Multiple sequence alignment - TraesCS7D01G416800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G416800 chr7D 100.000 2915 0 0 1 2915 535660456 535657542 0.000000e+00 5384.0
1 TraesCS7D01G416800 chr7D 88.571 70 8 0 2556 2625 129493607 129493676 5.180000e-13 86.1
2 TraesCS7D01G416800 chr7D 100.000 35 0 0 1632 1666 228985862 228985828 6.740000e-07 65.8
3 TraesCS7D01G416800 chr7A 89.596 2451 134 59 136 2508 617947945 617950352 0.000000e+00 3001.0
4 TraesCS7D01G416800 chr7A 96.875 64 2 0 2847 2910 617950686 617950749 1.100000e-19 108.0
5 TraesCS7D01G416800 chr7A 81.481 81 13 2 1632 1711 240956713 240956634 6.740000e-07 65.8
6 TraesCS7D01G416800 chr7B 91.964 1991 68 44 555 2498 577373542 577371597 0.000000e+00 2706.0
7 TraesCS7D01G416800 chr7B 100.000 35 0 0 1632 1666 199855743 199855709 6.740000e-07 65.8
8 TraesCS7D01G416800 chr5B 83.007 153 16 2 2497 2640 252334535 252334686 2.360000e-26 130.0
9 TraesCS7D01G416800 chr5B 80.503 159 21 6 2492 2640 688122826 688122668 2.370000e-21 113.0
10 TraesCS7D01G416800 chr5B 81.746 126 13 3 2524 2640 340057397 340057521 2.390000e-16 97.1
11 TraesCS7D01G416800 chr5B 93.478 46 3 0 1628 1673 462883272 462883227 5.210000e-08 69.4
12 TraesCS7D01G416800 chr5D 82.468 154 17 2 2496 2640 558907471 558907319 3.050000e-25 126.0
13 TraesCS7D01G416800 chr5D 95.652 46 2 0 1628 1673 385604583 385604538 1.120000e-09 75.0
14 TraesCS7D01G416800 chr5D 85.135 74 4 2 2783 2849 464616627 464616554 5.210000e-08 69.4
15 TraesCS7D01G416800 chr3D 82.051 156 18 3 2494 2640 119734282 119734436 1.100000e-24 124.0
16 TraesCS7D01G416800 chr3D 100.000 33 0 0 2783 2815 153142330 153142362 8.720000e-06 62.1
17 TraesCS7D01G416800 chr3D 100.000 30 0 0 2783 2812 611547772 611547801 4.060000e-04 56.5
18 TraesCS7D01G416800 chr4B 81.132 159 16 6 2496 2640 596125603 596125445 6.600000e-22 115.0
19 TraesCS7D01G416800 chr4B 79.085 153 19 5 2496 2638 89468090 89467941 3.090000e-15 93.5
20 TraesCS7D01G416800 chr4B 83.544 79 6 1 2783 2854 471305357 471305279 1.870000e-07 67.6
21 TraesCS7D01G416800 chr2B 81.457 151 18 4 2494 2635 540332861 540333010 6.600000e-22 115.0
22 TraesCS7D01G416800 chr2B 85.882 85 9 2 2556 2640 483461856 483461775 1.440000e-13 87.9
23 TraesCS7D01G416800 chr2B 100.000 28 0 0 2546 2573 518307705 518307678 5.000000e-03 52.8
24 TraesCS7D01G416800 chr5A 80.795 151 19 3 2497 2638 42114895 42115044 3.070000e-20 110.0
25 TraesCS7D01G416800 chr5A 79.739 153 20 4 2497 2640 244448143 244447993 1.850000e-17 100.0
26 TraesCS7D01G416800 chr5A 77.632 152 21 9 1524 1673 487365626 487365486 2.410000e-11 80.5
27 TraesCS7D01G416800 chr6B 89.286 84 8 1 2557 2640 45983071 45983153 1.430000e-18 104.0
28 TraesCS7D01G416800 chr6D 91.429 70 3 2 2783 2849 28941981 28941912 3.090000e-15 93.5
29 TraesCS7D01G416800 chr3A 85.333 75 4 2 2783 2850 151000087 151000161 1.450000e-08 71.3
30 TraesCS7D01G416800 chr2D 100.000 31 0 0 2784 2814 610411638 610411608 1.130000e-04 58.4
31 TraesCS7D01G416800 chr2D 94.595 37 1 1 2783 2819 71775703 71775738 4.060000e-04 56.5
32 TraesCS7D01G416800 chr2A 94.595 37 1 1 2783 2819 779660839 779660804 4.060000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G416800 chr7D 535657542 535660456 2914 True 5384.0 5384 100.0000 1 2915 1 chr7D.!!$R2 2914
1 TraesCS7D01G416800 chr7A 617947945 617950749 2804 False 1554.5 3001 93.2355 136 2910 2 chr7A.!!$F1 2774
2 TraesCS7D01G416800 chr7B 577371597 577373542 1945 True 2706.0 2706 91.9640 555 2498 1 chr7B.!!$R2 1943

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
101 102 0.253044 TGGTAGCTTGTGGAGATGGC 59.747 55.0 0.00 0.00 0.00 4.40 F
105 106 0.403271 AGCTTGTGGAGATGGCAAGT 59.597 50.0 0.00 0.00 40.99 3.16 F
333 338 0.462789 AGGCCAGCAAATAAGCATGC 59.537 50.0 10.51 10.51 42.87 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1547 1629 1.003233 ACTTGCCGGAGAAGAAGCC 60.003 57.895 17.91 0.00 0.0 4.35 R
1606 1688 1.374947 GTCCTTGCTGCTGGTGGTA 59.625 57.895 0.00 0.00 0.0 3.25 R
2198 2296 2.092267 TGATCTGCATGCATACCTTGGT 60.092 45.455 22.97 3.98 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.676195 CAAAGAAACATTGTACATTATCACACA 57.324 29.630 0.00 0.00 0.00 3.72
27 28 9.677567 AAAGAAACATTGTACATTATCACACAC 57.322 29.630 0.00 0.00 0.00 3.82
28 29 7.816640 AGAAACATTGTACATTATCACACACC 58.183 34.615 0.00 0.00 0.00 4.16
29 30 7.446931 AGAAACATTGTACATTATCACACACCA 59.553 33.333 0.00 0.00 0.00 4.17
30 31 7.701539 AACATTGTACATTATCACACACCAT 57.298 32.000 0.00 0.00 0.00 3.55
31 32 7.701539 ACATTGTACATTATCACACACCATT 57.298 32.000 0.00 0.00 0.00 3.16
32 33 7.537715 ACATTGTACATTATCACACACCATTG 58.462 34.615 0.00 0.00 0.00 2.82
33 34 7.176515 ACATTGTACATTATCACACACCATTGT 59.823 33.333 0.00 0.00 35.84 2.71
47 48 4.389374 CACCATTGTGTCAAGAACCTAGT 58.611 43.478 0.00 0.00 37.72 2.57
48 49 4.214119 CACCATTGTGTCAAGAACCTAGTG 59.786 45.833 0.00 0.00 37.72 2.74
49 50 3.753272 CCATTGTGTCAAGAACCTAGTGG 59.247 47.826 0.00 0.00 39.83 4.00
50 51 3.485463 TTGTGTCAAGAACCTAGTGGG 57.515 47.619 0.00 0.00 41.89 4.61
51 52 1.697432 TGTGTCAAGAACCTAGTGGGG 59.303 52.381 0.00 0.00 40.03 4.96
52 53 1.975680 GTGTCAAGAACCTAGTGGGGA 59.024 52.381 0.00 0.00 40.03 4.81
53 54 2.572104 GTGTCAAGAACCTAGTGGGGAT 59.428 50.000 0.00 0.00 40.03 3.85
54 55 2.838202 TGTCAAGAACCTAGTGGGGATC 59.162 50.000 0.00 0.00 40.03 3.36
55 56 3.108376 GTCAAGAACCTAGTGGGGATCT 58.892 50.000 0.00 0.00 40.03 2.75
56 57 3.519913 GTCAAGAACCTAGTGGGGATCTT 59.480 47.826 9.24 9.24 42.30 2.40
57 58 3.775316 TCAAGAACCTAGTGGGGATCTTC 59.225 47.826 11.39 0.26 40.78 2.87
58 59 2.765502 AGAACCTAGTGGGGATCTTCC 58.234 52.381 0.00 0.00 40.03 3.46
69 70 1.726853 GGATCTTCCCATTATCCGCG 58.273 55.000 0.00 0.00 30.50 6.46
70 71 1.002087 GGATCTTCCCATTATCCGCGT 59.998 52.381 4.92 0.00 30.50 6.01
71 72 2.069273 GATCTTCCCATTATCCGCGTG 58.931 52.381 4.92 0.00 0.00 5.34
72 73 1.116308 TCTTCCCATTATCCGCGTGA 58.884 50.000 4.92 1.95 0.00 4.35
73 74 1.483004 TCTTCCCATTATCCGCGTGAA 59.517 47.619 4.92 0.00 0.00 3.18
74 75 2.093394 TCTTCCCATTATCCGCGTGAAA 60.093 45.455 4.92 0.00 0.00 2.69
