Multiple sequence alignment - TraesCS7D01G416600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G416600 chr7D 100.000 2723 0 0 1 2723 535564889 535562167 0.000000e+00 5029
1 TraesCS7D01G416600 chr7B 92.464 1181 72 11 973 2145 577302223 577301052 0.000000e+00 1672
2 TraesCS7D01G416600 chr7B 92.494 413 21 4 570 974 577302692 577302282 1.410000e-162 582
3 TraesCS7D01G416600 chr7B 86.765 340 41 4 2386 2723 577285914 577285577 2.560000e-100 375
4 TraesCS7D01G416600 chr7B 92.708 192 13 1 2195 2386 577286137 577285947 2.670000e-70 276
5 TraesCS7D01G416600 chr7B 92.708 192 13 1 2195 2386 577289066 577288876 2.670000e-70 276
6 TraesCS7D01G416600 chr7B 92.188 192 14 1 2195 2386 577291993 577291803 1.240000e-68 270
7 TraesCS7D01G416600 chr7B 97.015 67 2 0 183 249 124360992 124360926 2.220000e-21 113
8 TraesCS7D01G416600 chr7A 87.816 1305 91 28 984 2267 618116961 618118218 0.000000e+00 1467
9 TraesCS7D01G416600 chr7A 88.620 413 19 9 579 974 618116509 618116910 6.820000e-131 477
10 TraesCS7D01G416600 chr7A 93.431 137 8 1 22 157 338624960 338625096 4.600000e-48 202
11 TraesCS7D01G416600 chr4D 89.456 607 62 2 1118 1724 354036798 354037402 0.000000e+00 765
12 TraesCS7D01G416600 chr2B 89.570 604 62 1 1117 1719 111669305 111668702 0.000000e+00 765
13 TraesCS7D01G416600 chr2D 89.667 600 61 1 1121 1719 73819993 73819394 0.000000e+00 763
14 TraesCS7D01G416600 chr2D 88.907 613 66 2 1112 1724 323516952 323516342 0.000000e+00 754
15 TraesCS7D01G416600 chr2D 88.852 601 67 0 1129 1729 323561486 323562086 0.000000e+00 739
16 TraesCS7D01G416600 chr2D 93.952 248 13 2 1 247 71964842 71964596 9.210000e-100 374
17 TraesCS7D01G416600 chr2D 91.200 250 13 2 1 249 161526489 161526248 5.620000e-87 331
18 TraesCS7D01G416600 chr4A 89.643 589 61 0 1125 1713 110910198 110909610 0.000000e+00 750
19 TraesCS7D01G416600 chr2A 89.262 596 64 0 1129 1724 73183276 73182681 0.000000e+00 747
20 TraesCS7D01G416600 chr1D 93.600 250 15 1 1 249 486072144 486071895 3.310000e-99 372
21 TraesCS7D01G416600 chr6B 93.697 238 14 1 1 238 65081259 65081495 3.330000e-94 355
22 TraesCS7D01G416600 chr6B 93.750 80 5 0 170 249 65081496 65081575 1.320000e-23 121
23 TraesCS7D01G416600 chr6B 88.889 90 7 3 161 249 547694697 547694784 1.030000e-19 108
24 TraesCS7D01G416600 chr6B 95.522 67 2 1 183 249 705759945 705760010 3.710000e-19 106
25 TraesCS7D01G416600 chr3A 91.633 251 19 2 1 250 80154019 80154268 2.010000e-91 346
26 TraesCS7D01G416600 chr3B 85.380 171 16 3 27 188 243307731 243307901 4.660000e-38 169
27 TraesCS7D01G416600 chr5B 89.888 89 7 2 161 248 664477404 664477491 2.220000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G416600 chr7D 535562167 535564889 2722 True 5029.00 5029 100.00000 1 2723 1 chr7D.!!$R1 2722
1 TraesCS7D01G416600 chr7B 577301052 577302692 1640 True 1127.00 1672 92.47900 570 2145 2 chr7B.!!$R3 1575
2 TraesCS7D01G416600 chr7B 577285577 577291993 6416 True 299.25 375 91.09225 2195 2723 4 chr7B.!!$R2 528
3 TraesCS7D01G416600 chr7A 618116509 618118218 1709 False 972.00 1467 88.21800 579 2267 2 chr7A.!!$F2 1688
4 TraesCS7D01G416600 chr4D 354036798 354037402 604 False 765.00 765 89.45600 1118 1724 1 chr4D.!!$F1 606
5 TraesCS7D01G416600 chr2B 111668702 111669305 603 True 765.00 765 89.57000 1117 1719 1 chr2B.!!$R1 602
6 TraesCS7D01G416600 chr2D 73819394 73819993 599 True 763.00 763 89.66700 1121 1719 1 chr2D.!!$R2 598
7 TraesCS7D01G416600 chr2D 323516342 323516952 610 True 754.00 754 88.90700 1112 1724 1 chr2D.!!$R4 612
8 TraesCS7D01G416600 chr2D 323561486 323562086 600 False 739.00 739 88.85200 1129 1729 1 chr2D.!!$F1 600
9 TraesCS7D01G416600 chr4A 110909610 110910198 588 True 750.00 750 89.64300 1125 1713 1 chr4A.!!$R1 588
10 TraesCS7D01G416600 chr2A 73182681 73183276 595 True 747.00 747 89.26200 1129 1724 1 chr2A.!!$R1 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
182 183 0.025001 CAAACGGCTGATAAGACGCG 59.975 55.0 4.79 3.53 45.65 6.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2088 2213 0.534412 CTCCCTCATCGTGCTTGAGT 59.466 55.0 0.0 0.0 39.16 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.735132 CTTTGAGGCCGGCGTCGA 62.735 66.667 35.95 33.39 39.00 4.20
34 35 4.735132 TTTGAGGCCGGCGTCGAG 62.735 66.667 35.95 1.34 39.00 4.04
44 45 2.951745 GCGTCGAGCTCGTCCATG 60.952 66.667 33.33 21.22 44.04 3.66
45 46 2.278206 CGTCGAGCTCGTCCATGG 60.278 66.667 33.33 13.04 40.80 3.66
46 47 2.583593 GTCGAGCTCGTCCATGGC 60.584 66.667 33.33 13.33 40.80 4.40
47 48 4.193334 TCGAGCTCGTCCATGGCG 62.193 66.667 33.33 18.73 40.80 5.69
49 50 4.899239 GAGCTCGTCCATGGCGGG 62.899 72.222 22.59 21.36 34.36 6.13
78 79 4.459089 GTCAGCGGGGGCTCAGTC 62.459 72.222 0.00 0.00 0.00 3.51
96 97 3.793888 GTCGGGCGGGGGATTCTT 61.794 66.667 0.00 0.00 0.00 2.52
97 98 3.012722 TCGGGCGGGGGATTCTTT 61.013 61.111 0.00 0.00 0.00 2.52
98 99 2.516225 CGGGCGGGGGATTCTTTC 60.516 66.667 0.00 0.00 0.00 2.62
99 100 2.516225 GGGCGGGGGATTCTTTCG 60.516 66.667 0.00 0.00 0.00 3.46
100 101 3.209812 GGCGGGGGATTCTTTCGC 61.210 66.667 0.00 0.00 44.80 4.70
101 102 3.573491 GCGGGGGATTCTTTCGCG 61.573 66.667 0.00 0.00 38.15 5.87
102 103 2.125269 CGGGGGATTCTTTCGCGT 60.125 61.111 5.77 0.00 38.15 6.01
103 104 2.171725 CGGGGGATTCTTTCGCGTC 61.172 63.158 5.77 0.00 38.15 5.19
104 105 1.221021 GGGGGATTCTTTCGCGTCT 59.779 57.895 5.77 0.00 38.15 4.18
105 106 1.090052 GGGGGATTCTTTCGCGTCTG 61.090 60.000 5.77 0.00 38.15 3.51
106 107 1.090052 GGGGATTCTTTCGCGTCTGG 61.090 60.000 5.77 0.00 38.15 3.86
107 108 1.706287 GGGATTCTTTCGCGTCTGGC 61.706 60.000 5.77 0.00 38.69 4.85
108 109 1.019278 GGATTCTTTCGCGTCTGGCA 61.019 55.000 5.77 0.00 43.84 4.92
109 110 1.009829 GATTCTTTCGCGTCTGGCAT 58.990 50.000 5.77 0.00 43.84 4.40
110 111 0.729116 ATTCTTTCGCGTCTGGCATG 59.271 50.000 5.77 0.00 43.84 4.06
111 112 1.911293 TTCTTTCGCGTCTGGCATGC 61.911 55.000 9.90 9.90 43.84 4.06
132 133 4.899239 GGCGCGAGGTGGGAGATG 62.899 72.222 12.10 0.00 0.00 2.90
135 136 4.899239 GCGAGGTGGGAGATGCGG 62.899 72.222 0.00 0.00 0.00 5.69
136 137 4.227134 CGAGGTGGGAGATGCGGG 62.227 72.222 0.00 0.00 0.00 6.13
137 138 3.866582 GAGGTGGGAGATGCGGGG 61.867 72.222 0.00 0.00 0.00 5.73
138 139 4.414956 AGGTGGGAGATGCGGGGA 62.415 66.667 0.00 0.00 0.00 4.81
139 140 3.866582 GGTGGGAGATGCGGGGAG 61.867 72.222 0.00 0.00 0.00 4.30
140 141 3.866582 GTGGGAGATGCGGGGAGG 61.867 72.222 0.00 0.00 0.00 4.30
141 142 4.088351 TGGGAGATGCGGGGAGGA 62.088 66.667 0.00 0.00 0.00 3.71
142 143 3.551407 GGGAGATGCGGGGAGGAC 61.551 72.222 0.00 0.00 0.00 3.85
143 144 2.764128 GGAGATGCGGGGAGGACA 60.764 66.667 0.00 0.00 0.00 4.02
144 145 2.367202 GGAGATGCGGGGAGGACAA 61.367 63.158 0.00 0.00 0.00 3.18
145 146 1.602237 GAGATGCGGGGAGGACAAA 59.398 57.895 0.00 0.00 0.00 2.83
146 147 0.462759 GAGATGCGGGGAGGACAAAG 60.463 60.000 0.00 0.00 0.00 2.77
147 148 0.909610 AGATGCGGGGAGGACAAAGA 60.910 55.000 0.00 0.00 0.00 2.52
148 149 0.035439 GATGCGGGGAGGACAAAGAA 60.035 55.000 0.00 0.00 0.00 2.52
149 150 0.404040 ATGCGGGGAGGACAAAGAAA 59.596 50.000 0.00 0.00 0.00 2.52
