 3.77
176 177 0.041090 CCAACATTAGGCCCCAGGTT 59.959 55.000 0.00 0.00 0.00 3.50
177 178 1.697297 CCAACATTAGGCCCCAGGT 59.303 57.895 0.00 0.00 0.00 4.00
178 179 1.076044 CCCAACATTAGGCCCCAGG 60.076 63.158 0.00 0.00 0.00 4.45
179 180 1.076044 CCCCAACATTAGGCCCCAG 60.076 63.158 0.00 0.00 0.00 4.45
180 181 0.928726 ATCCCCAACATTAGGCCCCA 60.929 55.000 0.00 0.00 0.00 4.96
181 182 1.154430 TATCCCCAACATTAGGCCCC 58.846 55.000 0.00 0.00 0.00 5.80
182 183 4.044191 AGTTATATCCCCAACATTAGGCCC 59.956 45.833 0.00 0.00 0.00 5.80
183 184 5.256806 AGTTATATCCCCAACATTAGGCC 57.743 43.478 0.00 0.00 0.00 5.19
184 185 7.339466 CCAATAGTTATATCCCCAACATTAGGC 59.661 40.741 0.00 0.00 0.00 3.93
185 186 7.834181 CCCAATAGTTATATCCCCAACATTAGG 59.166 40.741 0.00 0.00 0.00 2.69
186 187 8.390921 ACCCAATAGTTATATCCCCAACATTAG 58.609 37.037 0.00 0.00 0.00 1.73
187 188 8.295597 ACCCAATAGTTATATCCCCAACATTA 57.704 34.615 0.00 0.00 0.00 1.90
188 189 7.174363 ACCCAATAGTTATATCCCCAACATT 57.826 36.000 0.00 0.00 0.00 2.71
189 190 6.796867 ACCCAATAGTTATATCCCCAACAT 57.203 37.500 0.00 0.00 0.00 2.71
190 191 7.517953 TCATACCCAATAGTTATATCCCCAACA 59.482 37.037 0.00 0.00 0.00 3.33
191 192 7.924541 TCATACCCAATAGTTATATCCCCAAC 58.075 38.462 0.00 0.00 0.00 3.77
192 193 8.387813 GTTCATACCCAATAGTTATATCCCCAA 58.612 37.037 0.00 0.00 0.00 4.12
193 194 7.742213 AGTTCATACCCAATAGTTATATCCCCA 59.258 37.037 0.00 0.00 0.00 4.96
194 195 8.047310 CAGTTCATACCCAATAGTTATATCCCC 58.953 40.741 0.00 0.00 0.00 4.81
195 196 7.553044 GCAGTTCATACCCAATAGTTATATCCC 59.447 40.741 0.00 0.00 0.00 3.85
196 197 7.553044 GGCAGTTCATACCCAATAGTTATATCC 59.447 40.741 0.00 0.00 0.00 2.59
197 198 7.553044 GGGCAGTTCATACCCAATAGTTATATC 59.447 40.741 0.00 0.00 43.64 1.63
198 199 7.402862 GGGCAGTTCATACCCAATAGTTATAT 58.597 38.462 0.00 0.00 43.64 0.86
199 200 6.775708 GGGCAGTTCATACCCAATAGTTATA 58.224 40.000 0.00 0.00 43.64 0.98
200 201 5.631119 GGGCAGTTCATACCCAATAGTTAT 58.369 41.667 0.00 0.00 43.64 1.89
201 202 5.043737 GGGCAGTTCATACCCAATAGTTA 57.956 43.478 0.00 0.00 43.64 2.24
202 203 3.898482 GGGCAGTTCATACCCAATAGTT 58.102 45.455 0.00 0.00 43.64 2.24
203 204 3.577805 GGGCAGTTCATACCCAATAGT 57.422 47.619 0.00 0.00 43.64 2.12
209 210 0.181350 CTCCTGGGCAGTTCATACCC 59.819 60.000 0.00 0.00 44.52 3.69
210 211 0.181350 CCTCCTGGGCAGTTCATACC 59.819 60.000 0.00 0.00 0.00 2.73
211 212 3.788672 CCTCCTGGGCAGTTCATAC 57.211 57.895 0.00 0.00 0.00 2.39
231 232 4.875713 CCAGTGGTATGGCCCGGC 62.876 72.222 0.00 0.00 36.04 6.13
