Multiple sequence alignment - TraesCS7D01G415600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G415600 chr7D 100.000 6864 0 0 1 6864 534474053 534467190 0.000000e+00 12676.0
1 TraesCS7D01G415600 chr7D 93.954 1439 82 4 4600 6034 534371105 534369668 0.000000e+00 2170.0
2 TraesCS7D01G415600 chr7D 97.527 849 20 1 2257 3105 33505640 33504793 0.000000e+00 1450.0
3 TraesCS7D01G415600 chr7D 82.609 1334 179 34 4937 6235 534620949 534619634 0.000000e+00 1129.0
4 TraesCS7D01G415600 chr7D 83.189 1154 156 24 4857 5985 534521014 534519874 0.000000e+00 1022.0
5 TraesCS7D01G415600 chr7D 84.962 399 53 4 6186 6582 534369665 534369272 1.390000e-106 398.0
6 TraesCS7D01G415600 chr7D 86.944 337 27 7 3101 3422 534371433 534371099 5.060000e-96 363.0
7 TraesCS7D01G415600 chr7D 85.560 277 31 8 1985 2258 534371685 534371415 1.460000e-71 281.0
8 TraesCS7D01G415600 chr7D 78.778 311 31 11 202 492 534525372 534525077 7.080000e-40 176.0
9 TraesCS7D01G415600 chr7D 97.222 36 1 0 318 353 534625253 534625218 2.070000e-05 62.1
10 TraesCS7D01G415600 chr2D 96.218 2274 70 10 4600 6864 623913355 623915621 0.000000e+00 3709.0
11 TraesCS7D01G415600 chr2D 92.113 1065 69 8 893 1950 623910758 623911814 0.000000e+00 1487.0
12 TraesCS7D01G415600 chr2D 91.438 946 70 9 973 1912 623895243 623896183 0.000000e+00 1288.0
13 TraesCS7D01G415600 chr2D 88.043 920 100 7 991 1901 623958511 623957593 0.000000e+00 1081.0
14 TraesCS7D01G415600 chr2D 85.837 932 108 13 5063 5985 623896427 623897343 0.000000e+00 968.0
15 TraesCS7D01G415600 chr2D 88.424 311 19 6 3124 3419 623913050 623913358 6.550000e-95 359.0
16 TraesCS7D01G415600 chr2D 85.669 314 15 13 1947 2258 623911875 623912160 3.110000e-78 303.0
17 TraesCS7D01G415600 chr2D 93.478 46 3 0 1961 2006 617510920 617510965 1.240000e-07 69.4
18 TraesCS7D01G415600 chr2B 87.257 1797 140 47 202 1950 765579402 765581157 0.000000e+00 1967.0
19 TraesCS7D01G415600 chr2B 89.815 1404 133 8 4600 6001 765581812 765583207 0.000000e+00 1792.0
20 TraesCS7D01G415600 chr2B 90.806 968 78 9 955 1915 765572155 765573118 0.000000e+00 1284.0
21 TraesCS7D01G415600 chr2B 87.789 909 107 2 997 1902 753829994 753829087 0.000000e+00 1061.0
22 TraesCS7D01G415600 chr2B 86.683 398 48 2 6186 6582 765583260 765583653 2.940000e-118 436.0
23 TraesCS7D01G415600 chr2B 85.220 318 38 5 3101 3418 765581506 765581814 1.110000e-82 318.0
24 TraesCS7D01G415600 chr2B 80.464 302 36 15 1966 2251 765581223 765581517 6.980000e-50 209.0
25 TraesCS7D01G415600 chr2B 97.895 95 2 0 1 95 526847904 526847998 1.530000e-36 165.0
26 TraesCS7D01G415600 chr2B 93.478 46 3 0 1961 2006 753829015 753828970 1.240000e-07 69.4
27 TraesCS7D01G415600 chr2B 95.238 42 2 0 1961 2002 753748985 753749026 4.440000e-07 67.6
28 TraesCS7D01G415600 chr2A 89.537 1405 133 8 4600 6001 755114073 755115466 0.000000e+00 1768.0
29 TraesCS7D01G415600 chr2A 83.168 1414 182 37 4857 6235 755087282 755088674 0.000000e+00 1242.0
30 TraesCS7D01G415600 chr2A 89.760 957 87 9 956 1903 755251720 755250766 0.000000e+00 1214.0
31 TraesCS7D01G415600 chr2A 87.610 912 105 5 996 1902 748078214 748079122 0.000000e+00 1051.0
32 TraesCS7D01G415600 chr2A 86.957 920 110 5 991 1901 755335689 755336607 0.000000e+00 1026.0
33 TraesCS7D01G415600 chr2A 83.836 1027 150 13 4978 5996 755247698 755246680 0.000000e+00 963.0
34 TraesCS7D01G415600 chr2A 87.822 583 61 7 1455 2033 755086151 755086727 0.000000e+00 675.0
35 TraesCS7D01G415600 chr2A 85.714 518 53 8 362 870 755108164 755108669 1.700000e-145 527.0
36 TraesCS7D01G415600 chr2A 87.342 316 20 11 1947 2251 755113310 755113616 1.830000e-90 344.0
37 TraesCS7D01G415600 chr2A 86.689 293 34 4 6186 6475 755115519 755115809 3.090000e-83 320.0
38 TraesCS7D01G415600 chr2A 90.351 114 10 1 224 336 755092039 755092152 1.540000e-31 148.0
39 TraesCS7D01G415600 chr4D 98.233 849 15 0 2257 3105 313596957 313597805 0.000000e+00 1485.0
40 TraesCS7D01G415600 chr5A 98.565 836 12 0 2257 3092 483275793 483276628 0.000000e+00 1478.0
41 TraesCS7D01G415600 chr5A 81.548 168 25 6 4315 4479 697859530 697859694 4.320000e-27 134.0
42 TraesCS7D01G415600 chr1D 97.897 856 15 3 2257 3112 247479612 247478760 0.000000e+00 1478.0
43 TraesCS7D01G415600 chr1A 97.762 849 19 0 2257 3105 377648757 377649605 0.000000e+00 1463.0
44 TraesCS7D01G415600 chr1B 97.754 846 19 0 2257 3102 574237326 574238171 0.000000e+00 1458.0
45 TraesCS7D01G415600 chr1B 96.875 96 3 0 1 96 438442738 438442833 1.980000e-35 161.0
46 TraesCS7D01G415600 chr1B 96.875 96 3 0 1 96 480590721 480590626 1.980000e-35 161.0
47 TraesCS7D01G415600 chr3D 97.642 848 20 0 2258 3105 275108722 275109569 0.000000e+00 1456.0
48 TraesCS7D01G415600 chr4B 97.857 840 18 0 2257 3096 19075039 19074200 0.000000e+00 1452.0
49 TraesCS7D01G415600 chr6D 97.409 849 22 0 2257 3105 160205189 160204341 0.000000e+00 1447.0
50 TraesCS7D01G415600 chr6D 87.430 1066 107 25 3430 4479 83277560 83276506 0.000000e+00 1201.0
51 TraesCS7D01G415600 chrUn 90.132 1064 86 12 3431 4479 23309840 23308781 0.000000e+00 1365.0
52 TraesCS7D01G415600 chrUn 89.489 1056 99 10 3432 4479 96036146 96037197 0.000000e+00 1325.0
53 TraesCS7D01G415600 chr7A 89.593 1057 88 15 3437 4479 5013094 5014142 0.000000e+00 1323.0
54 TraesCS7D01G415600 chr7A 88.346 1064 103 20 3432 4479 670886015 670884957 0.000000e+00 1258.0
55 TraesCS7D01G415600 chr7A 90.960 885 63 11 3438 4308 736020514 736019633 0.000000e+00 1175.0
56 TraesCS7D01G415600 chr6B 88.931 1066 95 16 3433 4479 3822783 3821722 0.000000e+00 1293.0
57 TraesCS7D01G415600 chr6B 97.872 94 2 0 2 95 703748582 703748489 5.510000e-36 163.0
58 TraesCS7D01G415600 chr6B 96.875 96 3 0 1 96 596862307 596862212 1.980000e-35 161.0
59 TraesCS7D01G415600 chr6A 87.688 1064 111 19 3432 4479 277285178 277286237 0.000000e+00 1221.0
60 TraesCS7D01G415600 chr3A 87.594 1064 110 21 3432 4479 13955034 13956091 0.000000e+00 1214.0
61 TraesCS7D01G415600 chr3A 89.260 959 85 17 3432 4376 713847551 713848505 0.000000e+00 1184.0
62 TraesCS7D01G415600 chr7B 96.875 96 3 0 1 96 653432183 653432088 1.980000e-35 161.0
63 TraesCS7D01G415600 chr7B 94.118 102 6 0 1 102 453929841 453929942 9.220000e-34 156.0
64 TraesCS7D01G415600 chr7B 90.517 116 8 2 1 114 511934734 511934848 4.290000e-32 150.0
65 TraesCS7D01G415600 chr5B 96.875 96 3 0 1 96 620346924 620346829 1.980000e-35 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G415600 chr7D 534467190 534474053 6863 True 12676.000000 12676 100.000000 1 6864 1 chr7D.!!$R2 6863