150 151 0.183971 TGCGGGGAGGACAAAGAAAA 59.816 50.000 0.00 0.00 0.00 2.29
151 152 1.324383 GCGGGGAGGACAAAGAAAAA 58.676 50.000 0.00 0.00 0.00 1.94
168 169 3.813529 AAAAAGGAGCTCGATCAAACG 57.186 42.857 7.83 0.00 0.00 3.60
169 170 1.726853 AAAGGAGCTCGATCAAACGG 58.273 50.000 7.83 0.00 0.00 4.44
170 171 0.741221 AAGGAGCTCGATCAAACGGC 60.741 55.000 7.83 0.00 0.00 5.68
171 172 1.153549 GGAGCTCGATCAAACGGCT 60.154 57.895 7.83 0.00 40.36 5.52
172 173 1.424493 GGAGCTCGATCAAACGGCTG 61.424 60.000 7.83 0.00 38.85 4.85
173 174 0.458543 GAGCTCGATCAAACGGCTGA 60.459 55.000 0.00 0.00 38.85 4.26
174 175 0.176680 AGCTCGATCAAACGGCTGAT 59.823 50.000 0.00 1.49 38.79 2.90
175 176 1.409064 AGCTCGATCAAACGGCTGATA 59.591 47.619 0.00 0.00 36.15 2.15
176 177 2.159099 AGCTCGATCAAACGGCTGATAA 60.159 45.455 0.00 0.00 36.15 1.75
177 178 2.219674 GCTCGATCAAACGGCTGATAAG 59.780 50.000 0.00 4.66 36.15 1.73
178 179 3.706698 CTCGATCAAACGGCTGATAAGA 58.293 45.455 0.00 4.66 36.15 2.10
179 180 3.444916 TCGATCAAACGGCTGATAAGAC 58.555 45.455 0.00 0.00 36.15 3.01
181 182 1.355971 TCAAACGGCTGATAAGACGC 58.644 50.000 4.79 0.00 45.65 5.19
182 183 0.025001 CAAACGGCTGATAAGACGCG 59.975 55.000 4.79 3.53 45.65 6.01
183 184 1.693083 AAACGGCTGATAAGACGCGC 61.693 55.000 4.79 0.00 45.65 6.86
184 185 2.582226 CGGCTGATAAGACGCGCA 60.582 61.111 5.73 0.00 31.79 6.09
185 186 1.951130 CGGCTGATAAGACGCGCAT 60.951 57.895 5.73 0.00 31.79 4.73
186 187 1.856012 GGCTGATAAGACGCGCATC 59.144 57.895 5.73 0.00 0.00 3.91
187 188 0.598680 GGCTGATAAGACGCGCATCT 60.599 55.000 5.73 3.21 0.00 2.90
188 189 0.506080 GCTGATAAGACGCGCATCTG 59.494 55.000 6.81 6.96 0.00 2.90
189 190 1.865655 GCTGATAAGACGCGCATCTGA 60.866 52.381 6.81 0.00 0.00 3.27
190 191 1.783711 CTGATAAGACGCGCATCTGAC 59.216 52.381 6.81 2.18 0.00 3.51
191 192 0.772926 GATAAGACGCGCATCTGACG 59.227 55.000 6.81 0.00 0.00 4.35
192 193 0.595053 ATAAGACGCGCATCTGACGG 60.595 55.000 6.81 0.00 0.00 4.79
199 200 4.864334 GCATCTGACGGCTGGGGG 62.864 72.222 0.00 0.00 0.00 5.40
200 201 3.402681 CATCTGACGGCTGGGGGT 61.403 66.667 0.00 0.00 0.00 4.95
201 202 3.083997 ATCTGACGGCTGGGGGTC 61.084 66.667 0.00 0.00 0.00 4.46
250 251 2.107141 CGCCTAGCACTGCCCTAC 59.893 66.667 0.00 0.00 0.00 3.18
251 252 2.506472 GCCTAGCACTGCCCTACC 59.494 66.667 0.00 0.00 0.00 3.18
252 253 2.367202 GCCTAGCACTGCCCTACCA 61.367 63.158 0.00 0.00 0.00 3.25
253 254 1.700042 GCCTAGCACTGCCCTACCAT 61.700 60.000 0.00 0.00 0.00 3.55
254 255 0.839946 CCTAGCACTGCCCTACCATT 59.160 55.000 0.00 0.00 0.00 3.16
255 256 1.212935 CCTAGCACTGCCCTACCATTT 59.787 52.381 0.00 0.00 0.00 2.32
256 257 2.438021 CCTAGCACTGCCCTACCATTTA 59.562 50.000 0.00 0.00 0.00 1.40
257 258 3.073062 CCTAGCACTGCCCTACCATTTAT 59.927 47.826 0.00 0.00 0.00 1.40
258 259 2.936202 AGCACTGCCCTACCATTTATG 58.064 47.619 0.00 0.00 0.00 1.90
259 260 2.509548 AGCACTGCCCTACCATTTATGA 59.490 45.455 0.00 0.00 0.00 2.15
260 261 3.139025 AGCACTGCCCTACCATTTATGAT 59.861 43.478 0.00 0.00 0.00 2.45
261 262 4.350816 AGCACTGCCCTACCATTTATGATA 59.649 41.667 0.00 0.00 0.00 2.15
262 263 5.014544 AGCACTGCCCTACCATTTATGATAT 59.985 40.000 0.00 0.00 0.00 1.63
263 264 5.711976 GCACTGCCCTACCATTTATGATATT 59.288 40.000 0.00 0.00 0.00 1.28
264 265 6.209391 GCACTGCCCTACCATTTATGATATTT 59.791 38.462 0.00 0.00 0.00 1.40
265 266 7.596494 CACTGCCCTACCATTTATGATATTTG 58.404 38.462 0.00 0.00 0.00 2.32
266 267 7.231317 CACTGCCCTACCATTTATGATATTTGT 59.769 37.037 0.00 0.00 0.00 2.83
267 268 7.784550 ACTGCCCTACCATTTATGATATTTGTT 59.215 33.333 0.00 0.00 0.00 2.83
268 269 7.950512 TGCCCTACCATTTATGATATTTGTTG 58.049 34.615 0.00 0.00 0.00 3.33
269 270 7.563188 TGCCCTACCATTTATGATATTTGTTGT 59.437 33.333 0.00 0.00 0.00 3.32
270 271 9.073475 GCCCTACCATTTATGATATTTGTTGTA 57.927 33.333 0.00 0.00 0.00 2.41
343 344 3.743636 TGCACTCGCATCGTCCGA 61.744 61.111 0.00 0.00 45.36 4.55
348 349 3.889044 TCGCATCGTCCGAGAGCC 61.889 66.667 10.12 0.00 0.00 4.70
349 350 4.193334 CGCATCGTCCGAGAGCCA 62.193 66.667 10.12 0.00 0.00 4.75
350 351 2.184322 GCATCGTCCGAGAGCCAA 59.816 61.111 5.83 0.00 0.00 4.52
351 352 1.447838 GCATCGTCCGAGAGCCAAA 60.448 57.895 5.83 0.00 0.00 3.28
352 353 1.019278 GCATCGTCCGAGAGCCAAAA 61.019 55.000 5.83 0.00 0.00 2.44
353 354 1.656652 CATCGTCCGAGAGCCAAAAT 58.343 50.000 0.00 0.00 0.00 1.82
354 355 1.594862 CATCGTCCGAGAGCCAAAATC 59.405 52.381 0.00 0.00 0.00 2.17
355 356 0.895530 TCGTCCGAGAGCCAAAATCT 59.104 50.000 0.00 0.00 0.00 2.40
356 357 1.002366 CGTCCGAGAGCCAAAATCTG 58.998 55.000 0.00 0.00 0.00 2.90
357 358 0.729690 GTCCGAGAGCCAAAATCTGC 59.270 55.000 0.00 0.00 0.00 4.26
358 359 0.615331 TCCGAGAGCCAAAATCTGCT 59.385 50.000 0.00 0.00 41.42 4.24
359 360 1.003580 TCCGAGAGCCAAAATCTGCTT 59.996 47.619 0.00 0.00 38.11 3.91
360 361 1.399791 CCGAGAGCCAAAATCTGCTTC 59.600 52.381 0.00 0.00 38.11 3.86
361 362 1.399791 CGAGAGCCAAAATCTGCTTCC 59.600 52.381 0.00 0.00 38.11 3.46
362 363 2.720915 GAGAGCCAAAATCTGCTTCCT 58.279 47.619 0.00 0.00 38.11 3.36
363 364 3.087781 GAGAGCCAAAATCTGCTTCCTT 58.912 45.455 0.00 0.00 38.11 3.36
364 365 3.504375 AGAGCCAAAATCTGCTTCCTTT 58.496 40.909 0.00 0.00 38.11 3.11
365 366 3.257624 AGAGCCAAAATCTGCTTCCTTTG 59.742 43.478 0.00 0.00 38.11 2.77
366 367 2.301009 AGCCAAAATCTGCTTCCTTTGG 59.699 45.455 13.36 13.36 46.98 3.28
369 370 4.589216 CAAAATCTGCTTCCTTTGGACA 57.411 40.909 0.00 0.00 0.00 4.02
370 371 4.301628 CAAAATCTGCTTCCTTTGGACAC 58.698 43.478 0.00 0.00 0.00 3.67
371 372 2.957402 ATCTGCTTCCTTTGGACACA 57.043 45.000 0.00 0.00 0.00 3.72
372 373 1.967319 TCTGCTTCCTTTGGACACAC 58.033 50.000 0.00 0.00 0.00 3.82
373 374 0.954452 CTGCTTCCTTTGGACACACC 59.046 55.000 0.00 0.00 39.54 4.16
374 375 0.817634 TGCTTCCTTTGGACACACCG 60.818 55.000 0.00 0.00 42.61 4.94
375 376 1.949257 CTTCCTTTGGACACACCGC 59.051 57.895 0.00 0.00 42.61 5.68
376 377 0.535102 CTTCCTTTGGACACACCGCT 60.535 55.000 0.00 0.00 42.61 5.52
377 378 0.759959 TTCCTTTGGACACACCGCTA 59.240 50.000 0.00 0.00 42.61 4.26
378 379 0.981183 TCCTTTGGACACACCGCTAT 59.019 50.000 0.00 0.00 42.61 2.97
379 380 1.349688 TCCTTTGGACACACCGCTATT 59.650 47.619 0.00 0.00 42.61 1.73
380 381 2.568062 TCCTTTGGACACACCGCTATTA 59.432 45.455 0.00 0.00 42.61 0.98
381 382 2.936498 CCTTTGGACACACCGCTATTAG 59.064 50.000 0.00 0.00 42.61 1.73
382 383 3.596214 CTTTGGACACACCGCTATTAGT 58.404 45.455 0.00 0.00 42.61 2.24
383 384 3.688694 TTGGACACACCGCTATTAGTT 57.311 42.857 0.00 0.00 42.61 2.24
384 385 3.688694 TGGACACACCGCTATTAGTTT 57.311 42.857 0.00 0.00 42.61 2.66
385 386 3.331150 TGGACACACCGCTATTAGTTTG 58.669 45.455 0.00 0.00 42.61 2.93
386 387 3.244284 TGGACACACCGCTATTAGTTTGT 60.244 43.478 0.00 0.00 42.61 2.83
387 388 3.749609 GGACACACCGCTATTAGTTTGTT 59.250 43.478 0.00 0.00 27.48 2.83
388 389 4.142966 GGACACACCGCTATTAGTTTGTTC 60.143 45.833 0.00 0.00 27.48 3.18
389 390 4.638304 ACACACCGCTATTAGTTTGTTCT 58.362 39.130 0.00 0.00 0.00 3.01
390 391 4.451096 ACACACCGCTATTAGTTTGTTCTG 59.549 41.667 0.00 0.00 0.00 3.02
391 392 3.435671 ACACCGCTATTAGTTTGTTCTGC 59.564 43.478 0.00 0.00 0.00 4.26
