Multiple sequence alignment - TraesCS7D01G415500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G415500 chr7D 100.000 4253 0 0 1 4253 534338442 534334190 0.000000e+00 7854.0
1 TraesCS7D01G415500 chr7D 100.000 31 0 0 17 47 631763041 631763011 1.650000e-04 58.4
2 TraesCS7D01G415500 chr2B 91.171 3919 260 42 401 4252 765923951 765920052 0.000000e+00 5241.0
3 TraesCS7D01G415500 chr2B 81.019 216 34 5 41 251 766012206 766011993 9.460000e-37 165.0
4 TraesCS7D01G415500 chr2B 100.000 28 0 0 17 44 105847995 105847968 8.000000e-03 52.8
5 TraesCS7D01G415500 chr2D 87.883 2253 195 43 2056 4253 624096792 624094563 0.000000e+00 2577.0
6 TraesCS7D01G415500 chr2D 91.885 764 40 12 416 1165 624098639 624097884 0.000000e+00 1048.0
7 TraesCS7D01G415500 chr2D 86.581 626 47 18 1462 2057 624097492 624096874 0.000000e+00 656.0
8 TraesCS7D01G415500 chr2D 89.005 191 16 5 41 231 624183383 624183198 9.200000e-57 231.0
9 TraesCS7D01G415500 chr2D 80.569 211 32 5 48 251 624193029 624192821 2.050000e-33 154.0
10 TraesCS7D01G415500 chr2A 91.424 1889 132 21 2385 4253 755365810 755363932 0.000000e+00 2564.0
11 TraesCS7D01G415500 chr2A 90.457 1006 62 16 1410 2387 755366890 755365891 0.000000e+00 1295.0
12 TraesCS7D01G415500 chr2A 92.966 853 41 9 442 1285 755367835 755366993 0.000000e+00 1225.0
13 TraesCS7D01G415500 chr2A 81.761 795 105 22 2775 3554 755045619 755046388 2.790000e-176 628.0
14 TraesCS7D01G415500 chr2A 86.971 307 35 4 3547 3848 755047823 755048129 1.460000e-89 340.0
15 TraesCS7D01G415500 chr2A 84.444 135 17 4 71 203 755558374 755558242 3.450000e-26 130.0
16 TraesCS7D01G415500 chr2A 89.231 65 3 1 382 442 755399734 755399670 1.270000e-10 78.7
17 TraesCS7D01G415500 chr4B 79.557 768 97 34 1497 2247 378001367 378002091 1.060000e-135 494.0
18 TraesCS7D01G415500 chr4B 79.501 761 98 31 1505 2250 14570284 14569567 4.940000e-134 488.0
19 TraesCS7D01G415500 chr4B 91.837 49 3 1 297 344 327542264 327542216 2.740000e-07 67.6
20 TraesCS7D01G415500 chr4B 100.000 31 0 0 17 47 586318965 586318995 1.650000e-04 58.4
21 TraesCS7D01G415500 chr4B 100.000 29 0 0 17 45 444919089 444919061 2.000000e-03 54.7
22 TraesCS7D01G415500 chr4B 96.970 33 0 1 17 49 505725673 505725642 2.000000e-03 54.7
23 TraesCS7D01G415500 chr6A 97.143 35 0 1 17 50 15642120 15642086 1.650000e-04 58.4
24 TraesCS7D01G415500 chr3B 100.000 29 0 0 17 45 790969108 790969080 2.000000e-03 54.7
25 TraesCS7D01G415500 chr1A 100.000 29 0 0 17 45 32273641 32273613 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G415500 chr7D 534334190 534338442 4252 True 7854.000000 7854 100.000000 1 4253 1 chr7D.!!$R1 4252
1 TraesCS7D01G415500 chr2B 765920052 765923951 3899 True 5241.000000 5241 91.171000 401 4252 1 chr2B.!!$R2 3851
2 TraesCS7D01G415500 chr2D 624094563 624098639 4076 True 1427.000000 2577 88.783000 416 4253 3 chr2D.!!$R3 3837
3 TraesCS7D01G415500 chr2A 755363932 755367835 3903 True 1694.666667 2564 91.615667 442 4253 3 chr2A.!!$R3 3811
4 TraesCS7D01G415500 chr2A 755045619 755048129 2510 False 484.000000 628 84.366000 2775 3848 2 chr2A.!!$F1 1073
5 TraesCS7D01G415500 chr4B 378001367 378002091 724 False 494.000000 494 79.557000 1497 2247 1 chr4B.!!$F1 750
6 TraesCS7D01G415500 chr4B 14569567 14570284 717 True 488.000000 488 79.501000 1505 2250 1 chr4B.!!$R1 745

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
275 276 0.035439 CGGACACCCAATGCCTAAGT 60.035 55.000 0.00 0.0 0.00 2.24 F
1488 1698 0.179045 AAGTGAAGTGGCGCAGAAGT 60.179 50.000 10.83 0.0 0.00 3.01 F
1614 1827 0.615850 TGGTAATGTGGCATGTCCGA 59.384 50.000 0.00 0.0 37.80 4.55 F
2851 3301 1.072965 AGAAGAAACCTGGCTGGAGTG 59.927 52.381 18.12 0.0 39.71 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1598 1811 0.809636 CGCTCGGACATGCCACATTA 60.810 55.000 0.0 0.0 35.94 1.90 R
3192 3655 1.146982 ACAAGCCCCATACAACAACCT 59.853 47.619 0.0 0.0 0.00 3.50 R
3193 3656 1.627864 ACAAGCCCCATACAACAACC 58.372 50.000 0.0 0.0 0.00 3.77 R
3726 5651 0.322008 GAAGAGCTGGGTTGGAGTGG 60.322 60.000 0.0 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.003355 TGGAAGGCAGAAAGCTCCG 60.003 57.895 0.00 0.00 39.74 4.63
19 20 2.402572 GGAAGGCAGAAAGCTCCGC 61.403 63.158 0.00 0.00 44.79 5.54
20 21 1.672356 GAAGGCAGAAAGCTCCGCA 60.672 57.895 0.00 0.00 44.79 5.69
21 22 1.642952 GAAGGCAGAAAGCTCCGCAG 61.643 60.000 0.00 0.00 44.79 5.18
46 47 4.634184 CGCGCAGGGTATTATCTAGTAT 57.366 45.455 8.75 0.00 34.98 2.12
47 48 4.995124 CGCGCAGGGTATTATCTAGTATT 58.005 43.478 8.75 0.00 34.98 1.89
48 49 5.408356 CGCGCAGGGTATTATCTAGTATTT 58.592 41.667 8.75 0.00 34.98 1.40
49 50 5.867716 CGCGCAGGGTATTATCTAGTATTTT 59.132 40.000 8.75 0.00 34.98 1.82
50 51 6.183360 CGCGCAGGGTATTATCTAGTATTTTG 60.183 42.308 8.75 0.00 34.98 2.44
51 52 6.649557 GCGCAGGGTATTATCTAGTATTTTGT 59.350 38.462 0.30 0.00 0.00 2.83
52 53 7.816031 GCGCAGGGTATTATCTAGTATTTTGTA 59.184 37.037 0.30 0.00 0.00 2.41
53 54 9.871238 CGCAGGGTATTATCTAGTATTTTGTAT 57.129 33.333 0.00 0.00 0.00 2.29
69 70 9.878599 GTATTTTGTATATTGTGATACAGTGGC 57.121 33.333 0.00 0.00 41.95 5.01
70 71 7.929941 TTTTGTATATTGTGATACAGTGGCA 57.070 32.000 0.00 0.00 41.95 4.92
71 72 8.518430 TTTTGTATATTGTGATACAGTGGCAT 57.482 30.769 0.00 0.00 41.95 4.40
72 73 8.518430 TTTGTATATTGTGATACAGTGGCATT 57.482 30.769 0.00 0.00 41.95 3.56
73 74 9.620259 TTTGTATATTGTGATACAGTGGCATTA 57.380 29.630 0.00 0.00 41.95 1.90
74 75 9.791801 TTGTATATTGTGATACAGTGGCATTAT 57.208 29.630 0.00 0.00 41.95 1.28