1 TraesCS7D01G415600 chr7D 33504793 33505640 847 True 1450.000000 1450 97.527000 2257 3105 1 chr7D.!!$R1 848
2 TraesCS7D01G415600 chr7D 534619634 534620949 1315 True 1129.000000 1129 82.609000 4937 6235 1 chr7D.!!$R5 1298
3 TraesCS7D01G415600 chr7D 534519874 534521014 1140 True 1022.000000 1022 83.189000 4857 5985 1 chr7D.!!$R3 1128
4 TraesCS7D01G415600 chr7D 534369272 534371685 2413 True 803.000000 2170 87.855000 1985 6582 4 chr7D.!!$R7 4597
5 TraesCS7D01G415600 chr2D 623910758 623915621 4863 False 1464.500000 3709 90.606000 893 6864 4 chr2D.!!$F3 5971
6 TraesCS7D01G415600 chr2D 623895243 623897343 2100 False 1128.000000 1288 88.637500 973 5985 2 chr2D.!!$F2 5012
7 TraesCS7D01G415600 chr2D 623957593 623958511 918 True 1081.000000 1081 88.043000 991 1901 1 chr2D.!!$R1 910
8 TraesCS7D01G415600 chr2B 765572155 765573118 963 False 1284.000000 1284 90.806000 955 1915 1 chr2B.!!$F3 960
9 TraesCS7D01G415600 chr2B 765579402 765583653 4251 False 944.400000 1967 85.887800 202 6582 5 chr2B.!!$F4 6380
10 TraesCS7D01G415600 chr2B 753828970 753829994 1024 True 565.200000 1061 90.633500 997 2006 2 chr2B.!!$R1 1009
11 TraesCS7D01G415600 chr2A 755246680 755251720 5040 True 1088.500000 1214 86.798000 956 5996 2 chr2A.!!$R1 5040
12 TraesCS7D01G415600 chr2A 748078214 748079122 908 False 1051.000000 1051 87.610000 996 1902 1 chr2A.!!$F1 906
13 TraesCS7D01G415600 chr2A 755335689 755336607 918 False 1026.000000 1026 86.957000 991 1901 1 chr2A.!!$F3 910
14 TraesCS7D01G415600 chr2A 755113310 755115809 2499 False 810.666667 1768 87.856000 1947 6475 3 chr2A.!!$F5 4528
15 TraesCS7D01G415600 chr2A 755086151 755092152 6001 False 688.333333 1242 87.113667 224 6235 3 chr2A.!!$F4 6011
16 TraesCS7D01G415600 chr2A 755108164 755108669 505 False 527.000000 527 85.714000 362 870 1 chr2A.!!$F2 508
17 TraesCS7D01G415600 chr4D 313596957 313597805 848 False 1485.000000 1485 98.233000 2257 3105 1 chr4D.!!$F1 848
18 TraesCS7D01G415600 chr5A 483275793 483276628 835 False 1478.000000 1478 98.565000 2257 3092 1 chr5A.!!$F1 835
19 TraesCS7D01G415600 chr1D 247478760 247479612 852 True 1478.000000 1478 97.897000 2257 3112 1 chr1D.!!$R1 855
20 TraesCS7D01G415600 chr1A 377648757 377649605 848 False 1463.000000 1463 97.762000 2257 3105 1 chr1A.!!$F1 848
21 TraesCS7D01G415600 chr1B 574237326 574238171 845 False 1458.000000 1458 97.754000 2257 3102 1 chr1B.!!$F2 845
22 TraesCS7D01G415600 chr3D 275108722 275109569 847 False 1456.000000 1456 97.642000 2258 3105 1 chr3D.!!$F1 847
23 TraesCS7D01G415600 chr4B 19074200 19075039 839 True 1452.000000 1452 97.857000 2257 3096 1 chr4B.!!$R1 839
24 TraesCS7D01G415600 chr6D 160204341 160205189 848 True 1447.000000 1447 97.409000 2257 3105 1 chr6D.!!$R2 848
25 TraesCS7D01G415600 chr6D 83276506 83277560 1054 True 1201.000000 1201 87.430000 3430 4479 1 chr6D.!!$R1 1049
26 TraesCS7D01G415600 chrUn 23308781 23309840 1059 True 1365.000000 1365 90.132000 3431 4479 1 chrUn.!!$R1 1048
27 TraesCS7D01G415600 chrUn 96036146 96037197 1051 False 1325.000000 1325 89.489000 3432 4479 1 chrUn.!!$F1 1047
28 TraesCS7D01G415600 chr7A 5013094 5014142 1048 False 1323.000000 1323 89.593000 3437 4479 1 chr7A.!!$F1 1042
29 TraesCS7D01G415600 chr7A 670884957 670886015 1058 True 1258.000000 1258 88.346000 3432 4479 1 chr7A.!!$R1 1047
30 TraesCS7D01G415600 chr7A 736019633 736020514 881 True 1175.000000 1175 90.960000 3438 4308 1 chr7A.!!$R2 870
31 TraesCS7D01G415600 chr6B 3821722 3822783 1061 True 1293.000000 1293 88.931000 3433 4479 1 chr6B.!!$R1 1046
32 TraesCS7D01G415600 chr6A 277285178 277286237 1059 False 1221.000000 1221 87.688000 3432 4479 1 chr6A.!!$F1 1047
33 TraesCS7D01G415600 chr3A 13955034 13956091 1057 False 1214.000000 1214 87.594000 3432 4479 1 chr3A.!!$F1 1047
34 TraesCS7D01G415600 chr3A 713847551 713848505 954 False 1184.000000 1184 89.260000 3432 4376 1 chr3A.!!$F2 944

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 181 0.037046 GGAAAGCAATTGGGCACAGG 60.037 55.000 7.72 0.00 35.83 4.00 F
418 438 0.040514 TTTGATGTTGCGGTCTTGCG 60.041 50.000 0.00 0.00 37.81 4.85 F
1054 1121 0.107410 ATGGCTCGTCGTCTCTCTCT 60.107 55.000 0.00 0.00 0.00 3.10 F
1631 1705 0.107703 GAGGTGATCACGGCCATGAA 60.108 55.000 19.33 0.00 30.82 2.57 F
1930 2004 0.744414 TCTTTGCGATACCAGCTGGC 60.744 55.000 33.06 18.36 39.32 4.85 F
2060 2219 1.001860 GCCACAGCCAGCCAAAATAAA 59.998 47.619 0.00 0.00 0.00 1.40 F
3703 4838 1.403780 CGGACTTGTCCTAGGGTTTCG 60.404 57.143 16.60 3.95 0.00 3.46 F
4503 8255 0.421495 TGGAGGAAGATGAAGGGGGA 59.579 55.000 0.00 0.00 0.00 4.81 F
4584 8336 0.037790 GAGAGGAGCGCTCTTGTTGT 60.038 55.000 34.46 17.26 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1922 1996 0.385390 AAAACTGAAACGCCAGCTGG 59.615 50.000 29.34 29.34 37.68 4.85 R
2405 2590 2.621407 CCTACTGCAACATTGACCCCAT 60.621 50.000 0.00 0.00 0.00 4.00 R
2627 2812 1.749063 TCTCAACATACGCATCTCCGT 59.251 47.619 0.00 0.00 44.62 4.69 R
3157 4241 1.276989 CCTGAGCTACGGGGTACAAAA 59.723 52.381 0.00 0.00 41.14 2.44 R
3633 4767 1.002430 TCTTAGAGGTGCTGCTTGGTG 59.998 52.381 0.00 0.00 0.00 4.17 R
3981 5117 1.183030 TTCCCTCTCGTTCGGCTTCA 61.183 55.000 0.00 0.00 0.00 3.02 R
4569 8321 1.069636 CAGAAACAACAAGAGCGCTCC 60.070 52.381 32.94 15.76 0.00 4.70 R
5386 9220 1.202698 GCTTGGAGATAGGGCAATCGT 60.203 52.381 0.00 0.00 0.00 3.73 R
6528 11125 1.198713 TGGTGGCATGTTGGTGTTTT 58.801 45.000 0.00 0.00 0.00 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 9.742144 AGTCTAGGGATATGTGTATGTTACTAG 57.258 37.037 0.00 0.00 0.00 2.57
64 65 9.517868 GTCTAGGGATATGTGTATGTTACTAGT 57.482 37.037 0.00 0.00 0.00 2.57
65 66 9.516546 TCTAGGGATATGTGTATGTTACTAGTG 57.483 37.037 5.39 0.00 0.00 2.74
66 67 9.298250 CTAGGGATATGTGTATGTTACTAGTGT 57.702 37.037 5.39 0.00 0.00 3.55
68 69 9.824216 AGGGATATGTGTATGTTACTAGTGTAT 57.176 33.333 5.39 0.00 0.00 2.29
69 70 9.856488 GGGATATGTGTATGTTACTAGTGTATG 57.144 37.037 5.39 0.00 0.00 2.39
79 80 8.818622 ATGTTACTAGTGTATGTTACTCTCCA 57.181 34.615 5.39 0.00 34.65 3.86
80 81 8.818622 TGTTACTAGTGTATGTTACTCTCCAT 57.181 34.615 5.39 0.00 34.65 3.41
81 82 9.251440 TGTTACTAGTGTATGTTACTCTCCATT 57.749 33.333 5.39 0.00 34.65 3.16
82 83 9.517609 GTTACTAGTGTATGTTACTCTCCATTG 57.482 37.037 5.39 0.00 34.65 2.82
83 84 7.719871 ACTAGTGTATGTTACTCTCCATTGT 57.280 36.000 0.00 0.00 34.65 2.71
84 85 7.548097 ACTAGTGTATGTTACTCTCCATTGTG 58.452 38.462 0.00 0.00 34.65 3.33
85 86 5.734720 AGTGTATGTTACTCTCCATTGTGG 58.265 41.667 0.00 0.00 39.43 4.17
86 87 4.332819 GTGTATGTTACTCTCCATTGTGGC 59.667 45.833 0.00 0.00 37.47 5.01