75 76 1.658994 TCCCATTATCCGCGTGAAAC 58.341 50.000 4.92 0.00 0.00 2.78
76 77 1.208535 TCCCATTATCCGCGTGAAACT 59.791 47.619 4.92 0.00 31.75 2.66
77 78 1.597663 CCCATTATCCGCGTGAAACTC 59.402 52.381 4.92 0.00 31.75 3.01
78 79 1.257936 CCATTATCCGCGTGAAACTCG 59.742 52.381 4.92 0.00 46.04 4.18
79 80 1.924524 CATTATCCGCGTGAAACTCGT 59.075 47.619 4.92 0.00 44.79 4.18
80 81 2.068837 TTATCCGCGTGAAACTCGTT 57.931 45.000 4.92 0.00 44.79 3.85
81 82 1.342555 TATCCGCGTGAAACTCGTTG 58.657 50.000 4.92 0.00 44.79 4.10
82 83 0.599204 ATCCGCGTGAAACTCGTTGT 60.599 50.000 4.92 0.00 44.79 3.32
83 84 1.083657 CCGCGTGAAACTCGTTGTG 60.084 57.895 4.92 0.00 44.79 3.33
84 85 1.083657 CGCGTGAAACTCGTTGTGG 60.084 57.895 0.00 0.00 40.71 4.17
85 86 1.758319 CGCGTGAAACTCGTTGTGGT 61.758 55.000 0.00 0.00 40.71 4.16
86 87 1.210870 GCGTGAAACTCGTTGTGGTA 58.789 50.000 0.00 0.00 31.75 3.25
87 88 1.191647 GCGTGAAACTCGTTGTGGTAG 59.808 52.381 0.00 0.00 31.75 3.18
88 89 1.191647 CGTGAAACTCGTTGTGGTAGC 59.808 52.381 0.00 0.00 31.75 3.58
89 90 2.480845 GTGAAACTCGTTGTGGTAGCT 58.519 47.619 0.00 0.00 0.00 3.32
90 91 2.870411 GTGAAACTCGTTGTGGTAGCTT 59.130 45.455 0.00 0.00 0.00 3.74
91 92 2.869801 TGAAACTCGTTGTGGTAGCTTG 59.130 45.455 0.00 0.00 0.00 4.01
92 93 2.614829 AACTCGTTGTGGTAGCTTGT 57.385 45.000 0.00 0.00 0.00 3.16
93 94 1.865865 ACTCGTTGTGGTAGCTTGTG 58.134 50.000 0.00 0.00 0.00 3.33
94 95 1.148310 CTCGTTGTGGTAGCTTGTGG 58.852 55.000 0.00 0.00 0.00 4.17
95 96 0.753867 TCGTTGTGGTAGCTTGTGGA 59.246 50.000 0.00 0.00 0.00 4.02
96 97 1.148310 CGTTGTGGTAGCTTGTGGAG 58.852 55.000 0.00 0.00 0.00 3.86
97 98 1.270094 CGTTGTGGTAGCTTGTGGAGA 60.270 52.381 0.00 0.00 0.00 3.71
98 99 2.612972 CGTTGTGGTAGCTTGTGGAGAT 60.613 50.000 0.00 0.00 0.00 2.75
99 100 2.744202 GTTGTGGTAGCTTGTGGAGATG 59.256 50.000 0.00 0.00 0.00 2.90
100 101 1.278985 TGTGGTAGCTTGTGGAGATGG 59.721 52.381 0.00 0.00 0.00 3.51
101 102 0.253044 TGGTAGCTTGTGGAGATGGC 59.747 55.000 0.00 0.00 0.00 4.40
102 103 0.253044 GGTAGCTTGTGGAGATGGCA 59.747 55.000 0.00 0.00 0.00 4.92
103 104 1.340017 GGTAGCTTGTGGAGATGGCAA 60.340 52.381 0.00 0.00 0.00 4.52
104 105 2.012673 GTAGCTTGTGGAGATGGCAAG 58.987 52.381 0.00 0.00 41.61 4.01
105 106 0.403271 AGCTTGTGGAGATGGCAAGT 59.597 50.000 0.00 0.00 40.99 3.16
106 107 0.524862 GCTTGTGGAGATGGCAAGTG 59.475 55.000 0.00 0.00 40.99 3.16
107 108 1.883638 GCTTGTGGAGATGGCAAGTGA 60.884 52.381 0.00 0.00 40.99 3.41
108 109 2.719739 CTTGTGGAGATGGCAAGTGAT 58.280 47.619 0.00 0.00 36.00 3.06
109 110 2.118313 TGTGGAGATGGCAAGTGATG 57.882 50.000 0.00 0.00 0.00 3.07
110 111 1.340308 TGTGGAGATGGCAAGTGATGG 60.340 52.381 0.00 0.00 0.00 3.51
111 112 0.994247 TGGAGATGGCAAGTGATGGT 59.006 50.000 0.00 0.00 0.00 3.55
112 113 2.092968 GTGGAGATGGCAAGTGATGGTA 60.093 50.000 0.00 0.00 0.00 3.25
113 114 2.092968 TGGAGATGGCAAGTGATGGTAC 60.093 50.000 0.00 0.00 0.00 3.34
114 115 2.171448 GGAGATGGCAAGTGATGGTACT 59.829 50.000 0.00 0.00 0.00 2.73
115 116 3.201290 GAGATGGCAAGTGATGGTACTG 58.799 50.000 0.00 0.00 0.00 2.74
116 117 2.840038 AGATGGCAAGTGATGGTACTGA 59.160 45.455 0.00 0.00 0.00 3.41
117 118 2.472695 TGGCAAGTGATGGTACTGAC 57.527 50.000 0.00 0.00 0.00 3.51
118 119 1.696884 TGGCAAGTGATGGTACTGACA 59.303 47.619 0.00 0.00 0.00 3.58
119 120 2.076863 GGCAAGTGATGGTACTGACAC 58.923 52.381 0.00 1.08 0.00 3.67
120 121 1.726791 GCAAGTGATGGTACTGACACG 59.273 52.381 0.00 0.00 38.15 4.49
121 122 2.866460 GCAAGTGATGGTACTGACACGT 60.866 50.000 0.00 0.00 38.15 4.49
122 123 2.987149 CAAGTGATGGTACTGACACGTC 59.013 50.000 0.00 0.00 38.15 4.34
123 124 2.515854 AGTGATGGTACTGACACGTCT 58.484 47.619 0.00 0.00 38.15 4.18
124 125 2.891580 AGTGATGGTACTGACACGTCTT 59.108 45.455 0.00 0.00 38.15 3.01
125 126 3.321111 AGTGATGGTACTGACACGTCTTT 59.679 43.478 0.00 0.00 38.15 2.52
126 127 4.056050 GTGATGGTACTGACACGTCTTTT 58.944 43.478 0.00 0.00 0.00 2.27
127 128 5.010314 AGTGATGGTACTGACACGTCTTTTA 59.990 40.000 0.00 0.00 38.15 1.52
128 129 5.345202 GTGATGGTACTGACACGTCTTTTAG 59.655 44.000 0.00 0.00 0.00 1.85
129 130 3.645884 TGGTACTGACACGTCTTTTAGC 58.354 45.455 0.00 0.00 0.00 3.09
130 131 3.068448 TGGTACTGACACGTCTTTTAGCA 59.932 43.478 0.00 1.04 0.00 3.49
131 132 4.243270 GGTACTGACACGTCTTTTAGCAT 58.757 43.478 0.00 0.00 0.00 3.79
132 133 5.047872 TGGTACTGACACGTCTTTTAGCATA 60.048 40.000 0.00 0.00 0.00 3.14
133 134 6.040878 GGTACTGACACGTCTTTTAGCATAT 58.959 40.000 0.00 0.00 0.00 1.78
134 135 6.534079 GGTACTGACACGTCTTTTAGCATATT 59.466 38.462 0.00 0.00 0.00 1.28
140 141 7.762159 TGACACGTCTTTTAGCATATTGTGATA 59.238 33.333 0.00 0.00 0.00 2.15
144 145 8.114290 ACGTCTTTTAGCATATTGTGATAAACG 58.886 33.333 10.53 10.53 45.41 3.60
157 158 6.331170 TGTGATAAACGAAGATGATTCACG 57.669 37.500 0.00 0.00 36.03 4.35
165 166 6.363577 ACGAAGATGATTCACGCAATAAAT 57.636 33.333 0.00 0.00 0.00 1.40
172 173 9.669353 AGATGATTCACGCAATAAATGTATTTC 57.331 29.630 0.00 0.00 0.00 2.17
173 174 8.801715 ATGATTCACGCAATAAATGTATTTCC 57.198 30.769 0.00 0.00 0.00 3.13
174 175 7.766283 TGATTCACGCAATAAATGTATTTCCA 58.234 30.769 0.00 0.00 0.00 3.53
175 176 7.700234 TGATTCACGCAATAAATGTATTTCCAC 59.300 33.333 0.00 0.00 0.00 4.02
177 178 5.416013 TCACGCAATAAATGTATTTCCACCA 59.584 36.000 0.00 0.00 0.00 4.17
179 180 6.756074 CACGCAATAAATGTATTTCCACCAAT 59.244 34.615 0.00 0.00 0.00 3.16
189 191 9.645128 AATGTATTTCCACCAATGAGAATATGA 57.355 29.630 0.00 0.00 0.00 2.15
218 220 4.389890 TGGCATCCATTAACATTCAAGC 57.610 40.909 0.00 0.00 0.00 4.01
220 222 3.374745 GCATCCATTAACATTCAAGCGG 58.625 45.455 0.00 0.00 0.00 5.52
244 246 2.992124 TTCGTTCAAAGAGACCACCA 57.008 45.000 0.00 0.00 0.00 4.17
270 272 4.514781 CATGGATGATGGGCAATGTAAG 57.485 45.455 0.00 0.00 0.00 2.34
274 279 2.804986 TGATGGGCAATGTAAGCAGA 57.195 45.000 0.00 0.00 0.00 4.26
286 291 1.000607 GTAAGCAGACCGTCACTCACA 60.001 52.381 0.40 0.00 0.00 3.58
297 302 4.000325 CCGTCACTCACAAATCACCATAA 59.000 43.478 0.00 0.00 0.00 1.90
308 313 5.156355 CAAATCACCATAACAAGTCTGTGC 58.844 41.667 0.00 0.00 35.37 4.57
311 316 2.805671 CACCATAACAAGTCTGTGCGAA 59.194 45.455 0.00 0.00 35.37 4.70
312 317 3.249799 CACCATAACAAGTCTGTGCGAAA 59.750 43.478 0.00 0.00 35.37 3.46