237 238 3.884895 TGATAAGTTGCCAGTGGTATGG 58.115 45.455 11.74 0.00 43.72 2.74
238 239 5.589855 TCATTGATAAGTTGCCAGTGGTATG 59.410 40.000 11.74 0.00 0.00 2.39
239 240 5.754782 TCATTGATAAGTTGCCAGTGGTAT 58.245 37.500 11.74 0.00 0.00 2.73
240 241 5.172687 TCATTGATAAGTTGCCAGTGGTA 57.827 39.130 11.74 2.55 0.00 3.25
241 242 4.032960 TCATTGATAAGTTGCCAGTGGT 57.967 40.909 11.74 0.00 0.00 4.16
242 243 4.701651 TCTTCATTGATAAGTTGCCAGTGG 59.298 41.667 4.20 4.20 0.00 4.00
243 244 5.885230 TCTTCATTGATAAGTTGCCAGTG 57.115 39.130 0.00 0.00 0.00 3.66
244 245 5.359009 CCATCTTCATTGATAAGTTGCCAGT 59.641 40.000 0.00 0.00 0.00 4.00
245 246 5.735354 GCCATCTTCATTGATAAGTTGCCAG 60.735 44.000 0.00 0.00 0.00 4.85
246 247 4.098349 GCCATCTTCATTGATAAGTTGCCA 59.902 41.667 0.00 0.00 0.00 4.92
247 248 4.614946 GCCATCTTCATTGATAAGTTGCC 58.385 43.478 0.00 0.00 0.00 4.52
248 249 4.285292 CGCCATCTTCATTGATAAGTTGC 58.715 43.478 0.00 0.00 0.00 4.17
249 250 4.576053 TCCGCCATCTTCATTGATAAGTTG 59.424 41.667 0.00 0.00 0.00 3.16
250 251 4.780815 TCCGCCATCTTCATTGATAAGTT 58.219 39.130 0.00 0.00 0.00 2.66
251 252 4.422073 TCCGCCATCTTCATTGATAAGT 57.578 40.909 0.00 0.00 0.00 2.24
252 253 4.999311 TGATCCGCCATCTTCATTGATAAG 59.001 41.667 0.00 0.00 31.92 1.73
253 254 4.971939 TGATCCGCCATCTTCATTGATAA 58.028 39.130 0.00 0.00 31.92 1.75
254 255 4.622260 TGATCCGCCATCTTCATTGATA 57.378 40.909 0.00 0.00 31.92 2.15
255 256 3.497103 TGATCCGCCATCTTCATTGAT 57.503 42.857 0.00 0.00 31.92 2.57
256 257 3.143728 CATGATCCGCCATCTTCATTGA 58.856 45.455 0.00 0.00 31.92 2.57
257 258 2.351447 GCATGATCCGCCATCTTCATTG 60.351 50.000 0.00 0.00 31.92 2.82
258 259 1.884579 GCATGATCCGCCATCTTCATT 59.115 47.619 0.00 0.00 31.92 2.57
259 260 1.202842 TGCATGATCCGCCATCTTCAT 60.203 47.619 0.00 0.00 31.92 2.57
260 261 0.180878 TGCATGATCCGCCATCTTCA 59.819 50.000 0.00 0.00 31.92 3.02
261 262 0.873054 CTGCATGATCCGCCATCTTC 59.127 55.000 0.00 0.00 31.92 2.87
262 263 0.536687 CCTGCATGATCCGCCATCTT 60.537 55.000 0.00 0.00 31.92 2.40
263 264 1.072678 CCTGCATGATCCGCCATCT 59.927 57.895 0.00 0.00 31.92 2.90
264 265 2.623915 GCCTGCATGATCCGCCATC 61.624 63.158 0.00 0.00 0.00 3.51
265 266 2.596631 GCCTGCATGATCCGCCAT 60.597 61.111 0.00 0.00 0.00 4.40
266 267 4.881440 GGCCTGCATGATCCGCCA 62.881 66.667 0.00 0.00 39.50 5.69
269 270 4.552365 ACGGGCCTGCATGATCCG 62.552 66.667 12.89 17.58 45.42 4.18
270 271 2.124151 AACGGGCCTGCATGATCC 60.124 61.111 12.89 0.00 0.00 3.36
271 272 1.451927 TCAACGGGCCTGCATGATC 60.452 57.895 12.89 0.00 0.00 2.92