75 76 9.791801 TGTATATTGTGATACAGTGGCATTATT 57.208 29.630 0.00 0.00 37.38 1.40
78 79 5.833406 TGTGATACAGTGGCATTATTTGG 57.167 39.130 0.00 0.00 0.00 3.28
79 80 5.260424 TGTGATACAGTGGCATTATTTGGT 58.740 37.500 0.00 0.00 0.00 3.67
80 81 5.356751 TGTGATACAGTGGCATTATTTGGTC 59.643 40.000 0.00 0.00 0.00 4.02
81 82 5.356751 GTGATACAGTGGCATTATTTGGTCA 59.643 40.000 0.00 0.00 0.00 4.02
82 83 5.948758 TGATACAGTGGCATTATTTGGTCAA 59.051 36.000 0.00 0.00 0.00 3.18
83 84 6.435591 TGATACAGTGGCATTATTTGGTCAAA 59.564 34.615 0.00 0.00 34.46 2.69
84 85 5.743636 ACAGTGGCATTATTTGGTCAAAT 57.256 34.783 12.71 12.71 42.95 2.32
85 86 6.112927 ACAGTGGCATTATTTGGTCAAATT 57.887 33.333 13.24 0.00 40.99 1.82
86 87 7.238486 ACAGTGGCATTATTTGGTCAAATTA 57.762 32.000 13.24 6.01 40.99 1.40
87 88 7.322664 ACAGTGGCATTATTTGGTCAAATTAG 58.677 34.615 13.24 6.28 40.99 1.73
88 89 7.039082 ACAGTGGCATTATTTGGTCAAATTAGT 60.039 33.333 13.24 0.00 40.99 2.24
89 90 8.465999 CAGTGGCATTATTTGGTCAAATTAGTA 58.534 33.333 13.24 0.00 40.99 1.82
90 91 9.200817 AGTGGCATTATTTGGTCAAATTAGTAT 57.799 29.630 13.24 2.23 40.99 2.12
91 92 9.463443 GTGGCATTATTTGGTCAAATTAGTATC 57.537 33.333 13.24 2.78 40.99 2.24
92 93 8.349245 TGGCATTATTTGGTCAAATTAGTATCG 58.651 33.333 13.24 0.05 40.99 2.92
93 94 7.326063 GGCATTATTTGGTCAAATTAGTATCGC 59.674 37.037 13.24 7.70 40.99 4.58
94 95 8.076178 GCATTATTTGGTCAAATTAGTATCGCT 58.924 33.333 13.24 0.00 40.99 4.93
95 96 9.599322 CATTATTTGGTCAAATTAGTATCGCTC 57.401 33.333 13.24 0.00 40.99 5.03
96 97 5.712217 TTTGGTCAAATTAGTATCGCTCG 57.288 39.130 0.00 0.00 0.00 5.03
97 98 3.713288 TGGTCAAATTAGTATCGCTCGG 58.287 45.455 0.00 0.00 0.00 4.63
98 99 3.131577 TGGTCAAATTAGTATCGCTCGGT 59.868 43.478 0.00 0.00 0.00 4.69
99 100 3.489785 GGTCAAATTAGTATCGCTCGGTG 59.510 47.826 0.00 0.00 0.00 4.94
100 101 4.110482 GTCAAATTAGTATCGCTCGGTGT 58.890 43.478 0.00 0.00 0.00 4.16
101 102 4.565564 GTCAAATTAGTATCGCTCGGTGTT 59.434 41.667 0.00 0.00 0.00 3.32
102 103 4.565166 TCAAATTAGTATCGCTCGGTGTTG 59.435 41.667 0.00 0.00 0.00 3.33
103 104 1.917273 TTAGTATCGCTCGGTGTTGC 58.083 50.000 0.00 0.00 0.00 4.17
104 105 0.812549 TAGTATCGCTCGGTGTTGCA 59.187 50.000 0.00 0.00 0.00 4.08
105 106 0.175760 AGTATCGCTCGGTGTTGCAT 59.824 50.000 0.00 0.00 0.00 3.96
106 107 1.006832 GTATCGCTCGGTGTTGCATT 58.993 50.000 0.00 0.00 0.00 3.56
107 108 1.004927 GTATCGCTCGGTGTTGCATTC 60.005 52.381 0.00 0.00 0.00 2.67
108 109 0.391661 ATCGCTCGGTGTTGCATTCT 60.392 50.000 0.00 0.00 0.00 2.40
109 110 0.602638 TCGCTCGGTGTTGCATTCTT 60.603 50.000 0.00 0.00 0.00 2.52
110 111 0.453282 CGCTCGGTGTTGCATTCTTG 60.453 55.000 0.00 0.00 0.00 3.02
111 112 0.593128 GCTCGGTGTTGCATTCTTGT 59.407 50.000 0.00 0.00 0.00 3.16
112 113 1.001378 GCTCGGTGTTGCATTCTTGTT 60.001 47.619 0.00 0.00 0.00 2.83
113 114 2.543653 GCTCGGTGTTGCATTCTTGTTT 60.544 45.455 0.00 0.00 0.00 2.83
114 115 3.705604 CTCGGTGTTGCATTCTTGTTTT 58.294 40.909 0.00 0.00 0.00 2.43
115 116 3.443037 TCGGTGTTGCATTCTTGTTTTG 58.557 40.909 0.00 0.00 0.00 2.44
116 117 2.033832 CGGTGTTGCATTCTTGTTTTGC 60.034 45.455 0.00 0.00 36.91 3.68
117 118 2.935201 GGTGTTGCATTCTTGTTTTGCA 59.065 40.909 0.00 0.00 44.12 4.08
118 119 3.560896 GGTGTTGCATTCTTGTTTTGCAT 59.439 39.130 0.00 0.00 45.04 3.96
119 120 4.520078 GTGTTGCATTCTTGTTTTGCATG 58.480 39.130 0.00 0.00 45.04 4.06
120 121 4.034279 GTGTTGCATTCTTGTTTTGCATGT 59.966 37.500 0.00 0.00 45.04 3.21
121 122 4.634883 TGTTGCATTCTTGTTTTGCATGTT 59.365 33.333 0.00 0.00 45.04 2.71
122 123 4.797693 TGCATTCTTGTTTTGCATGTTG 57.202 36.364 0.00 0.00 41.18 3.33
123 124 4.190001 TGCATTCTTGTTTTGCATGTTGT 58.810 34.783 0.00 0.00 41.18 3.32
124 125 4.634883 TGCATTCTTGTTTTGCATGTTGTT 59.365 33.333 0.00 0.00 41.18 2.83
125 126 4.965158 GCATTCTTGTTTTGCATGTTGTTG 59.035 37.500 0.00 0.00 36.40 3.33
126 127 4.596801 TTCTTGTTTTGCATGTTGTTGC 57.403 36.364 0.00 0.00 43.07 4.17
133 134 1.857364 GCATGTTGTTGCAGCAAGC 59.143 52.632 16.90 12.76 42.31 4.01
134 135 0.599204 GCATGTTGTTGCAGCAAGCT 60.599 50.000 16.90 4.00 45.94 3.74
135 136 1.136690 CATGTTGTTGCAGCAAGCTG 58.863 50.000 16.90 17.35 45.94 4.24
148 149 2.393764 GCAAGCTGCGTTTGTTATTGT 58.606 42.857 0.00 0.00 31.71 2.71
149 150 2.153627 GCAAGCTGCGTTTGTTATTGTG 59.846 45.455 0.00 0.00 31.71 3.33
150 151 3.371168 CAAGCTGCGTTTGTTATTGTGT 58.629 40.909 0.00 0.00 0.00 3.72
151 152 3.708563 AGCTGCGTTTGTTATTGTGTT 57.291 38.095 0.00 0.00 0.00 3.32
152 153 4.040445 AGCTGCGTTTGTTATTGTGTTT 57.960 36.364 0.00 0.00 0.00 2.83
153 154 4.041723 AGCTGCGTTTGTTATTGTGTTTC 58.958 39.130 0.00 0.00 0.00 2.78
154 155 3.181575 GCTGCGTTTGTTATTGTGTTTCC 59.818 43.478 0.00 0.00 0.00 3.13
155 156 3.707793 TGCGTTTGTTATTGTGTTTCCC 58.292 40.909 0.00 0.00 0.00 3.97
156 157 3.381908 TGCGTTTGTTATTGTGTTTCCCT 59.618 39.130 0.00 0.00 0.00 4.20
157 158 3.978855 GCGTTTGTTATTGTGTTTCCCTC 59.021 43.478 0.00 0.00 0.00 4.30
158 159 4.498345 GCGTTTGTTATTGTGTTTCCCTCA 60.498 41.667 0.00 0.00 0.00 3.86
159 160 5.768317 CGTTTGTTATTGTGTTTCCCTCAT 58.232 37.500 0.00 0.00 0.00 2.90
160 161 6.212955 CGTTTGTTATTGTGTTTCCCTCATT 58.787 36.000 0.00 0.00 0.00 2.57
161 162 6.699642 CGTTTGTTATTGTGTTTCCCTCATTT 59.300 34.615 0.00 0.00 0.00 2.32
162 163 7.096230 CGTTTGTTATTGTGTTTCCCTCATTTC 60.096 37.037 0.00 0.00 0.00 2.17
163 164 7.595819 TTGTTATTGTGTTTCCCTCATTTCT 57.404 32.000 0.00 0.00 0.00 2.52
164 165 7.214467 TGTTATTGTGTTTCCCTCATTTCTC 57.786 36.000 0.00 0.00 0.00 2.87
165 166 6.072728 TGTTATTGTGTTTCCCTCATTTCTCG 60.073 38.462 0.00 0.00 0.00 4.04