313 318 3.880490 ACCATAACAAGTCTGTGCGAAAA 59.120 39.130 0.00 0.00 35.37 2.29
321 326 1.372128 CTGTGCGAAAAAGGCCAGC 60.372 57.895 5.01 0.54 0.00 4.85
333 338 0.462789 AGGCCAGCAAATAAGCATGC 59.537 50.000 10.51 10.51 42.87 4.06
342 347 6.019152 CAGCAAATAAGCATGCAAACAAATC 58.981 36.000 21.98 2.42 44.95 2.17
345 350 7.063780 AGCAAATAAGCATGCAAACAAATCTAC 59.936 33.333 21.98 0.00 44.95 2.59
355 362 7.202016 TGCAAACAAATCTACAAGACCTAAG 57.798 36.000 0.00 0.00 0.00 2.18
356 363 6.995686 TGCAAACAAATCTACAAGACCTAAGA 59.004 34.615 0.00 0.00 0.00 2.10
357 364 7.041372 TGCAAACAAATCTACAAGACCTAAGAC 60.041 37.037 0.00 0.00 0.00 3.01
358 365 7.041372 GCAAACAAATCTACAAGACCTAAGACA 60.041 37.037 0.00 0.00 0.00 3.41
377 390 4.406003 AGACATAAGGATTTGTCGCTAGGT 59.594 41.667 0.00 0.00 45.42 3.08
380 393 1.568504 AGGATTTGTCGCTAGGTCCA 58.431 50.000 0.00 0.00 0.00 4.02
382 395 2.304761 AGGATTTGTCGCTAGGTCCAAA 59.695 45.455 0.00 0.00 0.00 3.28
384 397 3.065371 GGATTTGTCGCTAGGTCCAAATG 59.935 47.826 0.00 0.00 37.57 2.32
390 403 1.539388 CGCTAGGTCCAAATGCAAACA 59.461 47.619 0.00 0.00 0.00 2.83
397 410 5.540911 AGGTCCAAATGCAAACATAACAAG 58.459 37.500 0.00 0.00 34.62 3.16
402 415 5.406175 CCAAATGCAAACATAACAAGAGTGG 59.594 40.000 0.00 0.00 34.62 4.00
405 418 2.668279 GCAAACATAACAAGAGTGGCCG 60.668 50.000 0.00 0.00 0.00 6.13
407 420 2.386661 ACATAACAAGAGTGGCCGAG 57.613 50.000 0.00 0.00 0.00 4.63
416 429 2.047179 GTGGCCGAGGTGAACTCC 60.047 66.667 0.00 0.00 43.57 3.85
422 435 1.486211 CCGAGGTGAACTCCCTACAT 58.514 55.000 0.00 0.00 43.57 2.29
423 436 2.662866 CCGAGGTGAACTCCCTACATA 58.337 52.381 0.00 0.00 43.57 2.29
425 438 3.288964 CGAGGTGAACTCCCTACATAGT 58.711 50.000 0.00 0.00 43.57 2.12
427 440 3.375699 AGGTGAACTCCCTACATAGTGG 58.624 50.000 0.00 0.00 0.00 4.00
428 441 2.158943 GGTGAACTCCCTACATAGTGGC 60.159 54.545 0.00 0.00 0.00 5.01
429 442 2.500098 GTGAACTCCCTACATAGTGGCA 59.500 50.000 0.00 0.00 0.00 4.92
430 443 3.134804 GTGAACTCCCTACATAGTGGCAT 59.865 47.826 0.00 0.00 0.00 4.40
431 444 3.780294 TGAACTCCCTACATAGTGGCATT 59.220 43.478 0.00 0.00 0.00 3.56
432 445 3.845781 ACTCCCTACATAGTGGCATTG 57.154 47.619 0.00 0.00 0.00 2.82
433 446 2.439507 ACTCCCTACATAGTGGCATTGG 59.560 50.000 0.00 0.00 0.00 3.16
434 447 1.774254 TCCCTACATAGTGGCATTGGG 59.226 52.381 0.00 0.00 34.98 4.12
441 473 0.908910 TAGTGGCATTGGGACATCGT 59.091 50.000 0.00 0.00 36.47 3.73
446 478 2.029470 TGGCATTGGGACATCGTTTTTC 60.029 45.455 0.00 0.00 39.30 2.29
453 485 2.742589 GGGACATCGTTTTTCTGACTCC 59.257 50.000 0.00 0.00 0.00 3.85
456 488 4.065789 GACATCGTTTTTCTGACTCCCTT 58.934 43.478 0.00 0.00 0.00 3.95
458 490 2.750948 TCGTTTTTCTGACTCCCTTCG 58.249 47.619 0.00 0.00 0.00 3.79
461 493 2.814336 GTTTTTCTGACTCCCTTCGCAT 59.186 45.455 0.00 0.00 0.00 4.73
462 494 2.859165 TTTCTGACTCCCTTCGCATT 57.141 45.000 0.00 0.00 0.00 3.56
463 495 2.859165 TTCTGACTCCCTTCGCATTT 57.141 45.000 0.00 0.00 0.00 2.32
464 496 3.973206 TTCTGACTCCCTTCGCATTTA 57.027 42.857 0.00 0.00 0.00 1.40
471 503 5.941058 TGACTCCCTTCGCATTTATAAACAA 59.059 36.000 0.00 0.00 0.00 2.83
501 538 7.656707 ACAACATCCAACATCTTTTTATTGC 57.343 32.000 0.00 0.00 0.00 3.56
502 539 7.215789 ACAACATCCAACATCTTTTTATTGCA 58.784 30.769 0.00 0.00 0.00 4.08
503 540 7.714377 ACAACATCCAACATCTTTTTATTGCAA 59.286 29.630 0.00 0.00 0.00 4.08
505 542 8.674263 ACATCCAACATCTTTTTATTGCAAAA 57.326 26.923 1.71 0.00 0.00 2.44
506 543 9.118300 ACATCCAACATCTTTTTATTGCAAAAA 57.882 25.926 1.71 2.96 0.00 1.94
509 546 9.947669 TCCAACATCTTTTTATTGCAAAAATTG 57.052 25.926 1.71 2.02 0.00 2.32
510 547 9.733219 CCAACATCTTTTTATTGCAAAAATTGT 57.267 25.926 1.71 4.41 32.05 2.71
512 549 8.785468 ACATCTTTTTATTGCAAAAATTGTGC 57.215 26.923 1.71 0.23 42.55 4.57
515 555 6.911511 TCTTTTTATTGCAAAAATTGTGCTGC 59.088 30.769 9.77 0.00 42.69 5.25
523 563 7.670009 TGCAAAAATTGTGCTGCTATTAATT 57.330 28.000 9.77 0.25 42.69 1.40
524 564 8.768957 TGCAAAAATTGTGCTGCTATTAATTA 57.231 26.923 9.77 0.00 42.69 1.40
529 569 7.744087 AATTGTGCTGCTATTAATTATCGGA 57.256 32.000 0.00 0.00 0.00 4.55
552 592 0.962356 AACCTTCCCTGCTCAATGCG 60.962 55.000 0.00 0.00 46.63 4.73
553 593 1.078214 CCTTCCCTGCTCAATGCGA 60.078 57.895 0.00 0.00 46.63 5.10
555 595 1.167851 CTTCCCTGCTCAATGCGAAA 58.832 50.000 0.00 0.00 46.63 3.46
556 596 1.541147 CTTCCCTGCTCAATGCGAAAA 59.459 47.619 0.00 0.00 46.63 2.29
558 598 2.170166 TCCCTGCTCAATGCGAAAAAT 58.830 42.857 0.00 0.00 46.63 1.82
559 599 2.562298 TCCCTGCTCAATGCGAAAAATT 59.438 40.909 0.00 0.00 46.63 1.82
586 626 1.309499 TGGCAAGAAATTACGCGGGG 61.309 55.000 12.47 0.00 0.00 5.73
589 629 1.404035 GCAAGAAATTACGCGGGGAAT 59.596 47.619 12.47 3.67 0.00 3.01
602 642 2.164827 GCGGGGAATTTTACGGAAATGT 59.835 45.455 0.00 0.00 37.98 2.71
605 645 4.438200 CGGGGAATTTTACGGAAATGTGAG 60.438 45.833 0.00 0.00 37.98 3.51
1014 1074 2.742372 GCGATGTCCGTTGTGGCT 60.742 61.111 0.00 0.00 41.15 4.75
1151 1217 2.123033 GGAGGAGGAGGAGGAGGC 60.123 72.222 0.00 0.00 0.00 4.70
1411 1489 3.244911 CGCCCTCCCCATCAAGTAATTAT 60.245 47.826 0.00 0.00 0.00 1.28
1433 1511 1.204113 AGCTTCACCTCCCTTCCCTG 61.204 60.000 0.00 0.00 0.00 4.45
1435 1513 1.362224 CTTCACCTCCCTTCCCTGAA 58.638 55.000 0.00 0.00 0.00 3.02
1436 1514 1.918957 CTTCACCTCCCTTCCCTGAAT 59.081 52.381 0.00 0.00 0.00 2.57
1437 1515 2.059756 TCACCTCCCTTCCCTGAATT 57.940 50.000 0.00 0.00 0.00 2.17
1476 1558 3.826729 ACCCTACCAATTCTTGCAAGAAC 59.173 43.478 37.28 0.00 46.80 3.01
1477 1559 3.826157 CCCTACCAATTCTTGCAAGAACA 59.174 43.478 37.28 21.79 46.80 3.18
1478 1560 4.280677 CCCTACCAATTCTTGCAAGAACAA 59.719 41.667 37.28 21.08 46.80 2.83
1479 1561 5.047092 CCCTACCAATTCTTGCAAGAACAAT 60.047 40.000 37.28 25.25 46.80 2.71
1491 1573 3.670627 GCAAGAACAATCGGCGAATTCTT 60.671 43.478 27.42 27.42 39.58 2.52
1512 1594 1.362768 GTTCGGTCGGTGGGTTAATC 58.637 55.000 0.00 0.00 0.00 1.75
1870 1961 9.875675 GATATCAGATTGATCGAAAAGGAAAAG 57.124 33.333 0.00 0.00 38.26 2.27
1932 2023 3.585732 TGGAAACAAACTACTAGGGAGGG 59.414 47.826 0.00 0.00 37.44 4.30
2055 2150 6.974932 TCTTGATTCTTTTACTAGCTGCTG 57.025 37.500 13.43 4.99 0.00 4.41
2133 2228 5.246203 GTGATATCCATCCTAGCCTACAACA 59.754 44.000 0.00 0.00 0.00 3.33