87 88 4.225042 TGTATGTTACTCTCCATTGTGGCT 59.775 41.667 0.00 0.00 37.47 4.75
88 89 5.423931 TGTATGTTACTCTCCATTGTGGCTA 59.576 40.000 0.00 0.00 37.47 3.93
89 90 4.471904 TGTTACTCTCCATTGTGGCTAG 57.528 45.455 0.00 0.00 37.47 3.42
90 91 3.838317 TGTTACTCTCCATTGTGGCTAGT 59.162 43.478 7.76 7.76 37.47 2.57
91 92 4.081642 TGTTACTCTCCATTGTGGCTAGTC 60.082 45.833 6.40 0.00 37.47 2.59
92 93 2.826488 ACTCTCCATTGTGGCTAGTCT 58.174 47.619 0.00 0.00 37.47 3.24
93 94 3.177228 ACTCTCCATTGTGGCTAGTCTT 58.823 45.455 0.00 0.00 37.47 3.01
94 95 4.353777 ACTCTCCATTGTGGCTAGTCTTA 58.646 43.478 0.00 0.00 37.47 2.10
95 96 4.965532 ACTCTCCATTGTGGCTAGTCTTAT 59.034 41.667 0.00 0.00 37.47 1.73
96 97 5.069781 ACTCTCCATTGTGGCTAGTCTTATC 59.930 44.000 0.00 0.00 37.47 1.75
97 98 4.345257 TCTCCATTGTGGCTAGTCTTATCC 59.655 45.833 0.00 0.00 37.47 2.59
98 99 3.391296 TCCATTGTGGCTAGTCTTATCCC 59.609 47.826 0.00 0.00 37.47 3.85
99 100 3.136443 CCATTGTGGCTAGTCTTATCCCA 59.864 47.826 0.00 0.00 0.00 4.37
100 101 4.202503 CCATTGTGGCTAGTCTTATCCCAT 60.203 45.833 0.00 0.00 0.00 4.00
101 102 4.689612 TTGTGGCTAGTCTTATCCCATC 57.310 45.455 0.00 0.00 0.00 3.51
102 103 2.972713 TGTGGCTAGTCTTATCCCATCC 59.027 50.000 0.00 0.00 0.00 3.51
103 104 2.028930 GTGGCTAGTCTTATCCCATCCG 60.029 54.545 0.00 0.00 0.00 4.18
104 105 2.158370 TGGCTAGTCTTATCCCATCCGA 60.158 50.000 0.00 0.00 0.00 4.55
105 106 2.231721 GGCTAGTCTTATCCCATCCGAC 59.768 54.545 0.00 0.00 0.00 4.79
106 107 2.231721 GCTAGTCTTATCCCATCCGACC 59.768 54.545 0.00 0.00 0.00 4.79
107 108 1.329256 AGTCTTATCCCATCCGACCG 58.671 55.000 0.00 0.00 0.00 4.79
108 109 0.319641 GTCTTATCCCATCCGACCGC 60.320 60.000 0.00 0.00 0.00 5.68
109 110 1.372997 CTTATCCCATCCGACCGCG 60.373 63.158 0.00 0.00 37.24 6.46
120 121 3.998672 GACCGCGGGACAACTGGA 61.999 66.667 31.76 0.00 0.00 3.86
121 122 4.309950 ACCGCGGGACAACTGGAC 62.310 66.667 31.76 0.00 0.00 4.02
123 124 4.351938 CGCGGGACAACTGGACGA 62.352 66.667 0.00 0.00 0.00 4.20
124 125 2.264794 GCGGGACAACTGGACGAT 59.735 61.111 0.00 0.00 0.00 3.73
125 126 1.810030 GCGGGACAACTGGACGATC 60.810 63.158 0.00 0.00 0.00 3.69
126 127 1.516386 CGGGACAACTGGACGATCG 60.516 63.158 14.88 14.88 0.00 3.69
127 128 1.810030 GGGACAACTGGACGATCGC 60.810 63.158 16.60 8.04 0.00 4.58
128 129 2.158959 GGACAACTGGACGATCGCG 61.159 63.158 16.60 0.00 44.79 5.87
129 130 1.154093 GACAACTGGACGATCGCGA 60.154 57.895 16.60 13.09 41.64 5.87
130 131 0.525668 GACAACTGGACGATCGCGAT 60.526 55.000 23.97 23.97 41.64 4.58
131 132 0.525668 ACAACTGGACGATCGCGATC 60.526 55.000 33.93 33.93 41.64 3.69
132 133 0.248661 CAACTGGACGATCGCGATCT 60.249 55.000 37.76 27.42 41.64 2.75
133 134 0.248661 AACTGGACGATCGCGATCTG 60.249 55.000 37.76 32.12 41.64 2.90
134 135 1.095807 ACTGGACGATCGCGATCTGA 61.096 55.000 37.76 21.53 41.64 3.27
135 136 0.239613 CTGGACGATCGCGATCTGAT 59.760 55.000 37.76 26.41 41.64 2.90
136 137 0.238553 TGGACGATCGCGATCTGATC 59.761 55.000 37.76 30.74 41.64 2.92
137 138 0.519519 GGACGATCGCGATCTGATCT 59.480 55.000 37.76 20.00 40.05 2.75
138 139 1.601091 GACGATCGCGATCTGATCTG 58.399 55.000 37.76 26.34 40.05 2.90
139 140 1.195674 GACGATCGCGATCTGATCTGA 59.804 52.381 37.76 12.63 40.05 3.27
140 141 1.069568 ACGATCGCGATCTGATCTGAC 60.070 52.381 37.76 16.29 40.05 3.51
141 142 1.601091 GATCGCGATCTGATCTGACG 58.399 55.000 35.67 14.78 39.30 4.35
142 143 0.239613 ATCGCGATCTGATCTGACGG 59.760 55.000 17.62 10.30 0.00 4.79
143 144 2.013483 CGCGATCTGATCTGACGGC 61.013 63.158 15.16 16.21 0.00 5.68
144 145 2.013483 GCGATCTGATCTGACGGCG 61.013 63.158 15.16 4.80 0.00 6.46
145 146 1.649267 CGATCTGATCTGACGGCGA 59.351 57.895 16.62 0.00 0.00 5.54
146 147 0.385348 CGATCTGATCTGACGGCGAG 60.385 60.000 16.62 0.25 0.00 5.03
147 148 0.662970 GATCTGATCTGACGGCGAGC 60.663 60.000 16.62 5.63 0.00 5.03
148 149 1.387295 ATCTGATCTGACGGCGAGCA 61.387 55.000 16.62 10.64 0.00 4.26
149 150 1.588403 CTGATCTGACGGCGAGCAG 60.588 63.158 16.62 20.11 38.38 4.24
150 151 2.279120 GATCTGACGGCGAGCAGG 60.279 66.667 25.27 12.93 33.05 4.85
151 152 4.521062 ATCTGACGGCGAGCAGGC 62.521 66.667 25.27 0.00 42.76 4.85
169 170 3.659334 CTGCGCTCAGGAAAGCAA 58.341 55.556 9.73 0.00 42.62 3.91
170 171 2.177950 CTGCGCTCAGGAAAGCAAT 58.822 52.632 9.73 0.00 42.62 3.56
171 172 0.524862 CTGCGCTCAGGAAAGCAATT 59.475 50.000 9.73 0.00 42.62 2.32
172 173 0.241749 TGCGCTCAGGAAAGCAATTG 59.758 50.000 9.73 0.00 42.62 2.32
173 174 0.457337 GCGCTCAGGAAAGCAATTGG 60.457 55.000 7.72 0.00 42.62 3.16
174 175 0.171903 CGCTCAGGAAAGCAATTGGG 59.828 55.000 7.72 0.00 42.62 4.12
175 176 0.108472 GCTCAGGAAAGCAATTGGGC 60.108 55.000 7.72 0.00 42.05 5.36
176 177 1.259609 CTCAGGAAAGCAATTGGGCA 58.740 50.000 7.72 0.00 35.83 5.36
177 178 0.968405 TCAGGAAAGCAATTGGGCAC 59.032 50.000 7.72 0.00 35.83 5.01
178 179 0.680618 CAGGAAAGCAATTGGGCACA 59.319 50.000 7.72 0.00 35.83 4.57
179 180 0.971386 AGGAAAGCAATTGGGCACAG 59.029 50.000 7.72 0.00 35.83 3.66
180 181 0.037046 GGAAAGCAATTGGGCACAGG 60.037 55.000 7.72 0.00 35.83 4.00
181 182 0.681175 GAAAGCAATTGGGCACAGGT 59.319 50.000 7.72 0.00 35.83 4.00
182 183 0.393820 AAAGCAATTGGGCACAGGTG 59.606 50.000 7.72 0.00 35.83 4.00
199 200 7.858052 CACAGGTGCACTTTTTAGAATTTAG 57.142 36.000 17.98 0.00 0.00 1.85
200 201 6.863126 CACAGGTGCACTTTTTAGAATTTAGG 59.137 38.462 17.98 0.00 0.00 2.69
206 207 9.529325 GTGCACTTTTTAGAATTTAGGTTCTTT 57.471 29.630 10.32 0.00 39.15 2.52
222 223 7.549147 AGGTTCTTTAATAGTGGACTGTGTA 57.451 36.000 0.00 0.00 0.00 2.90
261 262 4.644685 TCCATAATAAAAGGAGGCAAGTGC 59.355 41.667 0.00 0.00 41.14 4.40
262 263 4.498009 CCATAATAAAAGGAGGCAAGTGCG 60.498 45.833 0.00 0.00 43.26 5.34
264 265 1.241315 TAAAAGGAGGCAAGTGCGGC 61.241 55.000 0.00 0.00 43.26 6.53
282 283 3.640407 GCCTGACCAGTGGCCAGA 61.640 66.667 25.68 0.00 43.11 3.86
288 289 1.962807 TGACCAGTGGCCAGAAAAATG 59.037 47.619 5.11 0.00 0.00 2.32
290 291 2.827921 GACCAGTGGCCAGAAAAATGAT 59.172 45.455 5.11 0.00 0.00 2.45
292 293 3.763897 ACCAGTGGCCAGAAAAATGATAC 59.236 43.478 5.11 0.00 0.00 2.24
295 296 5.105228 CCAGTGGCCAGAAAAATGATACATT 60.105 40.000 5.11 0.00 0.00 2.71
298 299 4.161942 TGGCCAGAAAAATGATACATTGGG 59.838 41.667 0.00 0.00 0.00 4.12
301 302 5.812127 GCCAGAAAAATGATACATTGGGTTC 59.188 40.000 0.00 0.00 0.00 3.62
303 304 6.155049 CCAGAAAAATGATACATTGGGTTCCT 59.845 38.462 0.00 0.00 0.00 3.36
304 305 7.341769 CCAGAAAAATGATACATTGGGTTCCTA 59.658 37.037 0.00 0.00 0.00 2.94
305 306 8.917088 CAGAAAAATGATACATTGGGTTCCTAT 58.083 33.333 0.00 0.00 0.00 2.57
306 307 9.136323 AGAAAAATGATACATTGGGTTCCTATC 57.864 33.333 0.00 0.00 0.00 2.08