392 393 2.671396 ACCGCTATTAGTTTGTTCTGCG 59.329 45.455 0.00 0.00 41.50 5.18
393 394 3.304382 CGCTATTAGTTTGTTCTGCGG 57.696 47.619 0.00 0.00 38.74 5.69
394 395 2.671396 CGCTATTAGTTTGTTCTGCGGT 59.329 45.455 0.00 0.00 38.74 5.68
395 396 3.861113 CGCTATTAGTTTGTTCTGCGGTA 59.139 43.478 0.00 0.00 38.74 4.02
396 397 4.026804 CGCTATTAGTTTGTTCTGCGGTAG 60.027 45.833 0.00 0.00 38.74 3.18
397 398 4.868734 GCTATTAGTTTGTTCTGCGGTAGT 59.131 41.667 0.00 0.00 0.00 2.73
398 399 5.005490 GCTATTAGTTTGTTCTGCGGTAGTC 59.995 44.000 0.00 0.00 0.00 2.59
399 400 4.595762 TTAGTTTGTTCTGCGGTAGTCT 57.404 40.909 0.00 0.00 0.00 3.24
400 401 3.470645 AGTTTGTTCTGCGGTAGTCTT 57.529 42.857 0.00 0.00 0.00 3.01
401 402 4.595762 AGTTTGTTCTGCGGTAGTCTTA 57.404 40.909 0.00 0.00 0.00 2.10
402 403 4.557205 AGTTTGTTCTGCGGTAGTCTTAG 58.443 43.478 0.00 0.00 0.00 2.18
403 404 3.587797 TTGTTCTGCGGTAGTCTTAGG 57.412 47.619 0.00 0.00 0.00 2.69
404 405 2.522185 TGTTCTGCGGTAGTCTTAGGT 58.478 47.619 0.00 0.00 0.00 3.08
405 406 3.689347 TGTTCTGCGGTAGTCTTAGGTA 58.311 45.455 0.00 0.00 0.00 3.08
406 407 4.275810 TGTTCTGCGGTAGTCTTAGGTAT 58.724 43.478 0.00 0.00 0.00 2.73
407 408 4.708421 TGTTCTGCGGTAGTCTTAGGTATT 59.292 41.667 0.00 0.00 0.00 1.89
408 409 5.163581 TGTTCTGCGGTAGTCTTAGGTATTC 60.164 44.000 0.00 0.00 0.00 1.75
409 410 4.789807 TCTGCGGTAGTCTTAGGTATTCT 58.210 43.478 0.00 0.00 0.00 2.40
410 411 5.198965 TCTGCGGTAGTCTTAGGTATTCTT 58.801 41.667 0.00 0.00 0.00 2.52
411 412 5.655532 TCTGCGGTAGTCTTAGGTATTCTTT 59.344 40.000 0.00 0.00 0.00 2.52
412 413 6.154021 TCTGCGGTAGTCTTAGGTATTCTTTT 59.846 38.462 0.00 0.00 0.00 2.27
413 414 6.704310 TGCGGTAGTCTTAGGTATTCTTTTT 58.296 36.000 0.00 0.00 0.00 1.94
443 444 9.589111 GAAACTTAGTCTTAGGTATTCTCTTGG 57.411 37.037 0.00 0.00 0.00 3.61
444 445 8.667592 AACTTAGTCTTAGGTATTCTCTTGGT 57.332 34.615 0.00 0.00 0.00 3.67
445 446 8.296211 ACTTAGTCTTAGGTATTCTCTTGGTC 57.704 38.462 0.00 0.00 0.00 4.02
446 447 7.894364 ACTTAGTCTTAGGTATTCTCTTGGTCA 59.106 37.037 0.00 0.00 0.00 4.02
447 448 6.532988 AGTCTTAGGTATTCTCTTGGTCAC 57.467 41.667 0.00 0.00 0.00 3.67
448 449 5.125739 AGTCTTAGGTATTCTCTTGGTCACG 59.874 44.000 0.00 0.00 0.00 4.35
449 450 5.014858 TCTTAGGTATTCTCTTGGTCACGT 58.985 41.667 0.00 0.00 0.00 4.49
450 451 3.870633 AGGTATTCTCTTGGTCACGTC 57.129 47.619 0.00 0.00 0.00 4.34
451 452 3.162666 AGGTATTCTCTTGGTCACGTCA 58.837 45.455 0.00 0.00 0.00 4.35
452 453 3.193691 AGGTATTCTCTTGGTCACGTCAG 59.806 47.826 0.00 0.00 0.00 3.51
453 454 2.086054 ATTCTCTTGGTCACGTCAGC 57.914 50.000 0.00 0.00 0.00 4.26
454 455 1.040646 TTCTCTTGGTCACGTCAGCT 58.959 50.000 0.00 0.00 0.00 4.24
455 456 0.315251 TCTCTTGGTCACGTCAGCTG 59.685 55.000 7.63 7.63 0.00 4.24
456 457 0.668706 CTCTTGGTCACGTCAGCTGG 60.669 60.000 15.13 0.36 0.00 4.85
457 458 1.069765 CTTGGTCACGTCAGCTGGT 59.930 57.895 15.13 1.12 0.00 4.00
458 459 0.532862 CTTGGTCACGTCAGCTGGTT 60.533 55.000 15.13 0.00 0.00 3.67
459 460 0.753867 TTGGTCACGTCAGCTGGTTA 59.246 50.000 15.13 0.00 0.00 2.85
460 461 0.317160 TGGTCACGTCAGCTGGTTAG 59.683 55.000 15.13 5.53 0.00 2.34
461 462 0.389948 GGTCACGTCAGCTGGTTAGG 60.390 60.000 15.13 2.79 0.00 2.69
462 463 0.389948 GTCACGTCAGCTGGTTAGGG 60.390 60.000 15.13 4.24 0.00 3.53
463 464 0.541063 TCACGTCAGCTGGTTAGGGA 60.541 55.000 15.13 6.68 0.00 4.20
464 465 0.108615 CACGTCAGCTGGTTAGGGAG 60.109 60.000 15.13 0.00 0.00 4.30
465 466 1.153549 CGTCAGCTGGTTAGGGAGC 60.154 63.158 15.13 0.00 35.28 4.70
466 467 1.888436 CGTCAGCTGGTTAGGGAGCA 61.888 60.000 15.13 0.00 37.70 4.26
470 471 2.187946 CTGGTTAGGGAGCAGCGG 59.812 66.667 0.00 0.00 45.85 5.52
471 472 4.096003 TGGTTAGGGAGCAGCGGC 62.096 66.667 0.00 0.00 41.61 6.53
472 473 4.858680 GGTTAGGGAGCAGCGGCC 62.859 72.222 4.82 0.00 42.56 6.13
473 474 4.096003 GTTAGGGAGCAGCGGCCA 62.096 66.667 4.82 0.00 42.56 5.36
474 475 4.096003 TTAGGGAGCAGCGGCCAC 62.096 66.667 4.82 0.00 42.56 5.01
497 498 2.846193 GCGGAAAGCTATGGGTAATCA 58.154 47.619 0.00 0.00 44.04 2.57
498 499 2.548480 GCGGAAAGCTATGGGTAATCAC 59.452 50.000 0.00 0.00 44.04 3.06
499 500 2.800544 CGGAAAGCTATGGGTAATCACG 59.199 50.000 0.00 0.00 0.00 4.35
500 501 3.740141 CGGAAAGCTATGGGTAATCACGT 60.740 47.826 0.00 0.00 0.00 4.49
501 502 4.500205 CGGAAAGCTATGGGTAATCACGTA 60.500 45.833 0.00 0.00 0.00 3.57
502 503 4.748600 GGAAAGCTATGGGTAATCACGTAC 59.251 45.833 0.00 0.00 0.00 3.67
503 504 5.347620 AAAGCTATGGGTAATCACGTACA 57.652 39.130 0.00 0.00 0.00 2.90
504 505 4.585955 AGCTATGGGTAATCACGTACAG 57.414 45.455 0.00 0.00 0.00 2.74
505 506 3.958798 AGCTATGGGTAATCACGTACAGT 59.041 43.478 0.00 0.00 0.00 3.55
506 507 5.135383 AGCTATGGGTAATCACGTACAGTA 58.865 41.667 0.00 0.00 0.00 2.74
507 508 5.773680 AGCTATGGGTAATCACGTACAGTAT 59.226 40.000 0.00 0.00 0.00 2.12
508 509 5.862323 GCTATGGGTAATCACGTACAGTATG 59.138 44.000 0.00 0.00 46.00 2.39
509 510 6.294342 GCTATGGGTAATCACGTACAGTATGA 60.294 42.308 6.81 0.00 39.69 2.15
510 511 5.509716 TGGGTAATCACGTACAGTATGAG 57.490 43.478 6.81 0.00 39.69 2.90
511 512 4.951715 TGGGTAATCACGTACAGTATGAGT 59.048 41.667 6.81 0.00 39.69 3.41
512 513 5.066893 TGGGTAATCACGTACAGTATGAGTC 59.933 44.000 6.81 0.00 39.69 3.36
513 514 5.066893 GGGTAATCACGTACAGTATGAGTCA 59.933 44.000 6.81 0.00 39.69 3.41
514 515 6.405065 GGGTAATCACGTACAGTATGAGTCAA 60.405 42.308 6.81 0.00 39.69 3.18
515 516 7.201145 GGTAATCACGTACAGTATGAGTCAAT 58.799 38.462 6.81 0.00 39.69 2.57
516 517 7.167635 GGTAATCACGTACAGTATGAGTCAATG 59.832 40.741 6.81 0.00 39.69 2.82
517 518 5.890424 TCACGTACAGTATGAGTCAATGA 57.110 39.130 6.81 0.00 39.69 2.57
518 519 6.262193 TCACGTACAGTATGAGTCAATGAA 57.738 37.500 6.81 0.00 39.69 2.57
519 520 6.090783 TCACGTACAGTATGAGTCAATGAAC 58.909 40.000 6.81 0.00 39.69 3.18
520 521 5.288712 CACGTACAGTATGAGTCAATGAACC 59.711 44.000 6.81 0.00 39.69 3.62
521 522 5.047590 ACGTACAGTATGAGTCAATGAACCA 60.048 40.000 6.81 0.00 39.69 3.67
522 523 6.042777 CGTACAGTATGAGTCAATGAACCAT 58.957 40.000 0.00 4.50 39.69 3.55
523 524 7.147966 ACGTACAGTATGAGTCAATGAACCATA 60.148 37.037 6.81 2.92 39.69 2.74
524 525 7.867909 CGTACAGTATGAGTCAATGAACCATAT 59.132 37.037 0.00 0.00 39.69 1.78
529 530 9.645059 AGTATGAGTCAATGAACCATATATTCG 57.355 33.333 0.00 0.00 0.00 3.34
530 531 9.424319 GTATGAGTCAATGAACCATATATTCGT 57.576 33.333 0.00 0.00 0.00 3.85
531 532 7.713764 TGAGTCAATGAACCATATATTCGTG 57.286 36.000 0.00 0.00 0.00 4.35
532 533 6.705825 TGAGTCAATGAACCATATATTCGTGG 59.294 38.462 0.00 0.00 41.35 4.94
537 538 1.508632 ACCATATATTCGTGGTGCGC 58.491 50.000 0.00 0.00 46.55 6.09
538 539 0.438445 CCATATATTCGTGGTGCGCG 59.562 55.000 0.00 0.00 41.07 6.86
539 540 0.438445 CATATATTCGTGGTGCGCGG 59.562 55.000 8.83 0.00 41.07 6.46
540 541 0.315886 ATATATTCGTGGTGCGCGGA 59.684 50.000 8.83 0.00 41.07 5.54
541 542 0.102663 TATATTCGTGGTGCGCGGAA 59.897 50.000 8.83 1.29 41.07 4.30
542 543 1.151777 ATATTCGTGGTGCGCGGAAG 61.152 55.000 8.83 0.00 41.07 3.46
555 556 1.416049 CGGAAGCGTCATGTTGTCG 59.584 57.895 1.14 0.00 32.37 4.35
556 557 1.006825 CGGAAGCGTCATGTTGTCGA 61.007 55.000 1.14 0.00 30.84 4.20