2151 2246 4.036734 ACAACAAGTTATGCCAGTGTTCTG 59.963 41.667 0.00 0.00 41.01 3.02
2229 2327 3.506844 TGCATGCAGATCAAGCAAGTAAA 59.493 39.130 18.46 0.00 45.17 2.01
2277 2376 7.285629 TGTGTGTTCTAATCGATCTCTAGGATT 59.714 37.037 0.00 0.00 34.33 3.01
2280 2379 9.187455 GTGTTCTAATCGATCTCTAGGATTTTC 57.813 37.037 0.00 0.00 34.33 2.29
2281 2380 9.137459 TGTTCTAATCGATCTCTAGGATTTTCT 57.863 33.333 0.00 0.00 34.33 2.52
2388 2496 5.836898 CCCTATCTGTGTACTATGGTTGGTA 59.163 44.000 0.00 0.00 0.00 3.25
2406 2514 5.492855 TGGTAAAGTGGTGCTATTGTACT 57.507 39.130 0.00 0.00 0.00 2.73
2409 2517 7.626390 TGGTAAAGTGGTGCTATTGTACTTAT 58.374 34.615 0.00 0.00 31.85 1.73
2446 2554 4.618920 AGTACTATATCGGCAAAAGGGG 57.381 45.455 0.00 0.00 0.00 4.79
2501 2611 3.017442 GGGCCTCTTTGATTTGTACTCC 58.983 50.000 0.84 0.00 0.00 3.85
2504 2614 4.336280 GCCTCTTTGATTTGTACTCCCTT 58.664 43.478 0.00 0.00 0.00 3.95
2508 2618 5.617252 TCTTTGATTTGTACTCCCTTCGTT 58.383 37.500 0.00 0.00 0.00 3.85
2509 2619 5.699458 TCTTTGATTTGTACTCCCTTCGTTC 59.301 40.000 0.00 0.00 0.00 3.95
2510 2620 3.934068 TGATTTGTACTCCCTTCGTTCC 58.066 45.455 0.00 0.00 0.00 3.62
2512 2622 3.396260 TTTGTACTCCCTTCGTTCCTG 57.604 47.619 0.00 0.00 0.00 3.86
2513 2623 2.297698 TGTACTCCCTTCGTTCCTGA 57.702 50.000 0.00 0.00 0.00 3.86
2514 2624 2.600790 TGTACTCCCTTCGTTCCTGAA 58.399 47.619 0.00 0.00 0.00 3.02
2515 2625 3.170717 TGTACTCCCTTCGTTCCTGAAT 58.829 45.455 0.00 0.00 0.00 2.57
2516 2626 4.346730 TGTACTCCCTTCGTTCCTGAATA 58.653 43.478 0.00 0.00 0.00 1.75
2518 2628 6.131264 TGTACTCCCTTCGTTCCTGAATATA 58.869 40.000 0.00 0.00 0.00 0.86
2519 2629 6.781014 TGTACTCCCTTCGTTCCTGAATATAT 59.219 38.462 0.00 0.00 0.00 0.86
2522 2632 6.209788 ACTCCCTTCGTTCCTGAATATATCTC 59.790 42.308 0.00 0.00 0.00 2.75
2523 2633 6.315714 TCCCTTCGTTCCTGAATATATCTCT 58.684 40.000 0.00 0.00 0.00 3.10
2524 2634 6.782988 TCCCTTCGTTCCTGAATATATCTCTT 59.217 38.462 0.00 0.00 0.00 2.85
2554 2664 9.733556 AAATATTCCAACAAGTGACTACATACA 57.266 29.630 0.00 0.00 0.00 2.29
2555 2665 8.948631 ATATTCCAACAAGTGACTACATACAG 57.051 34.615 0.00 0.00 0.00 2.74
2556 2666 6.413783 TTCCAACAAGTGACTACATACAGA 57.586 37.500 0.00 0.00 0.00 3.41
2557 2667 6.025749 TCCAACAAGTGACTACATACAGAG 57.974 41.667 0.00 0.00 0.00 3.35
2558 2668 5.538813 TCCAACAAGTGACTACATACAGAGT 59.461 40.000 0.00 0.00 0.00 3.24
2559 2669 5.635280 CCAACAAGTGACTACATACAGAGTG 59.365 44.000 0.00 0.00 0.00 3.51
2560 2670 6.447162 CAACAAGTGACTACATACAGAGTGA 58.553 40.000 0.00 0.00 0.00 3.41
2561 2671 6.650427 ACAAGTGACTACATACAGAGTGAA 57.350 37.500 0.00 0.00 0.00 3.18
2565 2675 8.678199 CAAGTGACTACATACAGAGTGAATCTA 58.322 37.037 0.00 0.00 36.10 1.98
2568 2678 7.911205 GTGACTACATACAGAGTGAATCTACAC 59.089 40.741 0.00 0.00 36.10 2.90
2604 2714 7.408756 TTTACATACGTCCCTATGTTGTACT 57.591 36.000 6.97 0.00 38.18 2.73
2605 2715 5.511234 ACATACGTCCCTATGTTGTACTC 57.489 43.478 0.00 0.00 34.26 2.59
2607 2717 2.811410 ACGTCCCTATGTTGTACTCCA 58.189 47.619 0.00 0.00 0.00 3.86
2610 2720 4.224370 ACGTCCCTATGTTGTACTCCATTT 59.776 41.667 0.00 0.00 0.00 2.32
2611 2721 4.570772 CGTCCCTATGTTGTACTCCATTTG 59.429 45.833 0.00 0.00 0.00 2.32
2612 2722 5.625886 CGTCCCTATGTTGTACTCCATTTGA 60.626 44.000 0.00 0.00 0.00 2.69
2613 2723 6.177610 GTCCCTATGTTGTACTCCATTTGAA 58.822 40.000 0.00 0.00 0.00 2.69
2616 2726 7.339212 TCCCTATGTTGTACTCCATTTGAAATG 59.661 37.037 10.84 10.84 0.00 2.32
2617 2727 7.122650 CCCTATGTTGTACTCCATTTGAAATGT 59.877 37.037 15.93 1.43 0.00 2.71
2618 2728 8.522830 CCTATGTTGTACTCCATTTGAAATGTT 58.477 33.333 15.93 3.68 0.00 2.71
2657 2767 5.945144 TTAGGTCCCTATGTTTGTACTCC 57.055 43.478 0.00 0.00 0.00 3.85
2658 2768 3.798515 AGGTCCCTATGTTTGTACTCCA 58.201 45.455 0.00 0.00 0.00 3.86
2659 2769 4.371681 AGGTCCCTATGTTTGTACTCCAT 58.628 43.478 0.00 0.00 0.00 3.41
2660 2770 4.788617 AGGTCCCTATGTTTGTACTCCATT 59.211 41.667 0.00 0.00 0.00 3.16
2661 2771 5.253096 AGGTCCCTATGTTTGTACTCCATTT 59.747 40.000 0.00 0.00 0.00 2.32
2662 2772 5.357032 GGTCCCTATGTTTGTACTCCATTTG 59.643 44.000 0.00 0.00 0.00 2.32
2666 2776 7.893302 TCCCTATGTTTGTACTCCATTTGAAAT 59.107 33.333 0.00 0.00 0.00 2.17
2667 2777 7.975616 CCCTATGTTTGTACTCCATTTGAAATG 59.024 37.037 10.84 10.84 0.00 2.32
2668 2778 8.522830 CCTATGTTTGTACTCCATTTGAAATGT 58.477 33.333 15.93 1.43 0.00 2.71
2721 2831 7.543947 AAAAACTTATATTTAGGACCGGACG 57.456 36.000 9.46 0.00 0.00 4.79
2723 2833 4.473444 ACTTATATTTAGGACCGGACGGA 58.527 43.478 18.80 0.00 38.96 4.69
2767 2967 9.916397 CATGAACAGAAAATAATAACGTACTCC 57.084 33.333 0.00 0.00 0.00 3.85
2768 2968 8.483307 TGAACAGAAAATAATAACGTACTCCC 57.517 34.615 0.00 0.00 0.00 4.30
2769 2969 8.316214 TGAACAGAAAATAATAACGTACTCCCT 58.684 33.333 0.00 0.00 0.00 4.20
2770 2970 8.713737 AACAGAAAATAATAACGTACTCCCTC 57.286 34.615 0.00 0.00 0.00 4.30
2771 2971 8.075761 ACAGAAAATAATAACGTACTCCCTCT 57.924 34.615 0.00 0.00 0.00 3.69
2772 2972 8.537858 ACAGAAAATAATAACGTACTCCCTCTT 58.462 33.333 0.00 0.00 0.00 2.85
2773 2973 9.379791 CAGAAAATAATAACGTACTCCCTCTTT 57.620 33.333 0.00 0.00 0.00 2.52
2825 3025 9.303537 GTTTAGATCATTAGTTCTAAACGCTCT 57.696 33.333 15.66 1.80 46.37 4.09
2826 3026 9.871238 TTTAGATCATTAGTTCTAAACGCTCTT 57.129 29.630 0.00 0.00 39.41 2.85
2827 3027 7.763172 AGATCATTAGTTCTAAACGCTCTTG 57.237 36.000 0.00 0.00 36.23 3.02
2828 3028 7.324178 AGATCATTAGTTCTAAACGCTCTTGT 58.676 34.615 0.00 0.00 36.23 3.16
2829 3029 8.467598 AGATCATTAGTTCTAAACGCTCTTGTA 58.532 33.333 0.00 0.00 36.23 2.41
2830 3030 9.250624 GATCATTAGTTCTAAACGCTCTTGTAT 57.749 33.333 0.00 0.00 36.23 2.29
2831 3031 8.997621 TCATTAGTTCTAAACGCTCTTGTATT 57.002 30.769 0.00 0.00 36.23 1.89
2834 3034 8.922058 TTAGTTCTAAACGCTCTTGTATTAGG 57.078 34.615 0.00 0.00 36.23 2.69
2835 3035 6.932947 AGTTCTAAACGCTCTTGTATTAGGT 58.067 36.000 0.00 0.00 36.23 3.08
2836 3036 7.384477 AGTTCTAAACGCTCTTGTATTAGGTT 58.616 34.615 0.00 0.00 36.23 3.50
2837 3037 8.526147 AGTTCTAAACGCTCTTGTATTAGGTTA 58.474 33.333 0.00 0.00 36.23 2.85
2838 3038 8.590470 GTTCTAAACGCTCTTGTATTAGGTTAC 58.410 37.037 0.00 0.00 0.00 2.50
2839 3039 7.829725 TCTAAACGCTCTTGTATTAGGTTACA 58.170 34.615 0.00 0.00 0.00 2.41
