Multiple sequence alignment - TraesCS7D01G415700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G415700 chr7D 100.000 5220 0 0 348 5567 534524685 534519466 0.000000e+00 9640.0
1 TraesCS7D01G415700 chr7D 86.275 1071 118 16 4103 5159 534620948 534619893 0.000000e+00 1136.0
2 TraesCS7D01G415700 chr7D 83.189 1154 156 24 4019 5159 534469197 534468069 0.000000e+00 1022.0
3 TraesCS7D01G415700 chr7D 82.776 1167 164 23 4019 5172 534370847 534369705 0.000000e+00 1007.0
4 TraesCS7D01G415700 chr7D 90.043 462 41 5 1225 1682 534472595 534472135 1.340000e-165 593.0
5 TraesCS7D01G415700 chr7D 86.871 457 43 7 784 1228 534473076 534472625 3.870000e-136 496.0
6 TraesCS7D01G415700 chr7D 100.000 64 0 0 1 64 534525032 534524969 9.800000e-23 119.0
7 TraesCS7D01G415700 chr5D 96.704 1851 56 4 1695 3544 553025217 553027063 0.000000e+00 3075.0
8 TraesCS7D01G415700 chr5D 91.808 354 20 6 5217 5567 546447741 546447394 8.380000e-133 484.0
9 TraesCS7D01G415700 chrUn 96.413 1840 63 3 1708 3547 42242253 42240417 0.000000e+00 3029.0
10 TraesCS7D01G415700 chrUn 96.081 1837 68 4 1708 3544 268461674 268463506 0.000000e+00 2990.0
11 TraesCS7D01G415700 chrUn 96.033 1840 69 4 1708 3547 288954624 288952789 0.000000e+00 2990.0
12 TraesCS7D01G415700 chr7A 96.359 1840 65 2 1708 3547 674532944 674531107 0.000000e+00 3025.0
13 TraesCS7D01G415700 chr2A 96.244 1837 67 2 1708 3544 19962673 19964507 0.000000e+00 3009.0
14 TraesCS7D01G415700 chr2A 90.884 1448 104 14 3719 5159 755086984 755088410 0.000000e+00 1917.0
15 TraesCS7D01G415700 chr2A 82.798 1151 156 22 4019 5159 755114331 755115449 0.000000e+00 990.0
16 TraesCS7D01G415700 chr2A 92.371 485 31 5 1225 1706 755086155 755086636 0.000000e+00 686.0
17 TraesCS7D01G415700 chr2A 89.732 448 43 3 1225 1671 755251209 755250764 2.250000e-158 569.0
18 TraesCS7D01G415700 chr2A 88.437 467 41 8 773 1228 755078675 755079139 8.150000e-153 551.0
19 TraesCS7D01G415700 chr2A 86.864 472 46 10 773 1228 755251710 755251239 1.070000e-141 514.0
20 TraesCS7D01G415700 chr2A 87.585 443 54 1 1225 1667 755177045 755176604 3.850000e-141 512.0
21 TraesCS7D01G415700 chr2A 83.544 158 12 8 3533 3689 755086635 755086779 9.730000e-28 135.0
22 TraesCS7D01G415700 chr5B 95.870 1840 73 2 1708 3547 628605977 628604141 0.000000e+00 2974.0
23 TraesCS7D01G415700 chr5B 91.228 57 4 1 5154 5209 678086371 678086427 5.980000e-10 76.8
24 TraesCS7D01G415700 chr1B 95.917 1837 72 3 1708 3544 670208640 670206807 0.000000e+00 2974.0
25 TraesCS7D01G415700 chr4A 95.863 1837 72 4 1708 3544 714903384 714905216 0.000000e+00 2968.0
26 TraesCS7D01G415700 chr4A 95.442 351 15 1 5217 5567 659023833 659024182 4.870000e-155 558.0
27 TraesCS7D01G415700 chr4A 94.231 52 2 1 5159 5209 737821953 737821902 1.660000e-10 78.7
28 TraesCS7D01G415700 chr2B 84.838 1108 135 19 4039 5136 765582083 765583167 0.000000e+00 1085.0
29 TraesCS7D01G415700 chr2B 87.016 955 99 11 4213 5159 765573343 765574280 0.000000e+00 1053.0
30 TraesCS7D01G415700 chr2B 93.157 453 30 1 1225 1676 765572663 765573115 0.000000e+00 664.0
31 TraesCS7D01G415700 chr2B 90.578 467 33 4 773 1228 765572167 765572633 4.770000e-170 608.0
32 TraesCS7D01G415700 chr2B 89.760 459 45 2 1225 1682 765580669 765581126 2.230000e-163 586.0
33 TraesCS7D01G415700 chr2B 89.732 448 43 3 1225 1671 765762786 765762341 2.250000e-158 569.0
34 TraesCS7D01G415700 chr2B 87.826 460 40 7 781 1228 765580184 765580639 4.940000e-145 525.0
35 TraesCS7D01G415700 chr2B 85.977 435 50 1 804 1227 753829994 753829560 6.570000e-124 455.0
36 TraesCS7D01G415700 chr2B 94.545 55 3 0 5156 5210 782826538 782826592 9.940000e-13 86.1
37 TraesCS7D01G415700 chr2B 94.545 55 3 0 5156 5210 782951563 782951617 9.940000e-13 86.1
38 TraesCS7D01G415700 chr2B 93.103 58 3 1 5159 5215 534107284 534107227 3.570000e-12 84.2
39 TraesCS7D01G415700 chr2B 94.340 53 2 1 5158 5209 1539363 1539311 4.620000e-11 80.5
40 TraesCS7D01G415700 chr2D 88.385 904 85 7 4262 5159 623896454 623897343 0.000000e+00 1070.0
41 TraesCS7D01G415700 chr2D 83.161 1158 153 24 4019 5159 623913613 623914745 0.000000e+00 1020.0
42 TraesCS7D01G415700 chr2D 85.259 909 90 19 355 1228 623910398 623911297 0.000000e+00 896.0
43 TraesCS7D01G415700 chr2D 93.363 452 29 1 1225 1675 623895732 623896183 0.000000e+00 667.0
44 TraesCS7D01G415700 chr2D 89.542 459 46 2 1225 1682 623911327 623911784 1.040000e-161 580.0
45 TraesCS7D01G415700 chr2D 89.760 459 35 4 781 1228 623895245 623895702 1.340000e-160 577.0
46 TraesCS7D01G415700 chr2D 88.155 439 41 6 801 1228 624013177 624012739 3.850000e-141 512.0
47 TraesCS7D01G415700 chr6B 93.929 560 23 3 2988 3547 34060272 34059724 0.000000e+00 835.0
48 TraesCS7D01G415700 chr6B 92.351 353 21 6 5218 5567 130582445 130582794 1.080000e-136 497.0
49 TraesCS7D01G415700 chr6B 92.219 347 25 2 5221 5567 350955789 350955445 1.800000e-134 490.0
50 TraesCS7D01G415700 chr6B 89.489 352 28 5 5217 5567 708574587 708574930 2.380000e-118 436.0
51 TraesCS7D01G415700 chr3D 94.302 351 18 1 5217 5567 357584384 357584732 2.280000e-148 536.0
52 TraesCS7D01G415700 chr3B 93.732 351 22 0 5217 5567 807891970 807892320 1.370000e-145 527.0
53 TraesCS7D01G415700 chr3B 94.094 254 15 0 5217 5470 788572213 788572466 2.430000e-103 387.0
54 TraesCS7D01G415700 chr3B 94.118 51 3 0 5160 5210 756443493 756443543 1.660000e-10 78.7
55 TraesCS7D01G415700 chr4B 92.938 354 24 1 5214 5567 507989329 507989681 1.070000e-141 514.0
56 TraesCS7D01G415700 chr4D 93.865 326 20 0 5217 5542 484542850 484543175 5.010000e-135 492.0
57 TraesCS7D01G415700 chr6D 94.340 53 2 1 5158 5209 2968343 2968291 4.620000e-11 80.5
58 TraesCS7D01G415700 chr7B 92.593 54 3 1 5160 5213 638741302 638741354 5.980000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G415700 chr7D 534519466 534525032 5566 True 4879.500000 9640 100.000000 1 5567 2 chr7D.!!$R4 5566
1 TraesCS7D01G415700 chr7D 534619893 534620948 1055 True 1136.000000 1136 86.275000 4103 5159 1 chr7D.!!$R2 1056
2 TraesCS7D01G415700 chr7D 534369705 534370847 1142 True 1007.000000 1007 82.776000 4019 5172 1 chr7D.!!$R1 1153