166 167 2.151202 TGTGTTTCCCTCATTTCTCGC 58.849 47.619 0.00 0.00 0.00 5.03
167 168 2.151202 GTGTTTCCCTCATTTCTCGCA 58.849 47.619 0.00 0.00 0.00 5.10
168 169 2.749621 GTGTTTCCCTCATTTCTCGCAT 59.250 45.455 0.00 0.00 0.00 4.73
169 170 3.191371 GTGTTTCCCTCATTTCTCGCATT 59.809 43.478 0.00 0.00 0.00 3.56
170 171 3.440173 TGTTTCCCTCATTTCTCGCATTC 59.560 43.478 0.00 0.00 0.00 2.67
171 172 1.939974 TCCCTCATTTCTCGCATTCG 58.060 50.000 0.00 0.00 0.00 3.34
172 173 1.480545 TCCCTCATTTCTCGCATTCGA 59.519 47.619 0.00 0.00 43.28 3.71
173 174 2.103094 TCCCTCATTTCTCGCATTCGAT 59.897 45.455 0.00 0.00 44.56 3.59
174 175 2.222678 CCCTCATTTCTCGCATTCGATG 59.777 50.000 0.00 0.00 44.56 3.84
175 176 2.222678 CCTCATTTCTCGCATTCGATGG 59.777 50.000 0.00 0.00 44.56 3.51
176 177 3.126073 CTCATTTCTCGCATTCGATGGA 58.874 45.455 0.00 0.00 44.56 3.41
177 178 3.530535 TCATTTCTCGCATTCGATGGAA 58.469 40.909 0.00 0.00 44.56 3.53
178 179 3.938334 TCATTTCTCGCATTCGATGGAAA 59.062 39.130 5.05 5.05 44.56 3.13
179 180 4.394610 TCATTTCTCGCATTCGATGGAAAA 59.605 37.500 6.34 0.00 44.56 2.29
180 181 3.740044 TTCTCGCATTCGATGGAAAAC 57.260 42.857 0.00 0.00 44.56 2.43
181 182 2.972625 TCTCGCATTCGATGGAAAACT 58.027 42.857 0.00 0.00 44.56 2.66
182 183 2.930040 TCTCGCATTCGATGGAAAACTC 59.070 45.455 0.00 0.00 44.56 3.01
183 184 2.672874 CTCGCATTCGATGGAAAACTCA 59.327 45.455 0.00 0.00 44.56 3.41
184 185 3.070748 TCGCATTCGATGGAAAACTCAA 58.929 40.909 0.00 0.00 40.21 3.02
185 186 3.689161 TCGCATTCGATGGAAAACTCAAT 59.311 39.130 0.00 0.00 40.21 2.57
186 187 4.031028 CGCATTCGATGGAAAACTCAATC 58.969 43.478 0.00 0.00 38.10 2.67
187 188 4.354587 GCATTCGATGGAAAACTCAATCC 58.645 43.478 0.00 0.00 35.40 3.01
194 195 4.935352 TGGAAAACTCAATCCAACAAGG 57.065 40.909 0.00 0.00 42.61 3.61
195 196 3.640967 TGGAAAACTCAATCCAACAAGGG 59.359 43.478 0.00 0.00 42.61 3.95
196 197 3.895041 GGAAAACTCAATCCAACAAGGGA 59.105 43.478 0.00 0.00 42.21 4.20
198 199 5.336770 GGAAAACTCAATCCAACAAGGGATC 60.337 44.000 0.00 0.00 46.96 3.36
199 200 4.387026 AACTCAATCCAACAAGGGATCA 57.613 40.909 0.00 0.00 46.96 2.92
200 201 4.387026 ACTCAATCCAACAAGGGATCAA 57.613 40.909 0.00 0.00 46.96 2.57
201 202 4.739793 ACTCAATCCAACAAGGGATCAAA 58.260 39.130 0.00 0.00 46.96 2.69
202 203 5.147032 ACTCAATCCAACAAGGGATCAAAA 58.853 37.500 0.00 0.00 46.96 2.44
203 204 5.011023 ACTCAATCCAACAAGGGATCAAAAC 59.989 40.000 0.00 0.00 46.96 2.43
204 205 4.283212 TCAATCCAACAAGGGATCAAAACC 59.717 41.667 0.00 0.00 46.96 3.27
205 206 3.173151 ATCCAACAAGGGATCAAAACCC 58.827 45.455 0.00 0.00 44.40 4.11
213 214 2.656002 GGGATCAAAACCCTTCTAGGC 58.344 52.381 0.00 0.00 43.65 3.93
214 215 2.242452 GGGATCAAAACCCTTCTAGGCT 59.758 50.000 0.00 0.00 43.65 4.58
215 216 3.546724 GGATCAAAACCCTTCTAGGCTC 58.453 50.000 0.00 0.00 32.73 4.70
216 217 3.546724 GATCAAAACCCTTCTAGGCTCC 58.453 50.000 0.00 0.00 32.73 4.70
217 218 2.344592 TCAAAACCCTTCTAGGCTCCA 58.655 47.619 0.00 0.00 32.73 3.86
218 219 2.919602 TCAAAACCCTTCTAGGCTCCAT 59.080 45.455 0.00 0.00 32.73 3.41
219 220 3.333680 TCAAAACCCTTCTAGGCTCCATT 59.666 43.478 0.00 0.00 32.73 3.16
220 221 4.089361 CAAAACCCTTCTAGGCTCCATTT 58.911 43.478 0.00 0.00 32.73 2.32
221 222 3.372440 AACCCTTCTAGGCTCCATTTG 57.628 47.619 0.00 0.00 32.73 2.32
222 223 2.279173 ACCCTTCTAGGCTCCATTTGT 58.721 47.619 0.00 0.00 32.73 2.83
223 224 2.649816 ACCCTTCTAGGCTCCATTTGTT 59.350 45.455 0.00 0.00 32.73 2.83
224 225 3.076032 ACCCTTCTAGGCTCCATTTGTTT 59.924 43.478 0.00 0.00 32.73 2.83
225 226 4.089361 CCCTTCTAGGCTCCATTTGTTTT 58.911 43.478 0.00 0.00 32.73 2.43
226 227 4.082026 CCCTTCTAGGCTCCATTTGTTTTG 60.082 45.833 0.00 0.00 32.73 2.44
227 228 4.488879 CTTCTAGGCTCCATTTGTTTTGC 58.511 43.478 0.00 0.00 0.00 3.68
228 229 3.766545 TCTAGGCTCCATTTGTTTTGCT 58.233 40.909 0.00 0.00 0.00 3.91
229 230 4.151883 TCTAGGCTCCATTTGTTTTGCTT 58.848 39.130 0.00 0.00 0.00 3.91
230 231 3.116079 AGGCTCCATTTGTTTTGCTTG 57.884 42.857 0.00 0.00 0.00 4.01
231 232 1.532437 GGCTCCATTTGTTTTGCTTGC 59.468 47.619 0.00 0.00 0.00 4.01
232 233 2.211806 GCTCCATTTGTTTTGCTTGCA 58.788 42.857 0.00 0.00 0.00 4.08
233 234 2.613133 GCTCCATTTGTTTTGCTTGCAA 59.387 40.909 3.70 3.70 0.00 4.08
234 235 3.065095 GCTCCATTTGTTTTGCTTGCAAA 59.935 39.130 15.66 15.66 36.68 3.68
235 236 4.438472 GCTCCATTTGTTTTGCTTGCAAAA 60.438 37.500 24.07 24.07 36.00 2.44
236 237 5.633830 TCCATTTGTTTTGCTTGCAAAAA 57.366 30.435 27.81 17.03 36.04 1.94
237 238 5.638783 TCCATTTGTTTTGCTTGCAAAAAG 58.361 33.333 27.81 17.37 36.04 2.27
238 239 5.182760 TCCATTTGTTTTGCTTGCAAAAAGT 59.817 32.000 27.81 12.78 36.04 2.66
239 240 5.286558 CCATTTGTTTTGCTTGCAAAAAGTG 59.713 36.000 27.81 20.68 36.04 3.16
240 241 5.429957 TTTGTTTTGCTTGCAAAAAGTGT 57.570 30.435 27.81 0.00 36.04 3.55
241 242 4.401525 TGTTTTGCTTGCAAAAAGTGTG 57.598 36.364 27.81 0.00 36.04 3.82
242 243 3.162831 GTTTTGCTTGCAAAAAGTGTGC 58.837 40.909 27.81 14.96 42.55 4.57
243 244 1.367659 TTGCTTGCAAAAAGTGTGCC 58.632 45.000 5.49 0.00 41.49 5.01
244 245 0.461693 TGCTTGCAAAAAGTGTGCCC 60.462 50.000 0.00 0.00 41.49 5.36
245 246 0.461693 GCTTGCAAAAAGTGTGCCCA 60.462 50.000 0.00 0.00 41.49 5.36
246 247 2.011046 GCTTGCAAAAAGTGTGCCCAA 61.011 47.619 0.00 0.00 41.49 4.12
247 248 1.935199 CTTGCAAAAAGTGTGCCCAAG 59.065 47.619 0.00 0.00 41.49 3.61
248 249 0.901124 TGCAAAAAGTGTGCCCAAGT 59.099 45.000 0.00 0.00 41.49 3.16
249 250 1.289276 GCAAAAAGTGTGCCCAAGTG 58.711 50.000 0.00 0.00 35.91 3.16