557 558 1.359848 GGAAGCGTCATGTTGTCGAT 58.640 50.000 1.14 0.00 30.84 3.59
558 559 2.536365 GGAAGCGTCATGTTGTCGATA 58.464 47.619 1.14 0.00 30.84 2.92
559 560 2.281762 GGAAGCGTCATGTTGTCGATAC 59.718 50.000 1.14 0.00 30.84 2.24
560 561 2.941453 AGCGTCATGTTGTCGATACT 57.059 45.000 0.00 0.00 30.84 2.12
561 562 4.348656 GAAGCGTCATGTTGTCGATACTA 58.651 43.478 0.00 0.00 30.84 1.82
562 563 4.569761 AGCGTCATGTTGTCGATACTAT 57.430 40.909 0.00 0.00 30.84 2.12
563 564 4.290969 AGCGTCATGTTGTCGATACTATG 58.709 43.478 0.00 0.00 30.84 2.23
564 565 3.121328 GCGTCATGTTGTCGATACTATGC 60.121 47.826 0.00 0.00 30.84 3.14
565 566 3.425525 CGTCATGTTGTCGATACTATGCC 59.574 47.826 0.00 0.00 30.84 4.40
566 567 4.368315 GTCATGTTGTCGATACTATGCCA 58.632 43.478 0.00 0.00 0.00 4.92
567 568 4.991056 GTCATGTTGTCGATACTATGCCAT 59.009 41.667 0.00 0.00 0.00 4.40
568 569 5.466728 GTCATGTTGTCGATACTATGCCATT 59.533 40.000 0.00 0.00 0.00 3.16
572 573 6.342111 TGTTGTCGATACTATGCCATTGTAA 58.658 36.000 3.18 0.00 0.00 2.41
631 632 6.632834 CGTACAACAAAGTTTCATTCAGAAGG 59.367 38.462 0.00 0.00 37.57 3.46
709 715 0.961019 CAACCTAGGCTGCTTTGCAA 59.039 50.000 9.30 0.00 38.41 4.08
720 726 1.080974 CTTTGCAAAGCAGCTCCCG 60.081 57.895 25.26 0.51 40.61 5.14
753 762 2.032680 ACCCCGTTATTGTGGATTCG 57.967 50.000 0.00 0.00 0.00 3.34
896 914 7.702772 CCAGTTTAGTGTATAGAACTACTGCTG 59.297 40.741 10.42 10.18 34.80 4.41
920 938 3.681897 CACTCCACTGAATCAGTTAGCAC 59.318 47.826 13.99 0.00 42.59 4.40
923 941 3.324846 TCCACTGAATCAGTTAGCACACT 59.675 43.478 13.99 0.00 42.59 3.55
957 975 3.753294 ATAAATACCGGTGCCTCTCAG 57.247 47.619 19.93 0.00 0.00 3.35
974 992 5.279910 CCTCTCAGTCTTCTTCCTTCACAAT 60.280 44.000 0.00 0.00 0.00 2.71
976 994 5.305386 TCTCAGTCTTCTTCCTTCACAATCA 59.695 40.000 0.00 0.00 0.00 2.57
977 995 6.013898 TCTCAGTCTTCTTCCTTCACAATCAT 60.014 38.462 0.00 0.00 0.00 2.45
978 996 7.179160 TCTCAGTCTTCTTCCTTCACAATCATA 59.821 37.037 0.00 0.00 0.00 2.15
979 997 7.326454 TCAGTCTTCTTCCTTCACAATCATAG 58.674 38.462 0.00 0.00 0.00 2.23
980 998 6.538021 CAGTCTTCTTCCTTCACAATCATAGG 59.462 42.308 0.00 0.00 0.00 2.57
981 999 6.441924 AGTCTTCTTCCTTCACAATCATAGGA 59.558 38.462 0.00 0.00 35.06 2.94
983 1001 6.669591 TCTTCTTCCTTCACAATCATAGGAGA 59.330 38.462 0.00 0.00 38.02 3.71
985 1003 4.679373 TCCTTCACAATCATAGGAGAGC 57.321 45.455 0.00 0.00 33.08 4.09
986 1004 4.033009 TCCTTCACAATCATAGGAGAGCA 58.967 43.478 0.00 0.00 33.08 4.26
987 1005 4.100653 TCCTTCACAATCATAGGAGAGCAG 59.899 45.833 0.00 0.00 33.08 4.24
1035 1114 8.244494 AGATATACATCGTGTAATCAATGCAC 57.756 34.615 0.00 0.00 40.83 4.57
1040 1119 0.808125 GTGTAATCAATGCACGCCCA 59.192 50.000 0.00 0.00 34.88 5.36
1046 1125 3.064324 AATGCACGCCCAGCCTTC 61.064 61.111 0.00 0.00 0.00 3.46
1060 1139 0.322187 GCCTTCGCTCACCCCTTTTA 60.322 55.000 0.00 0.00 0.00 1.52
1106 1185 2.123854 ATCTGACCGGCCGCTCTA 60.124 61.111 22.85 9.13 0.00 2.43
1107 1186 1.528292 GATCTGACCGGCCGCTCTAT 61.528 60.000 22.85 13.79 0.00 1.98
1736 1816 4.062293 TCCGTGTGAAATCTGGTTTACTG 58.938 43.478 0.00 0.00 0.00 2.74
1769 1849 0.029834 GCTATGCACCGCAAAGATGG 59.970 55.000 4.31 0.00 43.62 3.51
1774 1854 0.955428 GCACCGCAAAGATGGACTCA 60.955 55.000 0.00 0.00 0.00 3.41
1805 1885 2.489938 TGTGGAGCAGGATTTACACC 57.510 50.000 0.00 0.00 0.00 4.16
1824 1904 2.081462 CCATTCTGTAACACGTTCCCC 58.919 52.381 0.00 0.00 0.00 4.81
1837 1917 1.202891 CGTTCCCCTTCCTTTCCACTT 60.203 52.381 0.00 0.00 0.00 3.16
1903 2025 6.981762 ATCAGCTCTGACTTTGACTTATTG 57.018 37.500 1.15 0.00 43.11 1.90
1913 2035 6.372659 TGACTTTGACTTATTGATTCAGGCTC 59.627 38.462 0.00 0.00 0.00 4.70
2023 2148 3.495434 TTACATCCCCAAAAGACACGT 57.505 42.857 0.00 0.00 0.00 4.49
2027 2152 0.035739 TCCCCAAAAGACACGTAGCC 59.964 55.000 0.00 0.00 0.00 3.93
2052 2177 1.118965 TCTGACGCAAAGGAGGGACA 61.119 55.000 0.00 0.00 0.00 4.02
2088 2213 2.811431 CCTCCGTGACAAAGTATGCAAA 59.189 45.455 0.00 0.00 0.00 3.68
2097 2222 4.610945 ACAAAGTATGCAAACTCAAGCAC 58.389 39.130 0.00 0.00 44.49 4.40
2124 2249 5.721480 TGAGGGAGAAGTCAATGAAGATACA 59.279 40.000 0.00 0.00 0.00 2.29
2127 2252 6.157645 AGGGAGAAGTCAATGAAGATACACAT 59.842 38.462 0.00 0.00 0.00 3.21
2148 2273 6.964934 CACATCACAACACATATCTGATTGTG 59.035 38.462 20.99 20.99 46.76 3.33
2165 2290 4.695217 TTGTGTCACTCTTTCCAAACAC 57.305 40.909 4.27 0.00 37.96 3.32
2170 2295 3.013921 TCACTCTTTCCAAACACACCAC 58.986 45.455 0.00 0.00 0.00 4.16
2173 2298 4.023291 ACTCTTTCCAAACACACCACAAT 58.977 39.130 0.00 0.00 0.00 2.71
2175 2300 5.299279 ACTCTTTCCAAACACACCACAATAG 59.701 40.000 0.00 0.00 0.00 1.73
2181 2306 4.943705 CCAAACACACCACAATAGATAGCT 59.056 41.667 0.00 0.00 0.00 3.32
2182 2307 5.415701 CCAAACACACCACAATAGATAGCTT 59.584 40.000 0.00 0.00 0.00 3.74
2183 2308 6.403636 CCAAACACACCACAATAGATAGCTTC 60.404 42.308 0.00 0.00 0.00 3.86
2184 2309 5.420725 ACACACCACAATAGATAGCTTCA 57.579 39.130 0.00 0.00 0.00 3.02
2185 2310 5.178797 ACACACCACAATAGATAGCTTCAC 58.821 41.667 0.00 0.00 0.00 3.18
2186 2311 5.046304 ACACACCACAATAGATAGCTTCACT 60.046 40.000 0.00 0.00 0.00 3.41
2187 2312 5.521735 CACACCACAATAGATAGCTTCACTC 59.478 44.000 0.00 0.00 0.00 3.51
2190 2315 6.820656 CACCACAATAGATAGCTTCACTCTTT 59.179 38.462 0.00 0.00 0.00 2.52
2191 2316 7.010923 CACCACAATAGATAGCTTCACTCTTTC 59.989 40.741 0.00 0.00 0.00 2.62
2193 2318 6.199908 CACAATAGATAGCTTCACTCTTTCCG 59.800 42.308 0.00 0.00 0.00 4.30
2273 8261 0.776810 TCCACAATTCCTCAAGGGCA 59.223 50.000 0.00 0.00 35.41 5.36
2281 8269 1.434188 TCCTCAAGGGCAGTGAAGAA 58.566 50.000 0.00 0.00 35.41 2.52
2289 8277 3.445008 AGGGCAGTGAAGAAGAGTATCA 58.555 45.455 0.00 0.00 37.82 2.15
2290 8278 4.036518 AGGGCAGTGAAGAAGAGTATCAT 58.963 43.478 0.00 0.00 37.82 2.45
2296 8284 6.590068 CAGTGAAGAAGAGTATCATCCCATT 58.410 40.000 0.00 0.00 37.82 3.16
2309 8297 7.885399 AGTATCATCCCATTGGTTATAGAAAGC 59.115 37.037 1.20 0.00 0.00 3.51
2316 8304 4.503714 TTGGTTATAGAAAGCCAGGAGG 57.496 45.455 0.00 0.00 38.23 4.30
2336 8324 0.538746 AAACGAATGTCCCACACCCC 60.539 55.000 0.00 0.00 0.00 4.95
2356 8344 2.289002 CCACGAGAGAATAGGCATTTGC 59.711 50.000 0.00 0.00 41.14 3.68
2360 8348 1.672881 AGAGAATAGGCATTTGCGTGC 59.327 47.619 7.94 0.38 44.31 5.34
2364 8352 2.332063 ATAGGCATTTGCGTGCTAGT 57.668 45.000 7.94 0.00 44.45 2.57
2380 8368 5.464168 GTGCTAGTTGCTCATTTGTTTCAT 58.536 37.500 0.00 0.00 43.37 2.57
2381 8369 5.344128 GTGCTAGTTGCTCATTTGTTTCATG 59.656 40.000 0.00 0.00 43.37 3.07
2384 8372 2.738314 GTTGCTCATTTGTTTCATGCCC 59.262 45.455 0.00 0.00 0.00 5.36
2391 8411 1.786937 TTGTTTCATGCCCACAACCT 58.213 45.000 0.00 0.00 0.00 3.50
2392 8412 1.786937 TGTTTCATGCCCACAACCTT 58.213 45.000 0.00 0.00 0.00 3.50
2418 8438 1.721664 CCAGACGATCCGCGGTAAGA 61.722 60.000 27.15 5.72 46.49 2.10
2424 8444 0.672342 GATCCGCGGTAAGAGCCTTA 59.328 55.000 27.15 0.67 0.00 2.69
2448 8468 7.961326 ACTATGAAGGAAAAGCCACATAAAT 57.039 32.000 0.00 0.00 37.56 1.40
2450 8470 9.125026 ACTATGAAGGAAAAGCCACATAAATAG 57.875 33.333 0.00 0.00 37.56 1.73
2457 8477 7.561356 AGGAAAAGCCACATAAATAGCTTACAT 59.439 33.333 0.00 0.00 44.48 2.29