2840 3040 6.963049 AAACGCTCTTGTATTAGGTTACAG 57.037 37.500 0.00 0.00 33.81 2.74
2841 3041 5.909621 ACGCTCTTGTATTAGGTTACAGA 57.090 39.130 0.00 0.00 33.81 3.41
2842 3042 5.892568 ACGCTCTTGTATTAGGTTACAGAG 58.107 41.667 0.00 0.00 33.81 3.35
2843 3043 5.163540 ACGCTCTTGTATTAGGTTACAGAGG 60.164 44.000 0.00 0.00 33.81 3.69
2844 3044 5.067413 CGCTCTTGTATTAGGTTACAGAGGA 59.933 44.000 0.00 0.00 33.81 3.71
2845 3045 6.405508 CGCTCTTGTATTAGGTTACAGAGGAA 60.406 42.308 0.00 0.00 33.81 3.36
2863 3063 7.400339 ACAGAGGAAGTAGGACTGAAATATCAA 59.600 37.037 0.00 0.00 34.49 2.57
2900 3100 7.702348 GGTCTATATGATTTGGCTTGTTGTTTC 59.298 37.037 0.00 0.00 0.00 2.78
2910 3110 3.052036 GCTTGTTGTTTCATTGCGTCAT 58.948 40.909 0.00 0.00 0.00 3.06
2911 3111 4.225984 GCTTGTTGTTTCATTGCGTCATA 58.774 39.130 0.00 0.00 0.00 2.15
2912 3112 4.321745 GCTTGTTGTTTCATTGCGTCATAG 59.678 41.667 0.00 0.00 0.00 2.23
2913 3113 5.681337 TTGTTGTTTCATTGCGTCATAGA 57.319 34.783 0.00 0.00 0.00 1.98
2914 3114 5.681337 TGTTGTTTCATTGCGTCATAGAA 57.319 34.783 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.676195 TGTGTGATAATGTACAATGTTTCTTTG 57.324 29.630 0.00 0.00 0.00 2.77
4 5 7.589395 TGGTGTGTGATAATGTACAATGTTTC 58.411 34.615 0.00 0.00 0.00 2.78
6 7 7.701539 ATGGTGTGTGATAATGTACAATGTT 57.298 32.000 0.00 0.00 0.00 2.71
8 9 7.537715 ACAATGGTGTGTGATAATGTACAATG 58.462 34.615 0.00 0.00 36.31 2.82
26 27 4.389374 CACTAGGTTCTTGACACAATGGT 58.611 43.478 0.00 0.00 0.00 3.55
27 28 3.753272 CCACTAGGTTCTTGACACAATGG 59.247 47.826 0.00 0.00 0.00 3.16
28 29 3.753272 CCCACTAGGTTCTTGACACAATG 59.247 47.826 0.00 0.00 0.00 2.82
29 30 3.244911 CCCCACTAGGTTCTTGACACAAT 60.245 47.826 0.00 0.00 0.00 2.71
30 31 2.105821 CCCCACTAGGTTCTTGACACAA 59.894 50.000 0.00 0.00 0.00 3.33
31 32 1.697432 CCCCACTAGGTTCTTGACACA 59.303 52.381 0.00 0.00 0.00 3.72
32 33 1.975680 TCCCCACTAGGTTCTTGACAC 59.024 52.381 0.00 0.00 0.00 3.67
33 34 2.409064 TCCCCACTAGGTTCTTGACA 57.591 50.000 0.00 0.00 0.00 3.58
34 35 3.108376 AGATCCCCACTAGGTTCTTGAC 58.892 50.000 0.00 0.00 33.02 3.18
35 36 3.491766 AGATCCCCACTAGGTTCTTGA 57.508 47.619 0.00 0.00 33.02 3.02
36 37 3.118223 GGAAGATCCCCACTAGGTTCTTG 60.118 52.174 8.29 0.00 43.11 3.02
37 38 3.116174 GGAAGATCCCCACTAGGTTCTT 58.884 50.000 4.04 4.04 44.86 2.52
38 39 2.765502 GGAAGATCCCCACTAGGTTCT 58.234 52.381 0.00 0.00 37.53 3.01
50 51 1.002087 ACGCGGATAATGGGAAGATCC 59.998 52.381 12.47 0.00 36.55 3.36
51 52 2.069273 CACGCGGATAATGGGAAGATC 58.931 52.381 12.47 0.00 0.00 2.75
52 53 1.691976 TCACGCGGATAATGGGAAGAT 59.308 47.619 12.47 0.00 0.00 2.40
53 54 1.116308 TCACGCGGATAATGGGAAGA 58.884 50.000 12.47 0.00 0.00 2.87
54 55 1.948104 TTCACGCGGATAATGGGAAG 58.052 50.000 12.47 0.00 0.00 3.46
55 56 2.011222 GTTTCACGCGGATAATGGGAA 58.989 47.619 12.47 0.00 0.00 3.97
56 57 1.208535 AGTTTCACGCGGATAATGGGA 59.791 47.619 12.47 0.00 0.00 4.37
57 58 1.597663 GAGTTTCACGCGGATAATGGG 59.402 52.381 12.47 0.00 0.00 4.00
58 59 1.257936 CGAGTTTCACGCGGATAATGG 59.742 52.381 12.47 0.00 37.75 3.16
59 60 1.924524 ACGAGTTTCACGCGGATAATG 59.075 47.619 12.47 0.00 45.57 1.90
60 61 2.288961 ACGAGTTTCACGCGGATAAT 57.711 45.000 12.47 0.00 45.57 1.28
61 62 1.722464 CAACGAGTTTCACGCGGATAA 59.278 47.619 12.47 0.00 45.57 1.75
62 63 1.336148 ACAACGAGTTTCACGCGGATA 60.336 47.619 12.47 0.00 45.57 2.59
63 64 0.599204 ACAACGAGTTTCACGCGGAT 60.599 50.000 12.47 0.00 45.57 4.18
64 65 1.227031 ACAACGAGTTTCACGCGGA 60.227 52.632 12.47 1.33 45.57 5.54
65 66 1.083657 CACAACGAGTTTCACGCGG 60.084 57.895 12.47 0.00 45.57 6.46
66 67 1.083657 CCACAACGAGTTTCACGCG 60.084 57.895 3.53 3.53 46.67 6.01
67 68 1.191647 CTACCACAACGAGTTTCACGC 59.808 52.381 0.00 0.00 0.00 5.34
68 69 1.191647 GCTACCACAACGAGTTTCACG 59.808 52.381 0.00 0.00 0.00 4.35
69 70 2.480845 AGCTACCACAACGAGTTTCAC 58.519 47.619 0.00 0.00 0.00 3.18
70 71 2.869801 CAAGCTACCACAACGAGTTTCA 59.130 45.455 0.00 0.00 0.00 2.69
71 72 2.870411 ACAAGCTACCACAACGAGTTTC 59.130 45.455 0.00 0.00 0.00 2.78
72 73 2.612212 CACAAGCTACCACAACGAGTTT 59.388 45.455 0.00 0.00 0.00 2.66
73 74 2.210116 CACAAGCTACCACAACGAGTT 58.790 47.619 0.00 0.00 0.00 3.01
74 75 1.540363 CCACAAGCTACCACAACGAGT 60.540 52.381 0.00 0.00 0.00 4.18
75 76 1.148310 CCACAAGCTACCACAACGAG 58.852 55.000 0.00 0.00 0.00 4.18
76 77 0.753867 TCCACAAGCTACCACAACGA 59.246 50.000 0.00 0.00 0.00 3.85
77 78 1.148310 CTCCACAAGCTACCACAACG 58.852 55.000 0.00 0.00 0.00 4.10
78 79 2.543777 TCTCCACAAGCTACCACAAC 57.456 50.000 0.00 0.00 0.00 3.32
79 80 2.290260 CCATCTCCACAAGCTACCACAA 60.290 50.000 0.00 0.00 0.00 3.33
80 81 1.278985 CCATCTCCACAAGCTACCACA 59.721 52.381 0.00 0.00 0.00 4.17
81 82 2.014068 GCCATCTCCACAAGCTACCAC 61.014 57.143 0.00 0.00 0.00 4.16
82 83 0.253044 GCCATCTCCACAAGCTACCA 59.747 55.000 0.00 0.00 0.00 3.25
83 84 0.253044 TGCCATCTCCACAAGCTACC 59.747 55.000 0.00 0.00 0.00 3.18
84 85 2.012673 CTTGCCATCTCCACAAGCTAC 58.987 52.381 0.00 0.00 34.90 3.58
85 86 1.630369 ACTTGCCATCTCCACAAGCTA 59.370 47.619 0.00 0.00 43.63 3.32
86 87 0.403271 ACTTGCCATCTCCACAAGCT 59.597 50.000 0.00 0.00 43.63 3.74
87 88 0.524862 CACTTGCCATCTCCACAAGC 59.475 55.000 0.00 0.00 43.63 4.01
88 89 2.189594 TCACTTGCCATCTCCACAAG 57.810 50.000 0.00 0.00 44.98 3.16
89 90 2.439409 CATCACTTGCCATCTCCACAA 58.561 47.619 0.00 0.00 0.00 3.33
90 91 1.340308 CCATCACTTGCCATCTCCACA 60.340 52.381 0.00 0.00 0.00 4.17
91 92 1.340405 ACCATCACTTGCCATCTCCAC 60.340 52.381 0.00 0.00 0.00 4.02
92 93 0.994247 ACCATCACTTGCCATCTCCA 59.006 50.000 0.00 0.00 0.00 3.86
93 94 2.171448 AGTACCATCACTTGCCATCTCC 59.829 50.000 0.00 0.00 0.00 3.71
94 95 3.118629 TCAGTACCATCACTTGCCATCTC 60.119 47.826 0.00 0.00 0.00 2.75
95 96 2.840038 TCAGTACCATCACTTGCCATCT 59.160 45.455 0.00 0.00 0.00 2.90
96 97 2.939103 GTCAGTACCATCACTTGCCATC 59.061 50.000 0.00 0.00 0.00 3.51
97 98 2.305635 TGTCAGTACCATCACTTGCCAT 59.694 45.455 0.00 0.00 0.00 4.40
98 99 1.696884 TGTCAGTACCATCACTTGCCA 59.303 47.619 0.00 0.00 0.00 4.92
99 100 2.076863 GTGTCAGTACCATCACTTGCC 58.923 52.381 0.00 0.00 0.00 4.52
100 101 1.726791 CGTGTCAGTACCATCACTTGC 59.273 52.381 9.20 0.00 0.00 4.01