307 308 8.837099 AAAAATGATACATTGGGTTCCTATCA 57.163 30.769 0.00 0.00 0.00 2.15
308 309 9.438163 AAAAATGATACATTGGGTTCCTATCAT 57.562 29.630 0.00 5.35 34.47 2.45
309 310 8.413309 AAATGATACATTGGGTTCCTATCATG 57.587 34.615 9.65 0.00 33.71 3.07
310 311 5.316167 TGATACATTGGGTTCCTATCATGC 58.684 41.667 0.00 0.00 0.00 4.06
311 312 3.959495 ACATTGGGTTCCTATCATGCT 57.041 42.857 0.00 0.00 0.00 3.79
312 313 6.272090 TGATACATTGGGTTCCTATCATGCTA 59.728 38.462 0.00 0.00 0.00 3.49
313 314 4.718961 ACATTGGGTTCCTATCATGCTAC 58.281 43.478 0.00 0.00 0.00 3.58
361 381 4.235079 AGGTAGCCTGTTGATGCAATTA 57.765 40.909 0.00 0.00 29.57 1.40
412 432 8.770438 AATTTATAACAATTTGATGTTGCGGT 57.230 26.923 2.79 0.00 43.13 5.68
413 433 7.804614 TTTATAACAATTTGATGTTGCGGTC 57.195 32.000 2.79 0.00 43.13 4.79
414 434 5.643379 ATAACAATTTGATGTTGCGGTCT 57.357 34.783 2.79 0.00 43.13 3.85
415 435 4.320608 AACAATTTGATGTTGCGGTCTT 57.679 36.364 2.79 0.00 41.78 3.01
416 436 3.641648 ACAATTTGATGTTGCGGTCTTG 58.358 40.909 2.79 0.00 0.00 3.02
417 437 2.352503 ATTTGATGTTGCGGTCTTGC 57.647 45.000 0.00 0.00 0.00 4.01
418 438 0.040514 TTTGATGTTGCGGTCTTGCG 60.041 50.000 0.00 0.00 37.81 4.85
419 439 1.163420 TTGATGTTGCGGTCTTGCGT 61.163 50.000 0.00 0.00 37.81 5.24
501 522 7.939784 AGGTAAAGTTTTACATCCTCCATTC 57.060 36.000 14.65 0.00 43.64 2.67
523 544 9.347240 CATTCCAGAATATGAGGTGTTCTAAAT 57.653 33.333 0.00 0.00 36.28 1.40
768 809 5.673029 AGCGAGTAACATTGTAAAACGAAC 58.327 37.500 0.00 0.00 0.00 3.95
786 827 6.017400 ACGAACGGAGTACTTAAATCAGAA 57.983 37.500 0.00 0.00 45.00 3.02
813 860 2.845363 TTGGGTACTTCTTTCGTCCC 57.155 50.000 0.00 0.00 35.85 4.46
818 865 3.259123 GGGTACTTCTTTCGTCCCAACTA 59.741 47.826 0.00 0.00 35.43 2.24
823 870 7.224167 GGTACTTCTTTCGTCCCAACTAATATG 59.776 40.741 0.00 0.00 0.00 1.78
824 871 5.585047 ACTTCTTTCGTCCCAACTAATATGC 59.415 40.000 0.00 0.00 0.00 3.14
834 881 7.161404 GTCCCAACTAATATGCTCACATATCA 58.839 38.462 0.00 0.00 46.58 2.15
848 895 9.783081 TGCTCACATATCAGTTATAATGACATT 57.217 29.630 5.87 5.87 0.00 2.71
868 915 7.016760 TGACATTTTATATTATGAGACCGGGGA 59.983 37.037 6.32 0.00 0.00 4.81
876 923 3.614568 ATGAGACCGGGGAGTACTATT 57.385 47.619 6.32 0.00 0.00 1.73
879 926 3.703052 TGAGACCGGGGAGTACTATTTTC 59.297 47.826 6.32 0.00 0.00 2.29
883 930 4.582869 ACCGGGGAGTACTATTTTCAAAC 58.417 43.478 6.32 0.00 0.00 2.93
887 934 6.016108 CCGGGGAGTACTATTTTCAAACAAAA 60.016 38.462 0.00 0.00 0.00 2.44
888 935 7.081976 CGGGGAGTACTATTTTCAAACAAAAG 58.918 38.462 0.00 0.00 0.00 2.27
889 936 7.040961 CGGGGAGTACTATTTTCAAACAAAAGA 60.041 37.037 0.00 0.00 0.00 2.52
904 956 8.682710 TCAAACAAAAGAAGTACATATATGGCC 58.317 33.333 16.96 0.00 0.00 5.36
905 957 8.686334 CAAACAAAAGAAGTACATATATGGCCT 58.314 33.333 16.96 8.81 0.00 5.19
907 959 9.561069 AACAAAAGAAGTACATATATGGCCTAG 57.439 33.333 16.96 0.00 0.00 3.02
934 986 8.440059 TGTCGAAAACACAACTATGATTATGAC 58.560 33.333 0.00 0.00 31.20 3.06
935 987 8.656849 GTCGAAAACACAACTATGATTATGACT 58.343 33.333 0.00 0.00 0.00 3.41
936 988 9.214957 TCGAAAACACAACTATGATTATGACTT 57.785 29.630 0.00 0.00 0.00 3.01
937 989 9.825972 CGAAAACACAACTATGATTATGACTTT 57.174 29.630 0.00 0.00 0.00 2.66
975 1034 2.566833 ATTAAGTGTCTGCTGTGCCA 57.433 45.000 0.00 0.00 0.00 4.92
1024 1091 3.057548 CCATGGCTGTGCTTGCGA 61.058 61.111 0.00 0.00 0.00 5.10
1026 1093 2.281692 ATGGCTGTGCTTGCGACA 60.282 55.556 0.00 0.00 0.00 4.35
1054 1121 0.107410 ATGGCTCGTCGTCTCTCTCT 60.107 55.000 0.00 0.00 0.00 3.10
1198 1268 0.541863 CCTAGCCAAGATCCACGGTT 59.458 55.000 0.00 0.00 0.00 4.44
1200 1270 1.207089 CTAGCCAAGATCCACGGTTCA 59.793 52.381 0.00 0.00 0.00 3.18
1290 1360 2.315246 GCAGAGGCATGATTCCGTC 58.685 57.895 0.00 0.00 40.72 4.79
1631 1705 0.107703 GAGGTGATCACGGCCATGAA 60.108 55.000 19.33 0.00 30.82 2.57
1671 1745 1.111116 ACGTGTCCGACTTCTTCCCA 61.111 55.000 0.00 0.00 37.88 4.37
1681 1755 3.589654 TTCTTCCCAGTGCTCGCGG 62.590 63.158 6.13 0.00 0.00 6.46
1898 1972 2.931325 GTTCACAGTTCACGGTAACACA 59.069 45.455 5.15 0.00 0.00 3.72
1921 1995 6.183360 ACACAACAACTTTCTTCTTTGCGATA 60.183 34.615 0.00 0.00 0.00 2.92
1922 1996 6.140737 CACAACAACTTTCTTCTTTGCGATAC 59.859 38.462 0.00 0.00 0.00 2.24
1930 2004 0.744414 TCTTTGCGATACCAGCTGGC 60.744 55.000 33.06 18.36 39.32 4.85
2057 2216 3.062639 GCCACAGCCAGCCAAAAT 58.937 55.556 0.00 0.00 0.00 1.82
2060 2219 1.001860 GCCACAGCCAGCCAAAATAAA 59.998 47.619 0.00 0.00 0.00 1.40
2236 2421 8.127954 ACAAAATTTACATGTGGATTTTTGTGC 58.872 29.630 27.10 0.00 31.39 4.57
2251 2436 7.010738 GGATTTTTGTGCCATGTTAATCATCTG 59.989 37.037 0.00 0.00 34.09 2.90
2265 2450 5.384063 AATCATCTGCTACTATGGAGACG 57.616 43.478 0.00 0.00 37.24 4.18
2423 2608 2.897271 TATGGGGTCAATGTTGCAGT 57.103 45.000 0.00 0.00 0.00 4.40
2627 2812 4.776349 ACATGTTCAACAGTTAGGTGTGA 58.224 39.130 0.00 0.00 35.97 3.58
3044 3231 5.140747 AGGCTTTGTTGTTGTTGTTGTTA 57.859 34.783 0.00 0.00 0.00 2.41
3075 3274 4.207599 GTTGTTGTTGTTGTTGTTGTTGC 58.792 39.130 0.00 0.00 0.00 4.17
3105 3304 5.109210 TGTTGTTGTTGTTGTTGTTGTTGA 58.891 33.333 0.00 0.00 0.00 3.18
3107 3306 6.074088 TGTTGTTGTTGTTGTTGTTGTTGATC 60.074 34.615 0.00 0.00 0.00 2.92
3108 3307 5.532557 TGTTGTTGTTGTTGTTGTTGATCA 58.467 33.333 0.00 0.00 0.00 2.92
3109 3308 6.162079 TGTTGTTGTTGTTGTTGTTGATCAT 58.838 32.000 0.00 0.00 0.00 2.45
3110 3309 6.309980 TGTTGTTGTTGTTGTTGTTGATCATC 59.690 34.615 0.00 0.00 0.00 2.92
3111 3310 6.206395 TGTTGTTGTTGTTGTTGATCATCT 57.794 33.333 0.00 0.00 0.00 2.90
3112 3311 6.035217 TGTTGTTGTTGTTGTTGATCATCTG 58.965 36.000 0.00 0.00 0.00 2.90
3113 3312 4.609947 TGTTGTTGTTGTTGATCATCTGC 58.390 39.130 0.00 0.00 0.00 4.26
3114 3313 4.338964 TGTTGTTGTTGTTGATCATCTGCT 59.661 37.500 0.00 0.00 0.00 4.24
3115 3314 5.530543 TGTTGTTGTTGTTGATCATCTGCTA 59.469 36.000 0.00 0.00 0.00 3.49
3116 3315 5.611796 TGTTGTTGTTGATCATCTGCTAC 57.388 39.130 0.00 1.81 0.00 3.58
3190 4277 3.310860 CTCAGGGCGTGGTACCACC 62.311 68.421 34.05 26.26 43.49 4.61
3209 4296 5.192927 CCACCAGAAGCCAAATAAGTATGA 58.807 41.667 0.00 0.00 0.00 2.15
3220 4307 6.095440 GCCAAATAAGTATGATGTCACCACTT 59.905 38.462 13.28 13.28 37.83 3.16
3240 4337 8.612145 ACCACTTTAATACCCTTTGAACTAGAT 58.388 33.333 0.00 0.00 0.00 1.98
3417 4545 9.744125 ATCCTTTGAGCCCCTGTATTATATATA 57.256 33.333 0.00 0.00 0.00 0.86
3418 4546 9.744125 TCCTTTGAGCCCCTGTATTATATATAT 57.256 33.333 0.00 0.00 0.00 0.86
3419 4547 9.784531 CCTTTGAGCCCCTGTATTATATATATG 57.215 37.037 5.44 0.00 0.00 1.78
3449 4577 7.956328 AGAACTTTACTGAAAAAGGGTTTCT 57.044 32.000 10.42 8.08 40.16 2.52