272 273 1.750399 GTCAACGGGCCTGCATGAT 60.750 57.895 20.24 0.00 0.00 2.45
273 274 2.359850 GTCAACGGGCCTGCATGA 60.360 61.111 12.89 14.15 0.00 3.07
274 275 3.803082 CGTCAACGGGCCTGCATG 61.803 66.667 12.89 11.75 35.37 4.06
284 285 3.047877 GGTCTTGGGCCGTCAACG 61.048 66.667 0.00 0.00 39.44 4.10
285 286 2.671963 GGGTCTTGGGCCGTCAAC 60.672 66.667 0.00 0.00 0.00 3.18
286 287 3.172106 TGGGTCTTGGGCCGTCAA 61.172 61.111 0.00 0.00 0.00 3.18
287 288 3.636231 CTGGGTCTTGGGCCGTCA 61.636 66.667 0.00 0.00 0.00 4.35
288 289 3.316573 CTCTGGGTCTTGGGCCGTC 62.317 68.421 0.00 0.00 0.00 4.79
289 290 3.322466 CTCTGGGTCTTGGGCCGT 61.322 66.667 0.00 0.00 0.00 5.68
290 291 4.101448 CCTCTGGGTCTTGGGCCG 62.101 72.222 0.00 0.00 0.00 6.13
291 292 4.432741 GCCTCTGGGTCTTGGGCC 62.433 72.222 0.00 0.00 37.12 5.80
292 293 4.785453 CGCCTCTGGGTCTTGGGC 62.785 72.222 0.00 0.00 39.43 5.36
293 294 3.003173 TCGCCTCTGGGTCTTGGG 61.003 66.667 0.00 0.00 34.45 4.12
294 295 1.831652 AAGTCGCCTCTGGGTCTTGG 61.832 60.000 0.00 0.00 34.45 3.61
295 296 0.671781 CAAGTCGCCTCTGGGTCTTG 60.672 60.000 0.00 0.00 34.63 3.02
296 297 0.832135 TCAAGTCGCCTCTGGGTCTT 60.832 55.000 0.00 0.00 34.45 3.01
297 298 1.228894 TCAAGTCGCCTCTGGGTCT 60.229 57.895 0.00 0.00 34.45 3.85
298 299 1.216710 CTCAAGTCGCCTCTGGGTC 59.783 63.158 0.00 0.00 34.45 4.46
299 300 2.286523 CCTCAAGTCGCCTCTGGGT 61.287 63.158 0.00 0.00 34.45 4.51
300 301 2.581354 CCTCAAGTCGCCTCTGGG 59.419 66.667 0.00 0.00 0.00 4.45
301 302 2.125350 GCCTCAAGTCGCCTCTGG 60.125 66.667 0.00 0.00 0.00 3.86
302 303 1.153667 GAGCCTCAAGTCGCCTCTG 60.154 63.158 0.00 0.00 0.00 3.35
303 304 1.188219 TTGAGCCTCAAGTCGCCTCT 61.188 55.000 2.24 0.00 31.83 3.69
304 305 0.739112 CTTGAGCCTCAAGTCGCCTC 60.739 60.000 23.46 0.00 46.50 4.70
305 306 1.294780 CTTGAGCCTCAAGTCGCCT 59.705 57.895 23.46 0.00 46.50 5.52
306 307 3.882025 CTTGAGCCTCAAGTCGCC 58.118 61.111 23.46 0.00 46.50 5.54
312 313 1.004745 GTTCATCCCCTTGAGCCTCAA 59.995 52.381 7.00 7.00 34.79 3.02
313 314 0.620556 GTTCATCCCCTTGAGCCTCA 59.379 55.000 0.00 0.00 0.00 3.86
314 315 0.106967 GGTTCATCCCCTTGAGCCTC 60.107 60.000 0.68 0.00 42.07 4.70
315 316 1.915078 CGGTTCATCCCCTTGAGCCT 61.915 60.000 5.91 0.00 42.87 4.58
316 317 1.452108 CGGTTCATCCCCTTGAGCC 60.452 63.158 0.00 0.00 41.96 4.70
317 318 2.115291 GCGGTTCATCCCCTTGAGC 61.115 63.158 0.00 0.00 0.00 4.26
318 319 0.830648 TAGCGGTTCATCCCCTTGAG 59.169 55.000 0.00 0.00 0.00 3.02
319 320 1.507140 ATAGCGGTTCATCCCCTTGA 58.493 50.000 0.00 0.00 0.00 3.02