101 102 2.987149 GACGTGTCAGTACCATCACTTG 59.013 50.000 0.00 0.00 0.00 3.16
102 103 2.891580 AGACGTGTCAGTACCATCACTT 59.108 45.455 0.00 2.02 0.00 3.16
103 104 2.515854 AGACGTGTCAGTACCATCACT 58.484 47.619 0.00 0.00 0.00 3.41
104 105 3.299340 AAGACGTGTCAGTACCATCAC 57.701 47.619 0.00 0.00 0.00 3.06
105 106 4.330944 AAAAGACGTGTCAGTACCATCA 57.669 40.909 0.00 0.00 0.00 3.07
106 107 4.326548 GCTAAAAGACGTGTCAGTACCATC 59.673 45.833 0.00 0.00 0.00 3.51
107 108 4.243270 GCTAAAAGACGTGTCAGTACCAT 58.757 43.478 0.00 0.00 0.00 3.55
108 109 3.068448 TGCTAAAAGACGTGTCAGTACCA 59.932 43.478 0.00 0.00 0.00 3.25
109 110 3.645884 TGCTAAAAGACGTGTCAGTACC 58.354 45.455 0.00 0.00 0.00 3.34
110 111 7.063074 ACAATATGCTAAAAGACGTGTCAGTAC 59.937 37.037 0.00 0.00 0.00 2.73
111 112 7.062956 CACAATATGCTAAAAGACGTGTCAGTA 59.937 37.037 0.00 0.00 0.00 2.74
112 113 5.932303 ACAATATGCTAAAAGACGTGTCAGT 59.068 36.000 0.00 0.00 0.00 3.41
113 114 6.090763 TCACAATATGCTAAAAGACGTGTCAG 59.909 38.462 0.00 0.00 0.00 3.51
114 115 5.929415 TCACAATATGCTAAAAGACGTGTCA 59.071 36.000 0.00 0.00 0.00 3.58
115 116 6.403333 TCACAATATGCTAAAAGACGTGTC 57.597 37.500 0.00 0.00 0.00 3.67
116 117 6.985188 ATCACAATATGCTAAAAGACGTGT 57.015 33.333 0.00 0.00 0.00 4.49
117 118 9.210426 GTTTATCACAATATGCTAAAAGACGTG 57.790 33.333 0.00 0.00 32.21 4.49
118 119 8.114290 CGTTTATCACAATATGCTAAAAGACGT 58.886 33.333 0.00 0.00 33.07 4.34
119 120 8.325282 TCGTTTATCACAATATGCTAAAAGACG 58.675 33.333 0.00 0.00 34.54 4.18
120 121 9.982291 TTCGTTTATCACAATATGCTAAAAGAC 57.018 29.630 0.00 0.00 37.22 3.01
125 126 9.541143 TCATCTTCGTTTATCACAATATGCTAA 57.459 29.630 0.00 0.00 0.00 3.09
126 127 9.710900 ATCATCTTCGTTTATCACAATATGCTA 57.289 29.630 0.00 0.00 0.00 3.49
127 128 8.613060 ATCATCTTCGTTTATCACAATATGCT 57.387 30.769 0.00 0.00 0.00 3.79
128 129 9.322776 GAATCATCTTCGTTTATCACAATATGC 57.677 33.333 0.00 0.00 0.00 3.14
131 132 8.539674 CGTGAATCATCTTCGTTTATCACAATA 58.460 33.333 0.00 0.00 36.59 1.90
132 133 7.401860 CGTGAATCATCTTCGTTTATCACAAT 58.598 34.615 0.00 0.00 36.59 2.71
133 134 6.672118 GCGTGAATCATCTTCGTTTATCACAA 60.672 38.462 0.00 0.00 36.59 3.33
134 135 5.220397 GCGTGAATCATCTTCGTTTATCACA 60.220 40.000 0.00 0.00 36.59 3.58
140 141 4.685169 ATTGCGTGAATCATCTTCGTTT 57.315 36.364 0.00 0.00 0.00 3.60
144 145 9.669353 AATACATTTATTGCGTGAATCATCTTC 57.331 29.630 0.00 0.00 0.00 2.87
150 151 7.167468 GGTGGAAATACATTTATTGCGTGAATC 59.833 37.037 0.00 0.00 0.00 2.52
157 158 8.196771 TCTCATTGGTGGAAATACATTTATTGC 58.803 33.333 0.00 0.00 0.00 3.56
174 175 9.236006 GCCATTAGTTATCATATTCTCATTGGT 57.764 33.333 0.00 0.00 0.00 3.67
175 176 9.234827 TGCCATTAGTTATCATATTCTCATTGG 57.765 33.333 0.00 0.00 0.00 3.16
179 180 8.605065 TGGATGCCATTAGTTATCATATTCTCA 58.395 33.333 0.00 0.00 0.00 3.27
218 220 3.120649 GGTCTCTTTGAACGAATTCACCG 60.121 47.826 6.22 0.00 44.66 4.94
220 222 4.319549 GGTGGTCTCTTTGAACGAATTCAC 60.320 45.833 6.22 0.00 44.66 3.18
227 229 1.226746 GGTGGTGGTCTCTTTGAACG 58.773 55.000 0.00 0.00 34.43 3.95
261 263 1.128692 GTGACGGTCTGCTTACATTGC 59.871 52.381 9.88 0.00 0.00 3.56
262 264 2.668457 GAGTGACGGTCTGCTTACATTG 59.332 50.000 9.88 0.00 0.00 2.82
263 265 2.299013 TGAGTGACGGTCTGCTTACATT 59.701 45.455 9.88 0.00 0.00 2.71
268 270 0.464036 TTGTGAGTGACGGTCTGCTT 59.536 50.000 9.88 0.00 0.00 3.91
270 272 1.461127 GATTTGTGAGTGACGGTCTGC 59.539 52.381 9.88 2.65 0.00 4.26
274 279 1.140052 TGGTGATTTGTGAGTGACGGT 59.860 47.619 0.00 0.00 0.00 4.83
286 291 4.083324 CGCACAGACTTGTTATGGTGATTT 60.083 41.667 0.00 0.00 34.62 2.17
297 302 1.065551 GCCTTTTTCGCACAGACTTGT 59.934 47.619 0.00 0.00 38.31 3.16
308 313 2.667969 GCTTATTTGCTGGCCTTTTTCG 59.332 45.455 3.32 0.00 0.00 3.46
311 316 3.602483 CATGCTTATTTGCTGGCCTTTT 58.398 40.909 3.32 0.00 0.00 2.27
312 317 2.678769 GCATGCTTATTTGCTGGCCTTT 60.679 45.455 11.37 0.00 0.00 3.11
313 318 1.134610 GCATGCTTATTTGCTGGCCTT 60.135 47.619 11.37 0.00 0.00 4.35
321 326 8.242085 TGTAGATTTGTTTGCATGCTTATTTG 57.758 30.769 20.33 0.00 0.00 2.32
333 338 8.378172 TGTCTTAGGTCTTGTAGATTTGTTTG 57.622 34.615 0.00 0.00 0.00 2.93
342 347 9.319143 CAAATCCTTATGTCTTAGGTCTTGTAG 57.681 37.037 0.00 0.00 33.15 2.74
345 350 7.010552 CGACAAATCCTTATGTCTTAGGTCTTG 59.989 40.741 4.62 0.00 42.93 3.02
355 362 4.694339 ACCTAGCGACAAATCCTTATGTC 58.306 43.478 0.00 0.00 41.95 3.06
356 363 4.443034 GGACCTAGCGACAAATCCTTATGT 60.443 45.833 0.00 0.00 0.00 2.29
357 364 4.058817 GGACCTAGCGACAAATCCTTATG 58.941 47.826 0.00 0.00 0.00 1.90
358 365 3.709653 TGGACCTAGCGACAAATCCTTAT 59.290 43.478 0.00 0.00 0.00 1.73
377 390 6.215121 CACTCTTGTTATGTTTGCATTTGGA 58.785 36.000 0.00 0.00 36.58 3.53
380 393 4.990426 GCCACTCTTGTTATGTTTGCATTT 59.010 37.500 0.00 0.00 36.58 2.32
382 395 3.056607 GGCCACTCTTGTTATGTTTGCAT 60.057 43.478 0.00 0.00 39.03 3.96
384 397 2.668279 CGGCCACTCTTGTTATGTTTGC 60.668 50.000 2.24 0.00 0.00 3.68
390 403 1.066143 CACCTCGGCCACTCTTGTTAT 60.066 52.381 2.24 0.00 0.00 1.89
397 410 1.079750 GAGTTCACCTCGGCCACTC 60.080 63.158 2.24 1.95 0.00 3.51
402 415 1.255667 TGTAGGGAGTTCACCTCGGC 61.256 60.000 0.00 0.00 41.46 5.54
405 418 3.385111 CCACTATGTAGGGAGTTCACCTC 59.615 52.174 0.00 0.00 39.54 3.85
407 420 2.158943 GCCACTATGTAGGGAGTTCACC 60.159 54.545 0.00 0.00 0.00 4.02
416 429 2.172505 TGTCCCAATGCCACTATGTAGG 59.827 50.000 0.00 0.00 0.00 3.18
422 435 0.908910 ACGATGTCCCAATGCCACTA 59.091 50.000 0.00 0.00 0.00 2.74
423 436 0.038166 AACGATGTCCCAATGCCACT 59.962 50.000 0.00 0.00 0.00 4.00
425 438 1.626686 AAAACGATGTCCCAATGCCA 58.373 45.000 0.00 0.00 0.00 4.92
427 440 3.057596 TCAGAAAAACGATGTCCCAATGC 60.058 43.478 0.00 0.00 0.00 3.56
428 441 4.216257 AGTCAGAAAAACGATGTCCCAATG 59.784 41.667 0.00 0.00 0.00 2.82
429 442 4.398319 AGTCAGAAAAACGATGTCCCAAT 58.602 39.130 0.00 0.00 0.00 3.16
430 443 3.813166 GAGTCAGAAAAACGATGTCCCAA 59.187 43.478 0.00 0.00 0.00 4.12
431 444 3.399330 GAGTCAGAAAAACGATGTCCCA 58.601 45.455 0.00 0.00 0.00 4.37
432 445 2.742589 GGAGTCAGAAAAACGATGTCCC 59.257 50.000 0.00 0.00 0.00 4.46
433 446 2.742589 GGGAGTCAGAAAAACGATGTCC 59.257 50.000 0.00 0.00 0.00 4.02