3570 4704 1.876714 GCTCGACAAAGCGCGGATA 60.877 57.895 8.83 0.00 31.56 2.59
3610 4744 3.520569 CTCCAAAAACAAACCACCACAG 58.479 45.455 0.00 0.00 0.00 3.66
3649 4783 2.282040 GCACCAAGCAGCACCTCT 60.282 61.111 0.00 0.00 44.79 3.69
3659 4793 2.235898 AGCAGCACCTCTAAGAAGGAAG 59.764 50.000 0.00 0.00 38.87 3.46
3688 4822 4.681978 GACGTTGCTGCCCGGACT 62.682 66.667 0.73 0.00 0.00 3.85
3703 4838 1.403780 CGGACTTGTCCTAGGGTTTCG 60.404 57.143 16.60 3.95 0.00 3.46
3813 4948 2.159382 GAAGAACCGGCAAGGATTTCA 58.841 47.619 0.00 0.00 45.00 2.69
3981 5117 2.654079 CGGAGGGAGAAGCAGCACT 61.654 63.158 0.00 0.00 0.00 4.40
4493 8245 4.161295 CGGCGGCATGGAGGAAGA 62.161 66.667 10.53 0.00 0.00 2.87
4494 8246 2.512896 GGCGGCATGGAGGAAGAT 59.487 61.111 3.07 0.00 0.00 2.40
4495 8247 1.895707 GGCGGCATGGAGGAAGATG 60.896 63.158 3.07 0.00 0.00 2.90
4496 8248 1.146930 GCGGCATGGAGGAAGATGA 59.853 57.895 0.00 0.00 0.00 2.92
4497 8249 0.464373 GCGGCATGGAGGAAGATGAA 60.464 55.000 0.00 0.00 0.00 2.57
4498 8250 1.590932 CGGCATGGAGGAAGATGAAG 58.409 55.000 0.00 0.00 0.00 3.02
4499 8251 1.813092 CGGCATGGAGGAAGATGAAGG 60.813 57.143 0.00 0.00 0.00 3.46
4500 8252 1.478288 GGCATGGAGGAAGATGAAGGG 60.478 57.143 0.00 0.00 0.00 3.95
4501 8253 1.478288 GCATGGAGGAAGATGAAGGGG 60.478 57.143 0.00 0.00 0.00 4.79
4502 8254 1.144503 CATGGAGGAAGATGAAGGGGG 59.855 57.143 0.00 0.00 0.00 5.40
4503 8255 0.421495 TGGAGGAAGATGAAGGGGGA 59.579 55.000 0.00 0.00 0.00 4.81
4504 8256 1.135960 GGAGGAAGATGAAGGGGGAG 58.864 60.000 0.00 0.00 0.00 4.30
4505 8257 1.135960 GAGGAAGATGAAGGGGGAGG 58.864 60.000 0.00 0.00 0.00 4.30
4506 8258 0.990818 AGGAAGATGAAGGGGGAGGC 60.991 60.000 0.00 0.00 0.00 4.70
4507 8259 1.147153 GAAGATGAAGGGGGAGGCG 59.853 63.158 0.00 0.00 0.00 5.52
4508 8260 2.949705 GAAGATGAAGGGGGAGGCGC 62.950 65.000 0.00 0.00 0.00 6.53
4509 8261 4.918201 GATGAAGGGGGAGGCGCG 62.918 72.222 0.00 0.00 0.00 6.86
4572 8324 3.213402 GGTCGCGGGAGAGAGGAG 61.213 72.222 6.13 0.00 40.02 3.69
4573 8325 3.894947 GTCGCGGGAGAGAGGAGC 61.895 72.222 6.13 0.00 40.02 4.70
4577 8329 3.591835 CGGGAGAGAGGAGCGCTC 61.592 72.222 29.38 29.38 42.05 5.03
4578 8330 2.123897 GGGAGAGAGGAGCGCTCT 60.124 66.667 34.46 21.46 42.91 4.09
4579 8331 1.756561 GGGAGAGAGGAGCGCTCTT 60.757 63.158 34.46 29.44 40.49 2.85
4580 8332 1.437160 GGAGAGAGGAGCGCTCTTG 59.563 63.158 34.46 0.00 40.49 3.02
4581 8333 1.319614 GGAGAGAGGAGCGCTCTTGT 61.320 60.000 34.46 27.44 40.49 3.16
4582 8334 0.530288 GAGAGAGGAGCGCTCTTGTT 59.470 55.000 34.46 18.83 40.49 2.83
4583 8335 0.246086 AGAGAGGAGCGCTCTTGTTG 59.754 55.000 34.46 0.00 37.34 3.33
4584 8336 0.037790 GAGAGGAGCGCTCTTGTTGT 60.038 55.000 34.46 17.26 0.00 3.32
4585 8337 0.394565 AGAGGAGCGCTCTTGTTGTT 59.605 50.000 34.46 13.01 0.00 2.83
4586 8338 1.202698 AGAGGAGCGCTCTTGTTGTTT 60.203 47.619 34.46 11.70 0.00 2.83
4587 8339 1.195674 GAGGAGCGCTCTTGTTGTTTC 59.804 52.381 34.46 15.99 0.00 2.78
4588 8340 1.202698 AGGAGCGCTCTTGTTGTTTCT 60.203 47.619 34.46 17.97 0.00 2.52
4589 8341 1.069636 GGAGCGCTCTTGTTGTTTCTG 60.070 52.381 34.46 0.00 0.00 3.02
4590 8342 1.867233 GAGCGCTCTTGTTGTTTCTGA 59.133 47.619 29.88 0.00 0.00 3.27
4591 8343 2.287915 GAGCGCTCTTGTTGTTTCTGAA 59.712 45.455 29.88 0.00 0.00 3.02
4592 8344 2.682856 AGCGCTCTTGTTGTTTCTGAAA 59.317 40.909 2.64 0.00 0.00 2.69
4593 8345 3.038710 GCGCTCTTGTTGTTTCTGAAAG 58.961 45.455 0.00 0.00 0.00 2.62
4594 8346 3.242739 GCGCTCTTGTTGTTTCTGAAAGA 60.243 43.478 0.00 0.00 44.68 2.52
4652 8406 5.764686 TGGAGCACAATAACTATAATGGCAG 59.235 40.000 0.00 0.00 0.00 4.85
4665 8419 3.760580 AATGGCAGCCACTCTAGTATC 57.239 47.619 19.10 0.00 35.80 2.24
4805 8596 9.373750 CATGCTATTCATATGTTACAAAGAACG 57.626 33.333 1.90 0.00 33.19 3.95
4964 8761 5.418676 TCGTAAGATTGCACTTCATCATCA 58.581 37.500 0.00 0.00 45.01 3.07
5333 9167 3.826524 TCAATGGCTAAGGTTTGTGACA 58.173 40.909 0.00 0.00 0.00 3.58
5352 9186 2.878406 ACAAGCTTGCACAAGTTATCGT 59.122 40.909 26.27 0.00 40.45 3.73
5386 9220 6.882610 AACATTGAAGAAGCTGACATTGTA 57.117 33.333 0.00 0.00 0.00 2.41
5862 9698 8.547481 AGAGGAAAAGAAAAGGAACCATTTTA 57.453 30.769 0.00 0.00 30.22 1.52
5880 9716 8.793592 ACCATTTTAAAGAGTGGTTTAGATGTC 58.206 33.333 13.25 0.00 42.03 3.06
5947 9783 6.978343 TCCTTACTTATGTGACGAATTTGG 57.022 37.500 0.00 0.00 0.00 3.28
5956 9792 8.786826 TTATGTGACGAATTTGGTATTCTCTT 57.213 30.769 0.00 0.00 0.00 2.85
5980 9816 3.860641 AGTTCAAACCTTTTGCACCTTG 58.139 40.909 0.00 0.00 0.00 3.61
6000 9870 8.190784 CACCTTGATTATCCACTAATTTTCACC 58.809 37.037 0.00 0.00 29.93 4.02
6128 10000 5.717078 ACTGACACATTTTCAGATGCAAT 57.283 34.783 6.37 0.00 42.81 3.56
6173 10045 7.437267 GCATAAATTTCAGATCTTTGACCATGG 59.563 37.037 11.19 11.19 0.00 3.66
6278 10865 4.449068 CGTCCAGATACAACATTAGGATGC 59.551 45.833 0.00 0.00 36.72 3.91
6313 10900 3.104519 TGCTTTTGGATGGTGATGGAT 57.895 42.857 0.00 0.00 0.00 3.41
6359 10946 8.840867 GTGCTTCTTCAAATAACAGAATAAACG 58.159 33.333 0.00 0.00 0.00 3.60
6516 11113 6.761312 TCGTTCTCCTTTTAATAGTGAACCA 58.239 36.000 15.90 7.36 31.61 3.67
6623 11220 6.945435 TGCTAGTGACCAAATAAAAATCAGGA 59.055 34.615 0.00 0.00 0.00 3.86
6701 11298 1.412710 TCACCCGATTGCCTAGTGATC 59.587 52.381 0.00 0.00 32.75 2.92
6703 11300 0.758734 CCCGATTGCCTAGTGATCCA 59.241 55.000 0.00 0.00 0.00 3.41
6712 11309 8.137437 CGATTGCCTAGTGATCCAAAAATTAAT 58.863 33.333 0.00 0.00 0.00 1.40
6738 11335 0.178964 TTTGCACCTGCTTTAGCCCT 60.179 50.000 0.00 0.00 42.66 5.19
6810 11407 2.379907 TCCCATCTCCCTTGCTTTTTCT 59.620 45.455 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 9.742144 CTAGTAACATACACATATCCCTAGACT 57.258 37.037 0.00 0.00 0.00 3.24
38 39 9.517868 ACTAGTAACATACACATATCCCTAGAC 57.482 37.037 0.00 0.00 0.00 2.59
39 40 9.516546 CACTAGTAACATACACATATCCCTAGA 57.483 37.037 0.00 0.00 0.00 2.43
40 41 9.298250 ACACTAGTAACATACACATATCCCTAG 57.702 37.037 0.00 0.00 0.00 3.02
42 43 9.824216 ATACACTAGTAACATACACATATCCCT 57.176 33.333 0.00 0.00 33.13 4.20
43 44 9.856488 CATACACTAGTAACATACACATATCCC 57.144 37.037 0.00 0.00 33.13 3.85
53 54 9.910267 TGGAGAGTAACATACACTAGTAACATA 57.090 33.333 0.00 0.00 33.13 2.29
54 55 8.818622 TGGAGAGTAACATACACTAGTAACAT 57.181 34.615 0.00 0.00 33.13 2.71
55 56 8.818622 ATGGAGAGTAACATACACTAGTAACA 57.181 34.615 0.00 0.00 33.13 2.41
56 57 9.517609 CAATGGAGAGTAACATACACTAGTAAC 57.482 37.037 0.00 0.00 33.13 2.50
57 58 9.251440 ACAATGGAGAGTAACATACACTAGTAA 57.749 33.333 0.00 0.00 33.13 2.24
58 59 8.683615 CACAATGGAGAGTAACATACACTAGTA 58.316 37.037 0.00 0.00 29.62 1.82
59 60 7.363880 CCACAATGGAGAGTAACATACACTAGT 60.364 40.741 0.00 0.00 40.96 2.57