250 251 1.289276 CAAAAAGTGTGCCCAAGTGC 58.711 50.000 0.00 0.00 0.00 4.40
251 252 0.177836 AAAAAGTGTGCCCAAGTGCC 59.822 50.000 0.00 0.00 0.00 5.01
252 253 0.687427 AAAAGTGTGCCCAAGTGCCT 60.687 50.000 0.00 0.00 0.00 4.75
253 254 1.109323 AAAGTGTGCCCAAGTGCCTC 61.109 55.000 0.00 0.00 0.00 4.70
254 255 2.203337 GTGTGCCCAAGTGCCTCA 60.203 61.111 0.00 0.00 0.00 3.86
255 256 1.604593 GTGTGCCCAAGTGCCTCAT 60.605 57.895 0.00 0.00 0.00 2.90
256 257 1.303561 TGTGCCCAAGTGCCTCATC 60.304 57.895 0.00 0.00 0.00 2.92
257 258 2.046023 TGCCCAAGTGCCTCATCG 60.046 61.111 0.00 0.00 0.00 3.84
258 259 2.825836 GCCCAAGTGCCTCATCGG 60.826 66.667 0.00 0.00 0.00 4.18
259 260 2.989639 CCCAAGTGCCTCATCGGA 59.010 61.111 0.00 0.00 33.16 4.55
260 261 1.450312 CCCAAGTGCCTCATCGGAC 60.450 63.158 0.00 0.00 33.16 4.79
261 262 1.296392 CCAAGTGCCTCATCGGACA 59.704 57.895 0.00 0.00 33.16 4.02
262 263 1.021390 CCAAGTGCCTCATCGGACAC 61.021 60.000 0.00 0.00 38.96 3.67
263 264 1.021390 CAAGTGCCTCATCGGACACC 61.021 60.000 0.00 0.00 39.27 4.16
264 265 2.125106 GTGCCTCATCGGACACCC 60.125 66.667 0.00 0.00 35.25 4.61
265 266 2.606213 TGCCTCATCGGACACCCA 60.606 61.111 0.00 0.00 33.16 4.51
266 267 2.220586 TGCCTCATCGGACACCCAA 61.221 57.895 0.00 0.00 33.16 4.12
267 268 1.224592 GCCTCATCGGACACCCAAT 59.775 57.895 0.00 0.00 33.16 3.16
268 269 1.097547 GCCTCATCGGACACCCAATG 61.098 60.000 0.00 0.00 33.16 2.82
269 270 1.097547 CCTCATCGGACACCCAATGC 61.098 60.000 0.00 0.00 33.16 3.56
270 271 1.077787 TCATCGGACACCCAATGCC 60.078 57.895 0.00 0.00 0.00 4.40
271 272 1.077501 CATCGGACACCCAATGCCT 60.078 57.895 0.00 0.00 0.00 4.75
272 273 0.180171 CATCGGACACCCAATGCCTA 59.820 55.000 0.00 0.00 0.00 3.93
273 274 0.916086 ATCGGACACCCAATGCCTAA 59.084 50.000 0.00 0.00 0.00 2.69
274 275 0.251916 TCGGACACCCAATGCCTAAG 59.748 55.000 0.00 0.00 0.00 2.18
275 276 0.035439 CGGACACCCAATGCCTAAGT 60.035 55.000 0.00 0.00 0.00 2.24
276 277 1.208535 CGGACACCCAATGCCTAAGTA 59.791 52.381 0.00 0.00 0.00 2.24
277 278 2.158813 CGGACACCCAATGCCTAAGTAT 60.159 50.000 0.00 0.00 0.00 2.12
278 279 3.477530 GGACACCCAATGCCTAAGTATC 58.522 50.000 0.00 0.00 0.00 2.24
279 280 3.136626 GGACACCCAATGCCTAAGTATCT 59.863 47.826 0.00 0.00 0.00 1.98
280 281 4.347000 GGACACCCAATGCCTAAGTATCTA 59.653 45.833 0.00 0.00 0.00 1.98
281 282 5.291905 ACACCCAATGCCTAAGTATCTAC 57.708 43.478 0.00 0.00 0.00 2.59
282 283 4.202223 ACACCCAATGCCTAAGTATCTACG 60.202 45.833 0.00 0.00 0.00 3.51
283 284 3.244112 ACCCAATGCCTAAGTATCTACGC 60.244 47.826 0.00 0.00 0.00 4.42
284 285 3.244078 CCCAATGCCTAAGTATCTACGCA 60.244 47.826 0.00 0.00 0.00 5.24
285 286 4.377021 CCAATGCCTAAGTATCTACGCAA 58.623 43.478 0.00 0.00 0.00 4.85
286 287 4.211374 CCAATGCCTAAGTATCTACGCAAC 59.789 45.833 0.00 0.00 0.00 4.17
287 288 4.665833 ATGCCTAAGTATCTACGCAACA 57.334 40.909 0.00 0.00 0.00 3.33
288 289 3.777478 TGCCTAAGTATCTACGCAACAC 58.223 45.455 0.00 0.00 0.00 3.32
289 290 3.446161 TGCCTAAGTATCTACGCAACACT 59.554 43.478 0.00 0.00 0.00 3.55
290 291 4.081862 TGCCTAAGTATCTACGCAACACTT 60.082 41.667 0.00 0.00 34.10 3.16
291 292 4.868734 GCCTAAGTATCTACGCAACACTTT 59.131 41.667 0.00 0.00 32.09 2.66
292 293 5.350640 GCCTAAGTATCTACGCAACACTTTT 59.649 40.000 0.00 0.00 32.09 2.27
293 294 6.128363 GCCTAAGTATCTACGCAACACTTTTT 60.128 38.462 0.00 0.00 32.09 1.94
314 315 4.433186 TTTTCTCAAATATGCACGGGTG 57.567 40.909 0.00 0.00 0.00 4.61
315 316 2.779755 TCTCAAATATGCACGGGTGT 57.220 45.000 0.00 0.00 0.00 4.16
324 325 4.513519 CACGGGTGTGCGTATCAT 57.486 55.556 0.00 0.00 39.67 2.45
325 326 2.762360 CACGGGTGTGCGTATCATT 58.238 52.632 0.00 0.00 39.67 2.57
326 327 1.083489 CACGGGTGTGCGTATCATTT 58.917 50.000 0.00 0.00 39.67 2.32
327 328 1.466950 CACGGGTGTGCGTATCATTTT 59.533 47.619 0.00 0.00 39.67 1.82
328 329 2.673862 CACGGGTGTGCGTATCATTTTA 59.326 45.455 0.00 0.00 39.67 1.52
329 330 3.311322 CACGGGTGTGCGTATCATTTTAT 59.689 43.478 0.00 0.00 39.67 1.40
330 331 4.508492 CACGGGTGTGCGTATCATTTTATA 59.492 41.667 0.00 0.00 39.67 0.98
331 332 5.178623 CACGGGTGTGCGTATCATTTTATAT 59.821 40.000 0.00 0.00 39.67 0.86
332 333 6.366604 CACGGGTGTGCGTATCATTTTATATA 59.633 38.462 0.00 0.00 39.67 0.86
333 334 6.930164 ACGGGTGTGCGTATCATTTTATATAA 59.070 34.615 0.00 0.00 0.00 0.98
334 335 7.441760 ACGGGTGTGCGTATCATTTTATATAAA 59.558 33.333 3.71 3.71 0.00 1.40
335 336 8.283992 CGGGTGTGCGTATCATTTTATATAAAA 58.716 33.333 20.11 20.11 39.25 1.52
336 337 9.607285 GGGTGTGCGTATCATTTTATATAAAAG 57.393 33.333 21.75 15.01 38.42 2.27
356 357 7.987750 AAAAGAGAGGAAAAGACTTACCATC 57.012 36.000 12.03 9.67 0.00 3.51
357 358 6.943899 AAGAGAGGAAAAGACTTACCATCT 57.056 37.500 12.03 8.30 0.00 2.90
358 359 6.293004 AGAGAGGAAAAGACTTACCATCTG 57.707 41.667 12.03 0.00 0.00 2.90
359 360 4.837972 AGAGGAAAAGACTTACCATCTGC 58.162 43.478 12.03 0.00 0.00 4.26
360 361 4.287067 AGAGGAAAAGACTTACCATCTGCA 59.713 41.667 12.03 0.00 0.00 4.41
361 362 4.583871 AGGAAAAGACTTACCATCTGCAG 58.416 43.478 7.63 7.63 0.00 4.41
362 363 3.691609 GGAAAAGACTTACCATCTGCAGG 59.308 47.826 15.13 0.43 0.00 4.85
363 364 3.356529 AAAGACTTACCATCTGCAGGG 57.643 47.619 15.13 10.84 0.00 4.45
364 365 1.958288 AGACTTACCATCTGCAGGGT 58.042 50.000 15.13 16.47 41.21 4.34
365 366 2.269940 AGACTTACCATCTGCAGGGTT 58.730 47.619 18.30 2.63 38.60 4.11
366 367 3.450904 AGACTTACCATCTGCAGGGTTA 58.549 45.455 18.30 9.78 38.60 2.85
367 368 3.197983 AGACTTACCATCTGCAGGGTTAC 59.802 47.826 18.30 8.86 38.60 2.50
368 369 2.910319 ACTTACCATCTGCAGGGTTACA 59.090 45.455 18.30 0.07 38.60 2.41