320 321 3.703001 ATATAGCGGTTCATCCCCTTG 57.297 47.619 0.00 0.00 0.00 3.61
321 322 4.783227 ACATATATAGCGGTTCATCCCCTT 59.217 41.667 0.00 0.00 0.00 3.95
322 323 4.362677 ACATATATAGCGGTTCATCCCCT 58.637 43.478 0.00 0.00 0.00 4.79
323 324 4.755266 ACATATATAGCGGTTCATCCCC 57.245 45.455 0.00 0.00 0.00 4.81
324 325 6.924060 GTCATACATATATAGCGGTTCATCCC 59.076 42.308 0.00 0.00 0.00 3.85
325 326 7.717568 AGTCATACATATATAGCGGTTCATCC 58.282 38.462 0.00 0.00 0.00 3.51
326 327 9.025020 CAAGTCATACATATATAGCGGTTCATC 57.975 37.037 0.00 0.00 0.00 2.92
327 328 8.531982 ACAAGTCATACATATATAGCGGTTCAT 58.468 33.333 0.00 0.00 0.00 2.57
328 329 7.892609 ACAAGTCATACATATATAGCGGTTCA 58.107 34.615 0.00 0.00 0.00 3.18
329 330 8.758633 AACAAGTCATACATATATAGCGGTTC 57.241 34.615 0.00 0.00 0.00 3.62
330 331 9.555727 AAAACAAGTCATACATATATAGCGGTT 57.444 29.630 0.00 0.00 0.00 4.44
331 332 8.988934 CAAAACAAGTCATACATATATAGCGGT 58.011 33.333 0.00 0.00 0.00 5.68
332 333 8.988934 ACAAAACAAGTCATACATATATAGCGG 58.011 33.333 0.00 0.00 0.00 5.52
341 342 8.512138 GCTTACCTTACAAAACAAGTCATACAT 58.488 33.333 0.00 0.00 0.00 2.29
342 343 7.307514 CGCTTACCTTACAAAACAAGTCATACA 60.308 37.037 0.00 0.00 0.00 2.29
343 344 7.013529 CGCTTACCTTACAAAACAAGTCATAC 58.986 38.462 0.00 0.00 0.00 2.39
344 345 6.707161 ACGCTTACCTTACAAAACAAGTCATA 59.293 34.615 0.00 0.00 0.00 2.15
345 346 5.529800 ACGCTTACCTTACAAAACAAGTCAT 59.470 36.000 0.00 0.00 0.00 3.06
346 347 4.877251 ACGCTTACCTTACAAAACAAGTCA 59.123 37.500 0.00 0.00 0.00 3.41
347 348 5.413969 ACGCTTACCTTACAAAACAAGTC 57.586 39.130 0.00 0.00 0.00 3.01
348 349 5.049886 GCTACGCTTACCTTACAAAACAAGT 60.050 40.000 0.00 0.00 0.00 3.16
349 350 5.178809 AGCTACGCTTACCTTACAAAACAAG 59.821 40.000 0.00 0.00 33.89 3.16
350 351 5.058490 AGCTACGCTTACCTTACAAAACAA 58.942 37.500 0.00 0.00 33.89 2.83
351 352 4.634199 AGCTACGCTTACCTTACAAAACA 58.366 39.130 0.00 0.00 33.89 2.83
352 353 5.866092 ACTAGCTACGCTTACCTTACAAAAC 59.134 40.000 0.00 0.00 40.44 2.43
353 354 6.029346 ACTAGCTACGCTTACCTTACAAAA 57.971 37.500 0.00 0.00 40.44 2.44
354 355 5.183713 TGACTAGCTACGCTTACCTTACAAA 59.816 40.000 0.00 0.00 40.44 2.83
355 356 4.701651 TGACTAGCTACGCTTACCTTACAA 59.298 41.667 0.00 0.00 40.44 2.41
356 357 4.095483 GTGACTAGCTACGCTTACCTTACA 59.905 45.833 0.00 0.00 40.44 2.41
357 358 4.497173 GGTGACTAGCTACGCTTACCTTAC 60.497 50.000 0.00 0.00 40.44 2.34
358 359 3.629398 GGTGACTAGCTACGCTTACCTTA 59.371 47.826 0.00 0.00 40.44 2.69
359 360 2.426381 GGTGACTAGCTACGCTTACCTT 59.574 50.000 0.00 0.00 40.44 3.50