434 447 3.665190 AGGGAGTCAGAAAAACGATGTC 58.335 45.455 0.00 0.00 0.00 3.06
441 473 2.631160 TGCGAAGGGAGTCAGAAAAA 57.369 45.000 0.00 0.00 0.00 1.94
446 478 5.584649 TGTTTATAAATGCGAAGGGAGTCAG 59.415 40.000 0.31 0.00 0.00 3.51
478 510 7.655236 TGCAATAAAAAGATGTTGGATGTTG 57.345 32.000 0.00 0.00 0.00 3.33
499 536 7.670009 AATTAATAGCAGCACAATTTTTGCA 57.330 28.000 9.97 0.00 42.83 4.08
500 537 9.853921 GATAATTAATAGCAGCACAATTTTTGC 57.146 29.630 0.00 0.00 40.52 3.68
502 539 9.248291 CCGATAATTAATAGCAGCACAATTTTT 57.752 29.630 0.00 0.00 0.00 1.94
503 540 8.629158 TCCGATAATTAATAGCAGCACAATTTT 58.371 29.630 0.00 0.00 0.00 1.82
505 542 7.744087 TCCGATAATTAATAGCAGCACAATT 57.256 32.000 0.00 0.00 0.00 2.32
506 543 7.094634 CCTTCCGATAATTAATAGCAGCACAAT 60.095 37.037 0.00 0.00 0.00 2.71
507 544 6.204688 CCTTCCGATAATTAATAGCAGCACAA 59.795 38.462 0.00 0.00 0.00 3.33
508 545 5.700832 CCTTCCGATAATTAATAGCAGCACA 59.299 40.000 0.00 0.00 0.00 4.57
509 546 5.932303 TCCTTCCGATAATTAATAGCAGCAC 59.068 40.000 0.00 0.00 0.00 4.40
510 547 6.109156 TCCTTCCGATAATTAATAGCAGCA 57.891 37.500 0.00 0.00 0.00 4.41
511 548 6.128254 GGTTCCTTCCGATAATTAATAGCAGC 60.128 42.308 0.00 0.00 0.00 5.25
512 549 7.162082 AGGTTCCTTCCGATAATTAATAGCAG 58.838 38.462 0.00 0.00 0.00 4.24
529 569 1.149101 TTGAGCAGGGAAGGTTCCTT 58.851 50.000 8.65 3.55 46.72 3.36
556 596 9.030301 GCGTAATTTCTTGCCAACAATATAATT 57.970 29.630 0.00 0.00 34.61 1.40
558 598 6.689241 CGCGTAATTTCTTGCCAACAATATAA 59.311 34.615 0.00 0.00 34.61 0.98
559 599 6.195868 CGCGTAATTTCTTGCCAACAATATA 58.804 36.000 0.00 0.00 34.61 0.86
581 621 2.164827 ACATTTCCGTAAAATTCCCCGC 59.835 45.455 0.00 0.00 35.32 6.13
586 626 5.890424 TCCCTCACATTTCCGTAAAATTC 57.110 39.130 0.00 0.00 35.32 2.17
589 629 5.009210 CACTTTCCCTCACATTTCCGTAAAA 59.991 40.000 0.00 0.00 0.00 1.52
602 642 2.834549 CCTCTTCTAGCACTTTCCCTCA 59.165 50.000 0.00 0.00 0.00 3.86
605 645 3.867857 CTTCCTCTTCTAGCACTTTCCC 58.132 50.000 0.00 0.00 0.00 3.97
850 904 1.099689 GAGGACAGAAGGAGAGGACG 58.900 60.000 0.00 0.00 0.00 4.79
1411 1489 1.201429 GGAAGGGAGGTGAAGCTGGA 61.201 60.000 0.00 0.00 0.00 3.86
1433 1511 6.782494 AGGGTTGTTAATGGGGATGATAATTC 59.218 38.462 0.00 0.00 0.00 2.17
1435 1513 6.293649 AGGGTTGTTAATGGGGATGATAAT 57.706 37.500 0.00 0.00 0.00 1.28
1436 1514 5.742562 AGGGTTGTTAATGGGGATGATAA 57.257 39.130 0.00 0.00 0.00 1.75
1437 1515 5.073965 GGTAGGGTTGTTAATGGGGATGATA 59.926 44.000 0.00 0.00 0.00 2.15
1476 1558 2.785679 GAACCAAGAATTCGCCGATTG 58.214 47.619 0.00 0.00 0.00 2.67
1477 1559 1.396996 CGAACCAAGAATTCGCCGATT 59.603 47.619 0.00 0.00 42.11 3.34
1478 1560 1.006832 CGAACCAAGAATTCGCCGAT 58.993 50.000 0.00 0.00 42.11 4.18
1479 1561 1.017177 CCGAACCAAGAATTCGCCGA 61.017 55.000 0.00 0.00 45.95 5.54
1491 1573 1.406065 TTAACCCACCGACCGAACCA 61.406 55.000 0.00 0.00 0.00 3.67
1512 1594 1.536766 TGCCAAATCAAGAACTCGCAG 59.463 47.619 0.00 0.00 0.00 5.18
1547 1629 1.003233 ACTTGCCGGAGAAGAAGCC 60.003 57.895 17.91 0.00 0.00 4.35
1606 1688 1.374947 GTCCTTGCTGCTGGTGGTA 59.625 57.895 0.00 0.00 0.00 3.25
1932 2023 4.244066 CATCCATCCATCTTGTCGATCTC 58.756 47.826 0.00 0.00 0.00 2.75
2036 2131 6.342111 ACTACCAGCAGCTAGTAAAAGAATC 58.658 40.000 2.14 0.00 0.00 2.52
2133 2228 4.202357 TGAGACAGAACACTGGCATAACTT 60.202 41.667 5.87 0.00 41.71 2.66
2151 2246 2.499289 TCAGGCTTCTCTCCAATGAGAC 59.501 50.000 0.00 0.00 42.73 3.36
2168 2263 7.396540 ACTAGCATTGAAAAGGTTAATCAGG 57.603 36.000 0.00 0.00 0.00 3.86
2198 2296 2.092267 TGATCTGCATGCATACCTTGGT 60.092 45.455 22.97 3.98 0.00 3.67
2229 2327 2.301346 GTCAATGATCAATCGGGGCTT 58.699 47.619 0.00 0.00 0.00 4.35
2388 2496 8.856103 ACAAAATAAGTACAATAGCACCACTTT 58.144 29.630 0.00 0.00 32.09 2.66
2426 2534 4.347360 ACCCCTTTTGCCGATATAGTAC 57.653 45.455 0.00 0.00 0.00 2.73
2474 2584 8.506196 AGTACAAATCAAAGAGGCCCTATATA 57.494 34.615 0.00 0.00 0.00 0.86
2475 2585 7.394144 AGTACAAATCAAAGAGGCCCTATAT 57.606 36.000 0.00 0.00 0.00 0.86
2476 2586 6.183361 GGAGTACAAATCAAAGAGGCCCTATA 60.183 42.308 0.00 0.00 0.00 1.31
2477 2587 5.398012 GGAGTACAAATCAAAGAGGCCCTAT 60.398 44.000 0.00 0.00 0.00 2.57
2501 2611 8.364142 AGAAAGAGATATATTCAGGAACGAAGG 58.636 37.037 0.00 0.00 0.00 3.46
2528 2638 9.733556 TGTATGTAGTCACTTGTTGGAATATTT 57.266 29.630 0.00 0.00 0.00 1.40
2531 2641 8.129496 TCTGTATGTAGTCACTTGTTGGAATA 57.871 34.615 0.00 0.00 0.00 1.75
2533 2643 6.041637 ACTCTGTATGTAGTCACTTGTTGGAA 59.958 38.462 0.00 0.00 0.00 3.53
2534 2644 5.538813 ACTCTGTATGTAGTCACTTGTTGGA 59.461 40.000 0.00 0.00 0.00 3.53
2536 2646 6.447162 TCACTCTGTATGTAGTCACTTGTTG 58.553 40.000 0.00 0.00 0.00 3.33
2537 2647 6.650427 TCACTCTGTATGTAGTCACTTGTT 57.350 37.500 0.00 0.00 0.00 2.83
2538 2648 6.650427 TTCACTCTGTATGTAGTCACTTGT 57.350 37.500 0.00 0.00 0.00 3.16
2539 2649 7.542890 AGATTCACTCTGTATGTAGTCACTTG 58.457 38.462 0.00 0.00 31.12 3.16
2540 2650 7.710676 AGATTCACTCTGTATGTAGTCACTT 57.289 36.000 0.00 0.00 31.12 3.16
2541 2651 7.829706 TGTAGATTCACTCTGTATGTAGTCACT 59.170 37.037 0.00 0.00 35.28 3.41
2542 2652 7.911205 GTGTAGATTCACTCTGTATGTAGTCAC 59.089 40.741 0.00 0.00 35.28 3.67
2543 2653 7.829706 AGTGTAGATTCACTCTGTATGTAGTCA 59.170 37.037 0.00 0.00 44.07 3.41
2544 2654 8.215926 AGTGTAGATTCACTCTGTATGTAGTC 57.784 38.462 0.00 0.00 44.07 2.59
2580 2690 7.408756 AGTACAACATAGGGACGTATGTAAA 57.591 36.000 15.48 4.72 41.80 2.01
2582 2692 5.532406 GGAGTACAACATAGGGACGTATGTA 59.468 44.000 15.48 1.38 41.80 2.29
2583 2693 4.340381 GGAGTACAACATAGGGACGTATGT 59.660 45.833 10.82 10.82 44.02 2.29
2584 2694 4.340097 TGGAGTACAACATAGGGACGTATG 59.660 45.833 9.70 9.70 36.60 2.39
2585 2695 4.539726 TGGAGTACAACATAGGGACGTAT 58.460 43.478 0.00 0.00 0.00 3.06
2587 2697 2.811410 TGGAGTACAACATAGGGACGT 58.189 47.619 0.00 0.00 0.00 4.34
2588 2698 4.402056 AATGGAGTACAACATAGGGACG 57.598 45.455 0.00 0.00 0.00 4.79
2589 2699 5.741011 TCAAATGGAGTACAACATAGGGAC 58.259 41.667 0.00 0.00 0.00 4.46
2590 2700 6.381498 TTCAAATGGAGTACAACATAGGGA 57.619 37.500 0.00 0.00 0.00 4.20
2591 2701 7.122650 ACATTTCAAATGGAGTACAACATAGGG 59.877 37.037 14.70 0.00 0.00 3.53
2592 2702 8.055279 ACATTTCAAATGGAGTACAACATAGG 57.945 34.615 14.70 0.00 0.00 2.57