369 370 3.329520 ACTTACCATCTGCAGGGTTACAA 59.670 43.478 18.30 7.58 38.60 2.41
370 371 2.200373 ACCATCTGCAGGGTTACAAC 57.800 50.000 15.13 0.00 32.12 3.32
371 372 1.086696 CCATCTGCAGGGTTACAACG 58.913 55.000 15.13 0.00 0.00 4.10
372 373 1.338674 CCATCTGCAGGGTTACAACGA 60.339 52.381 15.13 0.00 0.00 3.85
373 374 2.632377 CATCTGCAGGGTTACAACGAT 58.368 47.619 15.13 0.00 0.00 3.73
374 375 3.431626 CCATCTGCAGGGTTACAACGATA 60.432 47.826 15.13 0.00 0.00 2.92
375 376 4.380531 CATCTGCAGGGTTACAACGATAT 58.619 43.478 15.13 0.00 0.00 1.63
376 377 4.481368 TCTGCAGGGTTACAACGATATT 57.519 40.909 15.13 0.00 0.00 1.28
377 378 4.839121 TCTGCAGGGTTACAACGATATTT 58.161 39.130 15.13 0.00 0.00 1.40
378 379 5.979993 TCTGCAGGGTTACAACGATATTTA 58.020 37.500 15.13 0.00 0.00 1.40
379 380 5.813672 TCTGCAGGGTTACAACGATATTTAC 59.186 40.000 15.13 0.00 0.00 2.01
380 381 5.489249 TGCAGGGTTACAACGATATTTACA 58.511 37.500 0.00 0.00 0.00 2.41
381 382 5.352016 TGCAGGGTTACAACGATATTTACAC 59.648 40.000 0.00 0.00 0.00 2.90
382 383 5.352016 GCAGGGTTACAACGATATTTACACA 59.648 40.000 0.00 0.00 0.00 3.72
383 384 6.128227 GCAGGGTTACAACGATATTTACACAA 60.128 38.462 0.00 0.00 0.00 3.33
384 385 7.238571 CAGGGTTACAACGATATTTACACAAC 58.761 38.462 0.00 0.00 0.00 3.32
385 386 6.935771 AGGGTTACAACGATATTTACACAACA 59.064 34.615 0.00 0.00 0.00 3.33
386 387 7.017055 GGGTTACAACGATATTTACACAACAC 58.983 38.462 0.00 0.00 0.00 3.32
387 388 7.307870 GGGTTACAACGATATTTACACAACACA 60.308 37.037 0.00 0.00 0.00 3.72
388 389 8.231837 GGTTACAACGATATTTACACAACACAT 58.768 33.333 0.00 0.00 0.00 3.21
389 390 9.601971 GTTACAACGATATTTACACAACACATT 57.398 29.630 0.00 0.00 0.00 2.71
392 393 9.176181 ACAACGATATTTACACAACACATTTTC 57.824 29.630 0.00 0.00 0.00 2.29
393 394 9.175060 CAACGATATTTACACAACACATTTTCA 57.825 29.630 0.00 0.00 0.00 2.69
394 395 9.737427 AACGATATTTACACAACACATTTTCAA 57.263 25.926 0.00 0.00 0.00 2.69
395 396 9.737427 ACGATATTTACACAACACATTTTCAAA 57.263 25.926 0.00 0.00 0.00 2.69
396 397 9.987901 CGATATTTACACAACACATTTTCAAAC 57.012 29.630 0.00 0.00 0.00 2.93
399 400 6.639671 TTACACAACACATTTTCAAACAGC 57.360 33.333 0.00 0.00 0.00 4.40
400 401 4.564041 ACACAACACATTTTCAAACAGCA 58.436 34.783 0.00 0.00 0.00 4.41
401 402 5.177326 ACACAACACATTTTCAAACAGCAT 58.823 33.333 0.00 0.00 0.00 3.79
402 403 6.336566 ACACAACACATTTTCAAACAGCATA 58.663 32.000 0.00 0.00 0.00 3.14
403 404 6.985645 ACACAACACATTTTCAAACAGCATAT 59.014 30.769 0.00 0.00 0.00 1.78
404 405 7.042590 ACACAACACATTTTCAAACAGCATATG 60.043 33.333 0.00 0.00 0.00 1.78
405 406 6.073657 ACAACACATTTTCAAACAGCATATGC 60.074 34.615 20.36 20.36 42.49 3.14
450 451 4.090930 AGTTTTCATCACGAATACCGAACG 59.909 41.667 0.00 0.00 41.76 3.95
457 458 3.995705 TCACGAATACCGAACGGAATTTT 59.004 39.130 20.14 7.23 41.76 1.82
1053 1077 2.269241 CGCAGGAAGGAGGGGAAC 59.731 66.667 0.00 0.00 0.00 3.62
1062 1086 0.338814 AGGAGGGGAACGGTGACTAT 59.661 55.000 0.00 0.00 0.00 2.12
1071 1095 2.185867 GGTGACTATCGCCGCCAA 59.814 61.111 0.00 0.00 37.29 4.52
1158 1182 5.450137 CGTCTTCGTCCTCACAGGTAATTAT 60.450 44.000 0.00 0.00 36.53 1.28
1233 1257 9.883142 CACTAATCCAGAGAGAAATTAGAAAGT 57.117 33.333 7.71 0.00 35.96 2.66
1287 1312 5.108385 AGCTGTTAAGTTTCATGGTTTCG 57.892 39.130 0.00 0.00 0.00 3.46
1345 1370 9.462174 CTATGAAATCTCACTAGTTAGCAAGAG 57.538 37.037 0.00 0.00 33.30 2.85
1385 1410 3.702792 AGTCTGTGTGTGCCTAGTAGAT 58.297 45.455 0.00 0.00 0.00 1.98
1408 1618 9.153479 AGATCAGCTCAGTATAGGTTAGAAAAT 57.847 33.333 0.00 0.00 0.00 1.82
1459 1669 6.525121 TCAGTAAACGAGAGAAACATTGTG 57.475 37.500 0.00 0.00 0.00 3.33
1479 1689 3.983344 GTGCTTTTATGCAAGTGAAGTGG 59.017 43.478 0.00 0.00 45.12 4.00
1480 1690 2.989166 GCTTTTATGCAAGTGAAGTGGC 59.011 45.455 0.00 0.00 0.00 5.01
1488 1698 0.179045 AAGTGAAGTGGCGCAGAAGT 60.179 50.000 10.83 0.00 0.00 3.01
1519 1731 7.078228 GTGTATTGTTTGTCTTGGTGAAGATC 58.922 38.462 0.00 0.00 40.40 2.75
1577 1790 4.271049 CAGGTCATGTTAAATACTGAGGCG 59.729 45.833 0.00 0.00 0.00 5.52
1580 1793 5.447279 GGTCATGTTAAATACTGAGGCGTTG 60.447 44.000 0.00 0.00 0.00 4.10
1614 1827 0.615850 TGGTAATGTGGCATGTCCGA 59.384 50.000 0.00 0.00 37.80 4.55
1915 2136 6.560003 TGGAAAGGTTTATCTGCTATCTGA 57.440 37.500 0.00 0.00 0.00 3.27
1920 2141 7.385894 AAGGTTTATCTGCTATCTGAATCCT 57.614 36.000 0.00 0.00 0.00 3.24
1924 2145 7.984617 GGTTTATCTGCTATCTGAATCCTATCC 59.015 40.741 0.00 0.00 0.00 2.59
1939 2160 9.877222 TGAATCCTATCCTGTACTTGACTATTA 57.123 33.333 0.00 0.00 0.00 0.98
2046 2295 6.225318 TCAGCTTTGAAATTCCTGAAATTGG 58.775 36.000 0.00 0.00 37.64 3.16
2173 2505 5.308014 TCTGATGCTAGCTCTTTCAAACAA 58.692 37.500 17.23 0.00 0.00 2.83
2176 2508 6.441274 TGATGCTAGCTCTTTCAAACAAAAG 58.559 36.000 17.23 0.00 37.55 2.27
2198 2531 4.105486 GTGTTTGGCTCTCTTTTTGTGTC 58.895 43.478 0.00 0.00 0.00 3.67
2309 2651 5.105473 TGCAGTGTACATTAGTAGAACTCCC 60.105 44.000 0.00 0.00 30.02 4.30
2314 2656 3.297736 ACATTAGTAGAACTCCCGAGGG 58.702 50.000 0.65 0.65 0.00 4.30
2335 2698 9.542462 CGAGGGTCTTTGTAAAGATCAATAATA 57.458 33.333 16.85 0.00 45.76 0.98
2400 2850 8.341173 CCTTTGATTTGTATATCTGAGTGAAGC 58.659 37.037 0.00 0.00 0.00 3.86
2519 2969 3.068024 TGAAAAACTGTGGGACTTGATGC 59.932 43.478 0.00 0.00 0.00 3.91
2590 3040 6.001460 AGGTCGTGAACAATCAATTAAAGGA 58.999 36.000 0.00 0.00 37.30 3.36
2596 3046 6.806249 GTGAACAATCAATTAAAGGAATGCGA 59.194 34.615 0.00 0.00 37.30 5.10
2851 3301 1.072965 AGAAGAAACCTGGCTGGAGTG 59.927 52.381 18.12 0.00 39.71 3.51