2460 8480 6.076981 AGCCACATAAATAGCTTACATTGC 57.923 37.500 0.00 0.00 29.27 3.56
2461 8481 5.593909 AGCCACATAAATAGCTTACATTGCA 59.406 36.000 0.00 0.00 29.27 4.08
2462 8482 5.916883 GCCACATAAATAGCTTACATTGCAG 59.083 40.000 0.00 0.00 0.00 4.41
2473 8493 1.079405 CATTGCAGCTTGGCCTTGG 60.079 57.895 3.32 0.00 0.00 3.61
2527 8547 1.544686 GCGCCGGTTAATTGTGATTG 58.455 50.000 1.90 0.00 0.00 2.67
2536 8556 4.381566 GGTTAATTGTGATTGTGTGCGAAC 59.618 41.667 0.00 0.00 0.00 3.95
2537 8557 3.706802 AATTGTGATTGTGTGCGAACA 57.293 38.095 0.00 0.00 0.00 3.18
2540 8560 1.267782 TGTGATTGTGTGCGAACAACG 60.268 47.619 0.00 0.00 42.56 4.10
2543 8563 0.042535 ATTGTGTGCGAACAACGTCG 60.043 50.000 0.00 0.00 42.56 5.12
2548 8568 1.122849 GTGCGAACAACGTCGAGTAA 58.877 50.000 0.00 0.00 43.86 2.24
2551 8571 2.034675 TGCGAACAACGTCGAGTAAAAC 60.035 45.455 0.00 0.00 43.86 2.43
2555 8575 3.441496 ACAACGTCGAGTAAAACCTCA 57.559 42.857 0.00 0.00 0.00 3.86
2592 8612 5.350504 CAGACAATGGAATCCTCTACTGT 57.649 43.478 0.00 0.00 0.00 3.55
2612 8632 2.814336 GTGGGGTCAAAGTGAACATCTC 59.186 50.000 0.00 0.00 35.30 2.75
2620 8640 5.463724 GTCAAAGTGAACATCTCGAAGAAGT 59.536 40.000 0.00 0.00 34.09 3.01
2623 8643 7.169308 TCAAAGTGAACATCTCGAAGAAGTAAC 59.831 37.037 0.00 0.00 34.09 2.50
2628 8648 6.934645 TGAACATCTCGAAGAAGTAACCAAAT 59.065 34.615 0.00 0.00 34.09 2.32
2654 8674 7.173735 TGAATATACTCGAGGATTTACTGCGTA 59.826 37.037 17.06 0.00 0.00 4.42
2658 8678 4.025015 TCGAGGATTTACTGCGTAGAAC 57.975 45.455 7.78 0.00 0.00 3.01
2667 8687 1.341531 ACTGCGTAGAACTGACTGCTT 59.658 47.619 7.78 0.00 0.00 3.91
2671 8691 3.254903 TGCGTAGAACTGACTGCTTAGAA 59.745 43.478 0.00 0.00 0.00 2.10
2677 8697 5.326069 AGAACTGACTGCTTAGAAGGACTA 58.674 41.667 0.00 0.00 0.00 2.59
2696 8716 2.613026 ACATCCAACGATTATGGCGA 57.387 45.000 0.00 0.00 37.88 5.54
2712 8732 2.605094 CGAAGCCCATACATCACGG 58.395 57.895 0.00 0.00 0.00 4.94
2716 8736 3.326747 GAAGCCCATACATCACGGTATC 58.673 50.000 0.00 0.00 31.75 2.24
2719 8739 1.616865 CCCATACATCACGGTATCGGT 59.383 52.381 0.00 0.00 41.39 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.793144 CAAAGCTCGCCGCCACTC 61.793 66.667 0.00 0.00 40.39 3.51
4 5 4.314440 TCAAAGCTCGCCGCCACT 62.314 61.111 0.00 0.00 40.39 4.00
5 6 3.793144 CTCAAAGCTCGCCGCCAC 61.793 66.667 0.00 0.00 40.39 5.01
16 17 4.735132 TCGACGCCGGCCTCAAAG 62.735 66.667 23.46 8.22 36.24 2.77
17 18 4.735132 CTCGACGCCGGCCTCAAA 62.735 66.667 23.46 8.99 36.24 2.69
26 27 4.194720 ATGGACGAGCTCGACGCC 62.195 66.667 40.58 32.99 43.02 5.68
27 28 2.951745 CATGGACGAGCTCGACGC 60.952 66.667 40.58 26.76 43.02 5.19
28 29 2.278206 CCATGGACGAGCTCGACG 60.278 66.667 40.58 21.52 43.02 5.12
29 30 2.583593 GCCATGGACGAGCTCGAC 60.584 66.667 40.58 33.42 43.02 4.20
30 31 4.193334 CGCCATGGACGAGCTCGA 62.193 66.667 40.58 20.72 43.02 4.04
32 33 4.899239 CCCGCCATGGACGAGCTC 62.899 72.222 24.22 2.73 42.00 4.09
79 80 3.339738 AAAGAATCCCCCGCCCGAC 62.340 63.158 0.00 0.00 0.00 4.79
80 81 3.012722 AAAGAATCCCCCGCCCGA 61.013 61.111 0.00 0.00 0.00 5.14
81 82 2.516225 GAAAGAATCCCCCGCCCG 60.516 66.667 0.00 0.00 0.00 6.13
82 83 2.516225 CGAAAGAATCCCCCGCCC 60.516 66.667 0.00 0.00 0.00 6.13
83 84 3.209812 GCGAAAGAATCCCCCGCC 61.210 66.667 0.00 0.00 39.97 6.13
84 85 3.573491 CGCGAAAGAATCCCCCGC 61.573 66.667 0.00 0.00 42.11 6.13
85 86 2.125269 ACGCGAAAGAATCCCCCG 60.125 61.111 15.93 0.00 0.00 5.73
86 87 1.090052 CAGACGCGAAAGAATCCCCC 61.090 60.000 15.93 0.00 0.00 5.40
87 88 1.090052 CCAGACGCGAAAGAATCCCC 61.090 60.000 15.93 0.00 0.00 4.81
88 89 1.706287 GCCAGACGCGAAAGAATCCC 61.706 60.000 15.93 0.00 0.00 3.85
89 90 1.019278 TGCCAGACGCGAAAGAATCC 61.019 55.000 15.93 0.00 42.08 3.01
90 91 1.009829 ATGCCAGACGCGAAAGAATC 58.990 50.000 15.93 0.00 42.08 2.52
91 92 0.729116 CATGCCAGACGCGAAAGAAT 59.271 50.000 15.93 0.00 42.08 2.40
92 93 1.911293 GCATGCCAGACGCGAAAGAA 61.911 55.000 15.93 0.00 42.08 2.52
93 94 2.390599 GCATGCCAGACGCGAAAGA 61.391 57.895 15.93 0.00 42.08 2.52
94 95 2.099062 GCATGCCAGACGCGAAAG 59.901 61.111 15.93 0.46 42.08 2.62
115 116 4.899239 CATCTCCCACCTCGCGCC 62.899 72.222 0.00 0.00 0.00 6.53
118 119 4.899239 CCGCATCTCCCACCTCGC 62.899 72.222 0.00 0.00 0.00 5.03
119 120 4.227134 CCCGCATCTCCCACCTCG 62.227 72.222 0.00 0.00 0.00 4.63
120 121 3.866582 CCCCGCATCTCCCACCTC 61.867 72.222 0.00 0.00 0.00 3.85
121 122 4.414956 TCCCCGCATCTCCCACCT 62.415 66.667 0.00 0.00 0.00 4.00
122 123 3.866582 CTCCCCGCATCTCCCACC 61.867 72.222 0.00 0.00 0.00 4.61
123 124 3.866582 CCTCCCCGCATCTCCCAC 61.867 72.222 0.00 0.00 0.00 4.61
124 125 4.088351 TCCTCCCCGCATCTCCCA 62.088 66.667 0.00 0.00 0.00 4.37
125 126 3.551407 GTCCTCCCCGCATCTCCC 61.551 72.222 0.00 0.00 0.00 4.30
126 127 1.910580 TTTGTCCTCCCCGCATCTCC 61.911 60.000 0.00 0.00 0.00 3.71
127 128 0.462759 CTTTGTCCTCCCCGCATCTC 60.463 60.000 0.00 0.00 0.00 2.75
128 129 0.909610 TCTTTGTCCTCCCCGCATCT 60.910 55.000 0.00 0.00 0.00 2.90
129 130 0.035439 TTCTTTGTCCTCCCCGCATC 60.035 55.000 0.00 0.00 0.00 3.91
130 131 0.404040 TTTCTTTGTCCTCCCCGCAT 59.596 50.000 0.00 0.00 0.00 4.73
131 132 0.183971 TTTTCTTTGTCCTCCCCGCA 59.816 50.000 0.00 0.00 0.00 5.69
132 133 1.324383 TTTTTCTTTGTCCTCCCCGC 58.676 50.000 0.00 0.00 0.00 6.13
148 149 2.484264 CCGTTTGATCGAGCTCCTTTTT 59.516 45.455 8.47 0.00 0.00 1.94
149 150 2.076863 CCGTTTGATCGAGCTCCTTTT 58.923 47.619 8.47 0.00 0.00 2.27
150 151 1.726853 CCGTTTGATCGAGCTCCTTT 58.273 50.000 8.47 0.00 0.00 3.11
151 152 0.741221 GCCGTTTGATCGAGCTCCTT 60.741 55.000 8.47 0.00 0.00 3.36
152 153 1.153549 GCCGTTTGATCGAGCTCCT 60.154 57.895 8.47 0.00 0.00 3.69
153 154 1.153549 AGCCGTTTGATCGAGCTCC 60.154 57.895 8.47 0.00 34.31 4.70
154 155 0.458543 TCAGCCGTTTGATCGAGCTC 60.459 55.000 2.73 2.73 36.08 4.09
155 156 0.176680 ATCAGCCGTTTGATCGAGCT 59.823 50.000 0.90 0.00 37.64 4.09
156 157 1.852942 TATCAGCCGTTTGATCGAGC 58.147 50.000 0.00 0.00 38.65 5.03
157 158 3.487574 GTCTTATCAGCCGTTTGATCGAG 59.512 47.826 2.55 3.78 38.65 4.04
158 159 3.444916 GTCTTATCAGCCGTTTGATCGA 58.555 45.455 2.55 0.00 38.65 3.59
159 160 2.216488 CGTCTTATCAGCCGTTTGATCG 59.784 50.000 2.55 0.00 38.65 3.69
160 161 2.033662 GCGTCTTATCAGCCGTTTGATC 60.034 50.000 2.55 0.00 38.65 2.92
161 162 1.933853 GCGTCTTATCAGCCGTTTGAT 59.066 47.619 4.58 4.58 40.70 2.57
162 163 1.355971 GCGTCTTATCAGCCGTTTGA 58.644 50.000 0.00 0.00 0.00 2.69
163 164 0.025001 CGCGTCTTATCAGCCGTTTG 59.975 55.000 0.00 0.00 0.00 2.93
164 165 1.693083 GCGCGTCTTATCAGCCGTTT 61.693 55.000 8.43 0.00 0.00 3.60
165 166 2.165301 GCGCGTCTTATCAGCCGTT 61.165 57.895 8.43 0.00 0.00 4.44
166 167 2.582498 GCGCGTCTTATCAGCCGT 60.582 61.111 8.43 0.00 0.00 5.68
167 168 1.880601 GATGCGCGTCTTATCAGCCG 61.881 60.000 22.31 0.00 0.00 5.52
168 169 0.598680 AGATGCGCGTCTTATCAGCC 60.599 55.000 26.28 0.00 0.00 4.85
169 170 0.506080 CAGATGCGCGTCTTATCAGC 59.494 55.000 29.13 0.47 0.00 4.26
170 171 1.783711 GTCAGATGCGCGTCTTATCAG 59.216 52.381 29.13 17.39 0.00 2.90
171 172 1.840181 GTCAGATGCGCGTCTTATCA 58.160 50.000 29.13 10.94 0.00 2.15