2593 2703 9.912634 AAACATTTCAAATGGAGTACAACATAG 57.087 29.630 14.70 0.00 0.00 2.23
2631 2741 8.657712 GGAGTACAAACATAGGGACCTAAATAT 58.342 37.037 1.59 0.00 31.73 1.28
2632 2742 7.624478 TGGAGTACAAACATAGGGACCTAAATA 59.376 37.037 1.59 0.00 31.73 1.40
2633 2743 6.445786 TGGAGTACAAACATAGGGACCTAAAT 59.554 38.462 1.59 0.00 31.73 1.40
2635 2745 5.343715 TGGAGTACAAACATAGGGACCTAA 58.656 41.667 1.59 0.00 31.73 2.69
2636 2746 4.950361 TGGAGTACAAACATAGGGACCTA 58.050 43.478 0.00 0.00 0.00 3.08
2637 2747 3.798515 TGGAGTACAAACATAGGGACCT 58.201 45.455 0.00 0.00 0.00 3.85
2638 2748 4.772886 ATGGAGTACAAACATAGGGACC 57.227 45.455 0.00 0.00 0.00 4.46
2640 2750 6.381498 TCAAATGGAGTACAAACATAGGGA 57.619 37.500 0.00 0.00 0.00 4.20
2641 2751 7.461182 TTTCAAATGGAGTACAAACATAGGG 57.539 36.000 0.00 0.00 0.00 3.53
2642 2752 8.522830 ACATTTCAAATGGAGTACAAACATAGG 58.477 33.333 14.70 0.00 0.00 2.57
2697 2807 6.539826 CCGTCCGGTCCTAAATATAAGTTTTT 59.460 38.462 0.00 0.00 0.00 1.94
2698 2808 6.051074 CCGTCCGGTCCTAAATATAAGTTTT 58.949 40.000 0.00 0.00 0.00 2.43
2701 2811 4.473444 TCCGTCCGGTCCTAAATATAAGT 58.527 43.478 0.00 0.00 36.47 2.24
2702 2812 4.522022 ACTCCGTCCGGTCCTAAATATAAG 59.478 45.833 0.00 0.00 36.47 1.73
2703 2813 4.473444 ACTCCGTCCGGTCCTAAATATAA 58.527 43.478 0.00 0.00 36.47 0.98
2704 2814 4.104383 ACTCCGTCCGGTCCTAAATATA 57.896 45.455 0.00 0.00 36.47 0.86
2705 2815 2.954792 ACTCCGTCCGGTCCTAAATAT 58.045 47.619 0.00 0.00 36.47 1.28
2710 2820 0.982852 TCCTACTCCGTCCGGTCCTA 60.983 60.000 0.00 0.00 36.47 2.94
2711 2821 1.643475 ATCCTACTCCGTCCGGTCCT 61.643 60.000 0.00 0.00 36.47 3.85
2712 2822 0.754587 AATCCTACTCCGTCCGGTCC 60.755 60.000 0.00 0.00 36.47 4.46
2713 2823 1.109609 AAATCCTACTCCGTCCGGTC 58.890 55.000 0.00 0.00 36.47 4.79
2714 2824 2.442236 TAAATCCTACTCCGTCCGGT 57.558 50.000 0.00 0.00 36.47 5.28
2715 2825 3.131755 AGTTTAAATCCTACTCCGTCCGG 59.868 47.826 0.00 0.00 0.00 5.14
2716 2826 4.382345 AGTTTAAATCCTACTCCGTCCG 57.618 45.455 0.00 0.00 0.00 4.79
2717 2827 7.945134 TGTATAGTTTAAATCCTACTCCGTCC 58.055 38.462 0.00 0.00 0.00 4.79
2718 2828 9.408069 CATGTATAGTTTAAATCCTACTCCGTC 57.592 37.037 0.00 0.00 0.00 4.79
2719 2829 9.139734 TCATGTATAGTTTAAATCCTACTCCGT 57.860 33.333 0.00 0.00 0.00 4.69
2720 2830 9.976511 TTCATGTATAGTTTAAATCCTACTCCG 57.023 33.333 0.00 0.00 0.00 4.63
2800 3000 9.871238 AAGAGCGTTTAGAACTAATGATCTAAA 57.129 29.630 12.12 4.36 41.80 1.85
2801 3001 9.302345 CAAGAGCGTTTAGAACTAATGATCTAA 57.698 33.333 12.12 0.00 36.30 2.10
2802 3002 8.467598 ACAAGAGCGTTTAGAACTAATGATCTA 58.532 33.333 12.12 0.00 31.15 1.98
2803 3003 7.324178 ACAAGAGCGTTTAGAACTAATGATCT 58.676 34.615 0.00 8.32 32.02 2.75
2804 3004 7.527084 ACAAGAGCGTTTAGAACTAATGATC 57.473 36.000 0.00 0.00 0.00 2.92
2805 3005 9.601217 AATACAAGAGCGTTTAGAACTAATGAT 57.399 29.630 0.00 0.00 0.00 2.45
2806 3006 8.997621 AATACAAGAGCGTTTAGAACTAATGA 57.002 30.769 0.00 0.00 0.00 2.57
2808 3008 9.530633 CCTAATACAAGAGCGTTTAGAACTAAT 57.469 33.333 0.00 0.00 0.00 1.73
2809 3009 8.526147 ACCTAATACAAGAGCGTTTAGAACTAA 58.474 33.333 0.00 0.00 0.00 2.24
2810 3010 8.059798 ACCTAATACAAGAGCGTTTAGAACTA 57.940 34.615 0.00 0.00 0.00 2.24
2811 3011 6.932947 ACCTAATACAAGAGCGTTTAGAACT 58.067 36.000 0.00 0.00 0.00 3.01
2812 3012 7.592439 AACCTAATACAAGAGCGTTTAGAAC 57.408 36.000 0.00 0.00 0.00 3.01
2813 3013 8.306038 TGTAACCTAATACAAGAGCGTTTAGAA 58.694 33.333 0.00 0.00 33.02 2.10
2814 3014 7.829725 TGTAACCTAATACAAGAGCGTTTAGA 58.170 34.615 0.00 0.00 33.02 2.10
2815 3015 7.972277 TCTGTAACCTAATACAAGAGCGTTTAG 59.028 37.037 0.00 0.00 35.48 1.85
2816 3016 7.829725 TCTGTAACCTAATACAAGAGCGTTTA 58.170 34.615 0.00 0.00 35.48 2.01
2817 3017 6.694447 TCTGTAACCTAATACAAGAGCGTTT 58.306 36.000 0.00 0.00 35.48 3.60
2818 3018 6.276832 TCTGTAACCTAATACAAGAGCGTT 57.723 37.500 0.00 0.00 35.48 4.84
2819 3019 5.163540 CCTCTGTAACCTAATACAAGAGCGT 60.164 44.000 0.00 0.00 35.48 5.07
2820 3020 5.067413 TCCTCTGTAACCTAATACAAGAGCG 59.933 44.000 0.00 0.00 35.48 5.03
2821 3021 6.466885 TCCTCTGTAACCTAATACAAGAGC 57.533 41.667 0.00 0.00 35.48 4.09
2822 3022 8.068892 ACTTCCTCTGTAACCTAATACAAGAG 57.931 38.462 0.00 0.00 35.48 2.85
2823 3023 9.186837 CTACTTCCTCTGTAACCTAATACAAGA 57.813 37.037 0.00 0.00 35.48 3.02
2824 3024 8.414778 CCTACTTCCTCTGTAACCTAATACAAG 58.585 40.741 0.00 0.00 35.48 3.16
2825 3025 8.117956 TCCTACTTCCTCTGTAACCTAATACAA 58.882 37.037 0.00 0.00 35.48 2.41
2826 3026 7.559170 GTCCTACTTCCTCTGTAACCTAATACA 59.441 40.741 0.00 0.00 34.72 2.29
2827 3027 7.779326 AGTCCTACTTCCTCTGTAACCTAATAC 59.221 40.741 0.00 0.00 0.00 1.89
2828 3028 7.778853 CAGTCCTACTTCCTCTGTAACCTAATA 59.221 40.741 0.00 0.00 0.00 0.98
2829 3029 6.608002 CAGTCCTACTTCCTCTGTAACCTAAT 59.392 42.308 0.00 0.00 0.00 1.73
2830 3030 5.950549 CAGTCCTACTTCCTCTGTAACCTAA 59.049 44.000 0.00 0.00 0.00 2.69
2831 3031 5.252397 TCAGTCCTACTTCCTCTGTAACCTA 59.748 44.000 0.00 0.00 0.00 3.08
2832 3032 4.044317 TCAGTCCTACTTCCTCTGTAACCT 59.956 45.833 0.00 0.00 0.00 3.50
2833 3033 4.342359 TCAGTCCTACTTCCTCTGTAACC 58.658 47.826 0.00 0.00 0.00 2.85
2834 3034 5.979288 TTCAGTCCTACTTCCTCTGTAAC 57.021 43.478 0.00 0.00 0.00 2.50
2835 3035 8.840200 ATATTTCAGTCCTACTTCCTCTGTAA 57.160 34.615 0.00 0.00 0.00 2.41
2836 3036 8.059461 TGATATTTCAGTCCTACTTCCTCTGTA 58.941 37.037 0.00 0.00 0.00 2.74
2837 3037 6.897966 TGATATTTCAGTCCTACTTCCTCTGT 59.102 38.462 0.00 0.00 0.00 3.41
2838 3038 7.353414 TGATATTTCAGTCCTACTTCCTCTG 57.647 40.000 0.00 0.00 0.00 3.35
2839 3039 7.418483 GCTTGATATTTCAGTCCTACTTCCTCT 60.418 40.741 0.00 0.00 32.27 3.69
2840 3040 6.704050 GCTTGATATTTCAGTCCTACTTCCTC 59.296 42.308 0.00 0.00 32.27 3.71
2841 3041 6.408662 GGCTTGATATTTCAGTCCTACTTCCT 60.409 42.308 0.00 0.00 32.27 3.36
2842 3042 5.760743 GGCTTGATATTTCAGTCCTACTTCC 59.239 44.000 0.00 0.00 32.27 3.46
2843 3043 5.760743 GGGCTTGATATTTCAGTCCTACTTC 59.239 44.000 6.00 0.00 32.27 3.01
2844 3044 5.191722 TGGGCTTGATATTTCAGTCCTACTT 59.808 40.000 7.41 0.00 32.27 2.24
2845 3045 4.721776 TGGGCTTGATATTTCAGTCCTACT 59.278 41.667 7.41 0.00 32.27 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.