2882 3332 4.501559 TCTTTGAGTACGAAAACAGTCACG 59.498 41.667 0.00 0.00 0.00 4.35
2905 3355 2.359169 TAGCAAGGTCTCTGCCCCG 61.359 63.158 0.00 0.00 0.00 5.73
2950 3400 7.767659 CACATATGGAAGAAGACTCATCAGAAA 59.232 37.037 7.80 0.00 0.00 2.52
2954 3404 6.537355 TGGAAGAAGACTCATCAGAAATTGT 58.463 36.000 0.00 0.00 0.00 2.71
3031 3482 1.518325 CACTTCGGTGCCATTGTACA 58.482 50.000 0.00 0.00 39.22 2.90
3034 3485 1.401552 CTTCGGTGCCATTGTACATGG 59.598 52.381 15.87 15.87 41.99 3.66
3051 3502 2.416432 GGCCGCCTCTCTTAGTCGT 61.416 63.158 0.71 0.00 0.00 4.34
3053 3504 1.654954 GCCGCCTCTCTTAGTCGTCA 61.655 60.000 0.00 0.00 0.00 4.35
3058 3509 2.223852 GCCTCTCTTAGTCGTCAATCCC 60.224 54.545 0.00 0.00 0.00 3.85
3059 3510 3.292460 CCTCTCTTAGTCGTCAATCCCT 58.708 50.000 0.00 0.00 0.00 4.20
3062 3513 4.341487 TCTCTTAGTCGTCAATCCCTCAA 58.659 43.478 0.00 0.00 0.00 3.02
3074 3525 4.042062 TCAATCCCTCAAGAAAAGCTCAGA 59.958 41.667 0.00 0.00 0.00 3.27
3101 3555 3.181423 TGCAAGTCAGTTAATTTCCCCCT 60.181 43.478 0.00 0.00 0.00 4.79
3147 3609 1.621814 ACTGTAGGCCAGCGTTTCTTA 59.378 47.619 5.01 0.00 45.68 2.10
3157 3619 4.786609 GCCAGCGTTTCTTATGCACTATTC 60.787 45.833 0.00 0.00 41.44 1.75
3162 3624 5.237344 GCGTTTCTTATGCACTATTCAGGAT 59.763 40.000 0.00 0.00 38.70 3.24
3164 3626 7.679638 GCGTTTCTTATGCACTATTCAGGATTT 60.680 37.037 0.00 0.00 38.70 2.17
3208 3671 3.626930 TCAATAGGTTGTTGTATGGGGC 58.373 45.455 0.00 0.00 36.69 5.80
3225 3688 2.167487 GGGGCTTGTTTGTTCACTGAAA 59.833 45.455 0.00 0.00 0.00 2.69
3226 3689 3.368948 GGGGCTTGTTTGTTCACTGAAAA 60.369 43.478 0.00 0.00 0.00 2.29
3227 3690 3.616821 GGGCTTGTTTGTTCACTGAAAAC 59.383 43.478 0.00 0.00 34.97 2.43
3229 3692 4.869861 GGCTTGTTTGTTCACTGAAAACAT 59.130 37.500 9.01 0.00 41.85 2.71
3234 3697 7.462109 TGTTTGTTCACTGAAAACATATTGC 57.538 32.000 5.32 0.00 38.51 3.56
3259 3722 5.583457 CCATTTGAAATGAATTGAGAAGGCC 59.417 40.000 18.82 0.00 0.00 5.19
3447 3924 0.102120 TGCCAAACAACAGAAAGGCG 59.898 50.000 0.00 0.00 44.83 5.52
3601 5520 5.250200 TGTAACCAAGCCACGAGAAATATT 58.750 37.500 0.00 0.00 0.00 1.28
3698 5623 0.896226 AAGAACCCTACAGAGCGGAC 59.104 55.000 0.00 0.00 0.00 4.79
3713 5638 1.903877 CGGACAGCAGGAACCCAGAT 61.904 60.000 0.00 0.00 0.00 2.90
3726 5651 1.949525 ACCCAGATATGAACATTGCGC 59.050 47.619 0.00 0.00 0.00 6.09
3733 5658 0.608856 ATGAACATTGCGCCACTCCA 60.609 50.000 4.18 0.00 0.00 3.86
3828 5754 2.159599 CGAAGCCAAGATTCAAGCAGAC 60.160 50.000 0.00 0.00 0.00 3.51
3910 5837 2.844348 ACCCATTTCCATCTTACCGTCT 59.156 45.455 0.00 0.00 0.00 4.18
3919 5846 3.352338 CTTACCGTCTCCGCCGCTT 62.352 63.158 0.00 0.00 0.00 4.68
3988 5915 6.153510 AGACTAGAACAATGATCAGTAGCACA 59.846 38.462 0.09 0.00 0.00 4.57
4042 5972 3.629398 CCCTGTCAGAAACCATAGATTGC 59.371 47.826 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.003355 CGGAGCTTTCTGCCTTCCA 60.003 57.895 0.00 0.00 44.23 3.53
1 2 3.896479 CGGAGCTTTCTGCCTTCC 58.104 61.111 0.00 0.00 44.23 3.46
19 20 1.087202 TAATACCCTGCGCGTTGCTG 61.087 55.000 8.43 3.00 46.63 4.41
20 21 0.179056 ATAATACCCTGCGCGTTGCT 60.179 50.000 8.43 0.00 46.63 3.91
21 22 0.234884 GATAATACCCTGCGCGTTGC 59.765 55.000 8.43 0.00 46.70 4.17
22 23 1.865865 AGATAATACCCTGCGCGTTG 58.134 50.000 8.43 0.00 0.00 4.10
23 24 2.626743 ACTAGATAATACCCTGCGCGTT 59.373 45.455 8.43 0.00 0.00 4.84
24 25 2.236766 ACTAGATAATACCCTGCGCGT 58.763 47.619 8.43 0.00 0.00 6.01
25 26 4.634184 ATACTAGATAATACCCTGCGCG 57.366 45.455 0.00 0.00 0.00 6.86
26 27 6.649557 ACAAAATACTAGATAATACCCTGCGC 59.350 38.462 0.00 0.00 0.00 6.09
27 28 9.871238 ATACAAAATACTAGATAATACCCTGCG 57.129 33.333 0.00 0.00 0.00 5.18
43 44 9.878599 GCCACTGTATCACAATATACAAAATAC 57.121 33.333 0.00 0.00 40.79 1.89
44 45 9.620259 TGCCACTGTATCACAATATACAAAATA 57.380 29.630 0.00 0.00 40.79 1.40
45 46 8.518430 TGCCACTGTATCACAATATACAAAAT 57.482 30.769 0.00 0.00 40.79 1.82
46 47 7.929941 TGCCACTGTATCACAATATACAAAA 57.070 32.000 0.00 0.00 40.79 2.44
47 48 8.518430 AATGCCACTGTATCACAATATACAAA 57.482 30.769 0.00 0.00 40.79 2.83
48 49 9.791801 ATAATGCCACTGTATCACAATATACAA 57.208 29.630 0.00 0.00 40.79 2.41
49 50 9.791801 AATAATGCCACTGTATCACAATATACA 57.208 29.630 0.00 0.00 39.45 2.29
52 53 8.579006 CCAAATAATGCCACTGTATCACAATAT 58.421 33.333 0.00 0.00 0.00 1.28
53 54 7.559533 ACCAAATAATGCCACTGTATCACAATA 59.440 33.333 0.00 0.00 0.00 1.90
54 55 6.380846 ACCAAATAATGCCACTGTATCACAAT 59.619 34.615 0.00 0.00 0.00 2.71
55 56 5.714333 ACCAAATAATGCCACTGTATCACAA 59.286 36.000 0.00 0.00 0.00 3.33
56 57 5.260424 ACCAAATAATGCCACTGTATCACA 58.740 37.500 0.00 0.00 0.00 3.58
57 58 5.356751 TGACCAAATAATGCCACTGTATCAC 59.643 40.000 0.00 0.00 0.00 3.06
58 59 5.504853 TGACCAAATAATGCCACTGTATCA 58.495 37.500 0.00 0.00 0.00 2.15
59 60 6.449635 TTGACCAAATAATGCCACTGTATC 57.550 37.500 0.00 0.00 0.00 2.24
60 61 6.849085 TTTGACCAAATAATGCCACTGTAT 57.151 33.333 0.00 0.00 0.00 2.29
61 62 6.849085 ATTTGACCAAATAATGCCACTGTA 57.151 33.333 6.21 0.00 39.08 2.74
62 63 5.743636 ATTTGACCAAATAATGCCACTGT 57.256 34.783 6.21 0.00 39.08 3.55
63 64 7.322664 ACTAATTTGACCAAATAATGCCACTG 58.677 34.615 8.23 0.00 39.88 3.66
64 65 7.480760 ACTAATTTGACCAAATAATGCCACT 57.519 32.000 8.23 0.00 39.88 4.00
65 66 9.463443 GATACTAATTTGACCAAATAATGCCAC 57.537 33.333 8.23 0.00 39.88 5.01
66 67 8.349245 CGATACTAATTTGACCAAATAATGCCA 58.651 33.333 8.23 0.00 39.88 4.92
67 68 7.326063 GCGATACTAATTTGACCAAATAATGCC 59.674 37.037 8.23 0.00 39.88 4.40
68 69 8.076178 AGCGATACTAATTTGACCAAATAATGC 58.924 33.333 8.23 6.55 39.88 3.56