3 TraesCS7D01G415700 chr7D 534468069 534473076 5007 True 703.666667 1022 86.701000 784 5159 3 chr7D.!!$R3 4375
4 TraesCS7D01G415700 chr5D 553025217 553027063 1846 False 3075.000000 3075 96.704000 1695 3544 1 chr5D.!!$F1 1849
5 TraesCS7D01G415700 chrUn 42240417 42242253 1836 True 3029.000000 3029 96.413000 1708 3547 1 chrUn.!!$R1 1839
6 TraesCS7D01G415700 chrUn 268461674 268463506 1832 False 2990.000000 2990 96.081000 1708 3544 1 chrUn.!!$F1 1836
7 TraesCS7D01G415700 chrUn 288952789 288954624 1835 True 2990.000000 2990 96.033000 1708 3547 1 chrUn.!!$R2 1839
8 TraesCS7D01G415700 chr7A 674531107 674532944 1837 True 3025.000000 3025 96.359000 1708 3547 1 chr7A.!!$R1 1839
9 TraesCS7D01G415700 chr2A 19962673 19964507 1834 False 3009.000000 3009 96.244000 1708 3544 1 chr2A.!!$F1 1836
10 TraesCS7D01G415700 chr2A 755114331 755115449 1118 False 990.000000 990 82.798000 4019 5159 1 chr2A.!!$F3 1140
11 TraesCS7D01G415700 chr2A 755086155 755088410 2255 False 912.666667 1917 88.933000 1225 5159 3 chr2A.!!$F4 3934
12 TraesCS7D01G415700 chr2A 755250764 755251710 946 True 541.500000 569 88.298000 773 1671 2 chr2A.!!$R2 898
13 TraesCS7D01G415700 chr5B 628604141 628605977 1836 True 2974.000000 2974 95.870000 1708 3547 1 chr5B.!!$R1 1839
14 TraesCS7D01G415700 chr1B 670206807 670208640 1833 True 2974.000000 2974 95.917000 1708 3544 1 chr1B.!!$R1 1836
15 TraesCS7D01G415700 chr4A 714903384 714905216 1832 False 2968.000000 2968 95.863000 1708 3544 1 chr4A.!!$F2 1836
16 TraesCS7D01G415700 chr2B 765572167 765574280 2113 False 775.000000 1053 90.250333 773 5159 3 chr2B.!!$F3 4386
17 TraesCS7D01G415700 chr2B 765580184 765583167 2983 False 732.000000 1085 87.474667 781 5136 3 chr2B.!!$F4 4355
18 TraesCS7D01G415700 chr2D 623910398 623914745 4347 False 832.000000 1020 85.987333 355 5159 3 chr2D.!!$F2 4804
19 TraesCS7D01G415700 chr2D 623895245 623897343 2098 False 771.333333 1070 90.502667 781 5159 3 chr2D.!!$F1 4378
20 TraesCS7D01G415700 chr6B 34059724 34060272 548 True 835.000000 835 93.929000 2988 3547 1 chr6B.!!$R1 559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 45 0.119155 AATGGGTGTGGAGAGGGAGA 59.881 55.0 0.0 0.0 0.00 3.71 F
1332 1405 0.108615 CTCGCACCGTCTTCTCCATT 60.109 55.0 0.0 0.0 0.00 3.16 F
1965 2076 0.529992 GGTCGCCAATACCTCCTTCG 60.530 60.0 0.0 0.0 33.97 3.79 F
3204 3315 0.542333 TGGACGGGAAAACAGTGTCA 59.458 50.0 0.0 0.0 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1347 1420 0.037326 TGGAACTGCTCATGTCGTCC 60.037 55.0 0.00 0.0 0.0 4.79 R
3134 3245 0.837691 TGGGCTGGAGCTTCTGAAGA 60.838 55.0 21.06 0.0 41.7 2.87 R
3409 3520 0.034337 GTGCGTAACTTCTGGTGGGA 59.966 55.0 0.00 0.0 0.0 4.37 R
5176 8168 0.032952 TATCTGGCCCGAACGTATGC 59.967 55.0 0.00 0.0 0.0 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.306245 TCCAACGTGGAGGGTTCT 57.694 55.556 0.00 0.00 42.67 3.01
24 25 2.535224 TCCAACGTGGAGGGTTCTT 58.465 52.632 0.00 0.00 42.67 2.52
25 26 1.719529 TCCAACGTGGAGGGTTCTTA 58.280 50.000 0.00 0.00 42.67 2.10
26 27 2.048601 TCCAACGTGGAGGGTTCTTAA 58.951 47.619 0.00 0.00 42.67 1.85
27 28 2.640826 TCCAACGTGGAGGGTTCTTAAT 59.359 45.455 0.00 0.00 42.67 1.40
28 29 2.747446 CCAACGTGGAGGGTTCTTAATG 59.253 50.000 0.00 0.00 40.96 1.90
29 30 2.747446 CAACGTGGAGGGTTCTTAATGG 59.253 50.000 0.00 0.00 0.00 3.16
30 31 1.280998 ACGTGGAGGGTTCTTAATGGG 59.719 52.381 0.00 0.00 0.00 4.00
31 32 1.280998 CGTGGAGGGTTCTTAATGGGT 59.719 52.381 0.00 0.00 0.00 4.51
32 33 2.723273 GTGGAGGGTTCTTAATGGGTG 58.277 52.381 0.00 0.00 0.00 4.61
33 34 2.041216 GTGGAGGGTTCTTAATGGGTGT 59.959 50.000 0.00 0.00 0.00 4.16
34 35 2.041081 TGGAGGGTTCTTAATGGGTGTG 59.959 50.000 0.00 0.00 0.00 3.82
35 36 2.620627 GGAGGGTTCTTAATGGGTGTGG 60.621 54.545 0.00 0.00 0.00 4.17
36 37 2.307686 GAGGGTTCTTAATGGGTGTGGA 59.692 50.000 0.00 0.00 0.00 4.02
37 38 2.308866 AGGGTTCTTAATGGGTGTGGAG 59.691 50.000 0.00 0.00 0.00 3.86
38 39 2.307686 GGGTTCTTAATGGGTGTGGAGA 59.692 50.000 0.00 0.00 0.00 3.71
39 40 3.610911 GGTTCTTAATGGGTGTGGAGAG 58.389 50.000 0.00 0.00 0.00 3.20
40 41 3.610911 GTTCTTAATGGGTGTGGAGAGG 58.389 50.000 0.00 0.00 0.00 3.69
41 42 2.196595 TCTTAATGGGTGTGGAGAGGG 58.803 52.381 0.00 0.00 0.00 4.30
42 43 2.196595 CTTAATGGGTGTGGAGAGGGA 58.803 52.381 0.00 0.00 0.00 4.20
43 44 1.879575 TAATGGGTGTGGAGAGGGAG 58.120 55.000 0.00 0.00 0.00 4.30
44 45 0.119155 AATGGGTGTGGAGAGGGAGA 59.881 55.000 0.00 0.00 0.00 3.71
45 46 0.326048 ATGGGTGTGGAGAGGGAGAG 60.326 60.000 0.00 0.00 0.00 3.20
46 47 1.388531 GGGTGTGGAGAGGGAGAGA 59.611 63.158 0.00 0.00 0.00 3.10
47 48 0.973496 GGGTGTGGAGAGGGAGAGAC 60.973 65.000 0.00 0.00 0.00 3.36
48 49 0.973496 GGTGTGGAGAGGGAGAGACC 60.973 65.000 0.00 0.00 38.08 3.85
57 58 2.760385 GGAGAGACCCGTCCCCTG 60.760 72.222 0.00 0.00 0.00 4.45
58 59 2.359404 GAGAGACCCGTCCCCTGA 59.641 66.667 0.00 0.00 0.00 3.86
59 60 1.305046 GAGAGACCCGTCCCCTGAA 60.305 63.158 0.00 0.00 0.00 3.02
60 61 0.903454 GAGAGACCCGTCCCCTGAAA 60.903 60.000 0.00 0.00 0.00 2.69
61 62 0.473117 AGAGACCCGTCCCCTGAAAA 60.473 55.000 0.00 0.00 0.00 2.29
62 63 0.618981 GAGACCCGTCCCCTGAAAAT 59.381 55.000 0.00 0.00 0.00 1.82
63 64 0.618981 AGACCCGTCCCCTGAAAATC 59.381 55.000 0.00 0.00 0.00 2.17
369 370 5.597813 CAAGCTGAAGTTAAGTAGGTGTG 57.402 43.478 0.00 0.00 0.00 3.82
386 387 5.111293 AGGTGTGGTATTATCGGTTTTACG 58.889 41.667 0.00 0.00 0.00 3.18
389 390 4.122046 GTGGTATTATCGGTTTTACGCCT 58.878 43.478 0.00 0.00 0.00 5.52
395 396 2.188062 TCGGTTTTACGCCTTCCATT 57.812 45.000 0.00 0.00 0.00 3.16
396 397 2.078392 TCGGTTTTACGCCTTCCATTC 58.922 47.619 0.00 0.00 0.00 2.67
397 398 2.081462 CGGTTTTACGCCTTCCATTCT 58.919 47.619 0.00 0.00 0.00 2.40
398 399 3.055963 TCGGTTTTACGCCTTCCATTCTA 60.056 43.478 0.00 0.00 0.00 2.10
432 433 6.420903 GGTGTTCTAAAATTTTCAGAAGCCAC 59.579 38.462 6.72 16.03 30.42 5.01
434 435 7.653311 GTGTTCTAAAATTTTCAGAAGCCACAT 59.347 33.333 20.86 0.44 31.05 3.21
436 437 9.045223 GTTCTAAAATTTTCAGAAGCCACATTT 57.955 29.630 6.72 0.00 0.00 2.32
437 438 8.816640 TCTAAAATTTTCAGAAGCCACATTTC 57.183 30.769 6.72 0.00 0.00 2.17