172 173 0.772926 CGTCAGATGCGCGTCTTATC 59.227 55.000 29.13 19.31 0.00 1.75
173 174 0.595053 CCGTCAGATGCGCGTCTTAT 60.595 55.000 29.13 6.72 0.00 1.73
174 175 1.226575 CCGTCAGATGCGCGTCTTA 60.227 57.895 29.13 19.36 0.00 2.10
175 176 2.507102 CCGTCAGATGCGCGTCTT 60.507 61.111 29.13 12.23 0.00 3.01
182 183 4.864334 CCCCCAGCCGTCAGATGC 62.864 72.222 0.00 0.00 0.00 3.91
183 184 3.391665 GACCCCCAGCCGTCAGATG 62.392 68.421 0.00 0.00 0.00 2.90
184 185 3.083997 GACCCCCAGCCGTCAGAT 61.084 66.667 0.00 0.00 0.00 2.90
232 233 3.849951 TAGGGCAGTGCTAGGCGC 61.850 66.667 16.11 0.00 42.61 6.53
233 234 2.107141 GTAGGGCAGTGCTAGGCG 59.893 66.667 16.11 0.00 0.00 5.52
234 235 1.700042 ATGGTAGGGCAGTGCTAGGC 61.700 60.000 16.11 3.54 0.00 3.93
235 236 0.839946 AATGGTAGGGCAGTGCTAGG 59.160 55.000 16.11 0.00 0.00 3.02
236 237 2.717639 AAATGGTAGGGCAGTGCTAG 57.282 50.000 16.11 0.00 0.00 3.42
237 238 3.714280 TCATAAATGGTAGGGCAGTGCTA 59.286 43.478 16.11 0.00 0.00 3.49
238 239 2.509548 TCATAAATGGTAGGGCAGTGCT 59.490 45.455 16.11 0.00 0.00 4.40
239 240 2.930950 TCATAAATGGTAGGGCAGTGC 58.069 47.619 6.55 6.55 0.00 4.40
240 241 7.231317 ACAAATATCATAAATGGTAGGGCAGTG 59.769 37.037 0.00 0.00 0.00 3.66
241 242 7.297614 ACAAATATCATAAATGGTAGGGCAGT 58.702 34.615 0.00 0.00 0.00 4.40
242 243 7.765695 ACAAATATCATAAATGGTAGGGCAG 57.234 36.000 0.00 0.00 0.00 4.85
243 244 7.563188 ACAACAAATATCATAAATGGTAGGGCA 59.437 33.333 0.00 0.00 0.00 5.36
244 245 7.951591 ACAACAAATATCATAAATGGTAGGGC 58.048 34.615 0.00 0.00 0.00 5.19
314 315 1.064060 GCGAGTGCATCCGCTATTTTT 59.936 47.619 22.68 0.00 46.96 1.94
315 316 0.657840 GCGAGTGCATCCGCTATTTT 59.342 50.000 22.68 0.00 46.96 1.82
316 317 2.311294 GCGAGTGCATCCGCTATTT 58.689 52.632 22.68 0.00 46.96 1.40
317 318 4.033894 GCGAGTGCATCCGCTATT 57.966 55.556 22.68 0.00 46.96 1.73
331 332 3.889044 GGCTCTCGGACGATGCGA 61.889 66.667 11.55 0.00 38.05 5.10
332 333 3.699955 TTGGCTCTCGGACGATGCG 62.700 63.158 11.55 0.00 0.00 4.73
333 334 1.019278 TTTTGGCTCTCGGACGATGC 61.019 55.000 10.06 10.06 0.00 3.91
334 335 1.594862 GATTTTGGCTCTCGGACGATG 59.405 52.381 0.00 0.00 0.00 3.84
335 336 1.482593 AGATTTTGGCTCTCGGACGAT 59.517 47.619 0.00 0.00 0.00 3.73
336 337 0.895530 AGATTTTGGCTCTCGGACGA 59.104 50.000 0.00 0.00 0.00 4.20
337 338 1.002366 CAGATTTTGGCTCTCGGACG 58.998 55.000 0.00 0.00 0.00 4.79
338 339 0.729690 GCAGATTTTGGCTCTCGGAC 59.270 55.000 0.00 0.00 0.00 4.79
339 340 0.615331 AGCAGATTTTGGCTCTCGGA 59.385 50.000 0.00 0.00 34.76 4.55
340 341 1.399791 GAAGCAGATTTTGGCTCTCGG 59.600 52.381 0.00 0.00 40.01 4.63
341 342 1.399791 GGAAGCAGATTTTGGCTCTCG 59.600 52.381 0.00 0.00 40.01 4.04
342 343 2.720915 AGGAAGCAGATTTTGGCTCTC 58.279 47.619 0.00 0.00 40.01 3.20
343 344 2.895242 AGGAAGCAGATTTTGGCTCT 57.105 45.000 0.00 0.00 40.01 4.09
344 345 3.582780 CAAAGGAAGCAGATTTTGGCTC 58.417 45.455 0.00 0.00 40.01 4.70
345 346 2.301009 CCAAAGGAAGCAGATTTTGGCT 59.699 45.455 9.03 0.00 41.96 4.75
346 347 2.299867 TCCAAAGGAAGCAGATTTTGGC 59.700 45.455 14.37 0.00 45.73 4.52
347 348 3.321682 TGTCCAAAGGAAGCAGATTTTGG 59.678 43.478 13.47 13.47 46.88 3.28
348 349 4.202141 TGTGTCCAAAGGAAGCAGATTTTG 60.202 41.667 0.00 0.00 31.38 2.44
349 350 3.960102 TGTGTCCAAAGGAAGCAGATTTT 59.040 39.130 0.00 0.00 31.38 1.82
350 351 3.319122 GTGTGTCCAAAGGAAGCAGATTT 59.681 43.478 0.00 0.00 31.38 2.17
351 352 2.887152 GTGTGTCCAAAGGAAGCAGATT 59.113 45.455 0.00 0.00 31.38 2.40
352 353 2.508526 GTGTGTCCAAAGGAAGCAGAT 58.491 47.619 0.00 0.00 31.38 2.90
353 354 1.476833 GGTGTGTCCAAAGGAAGCAGA 60.477 52.381 0.00 0.00 31.38 4.26
354 355 0.954452 GGTGTGTCCAAAGGAAGCAG 59.046 55.000 0.00 0.00 31.38 4.24
355 356 0.817634 CGGTGTGTCCAAAGGAAGCA 60.818 55.000 0.00 0.00 31.38 3.91
356 357 1.949257 CGGTGTGTCCAAAGGAAGC 59.051 57.895 0.00 0.00 31.38 3.86
357 358 0.535102 AGCGGTGTGTCCAAAGGAAG 60.535 55.000 0.00 0.00 31.38 3.46
358 359 0.759959 TAGCGGTGTGTCCAAAGGAA 59.240 50.000 0.00 0.00 31.38 3.36
359 360 0.981183 ATAGCGGTGTGTCCAAAGGA 59.019 50.000 0.00 0.00 35.57 3.36
360 361 1.821216 AATAGCGGTGTGTCCAAAGG 58.179 50.000 0.00 0.00 35.57 3.11
361 362 3.596214 ACTAATAGCGGTGTGTCCAAAG 58.404 45.455 0.00 0.00 35.57 2.77
362 363 3.688694 ACTAATAGCGGTGTGTCCAAA 57.311 42.857 0.00 0.00 35.57 3.28
363 364 3.688694 AACTAATAGCGGTGTGTCCAA 57.311 42.857 0.00 0.00 35.57 3.53
364 365 3.244284 ACAAACTAATAGCGGTGTGTCCA 60.244 43.478 0.00 0.00 28.87 4.02
365 366 3.332034 ACAAACTAATAGCGGTGTGTCC 58.668 45.455 0.00 0.00 28.87 4.02
366 367 4.689345 AGAACAAACTAATAGCGGTGTGTC 59.311 41.667 0.00 0.00 33.33 3.67
367 368 4.451096 CAGAACAAACTAATAGCGGTGTGT 59.549 41.667 0.00 0.00 35.66 3.72
368 369 4.669197 GCAGAACAAACTAATAGCGGTGTG 60.669 45.833 0.00 0.00 0.00 3.82
369 370 3.435671 GCAGAACAAACTAATAGCGGTGT 59.564 43.478 0.00 0.00 0.00 4.16
370 371 3.483574 CGCAGAACAAACTAATAGCGGTG 60.484 47.826 0.00 0.00 40.20 4.94
371 372 2.671396 CGCAGAACAAACTAATAGCGGT 59.329 45.455 0.00 0.00 40.20 5.68
372 373 3.304382 CGCAGAACAAACTAATAGCGG 57.696 47.619 0.00 0.00 40.20 5.52
373 374 2.671396 ACCGCAGAACAAACTAATAGCG 59.329 45.455 0.00 0.00 43.13 4.26
374 375 4.868734 ACTACCGCAGAACAAACTAATAGC 59.131 41.667 0.00 0.00 0.00 2.97
375 376 6.331061 AGACTACCGCAGAACAAACTAATAG 58.669 40.000 0.00 0.00 0.00 1.73
376 377 6.276832 AGACTACCGCAGAACAAACTAATA 57.723 37.500 0.00 0.00 0.00 0.98
377 378 5.148651 AGACTACCGCAGAACAAACTAAT 57.851 39.130 0.00 0.00 0.00 1.73
378 379 4.595762 AGACTACCGCAGAACAAACTAA 57.404 40.909 0.00 0.00 0.00 2.24
379 380 4.595762 AAGACTACCGCAGAACAAACTA 57.404 40.909 0.00 0.00 0.00 2.24
380 381 3.470645 AAGACTACCGCAGAACAAACT 57.529 42.857 0.00 0.00 0.00 2.66
381 382 3.678548 CCTAAGACTACCGCAGAACAAAC 59.321 47.826 0.00 0.00 0.00 2.93
382 383 3.322828 ACCTAAGACTACCGCAGAACAAA 59.677 43.478 0.00 0.00 0.00 2.83
383 384 2.895404 ACCTAAGACTACCGCAGAACAA 59.105 45.455 0.00 0.00 0.00 2.83
384 385 2.522185 ACCTAAGACTACCGCAGAACA 58.478 47.619 0.00 0.00 0.00 3.18
385 386 4.915158 ATACCTAAGACTACCGCAGAAC 57.085 45.455 0.00 0.00 0.00 3.01
386 387 5.198965 AGAATACCTAAGACTACCGCAGAA 58.801 41.667 0.00 0.00 0.00 3.02
387 388 4.789807 AGAATACCTAAGACTACCGCAGA 58.210 43.478 0.00 0.00 0.00 4.26
388 389 5.517322 AAGAATACCTAAGACTACCGCAG 57.483 43.478 0.00 0.00 0.00 5.18
389 390 5.927281 AAAGAATACCTAAGACTACCGCA 57.073 39.130 0.00 0.00 0.00 5.69
417 418 9.589111 CCAAGAGAATACCTAAGACTAAGTTTC 57.411 37.037 0.00 0.00 0.00 2.78
418 419 9.102453 ACCAAGAGAATACCTAAGACTAAGTTT 57.898 33.333 0.00 0.00 0.00 2.66
419 420 8.667592 ACCAAGAGAATACCTAAGACTAAGTT 57.332 34.615 0.00 0.00 0.00 2.66
420 421 7.894364 TGACCAAGAGAATACCTAAGACTAAGT 59.106 37.037 0.00 0.00 0.00 2.24
421 422 8.192110 GTGACCAAGAGAATACCTAAGACTAAG 58.808 40.741 0.00 0.00 0.00 2.18
422 423 7.148120 CGTGACCAAGAGAATACCTAAGACTAA 60.148 40.741 0.00 0.00 0.00 2.24
423 424 6.318144 CGTGACCAAGAGAATACCTAAGACTA 59.682 42.308 0.00 0.00 0.00 2.59
424 425 5.125739 CGTGACCAAGAGAATACCTAAGACT 59.874 44.000 0.00 0.00 0.00 3.24
425 426 5.105837 ACGTGACCAAGAGAATACCTAAGAC 60.106 44.000 0.00 0.00 0.00 3.01