69 70 9.599322 GAGCGATACTAATTTGACCAAATAATG 57.401 33.333 8.23 5.09 39.88 1.90
70 71 8.495949 CGAGCGATACTAATTTGACCAAATAAT 58.504 33.333 8.23 0.00 39.88 1.28
71 72 7.042321 CCGAGCGATACTAATTTGACCAAATAA 60.042 37.037 8.23 0.00 39.88 1.40
72 73 6.422701 CCGAGCGATACTAATTTGACCAAATA 59.577 38.462 8.23 0.00 39.88 1.40
73 74 5.236478 CCGAGCGATACTAATTTGACCAAAT 59.764 40.000 2.38 2.38 42.35 2.32
74 75 4.569162 CCGAGCGATACTAATTTGACCAAA 59.431 41.667 0.00 0.00 34.46 3.28
75 76 4.116961 CCGAGCGATACTAATTTGACCAA 58.883 43.478 0.00 0.00 0.00 3.67
76 77 3.131577 ACCGAGCGATACTAATTTGACCA 59.868 43.478 0.00 0.00 0.00 4.02
77 78 3.489785 CACCGAGCGATACTAATTTGACC 59.510 47.826 0.00 0.00 0.00 4.02
78 79 4.110482 ACACCGAGCGATACTAATTTGAC 58.890 43.478 0.00 0.00 0.00 3.18
79 80 4.380841 ACACCGAGCGATACTAATTTGA 57.619 40.909 0.00 0.00 0.00 2.69
80 81 4.782195 GCAACACCGAGCGATACTAATTTG 60.782 45.833 0.00 0.00 0.00 2.32
81 82 3.308866 GCAACACCGAGCGATACTAATTT 59.691 43.478 0.00 0.00 0.00 1.82
82 83 2.864343 GCAACACCGAGCGATACTAATT 59.136 45.455 0.00 0.00 0.00 1.40
83 84 2.159156 TGCAACACCGAGCGATACTAAT 60.159 45.455 0.00 0.00 0.00 1.73
84 85 1.202817 TGCAACACCGAGCGATACTAA 59.797 47.619 0.00 0.00 0.00 2.24
85 86 0.812549 TGCAACACCGAGCGATACTA 59.187 50.000 0.00 0.00 0.00 1.82
86 87 0.175760 ATGCAACACCGAGCGATACT 59.824 50.000 0.00 0.00 0.00 2.12
87 88 1.004927 GAATGCAACACCGAGCGATAC 60.005 52.381 0.00 0.00 0.00 2.24
88 89 1.134818 AGAATGCAACACCGAGCGATA 60.135 47.619 0.00 0.00 0.00 2.92
89 90 0.391661 AGAATGCAACACCGAGCGAT 60.392 50.000 0.00 0.00 0.00 4.58
90 91 0.602638 AAGAATGCAACACCGAGCGA 60.603 50.000 0.00 0.00 0.00 4.93
91 92 0.453282 CAAGAATGCAACACCGAGCG 60.453 55.000 0.00 0.00 0.00 5.03
92 93 0.593128 ACAAGAATGCAACACCGAGC 59.407 50.000 0.00 0.00 0.00 5.03
93 94 3.354089 AAACAAGAATGCAACACCGAG 57.646 42.857 0.00 0.00 0.00 4.63
94 95 3.443037 CAAAACAAGAATGCAACACCGA 58.557 40.909 0.00 0.00 0.00 4.69
95 96 2.033832 GCAAAACAAGAATGCAACACCG 60.034 45.455 0.00 0.00 39.81 4.94
96 97 2.935201 TGCAAAACAAGAATGCAACACC 59.065 40.909 0.00 0.00 46.23 4.16
102 103 4.799419 ACAACATGCAAAACAAGAATGC 57.201 36.364 0.00 0.00 40.45 3.56
103 104 4.965158 GCAACAACATGCAAAACAAGAATG 59.035 37.500 0.00 0.00 45.70 2.67
104 105 5.159399 GCAACAACATGCAAAACAAGAAT 57.841 34.783 0.00 0.00 45.70 2.40
105 106 4.596801 GCAACAACATGCAAAACAAGAA 57.403 36.364 0.00 0.00 45.70 2.52
115 116 0.599204 AGCTTGCTGCAACAACATGC 60.599 50.000 11.69 12.13 45.94 4.06
116 117 1.136690 CAGCTTGCTGCAACAACATG 58.863 50.000 11.69 1.68 45.94 3.21
117 118 3.580904 CAGCTTGCTGCAACAACAT 57.419 47.368 11.69 0.00 45.94 2.71
125 126 0.317770 TAACAAACGCAGCTTGCTGC 60.318 50.000 30.77 30.77 42.25 5.25
126 127 2.336554 ATAACAAACGCAGCTTGCTG 57.663 45.000 17.34 17.34 42.25 4.41
127 128 2.034558 ACAATAACAAACGCAGCTTGCT 59.965 40.909 6.58 0.00 42.25 3.91
128 129 2.153627 CACAATAACAAACGCAGCTTGC 59.846 45.455 0.00 0.00 37.04 4.01
129 130 3.371168 ACACAATAACAAACGCAGCTTG 58.629 40.909 0.00 0.00 39.81 4.01
130 131 3.708563 ACACAATAACAAACGCAGCTT 57.291 38.095 0.00 0.00 0.00 3.74
131 132 3.708563 AACACAATAACAAACGCAGCT 57.291 38.095 0.00 0.00 0.00 4.24
132 133 3.181575 GGAAACACAATAACAAACGCAGC 59.818 43.478 0.00 0.00 0.00 5.25
133 134 3.733727 GGGAAACACAATAACAAACGCAG 59.266 43.478 0.00 0.00 0.00 5.18
134 135 3.381908 AGGGAAACACAATAACAAACGCA 59.618 39.130 0.00 0.00 0.00 5.24
135 136 3.972403 AGGGAAACACAATAACAAACGC 58.028 40.909 0.00 0.00 0.00 4.84
136 137 5.176407 TGAGGGAAACACAATAACAAACG 57.824 39.130 0.00 0.00 0.00 3.60
137 138 7.926018 AGAAATGAGGGAAACACAATAACAAAC 59.074 33.333 0.00 0.00 0.00 2.93
138 139 8.017418 AGAAATGAGGGAAACACAATAACAAA 57.983 30.769 0.00 0.00 0.00 2.83
139 140 7.521423 CGAGAAATGAGGGAAACACAATAACAA 60.521 37.037 0.00 0.00 0.00 2.83
140 141 6.072728 CGAGAAATGAGGGAAACACAATAACA 60.073 38.462 0.00 0.00 0.00 2.41
141 142 6.314784 CGAGAAATGAGGGAAACACAATAAC 58.685 40.000 0.00 0.00 0.00 1.89
142 143 5.106317 GCGAGAAATGAGGGAAACACAATAA 60.106 40.000 0.00 0.00 0.00 1.40
143 144 4.394920 GCGAGAAATGAGGGAAACACAATA 59.605 41.667 0.00 0.00 0.00 1.90
144 145 3.191371 GCGAGAAATGAGGGAAACACAAT 59.809 43.478 0.00 0.00 0.00 2.71
145 146 2.552315 GCGAGAAATGAGGGAAACACAA 59.448 45.455 0.00 0.00 0.00 3.33
146 147 2.151202 GCGAGAAATGAGGGAAACACA 58.849 47.619 0.00 0.00 0.00 3.72
147 148 2.151202 TGCGAGAAATGAGGGAAACAC 58.849 47.619 0.00 0.00 0.00 3.32
148 149 2.559698 TGCGAGAAATGAGGGAAACA 57.440 45.000 0.00 0.00 0.00 2.83
149 150 3.485877 CGAATGCGAGAAATGAGGGAAAC 60.486 47.826 0.00 0.00 40.82 2.78
150 151 2.677836 CGAATGCGAGAAATGAGGGAAA 59.322 45.455 0.00 0.00 40.82 3.13
151 152 2.093711 TCGAATGCGAGAAATGAGGGAA 60.094 45.455 0.00 0.00 42.51 3.97
152 153 1.480545 TCGAATGCGAGAAATGAGGGA 59.519 47.619 0.00 0.00 42.51 4.20
153 154 1.939974 TCGAATGCGAGAAATGAGGG 58.060 50.000 0.00 0.00 42.51 4.30
164 165 3.469899 TTGAGTTTTCCATCGAATGCG 57.530 42.857 0.00 0.00 39.35 4.73
165 166 4.142403 TGGATTGAGTTTTCCATCGAATGC 60.142 41.667 0.00 0.00 37.10 3.56
166 167 5.565592 TGGATTGAGTTTTCCATCGAATG 57.434 39.130 0.00 0.00 37.10 2.67
167 168 5.476599 TGTTGGATTGAGTTTTCCATCGAAT 59.523 36.000 0.00 0.00 41.52 3.34
168 169 4.824537 TGTTGGATTGAGTTTTCCATCGAA 59.175 37.500 0.00 0.00 41.52 3.71
169 170 4.393834 TGTTGGATTGAGTTTTCCATCGA 58.606 39.130 0.00 0.00 41.52 3.59
170 171 4.764679 TGTTGGATTGAGTTTTCCATCG 57.235 40.909 0.00 0.00 41.52 3.84