520 522 8.289440 TGTTAAAATATATGTCACGACGGATC 57.711 34.615 0.00 0.00 0.00 3.36
526 528 5.707242 ATATGTCACGACGGATCTAATGT 57.293 39.130 0.00 0.00 0.00 2.71
530 532 4.397103 TGTCACGACGGATCTAATGTTACT 59.603 41.667 0.00 0.00 0.00 2.24
542 544 8.276325 GGATCTAATGTTACTAATTCAGCGTTG 58.724 37.037 0.00 0.00 0.00 4.10
559 561 4.627467 AGCGTTGTAGATAAGCTTGACTTG 59.373 41.667 9.86 0.00 39.58 3.16
617 619 8.200792 CAGAGCAAGTAGGTACTTAAATCAGAT 58.799 37.037 2.06 0.00 44.19 2.90
619 621 8.950208 AGCAAGTAGGTACTTAAATCAGATTC 57.050 34.615 2.06 0.00 44.19 2.52
685 687 9.765295 TTATATTATAAGACAGAGGGGGTACTC 57.235 37.037 0.00 0.00 37.77 2.59
688 690 3.277416 AAGACAGAGGGGGTACTCTTT 57.723 47.619 0.00 0.00 45.21 2.52
699 701 6.382087 AGGGGGTACTCTTTTGAAAGAAATT 58.618 36.000 7.51 0.00 43.84 1.82
705 707 9.880064 GGTACTCTTTTGAAAGAAATTGAGTAC 57.120 33.333 16.76 16.76 46.95 2.73
797 821 1.132436 TCGTACGCCGAACTACACG 59.868 57.895 11.24 0.00 44.03 4.49
817 845 4.133796 GGAAGCAATGGTGGCCGC 62.134 66.667 8.12 8.12 0.00 6.53
818 846 4.133796 GAAGCAATGGTGGCCGCC 62.134 66.667 29.34 29.34 0.00 6.13
844 872 0.181114 CTTGTGCCCTGGCTAGCATA 59.819 55.000 18.24 3.74 41.86 3.14
870 909 4.062293 CGTCGTCTCTCTATCTCCTCAAT 58.938 47.826 0.00 0.00 0.00 2.57
882 921 1.068753 CCTCAATCTCCTCGCGCAT 59.931 57.895 8.75 0.00 0.00 4.73
943 982 2.606587 ATCGGCAGCCTCCACCTTT 61.607 57.895 10.54 0.00 0.00 3.11
1076 1115 1.682257 GGGAGTTCCTGCAGAAGCT 59.318 57.895 17.39 0.35 42.74 3.74
1314 1387 2.769095 GACCAGCCTGAACCTTATCTCT 59.231 50.000 0.00 0.00 0.00 3.10
1332 1405 0.108615 CTCGCACCGTCTTCTCCATT 60.109 55.000 0.00 0.00 0.00 3.16
1336 1409 1.338200 GCACCGTCTTCTCCATTGACT 60.338 52.381 0.00 0.00 0.00 3.41
1347 1420 1.081892 CCATTGACTTCACGAGCCTG 58.918 55.000 0.00 0.00 0.00 4.85
1368 1441 2.143122 GACGACATGAGCAGTTCCAAA 58.857 47.619 0.00 0.00 0.00 3.28
1446 1519 4.388499 TTCTTCCCGGTGCTCGCC 62.388 66.667 0.00 0.00 37.59 5.54
1599 1672 2.743538 GTGCTGCTCGATGTGGCA 60.744 61.111 0.00 0.00 36.94 4.92
1675 1752 5.673514 TCACGGTAACCTACAACTTTCTTT 58.326 37.500 0.00 0.00 0.00 2.52
1677 1754 6.258507 TCACGGTAACCTACAACTTTCTTTTC 59.741 38.462 0.00 0.00 0.00 2.29
1682 1759 3.564225 ACCTACAACTTTCTTTTCTGCGG 59.436 43.478 0.00 0.00 0.00 5.69
1685 1762 5.237779 CCTACAACTTTCTTTTCTGCGGTTA 59.762 40.000 0.00 0.00 0.00 2.85
1693 1803 8.290325 ACTTTCTTTTCTGCGGTTATAAAAGAG 58.710 33.333 15.48 10.33 44.36 2.85
1694 1804 7.972832 TTCTTTTCTGCGGTTATAAAAGAGA 57.027 32.000 15.48 8.08 44.36 3.10
1723 1834 4.672409 ACTCTGTTTTTGCGAGGAAAAAG 58.328 39.130 13.99 6.60 35.89 2.27
1730 1841 3.934457 TTGCGAGGAAAAAGGGAAATC 57.066 42.857 0.00 0.00 0.00 2.17
1792 1903 4.452733 CCTCGTCCGGCCCAGAAC 62.453 72.222 0.00 0.00 0.00 3.01
1833 1944 6.483974 TGCACTTCTTTATTCGACCAAAGTTA 59.516 34.615 14.44 6.59 34.17 2.24
1834 1945 7.012515 TGCACTTCTTTATTCGACCAAAGTTAA 59.987 33.333 14.44 5.41 34.17 2.01
1875 1986 2.031258 TTTGTTCACGCCTCACAAGA 57.969 45.000 0.00 0.00 32.16 3.02
1965 2076 0.529992 GGTCGCCAATACCTCCTTCG 60.530 60.000 0.00 0.00 33.97 3.79
2183 2294 1.149101 TCCTTGGCAGAAAAGGACCT 58.851 50.000 1.46 0.00 46.56 3.85
2234 2345 1.380302 GTGCCTCCCATCCAAGTGT 59.620 57.895 0.00 0.00 0.00 3.55
2242 2353 0.819582 CCATCCAAGTGTTGATGGCC 59.180 55.000 0.00 0.00 38.22 5.36
2248 2359 2.619849 CCAAGTGTTGATGGCCTCTCAT 60.620 50.000 3.32 0.00 0.00 2.90
2487 2598 1.367471 CTCTGGTGACAAGTCCGCA 59.633 57.895 0.00 0.00 42.06 5.69
2507 2618 3.460103 CAAGCACATGAAAAAGCCACTT 58.540 40.909 0.00 0.00 0.00 3.16
2598 2709 0.674581 CCGCTTGAGGACATCTGCAA 60.675 55.000 0.00 0.00 0.00 4.08
2694 2805 3.576078 TTATTAGTCCATGTGGCCAGG 57.424 47.619 5.11 3.83 34.44 4.45
2879 2990 2.059541 GAAGATACCATTACGCTCCGC 58.940 52.381 0.00 0.00 0.00 5.54
3021 3132 1.346068 AGCAGCTCGGAAACTCTTCTT 59.654 47.619 0.00 0.00 0.00 2.52
3051 3162 2.034066 CCCTGCACGGTGATTGGT 59.966 61.111 13.29 0.00 0.00 3.67
3057 3168 1.081509 CACGGTGATTGGTTTGCCG 60.082 57.895 0.74 0.00 46.83 5.69
3134 3245 4.403734 CCTACCCGCCATAAAATACCATT 58.596 43.478 0.00 0.00 0.00 3.16
3204 3315 0.542333 TGGACGGGAAAACAGTGTCA 59.458 50.000 0.00 0.00 0.00 3.58
3305 3416 2.625823 GGCGTGCCAGCAAAGCTTA 61.626 57.895 17.17 0.00 36.40 3.09
3380 3491 3.197790 CTTCTCCCATGCACGCCG 61.198 66.667 0.00 0.00 0.00 6.46
3409 3520 2.973082 GCCGCCCTTTTTCAGCAT 59.027 55.556 0.00 0.00 0.00 3.79
3494 3605 7.380431 AGACGCTCATTAGATATGTAGGTAC 57.620 40.000 0.00 0.00 0.00 3.34
3555 3695 3.558931 TGATTCCATAGACCGCACATT 57.441 42.857 0.00 0.00 0.00 2.71
3563 3703 1.450312 GACCGCACATTAGCCTGCT 60.450 57.895 0.00 0.00 0.00 4.24
3765 6704 5.527582 ACAGACTTAGAAACACAACATGGAC 59.472 40.000 0.00 0.00 0.00 4.02
3767 6706 5.527582 AGACTTAGAAACACAACATGGACAC 59.472 40.000 0.00 0.00 0.00 3.67
3829 6770 8.325787 ACCAGAAACATGGACACATATAACTTA 58.674 33.333 0.00 0.00 43.57 2.24
3937 6878 7.872163 TGACATGTCATGTTTTCTATTTTGC 57.128 32.000 24.56 3.33 45.03 3.68
3939 6880 6.676950 ACATGTCATGTTTTCTATTTTGCGA 58.323 32.000 12.87 0.00 41.63 5.10
3945 6886 8.316046 GTCATGTTTTCTATTTTGCGAATCATG 58.684 33.333 0.00 0.00 35.58 3.07
3949 6890 8.028354 TGTTTTCTATTTTGCGAATCATGACAT 58.972 29.630 0.00 0.00 0.00 3.06
3953 6894 3.388149 TTTGCGAATCATGACATGTCG 57.612 42.857 20.54 18.98 33.51 4.35
3997 6938 9.956720 CAAAGAACTGAATTGTCTAAAACTCAT 57.043 29.630 0.00 0.00 0.00 2.90
4025 6978 7.298854 GGAATTTTCCTCTACAAGAAAACTCG 58.701 38.462 1.97 0.00 42.87 4.18
4037 6990 7.145932 ACAAGAAAACTCGAATTCTTATGGG 57.854 36.000 15.88 9.34 42.41 4.00
4073 7028 8.635124 CGTTGTTTCAAACCAATCATATTGTAC 58.365 33.333 0.00 0.00 0.00 2.90
4078 7033 8.755696 TTCAAACCAATCATATTGTACTTTGC 57.244 30.769 0.00 0.00 0.00 3.68
4080 7035 5.499139 ACCAATCATATTGTACTTTGCCG 57.501 39.130 0.00 0.00 0.00 5.69
4081 7036 4.202010 ACCAATCATATTGTACTTTGCCGC 60.202 41.667 0.00 0.00 0.00 6.53
4098 7055 3.066380 GCCGCATTTCAAAATTTCCACT 58.934 40.909 0.00 0.00 0.00 4.00
4101 7058 5.220453 GCCGCATTTCAAAATTTCCACTATG 60.220 40.000 0.00 0.00 0.00 2.23
4109 7066 5.649395 TCAAAATTTCCACTATGGCTCTCAG 59.351 40.000 0.00 0.00 37.47 3.35