60 61 6.980978 CCACAATGGAGAGTAACATACACTAG 59.019 42.308 0.00 0.00 40.96 2.57
61 62 6.629515 GCCACAATGGAGAGTAACATACACTA 60.630 42.308 0.00 0.00 40.96 2.74
62 63 5.734720 CCACAATGGAGAGTAACATACACT 58.265 41.667 0.00 0.00 40.96 3.55
63 64 4.332819 GCCACAATGGAGAGTAACATACAC 59.667 45.833 0.00 0.00 40.96 2.90
64 65 4.225042 AGCCACAATGGAGAGTAACATACA 59.775 41.667 0.00 0.00 40.96 2.29
65 66 4.770795 AGCCACAATGGAGAGTAACATAC 58.229 43.478 0.00 0.00 40.96 2.39
66 67 5.661312 ACTAGCCACAATGGAGAGTAACATA 59.339 40.000 0.00 0.00 40.96 2.29
67 68 4.471386 ACTAGCCACAATGGAGAGTAACAT 59.529 41.667 0.00 0.00 40.96 2.71
68 69 3.838317 ACTAGCCACAATGGAGAGTAACA 59.162 43.478 0.00 0.00 40.96 2.41
69 70 4.160626 AGACTAGCCACAATGGAGAGTAAC 59.839 45.833 0.00 0.00 40.96 2.50
70 71 4.353777 AGACTAGCCACAATGGAGAGTAA 58.646 43.478 0.00 0.00 40.96 2.24
71 72 3.982516 AGACTAGCCACAATGGAGAGTA 58.017 45.455 0.00 0.00 40.96 2.59
72 73 2.826488 AGACTAGCCACAATGGAGAGT 58.174 47.619 0.00 0.46 40.96 3.24
73 74 3.902881 AAGACTAGCCACAATGGAGAG 57.097 47.619 0.00 0.00 40.96 3.20
74 75 4.345257 GGATAAGACTAGCCACAATGGAGA 59.655 45.833 0.00 0.00 40.96 3.71
75 76 4.503991 GGGATAAGACTAGCCACAATGGAG 60.504 50.000 0.00 0.00 40.96 3.86
76 77 3.391296 GGGATAAGACTAGCCACAATGGA 59.609 47.826 0.00 0.00 40.96 3.41
77 78 3.136443 TGGGATAAGACTAGCCACAATGG 59.864 47.826 0.00 0.00 41.55 3.16
78 79 4.422073 TGGGATAAGACTAGCCACAATG 57.578 45.455 0.00 0.00 35.07 2.82
79 80 4.042187 GGATGGGATAAGACTAGCCACAAT 59.958 45.833 0.00 0.00 35.07 2.71
80 81 3.391296 GGATGGGATAAGACTAGCCACAA 59.609 47.826 0.00 0.00 35.07 3.33
81 82 2.972713 GGATGGGATAAGACTAGCCACA 59.027 50.000 0.00 0.00 35.07 4.17
82 83 2.028930 CGGATGGGATAAGACTAGCCAC 60.029 54.545 0.00 0.00 35.07 5.01
83 84 2.158370 TCGGATGGGATAAGACTAGCCA 60.158 50.000 0.00 0.00 35.07 4.75
84 85 2.231721 GTCGGATGGGATAAGACTAGCC 59.768 54.545 0.00 0.00 32.36 3.93
85 86 2.231721 GGTCGGATGGGATAAGACTAGC 59.768 54.545 0.00 0.00 32.86 3.42
86 87 2.488545 CGGTCGGATGGGATAAGACTAG 59.511 54.545 0.00 0.00 32.86 2.57
87 88 2.511659 CGGTCGGATGGGATAAGACTA 58.488 52.381 0.00 0.00 32.86 2.59
88 89 1.329256 CGGTCGGATGGGATAAGACT 58.671 55.000 0.00 0.00 32.86 3.24
89 90 0.319641 GCGGTCGGATGGGATAAGAC 60.320 60.000 0.00 0.00 0.00 3.01
90 91 1.802337 CGCGGTCGGATGGGATAAGA 61.802 60.000 0.00 0.00 0.00 2.10
91 92 1.372997 CGCGGTCGGATGGGATAAG 60.373 63.158 0.00 0.00 0.00 1.73
92 93 2.732016 CGCGGTCGGATGGGATAA 59.268 61.111 0.00 0.00 0.00 1.75
103 104 3.998672 TCCAGTTGTCCCGCGGTC 61.999 66.667 26.12 17.15 0.00 4.79
104 105 4.309950 GTCCAGTTGTCCCGCGGT 62.310 66.667 26.12 0.00 0.00 5.68
106 107 3.642778 ATCGTCCAGTTGTCCCGCG 62.643 63.158 0.00 0.00 0.00 6.46
107 108 1.810030 GATCGTCCAGTTGTCCCGC 60.810 63.158 0.00 0.00 0.00 6.13
108 109 1.516386 CGATCGTCCAGTTGTCCCG 60.516 63.158 7.03 0.00 0.00 5.14
109 110 1.810030 GCGATCGTCCAGTTGTCCC 60.810 63.158 17.81 0.00 0.00 4.46
110 111 2.158959 CGCGATCGTCCAGTTGTCC 61.159 63.158 17.81 0.00 0.00 4.02
111 112 0.525668 ATCGCGATCGTCCAGTTGTC 60.526 55.000 17.62 0.00 36.96 3.18
112 113 0.525668 GATCGCGATCGTCCAGTTGT 60.526 55.000 31.24 1.10 36.96 3.32
113 114 0.248661 AGATCGCGATCGTCCAGTTG 60.249 55.000 35.89 0.00 42.48 3.16
114 115 0.248661 CAGATCGCGATCGTCCAGTT 60.249 55.000 35.89 19.11 42.48 3.16
115 116 1.095807 TCAGATCGCGATCGTCCAGT 61.096 55.000 35.89 19.79 42.48 4.00
116 117 0.239613 ATCAGATCGCGATCGTCCAG 59.760 55.000 35.89 25.22 42.48 3.86
117 118 0.238553 GATCAGATCGCGATCGTCCA 59.761 55.000 35.89 23.70 42.48 4.02
118 119 0.519519 AGATCAGATCGCGATCGTCC 59.480 55.000 35.89 26.47 43.35 4.79
119 120 1.195674 TCAGATCAGATCGCGATCGTC 59.804 52.381 35.89 31.77 43.35 4.20
120 121 1.069568 GTCAGATCAGATCGCGATCGT 60.070 52.381 35.89 27.38 43.35 3.73
121 122 1.601091 GTCAGATCAGATCGCGATCG 58.399 55.000 35.89 29.92 43.35 3.69
122 123 1.601091 CGTCAGATCAGATCGCGATC 58.399 55.000 35.99 35.99 39.71 3.69
123 124 0.239613 CCGTCAGATCAGATCGCGAT 59.760 55.000 23.97 23.97 0.00 4.58
124 125 1.649267 CCGTCAGATCAGATCGCGA 59.351 57.895 13.09 13.09 0.00 5.87
125 126 2.013483 GCCGTCAGATCAGATCGCG 61.013 63.158 0.00 0.00 0.00 5.87
126 127 2.013483 CGCCGTCAGATCAGATCGC 61.013 63.158 4.67 1.34 0.00 4.58
127 128 0.385348 CTCGCCGTCAGATCAGATCG 60.385 60.000 4.67 0.84 0.00 3.69
128 129 0.662970 GCTCGCCGTCAGATCAGATC 60.663 60.000 1.64 1.64 0.00 2.75
129 130 1.361993 GCTCGCCGTCAGATCAGAT 59.638 57.895 0.00 0.00 0.00 2.90
130 131 1.997928 CTGCTCGCCGTCAGATCAGA 61.998 60.000 0.00 0.00 34.76 3.27
131 132 1.588403 CTGCTCGCCGTCAGATCAG 60.588 63.158 0.00 0.00 32.26 2.90
132 133 2.491621 CTGCTCGCCGTCAGATCA 59.508 61.111 0.00 0.00 32.26 2.92
133 134 2.279120 CCTGCTCGCCGTCAGATC 60.279 66.667 9.86 0.00 32.26 2.75
134 135 4.521062 GCCTGCTCGCCGTCAGAT 62.521 66.667 9.86 0.00 32.26 2.90
152 153 0.524862 AATTGCTTTCCTGAGCGCAG 59.475 50.000 11.47 10.92 45.64 5.18
153 154 0.241749 CAATTGCTTTCCTGAGCGCA 59.758 50.000 11.47 0.00 45.64 6.09
154 155 0.457337 CCAATTGCTTTCCTGAGCGC 60.457 55.000 0.00 0.00 45.64 5.92
155 156 0.171903 CCCAATTGCTTTCCTGAGCG 59.828 55.000 0.00 0.00 45.64 5.03
156 157 0.108472 GCCCAATTGCTTTCCTGAGC 60.108 55.000 0.00 0.00 43.00 4.26
157 158 1.067354 GTGCCCAATTGCTTTCCTGAG 60.067 52.381 0.00 0.00 0.00 3.35
158 159 0.968405 GTGCCCAATTGCTTTCCTGA 59.032 50.000 0.00 0.00 0.00 3.86
159 160 0.680618 TGTGCCCAATTGCTTTCCTG 59.319 50.000 0.00 0.00 0.00 3.86
160 161 0.971386 CTGTGCCCAATTGCTTTCCT 59.029 50.000 0.00 0.00 0.00 3.36
161 162 0.037046 CCTGTGCCCAATTGCTTTCC 60.037 55.000 0.00 0.00 0.00 3.13
162 163 0.681175 ACCTGTGCCCAATTGCTTTC 59.319 50.000 0.00 0.00 0.00 2.62
163 164 0.393820 CACCTGTGCCCAATTGCTTT 59.606 50.000 0.00 0.00 0.00 3.51
164 165 2.051941 CACCTGTGCCCAATTGCTT 58.948 52.632 0.00 0.00 0.00 3.91
165 166 3.781760 CACCTGTGCCCAATTGCT 58.218 55.556 0.00 0.00 0.00 3.91
175 176 6.863126 CCTAAATTCTAAAAAGTGCACCTGTG 59.137 38.462 14.63 0.00 0.00 3.66
176 177 6.549736 ACCTAAATTCTAAAAAGTGCACCTGT 59.450 34.615 14.63 0.00 0.00 4.00
177 178 6.981722 ACCTAAATTCTAAAAAGTGCACCTG 58.018 36.000 14.63 0.00 0.00 4.00
178 179 7.505923 AGAACCTAAATTCTAAAAAGTGCACCT 59.494 33.333 14.63 0.00 37.16 4.00
179 180 7.658261 AGAACCTAAATTCTAAAAAGTGCACC 58.342 34.615 14.63 0.00 37.16 5.01
180 181 9.529325 AAAGAACCTAAATTCTAAAAAGTGCAC 57.471 29.630 9.40 9.40 37.99 4.57
194 195 9.449719 CACAGTCCACTATTAAAGAACCTAAAT 57.550 33.333 0.00 0.00 0.00 1.40
195 196 8.434392 ACACAGTCCACTATTAAAGAACCTAAA 58.566 33.333 0.00 0.00 0.00 1.85
196 197 7.970102 ACACAGTCCACTATTAAAGAACCTAA 58.030 34.615 0.00 0.00 0.00 2.69