360 361 2.022934 GGTGACTAGCTACGCTTACCT 58.977 52.381 0.00 0.00 40.44 3.08
361 362 1.268437 CGGTGACTAGCTACGCTTACC 60.268 57.143 0.00 0.00 40.44 2.85
362 363 1.667724 TCGGTGACTAGCTACGCTTAC 59.332 52.381 0.00 0.00 40.44 2.34
363 364 1.938577 CTCGGTGACTAGCTACGCTTA 59.061 52.381 0.00 0.00 40.44 3.09
364 365 0.733729 CTCGGTGACTAGCTACGCTT 59.266 55.000 0.00 0.00 40.44 4.68
365 366 1.716826 GCTCGGTGACTAGCTACGCT 61.717 60.000 0.00 0.00 45.16 5.07
366 367 1.298488 GCTCGGTGACTAGCTACGC 60.298 63.158 0.00 0.00 45.16 4.42
380 381 0.389296 TACACAACATGTCCGGCTCG 60.389 55.000 0.00 0.00 42.09 5.03
381 382 1.665679 CATACACAACATGTCCGGCTC 59.334 52.381 0.00 0.00 42.09 4.70
382 383 1.277842 TCATACACAACATGTCCGGCT 59.722 47.619 0.00 0.00 42.09 5.52
383 384 1.665679 CTCATACACAACATGTCCGGC 59.334 52.381 0.00 0.00 42.09 6.13
384 385 1.665679 GCTCATACACAACATGTCCGG 59.334 52.381 0.00 0.00 42.09 5.14
385 386 2.349580 CAGCTCATACACAACATGTCCG 59.650 50.000 0.00 0.00 42.09 4.79
386 387 2.679837 CCAGCTCATACACAACATGTCC 59.320 50.000 0.00 0.00 42.09 4.02
387 388 2.096496 GCCAGCTCATACACAACATGTC 59.904 50.000 0.00 0.00 42.09 3.06
388 389 2.086869 GCCAGCTCATACACAACATGT 58.913 47.619 0.00 0.00 46.06 3.21
389 390 1.402968 GGCCAGCTCATACACAACATG 59.597 52.381 0.00 0.00 0.00 3.21
390 391 1.004628 TGGCCAGCTCATACACAACAT 59.995 47.619 0.00 0.00 0.00 2.71
391 392 0.399833 TGGCCAGCTCATACACAACA 59.600 50.000 0.00 0.00 0.00 3.33
392 393 1.089920 CTGGCCAGCTCATACACAAC 58.910 55.000 22.33 0.00 0.00 3.32
393 394 0.035152 CCTGGCCAGCTCATACACAA 60.035 55.000 28.39 0.00 0.00 3.33
394 395 0.909133 TCCTGGCCAGCTCATACACA 60.909 55.000 28.39 0.00 0.00 3.72
395 396 0.462759 GTCCTGGCCAGCTCATACAC 60.463 60.000 28.39 9.97 0.00 2.90
396 397 0.618680 AGTCCTGGCCAGCTCATACA 60.619 55.000 28.39 1.07 0.00 2.29
397 398 0.105778 GAGTCCTGGCCAGCTCATAC 59.894 60.000 28.39 17.72 0.00 2.39
398 399 1.050988 GGAGTCCTGGCCAGCTCATA 61.051 60.000 30.15 12.49 0.00 2.15
399 400 2.373707 GGAGTCCTGGCCAGCTCAT 61.374 63.158 30.15 17.04 0.00 2.90
400 401 3.005539 GGAGTCCTGGCCAGCTCA 61.006 66.667 30.15 15.55 0.00 4.26
401 402 4.154347 CGGAGTCCTGGCCAGCTC 62.154 72.222 28.39 26.20 0.00 4.09
403 404 4.767255 CACGGAGTCCTGGCCAGC 62.767 72.222 28.39 14.93 41.61 4.85
404 405 2.997315 TCACGGAGTCCTGGCCAG 60.997 66.667 26.87 26.87 41.61 4.85
405 406 2.997315 CTCACGGAGTCCTGGCCA 60.997 66.667 4.71 4.71 41.61 5.36
406 407 4.459089 GCTCACGGAGTCCTGGCC 62.459 72.222 7.77 0.00 41.61 5.36