4134 7091 0.948623 TTGCACTTCACCATCGGTCG 60.949 55.000 0.00 0.00 31.02 4.79
4137 7096 2.885644 CTTCACCATCGGTCGGCG 60.886 66.667 0.00 0.00 31.02 6.46
4179 7148 9.547753 TCAAGAACAATGGCTTCTACTATAATC 57.452 33.333 0.00 0.00 0.00 1.75
4186 7155 9.288576 CAATGGCTTCTACTATAATCCAATGAA 57.711 33.333 0.00 0.00 28.71 2.57
4248 7220 3.921119 TTGCAAATATGATCCATCCGC 57.079 42.857 0.00 0.00 0.00 5.54
4249 7221 1.805943 TGCAAATATGATCCATCCGCG 59.194 47.619 0.00 0.00 0.00 6.46
4250 7222 1.131126 GCAAATATGATCCATCCGCGG 59.869 52.381 22.12 22.12 0.00 6.46
4278 7255 3.639716 TCGCAATGTGCAATTCAAAGA 57.360 38.095 0.61 0.00 45.36 2.52
4350 7337 7.851387 TGTGTGACACTTGTTTAGTTTATCA 57.149 32.000 17.47 0.00 33.85 2.15
4492 7479 3.703052 GCTTCTCCAAAACCCATCATCAT 59.297 43.478 0.00 0.00 0.00 2.45
4503 7490 3.152341 CCCATCATCATTGGCTAAGGTC 58.848 50.000 0.00 0.00 32.60 3.85
4511 7498 1.812686 TTGGCTAAGGTCTGCGACGT 61.813 55.000 0.00 0.00 32.65 4.34
4526 7513 2.233355 CGACGTGCTTGCACAAATTAG 58.767 47.619 22.97 9.82 0.00 1.73
4553 7540 6.238869 GGCTCAAGAAGAAACATTGAAGAAGT 60.239 38.462 0.00 0.00 32.87 3.01
4575 7562 7.100458 AGTTGATATTGTTTGATTGCCCTAC 57.900 36.000 0.00 0.00 0.00 3.18
4796 7783 3.007506 TGTTCAGCGATTGACTTTAGGGA 59.992 43.478 0.00 0.00 34.94 4.20
4801 7788 3.197766 AGCGATTGACTTTAGGGATGTGA 59.802 43.478 0.00 0.00 0.00 3.58
4809 7796 8.421249 TTGACTTTAGGGATGTGAATTTTGAT 57.579 30.769 0.00 0.00 0.00 2.57
4825 7813 4.387026 TTTGATCTCCTTCCATTGGTGT 57.613 40.909 1.86 0.00 0.00 4.16
4861 7849 0.614294 CCTGGAATGGCATTGGCAAA 59.386 50.000 19.07 2.92 42.43 3.68
4874 7862 1.473258 TGGCAAATAGGATGGTGCAC 58.527 50.000 8.80 8.80 38.78 4.57
4876 7864 0.381801 GCAAATAGGATGGTGCACGG 59.618 55.000 11.45 0.00 36.97 4.94
4890 7878 1.227380 CACGGGATGCTAGCTCCAC 60.227 63.158 25.17 14.58 34.24 4.02
4936 7924 1.672356 CTGTTGAGCTGGAACGGGG 60.672 63.158 0.00 0.00 33.56 5.73
4950 7938 1.814429 ACGGGGTGGGATTGATATGA 58.186 50.000 0.00 0.00 0.00 2.15
4953 7941 3.140144 ACGGGGTGGGATTGATATGAAAT 59.860 43.478 0.00 0.00 0.00 2.17
4997 7985 0.260816 AGGTCGTGCCCCTCTGTATA 59.739 55.000 0.00 0.00 38.26 1.47
5164 8156 9.912634 AAACATTTCATACCTTCATTACACAAG 57.087 29.630 0.00 0.00 0.00 3.16
5173 8165 7.186021 ACCTTCATTACACAAGTAGAAAACG 57.814 36.000 0.00 0.00 0.00 3.60
5174 8166 6.204108 ACCTTCATTACACAAGTAGAAAACGG 59.796 38.462 0.00 0.00 0.00 4.44
5175 8167 6.348213 CCTTCATTACACAAGTAGAAAACGGG 60.348 42.308 0.00 0.00 0.00 5.28
5176 8168 4.998672 TCATTACACAAGTAGAAAACGGGG 59.001 41.667 0.00 0.00 0.00 5.73
5177 8169 1.601166 ACACAAGTAGAAAACGGGGC 58.399 50.000 0.00 0.00 0.00 5.80
5178 8170 1.134037 ACACAAGTAGAAAACGGGGCA 60.134 47.619 0.00 0.00 0.00 5.36
5179 8171 2.159382 CACAAGTAGAAAACGGGGCAT 58.841 47.619 0.00 0.00 0.00 4.40
5180 8172 3.244630 ACACAAGTAGAAAACGGGGCATA 60.245 43.478 0.00 0.00 0.00 3.14
5181 8173 3.126343 CACAAGTAGAAAACGGGGCATAC 59.874 47.826 0.00 0.00 0.00 2.39
5182 8174 2.304751 AGTAGAAAACGGGGCATACG 57.695 50.000 0.00 0.00 37.36 3.06
5188 8180 4.151582 ACGGGGCATACGTTCGGG 62.152 66.667 0.00 0.00 42.70 5.14
5192 8184 2.895372 GGCATACGTTCGGGCCAG 60.895 66.667 4.39 0.00 45.70 4.85
5193 8185 2.185867 GCATACGTTCGGGCCAGA 59.814 61.111 4.39 1.93 0.00 3.86
5194 8186 1.227556 GCATACGTTCGGGCCAGAT 60.228 57.895 6.36 0.00 0.00 2.90
5195 8187 0.032952 GCATACGTTCGGGCCAGATA 59.967 55.000 6.36 0.00 0.00 1.98
5196 8188 1.539496 GCATACGTTCGGGCCAGATAA 60.539 52.381 6.36 0.00 0.00 1.75
5197 8189 2.404215 CATACGTTCGGGCCAGATAAG 58.596 52.381 6.36 3.86 0.00 1.73
5198 8190 0.103572 TACGTTCGGGCCAGATAAGC 59.896 55.000 6.36 0.00 0.00 3.09
5206 8198 1.539157 GGCCAGATAAGCCCATTAGC 58.461 55.000 0.00 0.00 45.16 3.09
5207 8199 1.539157 GCCAGATAAGCCCATTAGCC 58.461 55.000 0.00 0.00 29.64 3.93
5208 8200 1.888391 GCCAGATAAGCCCATTAGCCC 60.888 57.143 0.00 0.00 29.64 5.19
5209 8201 1.707427 CCAGATAAGCCCATTAGCCCT 59.293 52.381 0.00 0.00 29.64 5.19
5210 8202 2.290577 CCAGATAAGCCCATTAGCCCTC 60.291 54.545 0.00 0.00 29.64 4.30
5211 8203 1.625818 AGATAAGCCCATTAGCCCTCG 59.374 52.381 0.00 0.00 29.64 4.63
5212 8204 1.348036 GATAAGCCCATTAGCCCTCGT 59.652 52.381 0.00 0.00 0.00 4.18
5213 8205 0.756903 TAAGCCCATTAGCCCTCGTC 59.243 55.000 0.00 0.00 0.00 4.20
5214 8206 2.280186 GCCCATTAGCCCTCGTCG 60.280 66.667 0.00 0.00 0.00 5.12
5215 8207 2.280186 CCCATTAGCCCTCGTCGC 60.280 66.667 0.00 0.00 0.00 5.19
5216 8208 2.280186 CCATTAGCCCTCGTCGCC 60.280 66.667 0.00 0.00 0.00 5.54
5217 8209 2.658593 CATTAGCCCTCGTCGCCG 60.659 66.667 0.00 0.00 0.00 6.46
5218 8210 3.145551 ATTAGCCCTCGTCGCCGT 61.146 61.111 0.00 0.00 35.01 5.68
5219 8211 3.135056 ATTAGCCCTCGTCGCCGTC 62.135 63.158 0.00 0.00 35.01 4.79
5246 8238 4.459089 GTGCCCTGCCTCCTCGTC 62.459 72.222 0.00 0.00 0.00 4.20
5249 8241 3.827898 CCCTGCCTCCTCGTCGAC 61.828 72.222 5.18 5.18 0.00 4.20
5250 8242 4.180946 CCTGCCTCCTCGTCGACG 62.181 72.222 31.30 31.30 41.45 5.12
5251 8243 3.432588 CTGCCTCCTCGTCGACGT 61.433 66.667 34.40 0.00 40.80 4.34
5252 8244 3.384014 CTGCCTCCTCGTCGACGTC 62.384 68.421 34.40 18.32 40.80 4.34
5253 8245 4.517703 GCCTCCTCGTCGACGTCG 62.518 72.222 34.40 31.30 40.80 5.12
5254 8246 4.517703 CCTCCTCGTCGACGTCGC 62.518 72.222 34.40 24.34 40.80 5.19
5255 8247 4.517703 CTCCTCGTCGACGTCGCC 62.518 72.222 34.40 21.74 40.80 5.54
5293 8285 4.463879 CGCCCCCAGCAGAGTGAG 62.464 72.222 0.00 0.00 44.04 3.51
5294 8286 4.792804 GCCCCCAGCAGAGTGAGC 62.793 72.222 0.00 0.00 42.97 4.26
5295 8287 3.007920 CCCCCAGCAGAGTGAGCT 61.008 66.667 0.00 0.00 44.62 4.09
5296 8288 2.583520 CCCCAGCAGAGTGAGCTC 59.416 66.667 6.82 6.82 41.14 4.09
5297 8289 2.183811 CCCAGCAGAGTGAGCTCG 59.816 66.667 9.64 0.00 46.03 5.03
5298 8290 2.508887 CCAGCAGAGTGAGCTCGC 60.509 66.667 19.76 19.76 46.03 5.03
5299 8291 2.879933 CAGCAGAGTGAGCTCGCG 60.880 66.667 21.01 0.00 46.03 5.87
5300 8292 4.792648 AGCAGAGTGAGCTCGCGC 62.793 66.667 21.69 21.69 46.03 6.86
5302 8294 4.426112 CAGAGTGAGCTCGCGCCA 62.426 66.667 24.79 0.00 46.03 5.69
5303 8295 4.427661 AGAGTGAGCTCGCGCCAC 62.428 66.667 24.79 15.55 46.03 5.01
5308 8300 4.577246 GAGCTCGCGCCACCCTAG 62.577 72.222 0.00 0.00 36.60 3.02