426 427 5.014858 ACGTGACCAAGAGAATACCTAAGA 58.985 41.667 0.00 0.00 0.00 2.10
427 428 5.105877 TGACGTGACCAAGAGAATACCTAAG 60.106 44.000 0.00 0.00 0.00 2.18
428 429 4.768448 TGACGTGACCAAGAGAATACCTAA 59.232 41.667 0.00 0.00 0.00 2.69
429 430 4.338012 TGACGTGACCAAGAGAATACCTA 58.662 43.478 0.00 0.00 0.00 3.08
430 431 3.162666 TGACGTGACCAAGAGAATACCT 58.837 45.455 0.00 0.00 0.00 3.08
431 432 3.512680 CTGACGTGACCAAGAGAATACC 58.487 50.000 0.00 0.00 0.00 2.73
432 433 2.924290 GCTGACGTGACCAAGAGAATAC 59.076 50.000 0.00 0.00 0.00 1.89
433 434 2.826128 AGCTGACGTGACCAAGAGAATA 59.174 45.455 0.00 0.00 0.00 1.75
434 435 1.620819 AGCTGACGTGACCAAGAGAAT 59.379 47.619 0.00 0.00 0.00 2.40
435 436 1.040646 AGCTGACGTGACCAAGAGAA 58.959 50.000 0.00 0.00 0.00 2.87
436 437 0.315251 CAGCTGACGTGACCAAGAGA 59.685 55.000 8.42 0.00 0.00 3.10
437 438 0.668706 CCAGCTGACGTGACCAAGAG 60.669 60.000 17.39 0.00 0.00 2.85
438 439 1.367471 CCAGCTGACGTGACCAAGA 59.633 57.895 17.39 0.00 0.00 3.02
439 440 0.532862 AACCAGCTGACGTGACCAAG 60.533 55.000 17.39 0.00 0.00 3.61
440 441 0.753867 TAACCAGCTGACGTGACCAA 59.246 50.000 17.39 0.00 0.00 3.67
441 442 0.317160 CTAACCAGCTGACGTGACCA 59.683 55.000 17.39 0.00 0.00 4.02
442 443 0.389948 CCTAACCAGCTGACGTGACC 60.390 60.000 17.39 0.00 0.00 4.02
443 444 0.389948 CCCTAACCAGCTGACGTGAC 60.390 60.000 17.39 0.00 0.00 3.67
444 445 0.541063 TCCCTAACCAGCTGACGTGA 60.541 55.000 17.39 0.00 0.00 4.35
445 446 0.108615 CTCCCTAACCAGCTGACGTG 60.109 60.000 17.39 0.00 0.00 4.49
446 447 1.889530 GCTCCCTAACCAGCTGACGT 61.890 60.000 17.39 1.80 32.48 4.34
447 448 1.153549 GCTCCCTAACCAGCTGACG 60.154 63.158 17.39 1.02 32.48 4.35
448 449 0.107945 CTGCTCCCTAACCAGCTGAC 60.108 60.000 17.39 0.00 36.87 3.51
449 450 1.903877 GCTGCTCCCTAACCAGCTGA 61.904 60.000 17.39 0.00 46.28 4.26
450 451 1.451028 GCTGCTCCCTAACCAGCTG 60.451 63.158 6.78 6.78 46.28 4.24
451 452 2.993853 GCTGCTCCCTAACCAGCT 59.006 61.111 4.74 0.00 46.28 4.24
452 453 2.512515 CGCTGCTCCCTAACCAGC 60.513 66.667 0.00 1.99 46.30 4.85
453 454 2.187946 CCGCTGCTCCCTAACCAG 59.812 66.667 0.00 0.00 0.00 4.00
454 455 4.096003 GCCGCTGCTCCCTAACCA 62.096 66.667 0.00 0.00 33.53 3.67
455 456 4.858680 GGCCGCTGCTCCCTAACC 62.859 72.222 0.00 0.00 37.74 2.85
456 457 4.096003 TGGCCGCTGCTCCCTAAC 62.096 66.667 0.00 0.00 37.74 2.34
457 458 4.096003 GTGGCCGCTGCTCCCTAA 62.096 66.667 9.68 0.00 37.74 2.69
477 478 2.548480 GTGATTACCCATAGCTTTCCGC 59.452 50.000 0.00 0.00 39.57 5.54
478 479 2.800544 CGTGATTACCCATAGCTTTCCG 59.199 50.000 0.00 0.00 0.00 4.30
479 480 3.805207 ACGTGATTACCCATAGCTTTCC 58.195 45.455 0.00 0.00 0.00 3.13
480 481 5.353938 TGTACGTGATTACCCATAGCTTTC 58.646 41.667 0.00 0.00 0.00 2.62
481 482 5.105064 ACTGTACGTGATTACCCATAGCTTT 60.105 40.000 0.00 0.00 0.00 3.51
482 483 4.404715 ACTGTACGTGATTACCCATAGCTT 59.595 41.667 0.00 0.00 0.00 3.74
483 484 3.958798 ACTGTACGTGATTACCCATAGCT 59.041 43.478 0.00 0.00 0.00 3.32
484 485 4.317671 ACTGTACGTGATTACCCATAGC 57.682 45.455 0.00 0.00 0.00 2.97
485 486 7.040617 ACTCATACTGTACGTGATTACCCATAG 60.041 40.741 0.00 0.00 0.00 2.23
486 487 6.774170 ACTCATACTGTACGTGATTACCCATA 59.226 38.462 0.00 0.00 0.00 2.74
487 488 5.597182 ACTCATACTGTACGTGATTACCCAT 59.403 40.000 0.00 0.00 0.00 4.00
488 489 4.951715 ACTCATACTGTACGTGATTACCCA 59.048 41.667 0.00 0.00 0.00 4.51
489 490 5.066893 TGACTCATACTGTACGTGATTACCC 59.933 44.000 0.00 0.00 0.00 3.69
490 491 6.127810 TGACTCATACTGTACGTGATTACC 57.872 41.667 0.00 0.00 0.00 2.85
491 492 7.913821 TCATTGACTCATACTGTACGTGATTAC 59.086 37.037 0.00 0.00 0.00 1.89
492 493 7.992008 TCATTGACTCATACTGTACGTGATTA 58.008 34.615 0.00 0.00 0.00 1.75
493 494 6.863275 TCATTGACTCATACTGTACGTGATT 58.137 36.000 0.00 0.00 0.00 2.57
494 495 6.451064 TCATTGACTCATACTGTACGTGAT 57.549 37.500 0.00 0.00 0.00 3.06
495 496 5.890424 TCATTGACTCATACTGTACGTGA 57.110 39.130 0.00 0.00 0.00 4.35
496 497 5.288712 GGTTCATTGACTCATACTGTACGTG 59.711 44.000 0.00 0.00 0.00 4.49
497 498 5.047590 TGGTTCATTGACTCATACTGTACGT 60.048 40.000 0.00 0.00 0.00 3.57
498 499 5.407502 TGGTTCATTGACTCATACTGTACG 58.592 41.667 0.00 0.00 0.00 3.67
503 504 9.645059 CGAATATATGGTTCATTGACTCATACT 57.355 33.333 9.14 4.41 0.00 2.12
504 505 9.424319 ACGAATATATGGTTCATTGACTCATAC 57.576 33.333 9.14 0.00 0.00 2.39
505 506 9.423061 CACGAATATATGGTTCATTGACTCATA 57.577 33.333 9.29 9.29 0.00 2.15
506 507 7.388776 CCACGAATATATGGTTCATTGACTCAT 59.611 37.037 0.00 6.28 0.00 2.90
507 508 6.705825 CCACGAATATATGGTTCATTGACTCA 59.294 38.462 0.00 0.00 0.00 3.41
508 509 7.121974 CCACGAATATATGGTTCATTGACTC 57.878 40.000 0.00 0.00 0.00 3.36
536 537 1.132640 GACAACATGACGCTTCCGC 59.867 57.895 0.00 0.00 38.22 5.54
537 538 1.006825 TCGACAACATGACGCTTCCG 61.007 55.000 0.00 0.00 35.65 4.30
538 539 1.359848 ATCGACAACATGACGCTTCC 58.640 50.000 0.00 0.00 35.65 3.46
539 540 3.179830 AGTATCGACAACATGACGCTTC 58.820 45.455 0.00 0.00 35.65 3.86
540 541 3.232213 AGTATCGACAACATGACGCTT 57.768 42.857 0.00 0.00 35.65 4.68
541 542 2.941453 AGTATCGACAACATGACGCT 57.059 45.000 0.00 0.00 35.65 5.07
542 543 3.121328 GCATAGTATCGACAACATGACGC 60.121 47.826 0.00 0.00 35.65 5.19
543 544 3.425525 GGCATAGTATCGACAACATGACG 59.574 47.826 0.00 0.00 36.91 4.35
544 545 4.368315 TGGCATAGTATCGACAACATGAC 58.632 43.478 0.00 10.83 0.00 3.06
545 546 4.664150 TGGCATAGTATCGACAACATGA 57.336 40.909 0.00 0.00 0.00 3.07
546 547 5.237127 ACAATGGCATAGTATCGACAACATG 59.763 40.000 0.00 0.00 0.00 3.21
547 548 5.368145 ACAATGGCATAGTATCGACAACAT 58.632 37.500 0.00 0.00 0.00 2.71
548 549 4.765273 ACAATGGCATAGTATCGACAACA 58.235 39.130 0.00 0.00 0.00 3.33
549 550 6.838198 TTACAATGGCATAGTATCGACAAC 57.162 37.500 0.00 0.00 0.00 3.32
550 551 8.364894 ACTATTACAATGGCATAGTATCGACAA 58.635 33.333 0.00 0.00 32.92 3.18
551 552 7.812669 CACTATTACAATGGCATAGTATCGACA 59.187 37.037 0.00 0.00 32.92 4.35
552 553 7.813148 ACACTATTACAATGGCATAGTATCGAC 59.187 37.037 0.00 0.00 32.92 4.20
553 554 7.892609 ACACTATTACAATGGCATAGTATCGA 58.107 34.615 0.00 0.00 32.92 3.59
554 555 9.634163 TTACACTATTACAATGGCATAGTATCG 57.366 33.333 0.00 0.00 32.92 2.92
557 558 9.758651 CAGTTACACTATTACAATGGCATAGTA 57.241 33.333 0.00 0.00 32.92 1.82
558 559 7.715249 CCAGTTACACTATTACAATGGCATAGT 59.285 37.037 0.00 0.00 34.64 2.12
559 560 7.715249 ACCAGTTACACTATTACAATGGCATAG 59.285 37.037 0.00 0.00 0.00 2.23
560 561 7.497579 CACCAGTTACACTATTACAATGGCATA 59.502 37.037 0.00 0.00 0.00 3.14
561 562 6.318648 CACCAGTTACACTATTACAATGGCAT 59.681 38.462 0.00 0.00 0.00 4.40
562 563 5.645929 CACCAGTTACACTATTACAATGGCA 59.354 40.000 0.00 0.00 0.00 4.92
563 564 5.646360 ACACCAGTTACACTATTACAATGGC 59.354 40.000 0.00 0.00 0.00 4.40
564 565 7.103641 AGACACCAGTTACACTATTACAATGG 58.896 38.462 0.00 0.00 0.00 3.16
565 566 8.547967 AAGACACCAGTTACACTATTACAATG 57.452 34.615 0.00 0.00 0.00 2.82
572 573 9.787435 TGAAAAATAAGACACCAGTTACACTAT 57.213 29.630 0.00 0.00 0.00 2.12
603 604 6.480651 TCTGAATGAAACTTTGTTGTACGCTA 59.519 34.615 0.00 0.00 0.00 4.26
637 638 3.849527 AGTTGCTTGAGGAAGGGATTTT 58.150 40.909 0.00 0.00 0.00 1.82