197 198 7.549147 ACACAGTCCACTATTAAAGAACCTA 57.451 36.000 0.00 0.00 0.00 3.08
198 199 6.435292 ACACAGTCCACTATTAAAGAACCT 57.565 37.500 0.00 0.00 0.00 3.50
199 200 8.788325 ATTACACAGTCCACTATTAAAGAACC 57.212 34.615 0.00 0.00 0.00 3.62
200 201 9.654663 AGATTACACAGTCCACTATTAAAGAAC 57.345 33.333 0.00 0.00 0.00 3.01
206 207 7.563556 TCCATCAGATTACACAGTCCACTATTA 59.436 37.037 0.00 0.00 0.00 0.98
216 217 5.830912 GAGAGTCTCCATCAGATTACACAG 58.169 45.833 9.15 0.00 32.08 3.66
242 243 3.013921 CCGCACTTGCCTCCTTTTATTA 58.986 45.455 0.00 0.00 37.91 0.98
269 270 2.238521 TCATTTTTCTGGCCACTGGTC 58.761 47.619 0.00 0.00 0.00 4.02
270 271 2.380064 TCATTTTTCTGGCCACTGGT 57.620 45.000 0.00 0.00 0.00 4.00
282 283 8.837099 TGATAGGAACCCAATGTATCATTTTT 57.163 30.769 0.00 0.00 0.00 1.94
288 289 5.564550 AGCATGATAGGAACCCAATGTATC 58.435 41.667 0.00 0.00 0.00 2.24
290 291 5.221843 GGTAGCATGATAGGAACCCAATGTA 60.222 44.000 0.00 0.00 0.00 2.29
292 293 4.074970 GGTAGCATGATAGGAACCCAATG 58.925 47.826 0.00 0.00 0.00 2.82
295 296 1.691976 CGGTAGCATGATAGGAACCCA 59.308 52.381 0.00 0.00 0.00 4.51
298 299 3.746045 TTCCGGTAGCATGATAGGAAC 57.254 47.619 7.43 0.00 33.39 3.62
301 302 4.336889 TCTTTTCCGGTAGCATGATAGG 57.663 45.455 0.00 0.00 0.00 2.57
303 304 4.262894 GGGATCTTTTCCGGTAGCATGATA 60.263 45.833 0.00 0.00 46.52 2.15
304 305 3.496870 GGGATCTTTTCCGGTAGCATGAT 60.497 47.826 0.00 0.00 46.52 2.45
305 306 2.158813 GGGATCTTTTCCGGTAGCATGA 60.159 50.000 0.00 0.00 46.52 3.07
306 307 2.222027 GGGATCTTTTCCGGTAGCATG 58.778 52.381 0.00 0.00 46.52 4.06
307 308 1.843851 TGGGATCTTTTCCGGTAGCAT 59.156 47.619 0.00 0.00 46.52 3.79
308 309 1.065709 GTGGGATCTTTTCCGGTAGCA 60.066 52.381 0.00 0.00 46.52 3.49
309 310 1.664873 GTGGGATCTTTTCCGGTAGC 58.335 55.000 0.00 0.00 46.52 3.58
310 311 1.838077 AGGTGGGATCTTTTCCGGTAG 59.162 52.381 0.00 0.00 46.52 3.18
311 312 1.961133 AGGTGGGATCTTTTCCGGTA 58.039 50.000 0.00 0.00 46.52 4.02
312 313 1.073098 AAGGTGGGATCTTTTCCGGT 58.927 50.000 0.00 0.00 46.52 5.28
313 314 1.463674 CAAGGTGGGATCTTTTCCGG 58.536 55.000 0.00 0.00 46.52 5.14
412 432 6.751514 AAATTATGACCAACATACGCAAGA 57.248 33.333 0.00 0.00 40.62 3.02
413 433 7.810766 AAAAATTATGACCAACATACGCAAG 57.189 32.000 0.00 0.00 40.62 4.01
414 434 9.509855 GATAAAAATTATGACCAACATACGCAA 57.490 29.630 0.00 0.00 40.62 4.85
415 435 8.678199 TGATAAAAATTATGACCAACATACGCA 58.322 29.630 0.00 0.00 40.62 5.24
416 436 9.677567 ATGATAAAAATTATGACCAACATACGC 57.322 29.630 0.00 0.00 40.62 4.42
479 499 7.610305 TCTGGAATGGAGGATGTAAAACTTTAC 59.390 37.037 5.56 5.56 42.51 2.01
748 788 6.074142 ACTCCGTTCGTTTTACAATGTTACTC 60.074 38.462 0.00 0.00 0.00 2.59
803 850 5.105106 TGAGCATATTAGTTGGGACGAAAGA 60.105 40.000 0.00 0.00 0.00 2.52
807 854 3.449377 TGTGAGCATATTAGTTGGGACGA 59.551 43.478 0.00 0.00 0.00 4.20
809 856 7.161404 TGATATGTGAGCATATTAGTTGGGAC 58.839 38.462 2.20 0.00 45.45 4.46
843 890 7.391620 TCCCCGGTCTCATAATATAAAATGTC 58.608 38.462 0.00 0.00 0.00 3.06
845 892 7.394816 ACTCCCCGGTCTCATAATATAAAATG 58.605 38.462 0.00 0.00 0.00 2.32
848 895 7.243824 AGTACTCCCCGGTCTCATAATATAAA 58.756 38.462 0.00 0.00 0.00 1.40
863 910 6.563222 TTTGTTTGAAAATAGTACTCCCCG 57.437 37.500 0.00 0.00 0.00 5.73
865 912 9.678941 CTTCTTTTGTTTGAAAATAGTACTCCC 57.321 33.333 0.00 0.00 0.00 4.30
879 926 8.686334 AGGCCATATATGTACTTCTTTTGTTTG 58.314 33.333 5.01 0.00 0.00 2.93
883 930 8.993121 CACTAGGCCATATATGTACTTCTTTTG 58.007 37.037 5.01 0.00 0.00 2.44
887 934 6.151312 CGACACTAGGCCATATATGTACTTCT 59.849 42.308 5.01 4.44 0.00 2.85
888 935 6.150641 TCGACACTAGGCCATATATGTACTTC 59.849 42.308 5.01 3.53 0.00 3.01
889 936 6.008331 TCGACACTAGGCCATATATGTACTT 58.992 40.000 5.01 2.92 0.00 2.24
943 995 8.150945 AGCAGACACTTAATAGAAGAGAAACAA 58.849 33.333 0.00 0.00 0.00 2.83
944 996 7.600375 CAGCAGACACTTAATAGAAGAGAAACA 59.400 37.037 0.00 0.00 0.00 2.83
959 1011 1.097547 GTGTGGCACAGCAGACACTT 61.098 55.000 22.75 0.00 41.80 3.16
967 1019 4.666532 GTTCGCGTGTGGCACAGC 62.667 66.667 22.75 23.17 41.80 4.40
975 1034 1.351707 CTTTGTGCAGTTCGCGTGT 59.648 52.632 5.77 0.00 46.97 4.49
1026 1093 1.070445 GACGAGCCATGCTAGCCAT 59.930 57.895 13.29 2.94 39.88 4.40
1054 1121 4.753186 AGGTTGAGAAGGTAGAAGGAGAA 58.247 43.478 0.00 0.00 0.00 2.87
1198 1268 0.977627 AGGCGGATGGACATGAGTGA 60.978 55.000 0.00 0.00 0.00 3.41
1200 1270 1.826024 GAGGCGGATGGACATGAGT 59.174 57.895 0.00 0.00 0.00 3.41
1337 1407 3.391382 GGGACAGCCAGGCTACGT 61.391 66.667 15.64 9.22 36.40 3.57
1631 1705 2.941583 GGGTCCCCAAGCCTTCCT 60.942 66.667 0.00 0.00 42.62 3.36
1898 1972 4.695217 TCGCAAAGAAGAAAGTTGTTGT 57.305 36.364 0.00 0.00 0.00 3.32
1921 1995 0.751643 AAACTGAAACGCCAGCTGGT 60.752 50.000 32.81 14.35 37.68 4.00
1922 1996 0.385390 AAAACTGAAACGCCAGCTGG 59.615 50.000 29.34 29.34 37.68 4.85
2200 2385 8.128582 CCACATGTAAATTTTGTCTACGCATAT 58.871 33.333 0.00 0.00 0.00 1.78
2201 2386 7.334671 TCCACATGTAAATTTTGTCTACGCATA 59.665 33.333 0.00 0.00 0.00 3.14
2202 2387 6.150307 TCCACATGTAAATTTTGTCTACGCAT 59.850 34.615 0.00 0.00 0.00 4.73
2203 2388 5.470437 TCCACATGTAAATTTTGTCTACGCA 59.530 36.000 0.00 0.00 0.00 5.24
2236 2421 7.389232 TCCATAGTAGCAGATGATTAACATGG 58.611 38.462 0.00 0.00 39.56 3.66
2251 2436 3.491104 CCAAGGTTCGTCTCCATAGTAGC 60.491 52.174 0.00 0.00 0.00 3.58
2265 2450 2.791655 ACCCTTTCGATTCCAAGGTTC 58.208 47.619 11.68 0.00 38.37 3.62
2405 2590 2.621407 CCTACTGCAACATTGACCCCAT 60.621 50.000 0.00 0.00 0.00 4.00
2423 2608 4.838403 TCTTCATCAATACCCCCATCCTA 58.162 43.478 0.00 0.00 0.00 2.94
2627 2812 1.749063 TCTCAACATACGCATCTCCGT 59.251 47.619 0.00 0.00 44.62 4.69
3044 3231 6.037610 ACAACAACAACAACAACAACAACAAT 59.962 30.769 0.00 0.00 0.00 2.71
3075 3274 5.006165 ACAACAACAACAACAACAACAACAG 59.994 36.000 0.00 0.00 0.00 3.16
3105 3304 7.966812 TGGTGTTATTGATAGTAGCAGATGAT 58.033 34.615 0.00 0.00 0.00 2.45
3107 3306 8.437360 TTTGGTGTTATTGATAGTAGCAGATG 57.563 34.615 0.00 0.00 0.00 2.90
3108 3307 9.060347 CATTTGGTGTTATTGATAGTAGCAGAT 57.940 33.333 0.00 0.00 0.00 2.90
3109 3308 8.046708 ACATTTGGTGTTATTGATAGTAGCAGA 58.953 33.333 0.00 0.00 38.01 4.26
3110 3309 8.213518 ACATTTGGTGTTATTGATAGTAGCAG 57.786 34.615 0.00 0.00 38.01 4.24
3148 4232 6.149973 AGCTACGGGGTACAAAATTTTCTAAC 59.850 38.462 0.00 0.00 0.00 2.34
3157 4241 1.276989 CCTGAGCTACGGGGTACAAAA 59.723 52.381 0.00 0.00 41.14 2.44
3190 4277 7.412853 GTGACATCATACTTATTTGGCTTCTG 58.587 38.462 0.00 0.00 0.00 3.02
3192 4279 6.318648 TGGTGACATCATACTTATTTGGCTTC 59.681 38.462 0.00 0.00 33.40 3.86
3209 4296 6.548321 TCAAAGGGTATTAAAGTGGTGACAT 58.452 36.000 0.00 0.00 46.14 3.06