5310 8302 3.524606 GCTCGCGCCACCCTAGTA 61.525 66.667 0.00 0.00 0.00 1.82
5311 8303 3.072486 GCTCGCGCCACCCTAGTAA 62.072 63.158 0.00 0.00 0.00 2.24
5312 8304 1.065928 CTCGCGCCACCCTAGTAAG 59.934 63.158 0.00 0.00 0.00 2.34
5313 8305 2.585247 CGCGCCACCCTAGTAAGC 60.585 66.667 0.00 0.00 0.00 3.09
5314 8306 2.901042 GCGCCACCCTAGTAAGCT 59.099 61.111 0.00 0.00 0.00 3.74
5315 8307 1.227292 GCGCCACCCTAGTAAGCTC 60.227 63.158 0.00 0.00 0.00 4.09
5316 8308 1.956629 GCGCCACCCTAGTAAGCTCA 61.957 60.000 0.00 0.00 0.00 4.26
5317 8309 0.753262 CGCCACCCTAGTAAGCTCAT 59.247 55.000 0.00 0.00 0.00 2.90
5318 8310 1.139058 CGCCACCCTAGTAAGCTCATT 59.861 52.381 0.00 0.00 0.00 2.57
5319 8311 2.803492 CGCCACCCTAGTAAGCTCATTC 60.803 54.545 0.00 0.00 0.00 2.67
5320 8312 2.436173 GCCACCCTAGTAAGCTCATTCT 59.564 50.000 0.00 0.00 0.00 2.40
5321 8313 3.493524 GCCACCCTAGTAAGCTCATTCTC 60.494 52.174 0.00 0.00 0.00 2.87
5322 8314 3.070302 CCACCCTAGTAAGCTCATTCTCC 59.930 52.174 0.00 0.00 0.00 3.71
5323 8315 3.964031 CACCCTAGTAAGCTCATTCTCCT 59.036 47.826 0.00 0.00 0.00 3.69
5324 8316 4.038642 CACCCTAGTAAGCTCATTCTCCTC 59.961 50.000 0.00 0.00 0.00 3.71
5325 8317 3.254657 CCCTAGTAAGCTCATTCTCCTCG 59.745 52.174 0.00 0.00 0.00 4.63
5326 8318 3.886505 CCTAGTAAGCTCATTCTCCTCGT 59.113 47.826 0.00 0.00 0.00 4.18
5327 8319 4.023536 CCTAGTAAGCTCATTCTCCTCGTC 60.024 50.000 0.00 0.00 0.00 4.20
5328 8320 2.356382 AGTAAGCTCATTCTCCTCGTCG 59.644 50.000 0.00 0.00 0.00 5.12
5329 8321 0.179124 AAGCTCATTCTCCTCGTCGC 60.179 55.000 0.00 0.00 0.00 5.19
5330 8322 1.590259 GCTCATTCTCCTCGTCGCC 60.590 63.158 0.00 0.00 0.00 5.54
5331 8323 1.298713 CTCATTCTCCTCGTCGCCG 60.299 63.158 0.00 0.00 0.00 6.46
5332 8324 2.278857 CATTCTCCTCGTCGCCGG 60.279 66.667 0.00 0.00 33.95 6.13
5333 8325 4.208686 ATTCTCCTCGTCGCCGGC 62.209 66.667 19.07 19.07 33.95 6.13
5347 8339 3.227276 CGGCCGCCCTCTGTAGAT 61.227 66.667 14.67 0.00 0.00 1.98
5348 8340 2.423446 GGCCGCCCTCTGTAGATG 59.577 66.667 0.00 0.00 0.00 2.90
5349 8341 2.423446 GCCGCCCTCTGTAGATGG 59.577 66.667 0.00 0.00 33.62 3.51
5350 8342 2.134287 GCCGCCCTCTGTAGATGGA 61.134 63.158 7.31 0.00 32.39 3.41
5351 8343 1.476007 GCCGCCCTCTGTAGATGGAT 61.476 60.000 7.31 0.00 32.39 3.41
5352 8344 0.319728 CCGCCCTCTGTAGATGGATG 59.680 60.000 7.31 0.00 32.39 3.51
5353 8345 1.332195 CGCCCTCTGTAGATGGATGA 58.668 55.000 7.31 0.00 32.39 2.92
5354 8346 1.898472 CGCCCTCTGTAGATGGATGAT 59.102 52.381 7.31 0.00 32.39 2.45
5355 8347 2.353505 CGCCCTCTGTAGATGGATGATG 60.354 54.545 7.31 0.00 32.39 3.07
5356 8348 2.902486 GCCCTCTGTAGATGGATGATGA 59.098 50.000 7.31 0.00 32.39 2.92
5357 8349 3.518705 GCCCTCTGTAGATGGATGATGAT 59.481 47.826 7.31 0.00 32.39 2.45
5358 8350 4.623409 GCCCTCTGTAGATGGATGATGATG 60.623 50.000 7.31 0.00 32.39 3.07
5359 8351 4.776308 CCCTCTGTAGATGGATGATGATGA 59.224 45.833 0.00 0.00 32.39 2.92
5360 8352 5.425862 CCCTCTGTAGATGGATGATGATGAT 59.574 44.000 0.00 0.00 32.39 2.45
5361 8353 6.070136 CCCTCTGTAGATGGATGATGATGATT 60.070 42.308 0.00 0.00 32.39 2.57
5362 8354 7.395617 CCTCTGTAGATGGATGATGATGATTT 58.604 38.462 0.00 0.00 0.00 2.17
5363 8355 7.883833 CCTCTGTAGATGGATGATGATGATTTT 59.116 37.037 0.00 0.00 0.00 1.82
5364 8356 8.617290 TCTGTAGATGGATGATGATGATTTTG 57.383 34.615 0.00 0.00 0.00 2.44
5365 8357 8.215736 TCTGTAGATGGATGATGATGATTTTGT 58.784 33.333 0.00 0.00 0.00 2.83
5366 8358 8.387190 TGTAGATGGATGATGATGATTTTGTC 57.613 34.615 0.00 0.00 0.00 3.18
5367 8359 6.896021 AGATGGATGATGATGATTTTGTCC 57.104 37.500 0.00 0.00 0.00 4.02
5368 8360 6.611785 AGATGGATGATGATGATTTTGTCCT 58.388 36.000 0.00 0.00 0.00 3.85
5369 8361 7.067421 AGATGGATGATGATGATTTTGTCCTT 58.933 34.615 0.00 0.00 0.00 3.36
5370 8362 8.222637 AGATGGATGATGATGATTTTGTCCTTA 58.777 33.333 0.00 0.00 0.00 2.69
5371 8363 8.951614 ATGGATGATGATGATTTTGTCCTTAT 57.048 30.769 0.00 0.00 0.00 1.73
5405 8397 9.681692 TTAGAGTTCATTTTGATGTTCATTGTG 57.318 29.630 0.00 0.00 0.00 3.33
5406 8398 7.944061 AGAGTTCATTTTGATGTTCATTGTGA 58.056 30.769 0.00 0.00 0.00 3.58
5407 8399 8.582437 AGAGTTCATTTTGATGTTCATTGTGAT 58.418 29.630 0.00 0.00 0.00 3.06
5408 8400 8.528917 AGTTCATTTTGATGTTCATTGTGATG 57.471 30.769 0.00 0.00 34.46 3.07
5409 8401 8.361889 AGTTCATTTTGATGTTCATTGTGATGA 58.638 29.630 0.00 0.00 40.46 2.92
5453 8445 9.801873 TGCATTTTCCTAATTAAGTTTAGATGC 57.198 29.630 10.45 10.45 36.83 3.91
5454 8446 8.958043 GCATTTTCCTAATTAAGTTTAGATGCG 58.042 33.333 0.00 0.00 31.63 4.73
5458 8450 9.880157 TTTCCTAATTAAGTTTAGATGCGTAGT 57.120 29.630 0.00 0.00 32.02 2.73
5459 8451 9.880157 TTCCTAATTAAGTTTAGATGCGTAGTT 57.120 29.630 0.00 0.00 32.02 2.24
5537 8529 9.979578 ATTGTGCAATTTTGTATAGAAACTTCA 57.020 25.926 0.00 0.00 0.00 3.02
5538 8530 9.979578 TTGTGCAATTTTGTATAGAAACTTCAT 57.020 25.926 0.00 0.00 0.00 2.57
5539 8531 9.979578 TGTGCAATTTTGTATAGAAACTTCATT 57.020 25.926 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.358737 CTCCACGTTGGACAGCCC 60.359 66.667 3.02 0.00 42.67 5.19
1 2 2.358737 CCTCCACGTTGGACAGCC 60.359 66.667 3.02 0.00 42.67 4.85
4 5 1.052124 AGAACCCTCCACGTTGGACA 61.052 55.000 3.02 0.00 42.67 4.02
5 6 0.108019 AAGAACCCTCCACGTTGGAC 59.892 55.000 3.02 0.00 42.67 4.02
6 7 1.719529 TAAGAACCCTCCACGTTGGA 58.280 50.000 6.57 6.57 45.98 3.53
7 8 2.554370 TTAAGAACCCTCCACGTTGG 57.446 50.000 0.00 0.00 39.43 3.77
8 9 2.747446 CCATTAAGAACCCTCCACGTTG 59.253 50.000 0.00 0.00 0.00 4.10
9 10 2.290705 CCCATTAAGAACCCTCCACGTT 60.291 50.000 0.00 0.00 0.00 3.99
10 11 1.280998 CCCATTAAGAACCCTCCACGT 59.719 52.381 0.00 0.00 0.00 4.49
11 12 1.280998 ACCCATTAAGAACCCTCCACG 59.719 52.381 0.00 0.00 0.00 4.94
12 13 2.041216 ACACCCATTAAGAACCCTCCAC 59.959 50.000 0.00 0.00 0.00 4.02
13 14 2.041081 CACACCCATTAAGAACCCTCCA 59.959 50.000 0.00 0.00 0.00 3.86
14 15 2.620627 CCACACCCATTAAGAACCCTCC 60.621 54.545 0.00 0.00 0.00 4.30
15 16 2.307686 TCCACACCCATTAAGAACCCTC 59.692 50.000 0.00 0.00 0.00 4.30
16 17 2.308866 CTCCACACCCATTAAGAACCCT 59.691 50.000 0.00 0.00 0.00 4.34
17 18 2.307686 TCTCCACACCCATTAAGAACCC 59.692 50.000 0.00 0.00 0.00 4.11
18 19 3.610911 CTCTCCACACCCATTAAGAACC 58.389 50.000 0.00 0.00 0.00 3.62