407 408 4.459089 GGCTCACGGAGTCCTGGC 62.459 72.222 7.77 9.70 41.61 4.85
408 409 4.135153 CGGCTCACGGAGTCCTGG 62.135 72.222 7.77 0.00 41.61 4.45
409 410 4.803426 GCGGCTCACGGAGTCCTG 62.803 72.222 7.77 5.00 41.61 3.86
424 425 4.619227 ACAGGTTGACACCCGGCG 62.619 66.667 0.00 0.00 45.63 6.46
425 426 2.386064 TACACAGGTTGACACCCGGC 62.386 60.000 0.00 0.00 45.63 6.13
426 427 0.323629 ATACACAGGTTGACACCCGG 59.676 55.000 0.00 0.00 45.63 5.73
427 428 3.536956 ATATACACAGGTTGACACCCG 57.463 47.619 0.00 0.00 45.63 5.28
468 469 9.708092 GAAACTTCCCTGGTATGATAAGTATAC 57.292 37.037 0.00 0.00 0.00 1.47
527 528 7.671495 AAATGGGCTGAAAATGTTATTTGAC 57.329 32.000 0.00 0.00 0.00 3.18
564 565 8.432359 CAAAAACTTGGACACTTACAGTTTTTC 58.568 33.333 14.94 0.00 42.34 2.29
570 571 5.588648 TCCTCAAAAACTTGGACACTTACAG 59.411 40.000 0.00 0.00 0.00 2.74
584 585 9.313118 ACATTACTGTTGATTTTCCTCAAAAAC 57.687 29.630 0.00 0.00 36.92 2.43
590 591 8.784043 ACAAGTACATTACTGTTGATTTTCCTC 58.216 33.333 0.00 0.00 39.39 3.71
657 658 2.637872 ACCCCTCGAAGAAAATGTGAGA 59.362 45.455 0.00 0.00 34.09 3.27
668 669 4.392138 GTGAGAATTAACAACCCCTCGAAG 59.608 45.833 0.00 0.00 0.00 3.79
670 671 3.325425 TGTGAGAATTAACAACCCCTCGA 59.675 43.478 0.00 0.00 0.00 4.04
671 672 3.670625 TGTGAGAATTAACAACCCCTCG 58.329 45.455 0.00 0.00 0.00 4.63
692 693 9.431887 ACGTCTTGACTAACATTACAAACATAT 57.568 29.630 0.00 0.00 0.00 1.78
710 711 3.190744 CCACTAGTAAGCTGACGTCTTGA 59.809 47.826 17.92 0.00 0.00 3.02
711 712 3.057456 ACCACTAGTAAGCTGACGTCTTG 60.057 47.826 17.92 10.70 0.00 3.02
712 713 3.155501 ACCACTAGTAAGCTGACGTCTT 58.844 45.455 17.92 5.41 0.00 3.01
727 800 5.821470 CGATCTTCCACTTCTAGTACCACTA 59.179 44.000 0.00 0.00 0.00 2.74
733 806 4.205587 GGGACGATCTTCCACTTCTAGTA 58.794 47.826 19.12 0.00 37.40 1.82
734 807 3.025262 GGGACGATCTTCCACTTCTAGT 58.975 50.000 19.12 0.00 37.40 2.57
735 808 2.362717 GGGGACGATCTTCCACTTCTAG 59.637 54.545 19.12 0.00 35.97 2.43
840 914 2.344203 CGGGCAGAGTCTTCCGTCT 61.344 63.158 18.65 0.00 37.92 4.18
883 958 1.584495 GGGACGGCAAGCGATTTTT 59.416 52.632 0.00 0.00 0.00 1.94
884 959 2.340328 GGGGACGGCAAGCGATTTT 61.340 57.895 0.00 0.00 0.00 1.82
910 985 1.652947 GGAACCAGGGTTACCTCTCA 58.347 55.000 3.19 0.00 46.95 3.27
925 1000 2.943653 CGGCGAGTGTTTGGGAAC 59.056 61.111 0.00 0.00 36.29 3.62
926 1001 2.975799 GCGGCGAGTGTTTGGGAA 60.976 61.111 12.98 0.00 0.00 3.97
996 1071 0.552848 TGAAGGATTCCTCCATGGCC 59.447 55.000 6.96 0.00 46.93 5.36
1045 1120 2.827642 ATCGACGTCGGGGAGGTC 60.828 66.667 35.05 8.07 41.98 3.85