638 639 3.532641 AGTTGCTTGAGGAAGGGATTT 57.467 42.857 0.00 0.00 0.00 2.17
639 640 3.160269 CAAGTTGCTTGAGGAAGGGATT 58.840 45.455 2.98 0.00 43.42 3.01
709 715 0.179062 GATGATGACGGGAGCTGCTT 60.179 55.000 2.53 0.00 0.00 3.91
717 723 1.202651 GGGTTAGGTGATGATGACGGG 60.203 57.143 0.00 0.00 0.00 5.28
720 726 1.485066 ACGGGGTTAGGTGATGATGAC 59.515 52.381 0.00 0.00 0.00 3.06
753 762 4.846779 TGTAATGAGGGAAAAGCAACAC 57.153 40.909 0.00 0.00 0.00 3.32
896 914 2.191128 AACTGATTCAGTGGAGTGGC 57.809 50.000 19.65 0.00 44.62 5.01
957 975 6.644347 TCCTATGATTGTGAAGGAAGAAGAC 58.356 40.000 0.00 0.00 35.20 3.01
985 1003 1.093159 GCCATTGCAGGAGAGTTCTG 58.907 55.000 0.00 0.00 37.47 3.02
986 1004 0.392193 CGCCATTGCAGGAGAGTTCT 60.392 55.000 0.00 0.00 37.32 3.01
987 1005 0.391661 TCGCCATTGCAGGAGAGTTC 60.392 55.000 0.00 0.00 37.32 3.01
994 1072 1.033746 ATCTTGGTCGCCATTGCAGG 61.034 55.000 0.00 0.00 37.32 4.85
996 1074 2.346766 ATATCTTGGTCGCCATTGCA 57.653 45.000 0.00 0.00 37.32 4.08
1046 1125 1.450025 GGAAGTAAAAGGGGTGAGCG 58.550 55.000 0.00 0.00 0.00 5.03
1048 1127 1.949079 GCCGGAAGTAAAAGGGGTGAG 60.949 57.143 5.05 0.00 0.00 3.51
1736 1816 2.320805 CATAGCATGCATTACGGTGC 57.679 50.000 21.98 0.00 45.25 5.01
1758 1838 0.933097 CGATGAGTCCATCTTTGCGG 59.067 55.000 0.00 0.00 45.37 5.69
1759 1839 1.645034 ACGATGAGTCCATCTTTGCG 58.355 50.000 0.00 0.00 45.37 4.85
1769 1849 7.931275 TGCTCCACATATATATACGATGAGTC 58.069 38.462 11.64 0.00 0.00 3.36
1774 1854 8.484214 AATCCTGCTCCACATATATATACGAT 57.516 34.615 0.00 0.00 0.00 3.73
1783 1863 4.165950 TGGTGTAAATCCTGCTCCACATAT 59.834 41.667 0.00 0.00 29.47 1.78
1784 1864 3.521531 TGGTGTAAATCCTGCTCCACATA 59.478 43.478 0.00 0.00 29.47 2.29
1805 1885 3.053831 AGGGGAACGTGTTACAGAATG 57.946 47.619 0.00 0.00 46.00 2.67
1999 2124 4.700213 CGTGTCTTTTGGGGATGTAATCTT 59.300 41.667 0.00 0.00 44.71 2.40
2023 2148 2.202743 GCGTCAGACATGCGGCTA 60.203 61.111 0.00 0.00 0.00 3.93
2027 2152 1.133253 CCTTTGCGTCAGACATGCG 59.867 57.895 0.41 0.00 40.33 4.73
2052 2177 2.370849 ACGGAGGACATTAACCAAGTGT 59.629 45.455 0.00 0.00 0.00 3.55
2088 2213 0.534412 CTCCCTCATCGTGCTTGAGT 59.466 55.000 0.00 0.00 39.16 3.41
2097 2222 3.808466 TCATTGACTTCTCCCTCATCG 57.192 47.619 0.00 0.00 0.00 3.84
2148 2273 3.013921 TGGTGTGTTTGGAAAGAGTGAC 58.986 45.455 0.00 0.00 0.00 3.67
2154 2279 5.766150 TCTATTGTGGTGTGTTTGGAAAG 57.234 39.130 0.00 0.00 0.00 2.62
2165 2290 5.911752 AGAGTGAAGCTATCTATTGTGGTG 58.088 41.667 0.00 0.00 0.00 4.17
2170 2295 6.507900 TCGGAAAGAGTGAAGCTATCTATTG 58.492 40.000 0.00 0.00 0.00 1.90
2173 2298 5.417894 TGTTCGGAAAGAGTGAAGCTATCTA 59.582 40.000 0.00 0.00 0.00 1.98
2175 2300 4.495422 TGTTCGGAAAGAGTGAAGCTATC 58.505 43.478 0.00 0.00 0.00 2.08
2181 2306 4.202274 TGTGGTATGTTCGGAAAGAGTGAA 60.202 41.667 0.00 0.00 0.00 3.18
2182 2307 3.322541 TGTGGTATGTTCGGAAAGAGTGA 59.677 43.478 0.00 0.00 0.00 3.41
2183 2308 3.659786 TGTGGTATGTTCGGAAAGAGTG 58.340 45.455 0.00 0.00 0.00 3.51
2184 2309 4.062991 GTTGTGGTATGTTCGGAAAGAGT 58.937 43.478 0.00 0.00 0.00 3.24
2185 2310 4.062293 TGTTGTGGTATGTTCGGAAAGAG 58.938 43.478 0.00 0.00 0.00 2.85
2186 2311 3.810941 GTGTTGTGGTATGTTCGGAAAGA 59.189 43.478 0.00 0.00 0.00 2.52
2187 2312 3.058501 GGTGTTGTGGTATGTTCGGAAAG 60.059 47.826 0.00 0.00 0.00 2.62
2190 2315 1.695242 AGGTGTTGTGGTATGTTCGGA 59.305 47.619 0.00 0.00 0.00 4.55
2191 2316 2.178912 AGGTGTTGTGGTATGTTCGG 57.821 50.000 0.00 0.00 0.00 4.30
2193 2318 4.281898 ACCTAGGTGTTGTGGTATGTTC 57.718 45.455 15.42 0.00 0.00 3.18
2234 2366 5.858581 GTGGAATTTGAACATCTAGCACAAC 59.141 40.000 0.00 0.00 0.00 3.32
2235 2367 5.534278 TGTGGAATTTGAACATCTAGCACAA 59.466 36.000 0.00 0.00 0.00 3.33
2273 8261 6.409005 CCAATGGGATGATACTCTTCTTCACT 60.409 42.308 0.00 0.00 35.59 3.41
2281 8269 8.742125 TTCTATAACCAATGGGATGATACTCT 57.258 34.615 3.55 0.00 38.05 3.24
2289 8277 5.388654 CTGGCTTTCTATAACCAATGGGAT 58.611 41.667 3.55 0.00 38.05 3.85
2290 8278 4.386312 CCTGGCTTTCTATAACCAATGGGA 60.386 45.833 3.55 0.00 38.05 4.37
2296 8284 3.731431 TCCTCCTGGCTTTCTATAACCA 58.269 45.455 0.00 0.00 0.00 3.67
2309 8297 1.679032 GGGACATTCGTTTCCTCCTGG 60.679 57.143 0.00 0.00 31.90 4.45
2316 8304 0.879090 GGGTGTGGGACATTCGTTTC 59.121 55.000 0.00 0.00 44.52 2.78
2336 8324 2.033407 CGCAAATGCCTATTCTCTCGTG 60.033 50.000 0.00 0.00 37.91 4.35
2360 8348 4.860907 GGCATGAAACAAATGAGCAACTAG 59.139 41.667 0.00 0.00 0.00 2.57
2364 8352 2.367894 TGGGCATGAAACAAATGAGCAA 59.632 40.909 0.00 0.00 0.00 3.91
2380 8368 1.228831 CCATCCAAGGTTGTGGGCA 60.229 57.895 0.00 0.00 39.34 5.36
2381 8369 2.649129 GCCATCCAAGGTTGTGGGC 61.649 63.158 8.98 0.00 39.34 5.36
2384 8372 0.251297 TCTGGCCATCCAAGGTTGTG 60.251 55.000 5.51 0.00 42.91 3.33
2391 8411 1.526887 GGATCGTCTGGCCATCCAA 59.473 57.895 16.10 0.00 42.91 3.53
2392 8412 2.796193 CGGATCGTCTGGCCATCCA 61.796 63.158 19.90 0.96 40.85 3.41
2409 8429 2.292569 TCATAGTAAGGCTCTTACCGCG 59.707 50.000 16.70 0.00 33.69 6.46
2418 8438 4.018415 TGGCTTTTCCTTCATAGTAAGGCT 60.018 41.667 0.00 0.00 44.89 4.58
2424 8444 7.961326 ATTTATGTGGCTTTTCCTTCATAGT 57.039 32.000 0.00 0.00 35.54 2.12
2435 8455 6.980397 GCAATGTAAGCTATTTATGTGGCTTT 59.020 34.615 2.92 0.00 43.47 3.51
2450 8470 0.459063 GGCCAAGCTGCAATGTAAGC 60.459 55.000 0.00 2.50 39.82 3.09
2457 8477 1.047596 TTTCCAAGGCCAAGCTGCAA 61.048 50.000 5.01 0.00 0.00 4.08
2460 8480 0.533951 GGATTTCCAAGGCCAAGCTG 59.466 55.000 5.01 0.00 35.64 4.24
2461 8481 0.114954 TGGATTTCCAAGGCCAAGCT 59.885 50.000 5.01 0.00 44.35 3.74
2462 8482 2.669878 TGGATTTCCAAGGCCAAGC 58.330 52.632 5.01 0.00 44.35 4.01
2473 8493 9.636965 CTTTTCTTTTCACGAAATTTGGATTTC 57.363 29.630 7.24 2.57 44.94 2.17
2490 8510 1.539827 CGCCACGATCCCTTTTCTTTT 59.460 47.619 0.00 0.00 0.00 2.27
2495 8515 2.750237 GGCGCCACGATCCCTTTT 60.750 61.111 24.80 0.00 0.00 2.27
2513 8533 4.153958 TCGCACACAATCACAATTAACC 57.846 40.909 0.00 0.00 0.00 2.85
2516 8536 4.820284 TGTTCGCACACAATCACAATTA 57.180 36.364 0.00 0.00 0.00 1.40
2527 8547 1.198397 CTCGACGTTGTTCGCACAC 59.802 57.895 1.96 0.00 44.19 3.82
2536 8556 3.183775 CCTTGAGGTTTTACTCGACGTTG 59.816 47.826 0.00 0.00 40.39 4.10
2537 8557 3.387397 CCTTGAGGTTTTACTCGACGTT 58.613 45.455 0.00 0.00 40.39 3.99
2551 8571 4.156739 GTCTGGATTGCTTTAACCTTGAGG 59.843 45.833 0.00 0.00 42.17 3.86
2555 8575 6.029346 CATTGTCTGGATTGCTTTAACCTT 57.971 37.500 0.00 0.00 0.00 3.50
2589 8609 2.051334 TGTTCACTTTGACCCCACAG 57.949 50.000 0.00 0.00 0.00 3.66
2592 8612 2.549992 CGAGATGTTCACTTTGACCCCA 60.550 50.000 0.00 0.00 0.00 4.96
2623 8643 9.712305 AGTAAATCCTCGAGTATATTCATTTGG 57.288 33.333 12.31 0.00 0.00 3.28
2628 8648 6.016527 ACGCAGTAAATCCTCGAGTATATTCA 60.017 38.462 12.31 0.00 41.94 2.57
2654 8674 4.156477 AGTCCTTCTAAGCAGTCAGTTCT 58.844 43.478 0.00 0.00 0.00 3.01
2658 8678 5.451242 GGATGTAGTCCTTCTAAGCAGTCAG 60.451 48.000 0.00 0.00 44.16 3.51
2677 8697 2.613026 TCGCCATAATCGTTGGATGT 57.387 45.000 0.00 0.00 36.26 3.06
2696 8716 2.288825 CGATACCGTGATGTATGGGCTT 60.289 50.000 0.00 0.00 39.98 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.