19 20 3.610911 CCTCTCCACACCCATTAAGAAC 58.389 50.000 0.00 0.00 0.00 3.01
20 21 2.576191 CCCTCTCCACACCCATTAAGAA 59.424 50.000 0.00 0.00 0.00 2.52
21 22 2.196595 CCCTCTCCACACCCATTAAGA 58.803 52.381 0.00 0.00 0.00 2.10
22 23 2.171448 CTCCCTCTCCACACCCATTAAG 59.829 54.545 0.00 0.00 0.00 1.85
23 24 2.196595 CTCCCTCTCCACACCCATTAA 58.803 52.381 0.00 0.00 0.00 1.40
24 25 1.364678 TCTCCCTCTCCACACCCATTA 59.635 52.381 0.00 0.00 0.00 1.90
25 26 0.119155 TCTCCCTCTCCACACCCATT 59.881 55.000 0.00 0.00 0.00 3.16
26 27 0.326048 CTCTCCCTCTCCACACCCAT 60.326 60.000 0.00 0.00 0.00 4.00
27 28 1.079256 CTCTCCCTCTCCACACCCA 59.921 63.158 0.00 0.00 0.00 4.51
28 29 0.973496 GTCTCTCCCTCTCCACACCC 60.973 65.000 0.00 0.00 0.00 4.61
29 30 0.973496 GGTCTCTCCCTCTCCACACC 60.973 65.000 0.00 0.00 0.00 4.16
30 31 2.585876 GGTCTCTCCCTCTCCACAC 58.414 63.158 0.00 0.00 0.00 3.82
40 41 2.760385 CAGGGGACGGGTCTCTCC 60.760 72.222 0.00 0.00 0.00 3.71
41 42 0.903454 TTTCAGGGGACGGGTCTCTC 60.903 60.000 0.00 0.00 0.00 3.20
42 43 0.473117 TTTTCAGGGGACGGGTCTCT 60.473 55.000 0.00 0.00 0.00 3.10
43 44 0.618981 ATTTTCAGGGGACGGGTCTC 59.381 55.000 0.00 0.00 0.00 3.36
44 45 0.618981 GATTTTCAGGGGACGGGTCT 59.381 55.000 0.00 0.00 0.00 3.85
45 46 3.170360 GATTTTCAGGGGACGGGTC 57.830 57.895 0.00 0.00 0.00 4.46
347 348 4.452455 CCACACCTACTTAACTTCAGCTTG 59.548 45.833 0.00 0.00 0.00 4.01
348 349 4.102681 ACCACACCTACTTAACTTCAGCTT 59.897 41.667 0.00 0.00 0.00 3.74
349 350 3.646637 ACCACACCTACTTAACTTCAGCT 59.353 43.478 0.00 0.00 0.00 4.24
350 351 4.004196 ACCACACCTACTTAACTTCAGC 57.996 45.455 0.00 0.00 0.00 4.26
351 352 9.530633 GATAATACCACACCTACTTAACTTCAG 57.469 37.037 0.00 0.00 0.00 3.02
352 353 8.192774 CGATAATACCACACCTACTTAACTTCA 58.807 37.037 0.00 0.00 0.00 3.02
353 354 7.650903 CCGATAATACCACACCTACTTAACTTC 59.349 40.741 0.00 0.00 0.00 3.01
360 361 5.945144 AAACCGATAATACCACACCTACT 57.055 39.130 0.00 0.00 0.00 2.57
369 370 4.212004 GGAAGGCGTAAAACCGATAATACC 59.788 45.833 0.00 0.00 0.00 2.73
386 387 5.936956 CACCTCATATTCTAGAATGGAAGGC 59.063 44.000 25.22 0.00 39.58 4.35
389 390 8.324191 AGAACACCTCATATTCTAGAATGGAA 57.676 34.615 25.22 8.41 40.84 3.53
425 426 8.810652 TGTTAAACTTTATGAAATGTGGCTTC 57.189 30.769 0.00 0.00 0.00 3.86
496 498 8.516811 AGATCCGTCGTGACATATATTTTAAC 57.483 34.615 0.41 0.00 0.00 2.01
512 514 7.148950 GCTGAATTAGTAACATTAGATCCGTCG 60.149 40.741 0.00 0.00 0.00 5.12
515 517 6.641314 ACGCTGAATTAGTAACATTAGATCCG 59.359 38.462 0.00 0.00 0.00 4.18
520 522 9.297586 TCTACAACGCTGAATTAGTAACATTAG 57.702 33.333 0.00 0.00 0.00 1.73
526 528 8.195436 AGCTTATCTACAACGCTGAATTAGTAA 58.805 33.333 0.00 0.00 0.00 2.24
530 532 7.010183 GTCAAGCTTATCTACAACGCTGAATTA 59.990 37.037 0.00 0.00 0.00 1.40
583 585 4.689612 ACCTACTTGCTCTGTTCTCAAA 57.310 40.909 0.00 0.00 0.00 2.69
586 588 5.394224 AAGTACCTACTTGCTCTGTTCTC 57.606 43.478 0.00 0.00 44.30 2.87
593 595 8.950208 AATCTGATTTAAGTACCTACTTGCTC 57.050 34.615 7.81 3.39 45.44 4.26
654 656 9.494055 CCCCCTCTGTCTTATAATATAAGATGA 57.506 37.037 21.43 19.66 36.16 2.92
658 660 9.771140 AGTACCCCCTCTGTCTTATAATATAAG 57.229 37.037 12.58 12.58 0.00 1.73
660 662 9.136828 AGAGTACCCCCTCTGTCTTATAATATA 57.863 37.037 0.00 0.00 40.30 0.86
661 663 8.013806 AGAGTACCCCCTCTGTCTTATAATAT 57.986 38.462 0.00 0.00 40.30 1.28
662 664 7.417811 AGAGTACCCCCTCTGTCTTATAATA 57.582 40.000 0.00 0.00 40.30 0.98
663 665 6.296435 AGAGTACCCCCTCTGTCTTATAAT 57.704 41.667 0.00 0.00 40.30 1.28
665 667 5.745988 AAGAGTACCCCCTCTGTCTTATA 57.254 43.478 0.00 0.00 40.93 0.98
668 670 3.277416 AAAGAGTACCCCCTCTGTCTT 57.723 47.619 0.00 0.00 40.93 3.01
670 672 2.904434 TCAAAAGAGTACCCCCTCTGTC 59.096 50.000 0.00 0.00 40.93 3.51
673 675 4.240323 TCTTTCAAAAGAGTACCCCCTCT 58.760 43.478 1.06 0.00 43.65 3.69
679 681 9.880064 GTACTCAATTTCTTTCAAAAGAGTACC 57.120 33.333 19.80 10.63 45.01 3.34
730 732 7.584123 CAGTCAAAGTTCTGTTTTCGACAATAG 59.416 37.037 1.95 1.95 37.93 1.73
731 733 7.279090 TCAGTCAAAGTTCTGTTTTCGACAATA 59.721 33.333 0.00 0.00 37.93 1.90
763 767 4.539870 CGTACGACACAGGAAAGAAACTA 58.460 43.478 10.44 0.00 0.00 2.24
769 773 2.442084 GGCGTACGACACAGGAAAG 58.558 57.895 21.65 0.00 0.00 2.62
793 817 1.238439 CACCATTGCTTCCTTCGTGT 58.762 50.000 0.00 0.00 0.00 4.49
797 821 1.893062 GGCCACCATTGCTTCCTTC 59.107 57.895 0.00 0.00 0.00 3.46
844 872 2.547218 GGAGATAGAGAGACGACGAGCT 60.547 54.545 0.00 0.00 0.00 4.09
911 950 4.521075 CGATGATCGGCAGTGGTT 57.479 55.556 7.00 0.00 36.00 3.67
922 961 2.507944 GTGGAGGCTGCCGATGAT 59.492 61.111 13.96 0.00 0.00 2.45
1076 1115 1.300931 GTGGCGAGCACAGAGTCAA 60.301 57.895 0.00 0.00 0.00 3.18
1173 1213 1.146930 GGCCATGATCTTGCGGAGA 59.853 57.895 0.00 0.00 39.13 3.71
1314 1387 0.389817 CAATGGAGAAGACGGTGCGA 60.390 55.000 0.00 0.00 0.00 5.10
1332 1405 1.666011 GTCCAGGCTCGTGAAGTCA 59.334 57.895 0.00 0.00 29.30 3.41
1336 1409 1.532604 ATGTCGTCCAGGCTCGTGAA 61.533 55.000 0.00 0.00 0.00 3.18
1347 1420 0.037326 TGGAACTGCTCATGTCGTCC 60.037 55.000 0.00 0.00 0.00 4.79
1368 1441 2.232452 CGTGATCACCTCTTGGAACTCT 59.768 50.000 20.03 0.00 37.04 3.24
1507 1580 2.126071 CACCTCGGCGTCGAACAT 60.126 61.111 15.23 0.00 45.47 2.71
1567 1640 0.892358 AGCACGTGGAGGAAGTCGTA 60.892 55.000 18.88 0.00 35.13 3.43
1579 1652 2.733671 CCACATCGAGCAGCACGTG 61.734 63.158 12.28 12.28 0.00 4.49
1599 1672 4.393155 TTGCCATCCTCACGCGCT 62.393 61.111 5.73 0.00 0.00 5.92
1704 1814 3.123050 CCCTTTTTCCTCGCAAAAACAG 58.877 45.455 0.00 0.00 32.88 3.16
1706 1816 3.446310 TCCCTTTTTCCTCGCAAAAAC 57.554 42.857 0.00 0.00 32.88 2.43
1723 1834 6.478512 TGCCACTTAATTAATGGATTTCCC 57.521 37.500 21.29 9.70 35.33 3.97
1730 1841 4.099881 ACATGGCTGCCACTTAATTAATGG 59.900 41.667 25.99 16.31 35.80 3.16
1792 1903 3.716006 CACTGCGGTGTGGCTTCG 61.716 66.667 17.96 0.00 38.54 3.79
1811 1922 8.672823 AGTTAACTTTGGTCGAATAAAGAAGT 57.327 30.769 22.30 11.48 37.35 3.01
1833 1944 6.673154 AACGCTGTTAGTCACTTTTTAGTT 57.327 33.333 0.00 0.00 0.00 2.24
1834 1945 6.673154 AAACGCTGTTAGTCACTTTTTAGT 57.327 33.333 0.00 0.00 0.00 2.24
1842 1953 4.026407 GTGAACAAAACGCTGTTAGTCAC 58.974 43.478 0.00 0.84 39.63 3.67