3220 4307 8.044908 GTCCACATCTAGTTCAAAGGGTATTAA 58.955 37.037 0.00 0.00 0.00 1.40
3376 4504 6.321181 GCTCAAAGGATAAAATGGACACCATA 59.679 38.462 3.64 0.00 44.40 2.74
3418 4546 9.720769 CCCTTTTTCAGTAAAGTTCTAGATACA 57.279 33.333 0.00 0.00 34.11 2.29
3419 4547 9.722184 ACCCTTTTTCAGTAAAGTTCTAGATAC 57.278 33.333 0.00 0.00 34.11 2.24
3421 4549 9.642343 AAACCCTTTTTCAGTAAAGTTCTAGAT 57.358 29.630 0.00 0.00 34.11 1.98
3422 4550 9.117183 GAAACCCTTTTTCAGTAAAGTTCTAGA 57.883 33.333 0.00 0.00 34.11 2.43
3423 4551 9.121658 AGAAACCCTTTTTCAGTAAAGTTCTAG 57.878 33.333 0.00 0.00 31.57 2.43
3424 4552 9.117183 GAGAAACCCTTTTTCAGTAAAGTTCTA 57.883 33.333 0.00 0.00 32.58 2.10
3425 4553 7.068348 GGAGAAACCCTTTTTCAGTAAAGTTCT 59.932 37.037 0.00 0.00 33.90 3.01
3426 4554 7.201145 GGAGAAACCCTTTTTCAGTAAAGTTC 58.799 38.462 0.00 0.00 34.11 3.01
3427 4555 7.108841 GGAGAAACCCTTTTTCAGTAAAGTT 57.891 36.000 0.00 0.00 34.11 2.66
3428 4556 6.710597 GGAGAAACCCTTTTTCAGTAAAGT 57.289 37.500 0.00 0.00 34.11 2.66
3449 4577 2.588464 TTTGGAATACAAAGCGGGGA 57.412 45.000 0.00 0.00 43.81 4.81
3474 4602 2.231964 AGCGTTCCTTGTATCGGTGTTA 59.768 45.455 0.00 0.00 32.99 2.41
3547 4681 3.043713 CGCTTTGTCGAGCTGCCA 61.044 61.111 0.00 0.00 40.52 4.92
3633 4767 1.002430 TCTTAGAGGTGCTGCTTGGTG 59.998 52.381 0.00 0.00 0.00 4.17
3649 4783 1.217244 GGCGTCGCCTTCCTTCTTA 59.783 57.895 28.98 0.00 46.69 2.10
3675 4809 2.281484 GACAAGTCCGGGCAGCAA 60.281 61.111 9.71 0.00 0.00 3.91
3688 4822 1.294138 CGGCGAAACCCTAGGACAA 59.706 57.895 11.48 0.00 33.26 3.18
3916 5052 1.433053 CCTCGTGTTGGTGTTCGCAA 61.433 55.000 0.00 0.00 0.00 4.85
3981 5117 1.183030 TTCCCTCTCGTTCGGCTTCA 61.183 55.000 0.00 0.00 0.00 3.02
4239 7989 3.878667 CCCTTCGGGCCCCATCTC 61.879 72.222 18.66 0.00 35.35 2.75
4479 8231 1.590932 CTTCATCTTCCTCCATGCCG 58.409 55.000 0.00 0.00 0.00 5.69
4480 8232 1.478288 CCCTTCATCTTCCTCCATGCC 60.478 57.143 0.00 0.00 0.00 4.40
4481 8233 1.478288 CCCCTTCATCTTCCTCCATGC 60.478 57.143 0.00 0.00 0.00 4.06
4482 8234 1.144503 CCCCCTTCATCTTCCTCCATG 59.855 57.143 0.00 0.00 0.00 3.66
4483 8235 1.011293 TCCCCCTTCATCTTCCTCCAT 59.989 52.381 0.00 0.00 0.00 3.41
4484 8236 0.421495 TCCCCCTTCATCTTCCTCCA 59.579 55.000 0.00 0.00 0.00 3.86
4485 8237 1.135960 CTCCCCCTTCATCTTCCTCC 58.864 60.000 0.00 0.00 0.00 4.30
4486 8238 1.135960 CCTCCCCCTTCATCTTCCTC 58.864 60.000 0.00 0.00 0.00 3.71
4487 8239 0.990818 GCCTCCCCCTTCATCTTCCT 60.991 60.000 0.00 0.00 0.00 3.36
4488 8240 1.534203 GCCTCCCCCTTCATCTTCC 59.466 63.158 0.00 0.00 0.00 3.46
4489 8241 1.147153 CGCCTCCCCCTTCATCTTC 59.853 63.158 0.00 0.00 0.00 2.87
4490 8242 3.049080 GCGCCTCCCCCTTCATCTT 62.049 63.158 0.00 0.00 0.00 2.40
4491 8243 3.483869 GCGCCTCCCCCTTCATCT 61.484 66.667 0.00 0.00 0.00 2.90
4492 8244 4.918201 CGCGCCTCCCCCTTCATC 62.918 72.222 0.00 0.00 0.00 2.92
4555 8307 3.213402 CTCCTCTCTCCCGCGACC 61.213 72.222 8.23 0.00 0.00 4.79
4556 8308 3.894947 GCTCCTCTCTCCCGCGAC 61.895 72.222 8.23 0.00 0.00 5.19
4560 8312 3.591835 GAGCGCTCCTCTCTCCCG 61.592 72.222 27.22 0.00 37.60 5.14
4567 8319 1.195674 GAAACAACAAGAGCGCTCCTC 59.804 52.381 32.94 10.72 41.07 3.71
4568 8320 1.202698 AGAAACAACAAGAGCGCTCCT 60.203 47.619 32.94 19.32 0.00 3.69
4569 8321 1.069636 CAGAAACAACAAGAGCGCTCC 60.070 52.381 32.94 15.76 0.00 4.70
4570 8322 1.867233 TCAGAAACAACAAGAGCGCTC 59.133 47.619 30.01 30.01 0.00 5.03
4571 8323 1.953559 TCAGAAACAACAAGAGCGCT 58.046 45.000 11.27 11.27 0.00 5.92
4572 8324 2.755836 TTCAGAAACAACAAGAGCGC 57.244 45.000 0.00 0.00 0.00 5.92
4573 8325 4.521943 CTCTTTCAGAAACAACAAGAGCG 58.478 43.478 0.00 0.00 35.41 5.03
4575 8327 5.295292 TGAGCTCTTTCAGAAACAACAAGAG 59.705 40.000 16.19 3.34 42.28 2.85
4576 8328 5.185454 TGAGCTCTTTCAGAAACAACAAGA 58.815 37.500 16.19 0.00 0.00 3.02
4577 8329 5.490139 TGAGCTCTTTCAGAAACAACAAG 57.510 39.130 16.19 0.00 0.00 3.16
4578 8330 7.663081 AGATATGAGCTCTTTCAGAAACAACAA 59.337 33.333 16.19 0.00 0.00 2.83
4579 8331 7.164122 AGATATGAGCTCTTTCAGAAACAACA 58.836 34.615 16.19 0.00 0.00 3.33
4580 8332 7.608308 AGATATGAGCTCTTTCAGAAACAAC 57.392 36.000 16.19 0.00 0.00 3.32
4581 8333 8.753133 TCTAGATATGAGCTCTTTCAGAAACAA 58.247 33.333 16.19 0.00 0.00 2.83
4582 8334 8.298729 TCTAGATATGAGCTCTTTCAGAAACA 57.701 34.615 16.19 0.00 0.00 2.83
4583 8335 9.248291 CTTCTAGATATGAGCTCTTTCAGAAAC 57.752 37.037 16.19 0.00 0.00 2.78
4584 8336 8.976353 ACTTCTAGATATGAGCTCTTTCAGAAA 58.024 33.333 16.19 0.00 0.00 2.52
4585 8337 8.532186 ACTTCTAGATATGAGCTCTTTCAGAA 57.468 34.615 16.19 13.68 0.00 3.02
4586 8338 8.532186 AACTTCTAGATATGAGCTCTTTCAGA 57.468 34.615 16.19 7.19 0.00 3.27
4594 8346 9.810545 GTGTTTCTAAACTTCTAGATATGAGCT 57.189 33.333 7.09 0.00 39.59 4.09
4595 8347 9.587772 TGTGTTTCTAAACTTCTAGATATGAGC 57.412 33.333 7.09 0.00 39.59 4.26
4665 8419 3.053831 AGTGTTCATGTTTCCGGTAGG 57.946 47.619 0.00 0.00 39.46 3.18
4894 8690 2.799412 TCAACAAAAATGCAATGCGACC 59.201 40.909 0.00 0.00 0.00 4.79
4964 8761 5.716703 CCCAATATTTCCCTTTTCACTCACT 59.283 40.000 0.00 0.00 0.00 3.41
5071 8873 9.533253 TGCGTTACTATATGGATGAATCATATG 57.467 33.333 0.00 0.00 38.05 1.78
5234 9068 3.138304 CACTACCAGCAGCAAACAAGTA 58.862 45.455 0.00 0.00 0.00 2.24
5333 9167 3.403038 AGACGATAACTTGTGCAAGCTT 58.597 40.909 11.43 0.00 41.99 3.74
5352 9186 7.601886 CAGCTTCTTCAATGTTTCTTCTAGAGA 59.398 37.037 0.00 0.00 0.00 3.10
5386 9220 1.202698 GCTTGGAGATAGGGCAATCGT 60.203 52.381 0.00 0.00 0.00 3.73
5832 9666 7.294584 TGGTTCCTTTTCTTTTCCTCTAATCA 58.705 34.615 0.00 0.00 0.00 2.57
5862 9698 7.660208 ACATTAACGACATCTAAACCACTCTTT 59.340 33.333 0.00 0.00 0.00 2.52
5956 9792 4.532834 AGGTGCAAAAGGTTTGAACTCTA 58.467 39.130 10.83 0.00 0.00 2.43
6099 9970 4.036734 TCTGAAAATGTGTCAGTTTGGCTC 59.963 41.667 0.14 0.00 42.63 4.70
6101 9972 4.305989 TCTGAAAATGTGTCAGTTTGGC 57.694 40.909 0.14 0.00 42.63 4.52
6278 10865 6.115446 TCCAAAAGCATCATAGTCTAGTTGG 58.885 40.000 0.00 0.00 34.43 3.77
6313 10900 6.296026 AGCACTTTGACCTTGTGTATTTCTA 58.704 36.000 0.00 0.00 34.52 2.10
6516 11113 5.300752 TGTTGGTGTTTTTGATTGTTGTGT 58.699 33.333 0.00 0.00 0.00 3.72
6528 11125 1.198713 TGGTGGCATGTTGGTGTTTT 58.801 45.000 0.00 0.00 0.00 2.43
6623 11220 5.359009 CCACAGATTGCCTCTCAACAATAAT 59.641 40.000 0.00 0.00 36.65 1.28
6725 11322 2.952310 GGTAATTCAGGGCTAAAGCAGG 59.048 50.000 4.07 0.00 44.36 4.85
6729 11326 6.263168 CCATGTAAGGTAATTCAGGGCTAAAG 59.737 42.308 0.00 0.00 0.00 1.85
6738 11335 6.575244 ATGGACTCCATGTAAGGTAATTCA 57.425 37.500 9.99 0.00 43.39 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.