1046 1121 2.827642 GATCGACGTCGGGGAGGT 60.828 66.667 35.05 15.68 40.29 3.85
1047 1122 3.593794 GGATCGACGTCGGGGAGG 61.594 72.222 35.05 8.84 40.29 4.30
1048 1123 3.593794 GGGATCGACGTCGGGGAG 61.594 72.222 35.05 9.62 40.29 4.30
1219 2209 3.061848 GGTGGCGTTGATGGGGTG 61.062 66.667 0.00 0.00 0.00 4.61
1225 2215 2.668185 TTCACGGTGGTGGCGTTGAT 62.668 55.000 8.50 0.00 44.50 2.57
1410 2400 1.003580 GATGTGCCAGTTCTGAAGGGA 59.996 52.381 11.18 0.00 0.00 4.20
1468 2524 0.106819 GATCTGATGGTGGGCTTGCT 60.107 55.000 0.00 0.00 0.00 3.91
1569 2625 1.144057 CCGACCCAGGGAAAGATCG 59.856 63.158 14.54 10.73 0.00 3.69
1625 2684 1.660355 GTGCTCCACTCGTCTGTCA 59.340 57.895 0.00 0.00 0.00 3.58
1645 2704 1.199327 CTCCTTCAGCTGCACATGTTG 59.801 52.381 9.47 0.00 0.00 3.33
1719 2799 1.677552 GTCGACCCATCCCACTGTT 59.322 57.895 3.51 0.00 0.00 3.16
1725 2805 2.435693 CCAGAGGTCGACCCATCCC 61.436 68.421 30.82 14.60 36.42 3.85
2344 3448 2.102420 TGACTTCCAGCGACTTCTTCAA 59.898 45.455 0.00 0.00 0.00 2.69
2345 3449 1.686587 TGACTTCCAGCGACTTCTTCA 59.313 47.619 0.00 0.00 0.00 3.02
2508 3800 9.606631 AATTAGTTTGGCAAATGTTTTTCAGTA 57.393 25.926 16.74 0.00 0.00 2.74
2569 3863 3.233507 AGGCAAAATGTCAGGTGTCATT 58.766 40.909 0.00 0.00 35.81 2.57
2608 3902 4.453751 TGCTGCAACTTGCTCATCATATA 58.546 39.130 14.78 0.00 45.31 0.86
2611 3905 1.472878 CTGCTGCAACTTGCTCATCAT 59.527 47.619 14.78 0.00 45.31 2.45
2641 3935 2.039480 TCTGCTGCAACTTCCTCATTCT 59.961 45.455 3.02 0.00 0.00 2.40
2669 3963 3.719268 TCATTAGGCACACCATTCTGT 57.281 42.857 0.00 0.00 39.06 3.41
2766 4077 4.433186 TTAACAGATGGCAAAATGGACG 57.567 40.909 0.00 0.00 0.00 4.79
2885 4308 2.534298 CTGCTGATAGTCGTCTTGGTG 58.466 52.381 0.00 0.00 0.00 4.17
2890 4313 1.950909 GGTAGCTGCTGATAGTCGTCT 59.049 52.381 13.43 0.00 0.00 4.18
3026 4449 7.431668 AGTTAAATATCGCGAGTCAAGAACTAC 59.568 37.037 16.66 3.13 38.74 2.73
3152 4630 6.127140 ACGGATATTTGCTTCCTAACTACAGT 60.127 38.462 0.00 0.00 0.00 3.55
3172 4650 6.266168 TGCAAGAACATAAATTCAACGGAT 57.734 33.333 0.00 0.00 0.00 4.18
3357 4840 3.189287 CCTTATGCCATAAGCCGCTAAAG 59.811 47.826 17.31 0.00 42.71 1.85
3504 5923 4.247267 TCTTTTGGCAGCTTCTGAAATG 57.753 40.909 0.00 0.00 32.44 2.32
3594 8229 8.140628 TGCTTATAAGTTGAATGAAACTTTGCA 58.859 29.630 13.91 11.98 42.29 4.08
3626 8261 5.476945 AGAAAGGCCGACATAAACTTTGATT 59.523 36.000 0.00 0.00 32.07 2.57
3859 9928 8.950210 ACAGTGAATACTCAAAAGTTCCATATG 58.050 33.333 0.00 0.00 36.92 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.