1875 1986 7.067008 CGGGAACATGGTGAATTCTTAGTTAAT 59.933 37.037 7.05 0.00 0.00 1.40
1965 2076 4.153475 TGCGCAGAAGTGGTAAAACTAATC 59.847 41.667 5.66 0.00 0.00 1.75
2093 2204 0.306533 TTTTTCGTCTTGCCGTGAGC 59.693 50.000 0.00 0.00 44.14 4.26
2183 2294 2.382746 GCTGCGCTCAACATCGACA 61.383 57.895 9.73 0.00 0.00 4.35
2234 2345 1.210538 AGAGCATGAGAGGCCATCAA 58.789 50.000 13.98 0.00 0.00 2.57
2248 2359 7.066163 CAGGAAATTGTTATCACATGTAGAGCA 59.934 37.037 0.00 0.00 31.06 4.26
2387 2498 4.224274 ACAAACGACCACCGCCGA 62.224 61.111 0.00 0.00 43.32 5.54
2487 2598 3.825143 AAGTGGCTTTTTCATGTGCTT 57.175 38.095 0.00 0.00 0.00 3.91
2507 2618 1.902918 GTCATGCACACTGGGCCAA 60.903 57.895 8.04 0.00 0.00 4.52
2583 2694 2.430465 GCTCTTTGCAGATGTCCTCAA 58.570 47.619 0.00 0.00 42.31 3.02
2879 2990 1.005215 AGGATGTCCTTGCTTGGGAAG 59.995 52.381 0.00 0.00 46.09 3.46
3048 3159 4.966787 GGTGGCTCCGGCAAACCA 62.967 66.667 0.00 0.00 42.60 3.67
3057 3168 3.735037 GATCCCGAACGGTGGCTCC 62.735 68.421 12.23 0.00 0.00 4.70
3134 3245 0.837691 TGGGCTGGAGCTTCTGAAGA 60.838 55.000 21.06 0.00 41.70 2.87
3204 3315 4.453480 TTTTCCATCTGGTCTCCTTGTT 57.547 40.909 0.00 0.00 36.34 2.83
3305 3416 1.940613 GTGAGTTCCGCTTGTTCAACT 59.059 47.619 0.00 0.00 0.00 3.16
3409 3520 0.034337 GTGCGTAACTTCTGGTGGGA 59.966 55.000 0.00 0.00 0.00 4.37
3555 3695 0.548031 CTTTGATCCCCAGCAGGCTA 59.452 55.000 0.00 0.00 0.00 3.93
3563 3703 0.971959 GCCATGTGCTTTGATCCCCA 60.972 55.000 0.00 0.00 36.87 4.96
3610 3758 1.234821 TCTGCCACCATTTGTTCGAC 58.765 50.000 0.00 0.00 0.00 4.20
3613 3761 1.404583 GCCATCTGCCACCATTTGTTC 60.405 52.381 0.00 0.00 0.00 3.18
3767 6706 5.243981 TGGATGCCACCACAATTATTTTTG 58.756 37.500 0.00 0.00 34.77 2.44
3877 6818 3.801114 TCCCATGACGACACTATTCTG 57.199 47.619 0.00 0.00 0.00 3.02
3937 6878 3.997319 ACAACGACATGTCATGATTCG 57.003 42.857 26.67 19.32 35.62 3.34
3939 6880 7.376435 TGAATAACAACGACATGTCATGATT 57.624 32.000 26.67 18.88 31.81 2.57
3945 6886 5.790003 CACACATGAATAACAACGACATGTC 59.210 40.000 16.21 16.21 45.96 3.06
3949 6890 4.811557 TGTCACACATGAATAACAACGACA 59.188 37.500 0.00 0.00 36.31 4.35
3953 6894 7.915397 AGTTCTTTGTCACACATGAATAACAAC 59.085 33.333 0.00 0.00 36.31 3.32
4073 7028 4.024218 TGGAAATTTTGAAATGCGGCAAAG 60.024 37.500 6.82 0.00 35.64 2.77
4077 7032 3.066380 AGTGGAAATTTTGAAATGCGGC 58.934 40.909 0.00 0.00 0.00 6.53
4078 7033 5.291614 CCATAGTGGAAATTTTGAAATGCGG 59.708 40.000 0.00 0.00 40.96 5.69
4080 7035 5.876460 AGCCATAGTGGAAATTTTGAAATGC 59.124 36.000 0.00 0.00 40.96 3.56
4081 7036 7.325694 AGAGCCATAGTGGAAATTTTGAAATG 58.674 34.615 0.00 0.00 40.96 2.32
4098 7055 4.837298 AGTGCAATCTATCTGAGAGCCATA 59.163 41.667 0.00 0.00 37.70 2.74
4101 7058 3.749665 AGTGCAATCTATCTGAGAGCC 57.250 47.619 0.00 0.00 37.70 4.70
4109 7066 3.496130 CCGATGGTGAAGTGCAATCTATC 59.504 47.826 0.00 0.00 0.00 2.08
4134 7091 5.299279 TCTTGATCCAATATTTCCTTTCGCC 59.701 40.000 0.00 0.00 0.00 5.54
4179 7148 9.256477 CATGAGATTTGGTATTCATTTCATTGG 57.744 33.333 0.00 0.00 0.00 3.16
4225 7197 5.220912 CGCGGATGGATCATATTTGCAATAT 60.221 40.000 0.00 0.00 0.00 1.28
4233 7205 4.649674 ACTATACCGCGGATGGATCATATT 59.350 41.667 35.90 6.98 0.00 1.28
4241 7213 1.533338 GCGATACTATACCGCGGATGG 60.533 57.143 35.90 23.42 39.54 3.51
4247 7219 8.469821 AATTGCACATTGCGATACTATACCGC 62.470 42.308 1.25 0.00 46.25 5.68
4248 7220 3.972706 GCACATTGCGATACTATACCG 57.027 47.619 0.00 0.00 31.71 4.02
4249 7221 6.073276 TGAATTGCACATTGCGATACTATACC 60.073 38.462 1.25 0.00 46.25 2.73
4250 7222 6.887368 TGAATTGCACATTGCGATACTATAC 58.113 36.000 1.25 0.00 46.25 1.47
4320 7297 7.303634 ACTAAACAAGTGTCACACAAAGTAG 57.696 36.000 11.40 7.32 36.93 2.57
4398 7385 4.089923 GCAAACAAATCCTAACATGCGAAC 59.910 41.667 0.00 0.00 0.00 3.95
4401 7388 3.609373 CAGCAAACAAATCCTAACATGCG 59.391 43.478 0.00 0.00 37.61 4.73
4511 7498 0.388391 GCCGCTAATTTGTGCAAGCA 60.388 50.000 6.62 0.00 34.60 3.91
4526 7513 2.226437 TCAATGTTTCTTCTTGAGCCGC 59.774 45.455 0.00 0.00 0.00 6.53
4553 7540 6.194235 AGGTAGGGCAATCAAACAATATCAA 58.806 36.000 0.00 0.00 0.00 2.57
4564 7551 0.255890 GCTTGGAGGTAGGGCAATCA 59.744 55.000 0.00 0.00 0.00 2.57
4575 7562 4.633565 GTCTCTTTTATGACAGCTTGGAGG 59.366 45.833 0.00 0.00 33.75 4.30
4765 7752 1.523758 ATCGCTGAACACAAGAACCC 58.476 50.000 0.00 0.00 0.00 4.11
4774 7761 3.007506 TCCCTAAAGTCAATCGCTGAACA 59.992 43.478 0.00 0.00 35.22 3.18
4796 7783 7.364408 CCAATGGAAGGAGATCAAAATTCACAT 60.364 37.037 0.00 0.00 0.00 3.21
4801 7788 5.781818 ACACCAATGGAAGGAGATCAAAATT 59.218 36.000 6.16 0.00 0.00 1.82
4809 7796 1.075374 CCCAACACCAATGGAAGGAGA 59.925 52.381 6.16 0.00 40.56 3.71
4825 7813 4.467084 GGCAGATCCGACGCCCAA 62.467 66.667 2.42 0.00 40.07 4.12
4861 7849 0.397941 CATCCCGTGCACCATCCTAT 59.602 55.000 12.15 0.00 0.00 2.57
4874 7862 1.261480 ATAGTGGAGCTAGCATCCCG 58.739 55.000 18.83 0.00 35.86 5.14
4876 7864 6.467677 TGATTTAATAGTGGAGCTAGCATCC 58.532 40.000 18.83 19.69 37.35 3.51
4883 7871 9.167311 CACTTAAACTGATTTAATAGTGGAGCT 57.833 33.333 0.00 0.00 39.10 4.09
4991 7979 5.126869 TCAAATGGGTGTTGCCATTATACAG 59.873 40.000 0.00 0.00 39.65 2.74
4997 7985 1.002315 GCTCAAATGGGTGTTGCCATT 59.998 47.619 0.00 0.00 39.65 3.16
5159 8151 1.600023 TGCCCCGTTTTCTACTTGTG 58.400 50.000 0.00 0.00 0.00 3.33
5160 8152 2.579410 ATGCCCCGTTTTCTACTTGT 57.421 45.000 0.00 0.00 0.00 3.16
5164 8156 2.014335 ACGTATGCCCCGTTTTCTAC 57.986 50.000 0.00 0.00 34.28 2.59
5174 8166 4.476752 TGGCCCGAACGTATGCCC 62.477 66.667 0.00 1.23 43.35 5.36
5175 8167 2.660258 ATCTGGCCCGAACGTATGCC 62.660 60.000 0.00 9.79 44.27 4.40
5176 8168 0.032952 TATCTGGCCCGAACGTATGC 59.967 55.000 0.00 0.00 0.00 3.14
5177 8169 2.404215 CTTATCTGGCCCGAACGTATG 58.596 52.381 0.00 0.00 0.00 2.39
5178 8170 1.270147 GCTTATCTGGCCCGAACGTAT 60.270 52.381 0.00 0.00 0.00 3.06
5179 8171 0.103572 GCTTATCTGGCCCGAACGTA 59.896 55.000 0.00 0.00 0.00 3.57
5180 8172 1.153429 GCTTATCTGGCCCGAACGT 60.153 57.895 0.00 0.00 0.00 3.99
5181 8173 1.887707 GGCTTATCTGGCCCGAACG 60.888 63.158 0.00 0.00 43.49 3.95
5182 8174 4.142780 GGCTTATCTGGCCCGAAC 57.857 61.111 0.00 0.00 43.49 3.95
5188 8180 1.539157 GGCTAATGGGCTTATCTGGC 58.461 55.000 0.00 0.00 37.53 4.85
5189 8181 1.707427 AGGGCTAATGGGCTTATCTGG 59.293 52.381 0.00 0.00 40.65 3.86
5190 8182 2.613977 CGAGGGCTAATGGGCTTATCTG 60.614 54.545 0.00 0.00 40.65 2.90
5191 8183 1.625818 CGAGGGCTAATGGGCTTATCT 59.374 52.381 0.00 0.00 40.65 1.98
5192 8184 1.348036 ACGAGGGCTAATGGGCTTATC 59.652 52.381 0.00 0.00 40.65 1.75
5193 8185 1.348036 GACGAGGGCTAATGGGCTTAT 59.652 52.381 0.00 0.00 40.65 1.73
5194 8186 0.756903 GACGAGGGCTAATGGGCTTA 59.243 55.000 0.00 0.00 40.65 3.09
5195 8187 1.527370 GACGAGGGCTAATGGGCTT 59.473 57.895 0.00 0.00 40.65 4.35
5196 8188 2.797278 CGACGAGGGCTAATGGGCT 61.797 63.158 0.00 0.00 40.65 5.19
5197 8189 2.280186 CGACGAGGGCTAATGGGC 60.280 66.667 0.00 0.00 40.05 5.36
5198 8190 2.280186 GCGACGAGGGCTAATGGG 60.280 66.667 0.00 0.00 0.00 4.00
5199 8191 2.280186 GGCGACGAGGGCTAATGG 60.280 66.667 0.00 0.00 0.00 3.16
5229 8221 4.459089 GACGAGGAGGCAGGGCAC 62.459 72.222 0.00 0.00 0.00 5.01
5232 8224 3.827898 GTCGACGAGGAGGCAGGG 61.828 72.222 0.00 0.00 0.00 4.45
5233 8225 4.180946 CGTCGACGAGGAGGCAGG 62.181 72.222 33.35 0.00 43.02 4.85
5234 8226 3.384014 GACGTCGACGAGGAGGCAG 62.384 68.421 41.52 12.23 43.02 4.85
5235 8227 3.429141 GACGTCGACGAGGAGGCA 61.429 66.667 41.52 0.00 43.02 4.75
5236 8228 4.517703 CGACGTCGACGAGGAGGC 62.518 72.222 41.52 21.11 43.02 4.70
5237 8229 4.517703 GCGACGTCGACGAGGAGG 62.518 72.222 41.52 24.49 43.02 4.30
5238 8230 4.517703 GGCGACGTCGACGAGGAG 62.518 72.222 41.52 27.40 43.02 3.69
5276 8268 4.463879 CTCACTCTGCTGGGGGCG 62.464 72.222 0.00 0.00 45.43 6.13
5277 8269 4.792804 GCTCACTCTGCTGGGGGC 62.793 72.222 0.00 0.00 42.22 5.80
5278 8270 3.007920 AGCTCACTCTGCTGGGGG 61.008 66.667 0.00 0.00 39.56 5.40
5279 8271 2.583520 GAGCTCACTCTGCTGGGG 59.416 66.667 9.40 0.00 41.30 4.96
5280 8272 2.183811 CGAGCTCACTCTGCTGGG 59.816 66.667 15.40 0.00 41.30 4.45
5281 8273 2.508887 GCGAGCTCACTCTGCTGG 60.509 66.667 15.40 0.00 41.30 4.85
5282 8274 2.879933 CGCGAGCTCACTCTGCTG 60.880 66.667 15.40 1.78 41.30 4.41
5294 8286 1.065928 CTTACTAGGGTGGCGCGAG 59.934 63.158 12.10 0.00 0.00 5.03
5295 8287 3.072486 GCTTACTAGGGTGGCGCGA 62.072 63.158 12.10 0.00 0.00 5.87
5296 8288 2.585247 GCTTACTAGGGTGGCGCG 60.585 66.667 0.00 0.00 0.00 6.86
5297 8289 1.227292 GAGCTTACTAGGGTGGCGC 60.227 63.158 0.00 0.00 33.33 6.53
5298 8290 0.753262 ATGAGCTTACTAGGGTGGCG 59.247 55.000 0.00 0.00 33.33 5.69
5299 8291 2.436173 AGAATGAGCTTACTAGGGTGGC 59.564 50.000 0.00 0.00 0.00 5.01
5300 8292 3.070302 GGAGAATGAGCTTACTAGGGTGG 59.930 52.174 0.00 0.00 0.00 4.61
5301 8293 3.964031 AGGAGAATGAGCTTACTAGGGTG 59.036 47.826 0.00 0.00 0.00 4.61
5302 8294 4.219919 GAGGAGAATGAGCTTACTAGGGT 58.780 47.826 0.00 0.00 0.00 4.34
5303 8295 3.254657 CGAGGAGAATGAGCTTACTAGGG 59.745 52.174 0.00 0.00 0.00 3.53
5304 8296 3.886505 ACGAGGAGAATGAGCTTACTAGG 59.113 47.826 0.00 0.00 0.00 3.02
5305 8297 4.319190 CGACGAGGAGAATGAGCTTACTAG 60.319 50.000 0.00 0.00 0.00 2.57
5306 8298 3.560481 CGACGAGGAGAATGAGCTTACTA 59.440 47.826 0.00 0.00 0.00 1.82
5307 8299 2.356382 CGACGAGGAGAATGAGCTTACT 59.644 50.000 0.00 0.00 0.00 2.24
5308 8300 2.722071 CGACGAGGAGAATGAGCTTAC 58.278 52.381 0.00 0.00 0.00 2.34
5309 8301 1.065701 GCGACGAGGAGAATGAGCTTA 59.934 52.381 0.00 0.00 0.00 3.09
5310 8302 0.179124 GCGACGAGGAGAATGAGCTT 60.179 55.000 0.00 0.00 0.00 3.74
5311 8303 1.435515 GCGACGAGGAGAATGAGCT 59.564 57.895 0.00 0.00 0.00 4.09
5312 8304 1.590259 GGCGACGAGGAGAATGAGC 60.590 63.158 0.00 0.00 0.00 4.26
5313 8305 4.719997 GGCGACGAGGAGAATGAG 57.280 61.111 0.00 0.00 0.00 2.90
5330 8322 3.227276 ATCTACAGAGGGCGGCCG 61.227 66.667 24.05 24.05 0.00 6.13
5331 8323 2.423446 CATCTACAGAGGGCGGCC 59.577 66.667 22.67 22.67 0.00 6.13
5332 8324 1.476007 ATCCATCTACAGAGGGCGGC 61.476 60.000 0.00 0.00 45.01 6.53
5333 8325 0.319728 CATCCATCTACAGAGGGCGG 59.680 60.000 5.04 0.00 45.01 6.13
5334 8326 1.332195 TCATCCATCTACAGAGGGCG 58.668 55.000 5.04 0.00 45.01 6.13
5335 8327 2.902486 TCATCATCCATCTACAGAGGGC 59.098 50.000 5.04 0.00 45.01 5.19
5336 8328 4.776308 TCATCATCATCCATCTACAGAGGG 59.224 45.833 3.49 3.49 46.62 4.30
5337 8329 5.997384 TCATCATCATCCATCTACAGAGG 57.003 43.478 0.00 0.00 0.00 3.69
5338 8330 8.722394 CAAAATCATCATCATCCATCTACAGAG 58.278 37.037 0.00 0.00 0.00 3.35
5339 8331 8.215736 ACAAAATCATCATCATCCATCTACAGA 58.784 33.333 0.00 0.00 0.00 3.41
5340 8332 8.392372 ACAAAATCATCATCATCCATCTACAG 57.608 34.615 0.00 0.00 0.00 2.74
5341 8333 7.446319 GGACAAAATCATCATCATCCATCTACA 59.554 37.037 0.00 0.00 0.00 2.74
5342 8334 7.664731 AGGACAAAATCATCATCATCCATCTAC 59.335 37.037 0.00 0.00 0.00 2.59
5343 8335 7.752638 AGGACAAAATCATCATCATCCATCTA 58.247 34.615 0.00 0.00 0.00 1.98
5344 8336 6.611785 AGGACAAAATCATCATCATCCATCT 58.388 36.000 0.00 0.00 0.00 2.90
5345 8337 6.896021 AGGACAAAATCATCATCATCCATC 57.104 37.500 0.00 0.00 0.00 3.51
5346 8338 8.951614 ATAAGGACAAAATCATCATCATCCAT 57.048 30.769 0.00 0.00 0.00 3.41
5379 8371 9.681692 CACAATGAACATCAAAATGAACTCTAA 57.318 29.630 0.00 0.00 36.67 2.10
5380 8372 9.065798 TCACAATGAACATCAAAATGAACTCTA 57.934 29.630 0.00 0.00 36.67 2.43
5381 8373 7.944061 TCACAATGAACATCAAAATGAACTCT 58.056 30.769 0.00 0.00 36.67 3.24
5382 8374 8.644619 CATCACAATGAACATCAAAATGAACTC 58.355 33.333 0.00 0.00 34.41 3.01
5383 8375 8.361889 TCATCACAATGAACATCAAAATGAACT 58.638 29.630 0.00 0.00 38.97 3.01
5384 8376 8.523523 TCATCACAATGAACATCAAAATGAAC 57.476 30.769 0.00 0.00 38.97 3.18
5427 8419 9.801873 GCATCTAAACTTAATTAGGAAAATGCA 57.198 29.630 0.98 0.00 38.26 3.96
5428 8420 8.958043 CGCATCTAAACTTAATTAGGAAAATGC 58.042 33.333 0.98 7.90 36.74 3.56
5432 8424 9.880157 ACTACGCATCTAAACTTAATTAGGAAA 57.120 29.630 0.98 0.00 34.36 3.13
5433 8425 9.880157 AACTACGCATCTAAACTTAATTAGGAA 57.120 29.630 0.98 0.00 34.36 3.36
5511 8503 9.979578 TGAAGTTTCTATACAAAATTGCACAAT 57.020 25.926 0.00 0.00 0.00 2.71
5512 8504 9.979578 ATGAAGTTTCTATACAAAATTGCACAA 57.020 25.926 0.00 0.00 0.00 3.33
5513 8505 9.979578 AATGAAGTTTCTATACAAAATTGCACA 57.020 25.926 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.