171 172 5.473039 CCTTGTTGGATTGAGTTTTCCATC 58.527 41.667 0.00 0.00 41.52 3.51
172 173 4.284234 CCCTTGTTGGATTGAGTTTTCCAT 59.716 41.667 0.00 0.00 41.52 3.41
173 174 3.640967 CCCTTGTTGGATTGAGTTTTCCA 59.359 43.478 0.00 0.00 40.24 3.53
174 175 3.895041 TCCCTTGTTGGATTGAGTTTTCC 59.105 43.478 0.00 0.00 38.35 3.13
175 176 5.243730 TGATCCCTTGTTGGATTGAGTTTTC 59.756 40.000 0.00 0.00 45.25 2.29
176 177 5.147032 TGATCCCTTGTTGGATTGAGTTTT 58.853 37.500 0.00 0.00 45.25 2.43
177 178 4.739793 TGATCCCTTGTTGGATTGAGTTT 58.260 39.130 0.00 0.00 45.25 2.66
178 179 4.387026 TGATCCCTTGTTGGATTGAGTT 57.613 40.909 0.00 0.00 45.25 3.01
179 180 4.387026 TTGATCCCTTGTTGGATTGAGT 57.613 40.909 0.00 0.00 45.25 3.41
180 181 5.473039 GTTTTGATCCCTTGTTGGATTGAG 58.527 41.667 0.00 0.00 45.25 3.02
181 182 4.283212 GGTTTTGATCCCTTGTTGGATTGA 59.717 41.667 0.00 0.00 45.25 2.57
182 183 4.563374 GGGTTTTGATCCCTTGTTGGATTG 60.563 45.833 0.00 0.00 45.25 2.67
183 184 3.582647 GGGTTTTGATCCCTTGTTGGATT 59.417 43.478 0.00 0.00 45.25 3.01
185 186 2.604139 GGGTTTTGATCCCTTGTTGGA 58.396 47.619 0.00 0.00 41.58 3.53
193 194 2.242452 AGCCTAGAAGGGTTTTGATCCC 59.758 50.000 0.00 0.00 45.25 3.85
194 195 3.653835 AGCCTAGAAGGGTTTTGATCC 57.346 47.619 0.00 0.00 45.25 3.36
203 204 3.372440 AACAAATGGAGCCTAGAAGGG 57.628 47.619 0.00 0.00 35.37 3.95
204 205 4.619160 GCAAAACAAATGGAGCCTAGAAGG 60.619 45.833 0.00 0.00 38.80 3.46
205 206 4.219288 AGCAAAACAAATGGAGCCTAGAAG 59.781 41.667 0.00 0.00 0.00 2.85
206 207 4.151883 AGCAAAACAAATGGAGCCTAGAA 58.848 39.130 0.00 0.00 0.00 2.10
207 208 3.766545 AGCAAAACAAATGGAGCCTAGA 58.233 40.909 0.00 0.00 0.00 2.43
208 209 4.240096 CAAGCAAAACAAATGGAGCCTAG 58.760 43.478 0.00 0.00 0.00 3.02
209 210 3.554752 GCAAGCAAAACAAATGGAGCCTA 60.555 43.478 0.00 0.00 0.00 3.93
210 211 2.807837 GCAAGCAAAACAAATGGAGCCT 60.808 45.455 0.00 0.00 0.00 4.58
211 212 1.532437 GCAAGCAAAACAAATGGAGCC 59.468 47.619 0.00 0.00 0.00 4.70
212 213 2.211806 TGCAAGCAAAACAAATGGAGC 58.788 42.857 0.00 0.00 0.00 4.70
213 214 4.879104 TTTGCAAGCAAAACAAATGGAG 57.121 36.364 17.03 0.00 42.16 3.86
223 224 1.736681 GGCACACTTTTTGCAAGCAAA 59.263 42.857 15.59 15.59 42.12 3.68
224 225 1.367659 GGCACACTTTTTGCAAGCAA 58.632 45.000 2.89 2.89 42.12 3.91
225 226 0.461693 GGGCACACTTTTTGCAAGCA 60.462 50.000 0.00 0.00 42.12 3.91
226 227 0.461693 TGGGCACACTTTTTGCAAGC 60.462 50.000 0.00 0.00 42.12 4.01
227 228 1.935199 CTTGGGCACACTTTTTGCAAG 59.065 47.619 0.00 0.00 42.12 4.01
228 229 1.277557 ACTTGGGCACACTTTTTGCAA 59.722 42.857 0.00 0.00 42.12 4.08
229 230 0.901124 ACTTGGGCACACTTTTTGCA 59.099 45.000 0.00 0.00 42.12 4.08
230 231 1.289276 CACTTGGGCACACTTTTTGC 58.711 50.000 0.00 0.00 39.41 3.68
231 232 1.289276 GCACTTGGGCACACTTTTTG 58.711 50.000 0.00 0.00 0.00 2.44
232 233 0.177836 GGCACTTGGGCACACTTTTT 59.822 50.000 0.00 0.00 42.77 1.94
233 234 0.687427 AGGCACTTGGGCACACTTTT 60.687 50.000 0.00 0.00 46.44 2.27
234 235 1.076044 AGGCACTTGGGCACACTTT 60.076 52.632 0.00 0.00 46.44 2.66
235 236 1.529244 GAGGCACTTGGGCACACTT 60.529 57.895 0.00 0.00 46.44 3.16
236 237 2.072874 ATGAGGCACTTGGGCACACT 62.073 55.000 0.00 0.00 44.79 3.55
237 238 1.589716 GATGAGGCACTTGGGCACAC 61.590 60.000 0.00 0.00 44.79 3.82
238 239 1.303561 GATGAGGCACTTGGGCACA 60.304 57.895 0.00 0.00 45.94 4.57
239 240 2.401766 CGATGAGGCACTTGGGCAC 61.402 63.158 0.00 0.00 46.44 5.01
240 241 2.046023 CGATGAGGCACTTGGGCA 60.046 61.111 0.00 0.00 46.44 5.36
241 242 2.825836 CCGATGAGGCACTTGGGC 60.826 66.667 0.00 0.00 41.55 5.36
242 243 1.450312 GTCCGATGAGGCACTTGGG 60.450 63.158 0.00 0.00 41.55 4.12
243 244 1.021390 GTGTCCGATGAGGCACTTGG 61.021 60.000 0.00 0.00 41.55 3.61
244 245 1.021390 GGTGTCCGATGAGGCACTTG 61.021 60.000 10.02 0.00 41.55 3.16
245 246 1.296715 GGTGTCCGATGAGGCACTT 59.703 57.895 10.02 0.00 41.55 3.16
247 248 2.125106 GGGTGTCCGATGAGGCAC 60.125 66.667 0.00 0.00 42.43 5.01
248 249 1.561769 ATTGGGTGTCCGATGAGGCA 61.562 55.000 0.00 0.00 40.77 4.75
249 250 1.224592 ATTGGGTGTCCGATGAGGC 59.775 57.895 0.00 0.00 40.77 4.70
254 255 0.916086 TTAGGCATTGGGTGTCCGAT 59.084 50.000 0.00 0.00 37.65 4.18
255 256 0.251916 CTTAGGCATTGGGTGTCCGA 59.748 55.000 0.00 0.00 35.24 4.55
256 257 0.035439 ACTTAGGCATTGGGTGTCCG 60.035 55.000 0.00 0.00 35.24 4.79
257 258 3.136626 AGATACTTAGGCATTGGGTGTCC 59.863 47.826 0.00 0.00 30.86 4.02
258 259 4.423625 AGATACTTAGGCATTGGGTGTC 57.576 45.455 0.00 0.00 0.00 3.67
259 260 4.202223 CGTAGATACTTAGGCATTGGGTGT 60.202 45.833 0.00 0.00 0.00 4.16
260 261 4.307432 CGTAGATACTTAGGCATTGGGTG 58.693 47.826 0.00 0.00 0.00 4.61
261 262 3.244112 GCGTAGATACTTAGGCATTGGGT 60.244 47.826 0.00 0.00 35.20 4.51
262 263 3.244078 TGCGTAGATACTTAGGCATTGGG 60.244 47.826 0.00 0.00 38.92 4.12
263 264 3.990092 TGCGTAGATACTTAGGCATTGG 58.010 45.455 0.00 0.00 38.92 3.16
264 265 4.808895 TGTTGCGTAGATACTTAGGCATTG 59.191 41.667 1.87 0.00 42.09 2.82
265 266 4.809426 GTGTTGCGTAGATACTTAGGCATT 59.191 41.667 1.87 0.00 42.09 3.56
266 267 4.099573 AGTGTTGCGTAGATACTTAGGCAT 59.900 41.667 1.87 0.00 42.09 4.40
267 268 3.446161 AGTGTTGCGTAGATACTTAGGCA 59.554 43.478 0.00 0.00 41.20 4.75
268 269 4.043037 AGTGTTGCGTAGATACTTAGGC 57.957 45.455 0.00 0.00 35.56 3.93
269 270 6.963049 AAAAGTGTTGCGTAGATACTTAGG 57.037 37.500 0.00 0.00 31.85 2.69
292 293 4.279671 ACACCCGTGCATATTTGAGAAAAA 59.720 37.500 0.00 0.00 0.00 1.94
293 294 3.823873 ACACCCGTGCATATTTGAGAAAA 59.176 39.130 0.00 0.00 0.00 2.29
294 295 3.190327 CACACCCGTGCATATTTGAGAAA 59.810 43.478 0.00 0.00 36.06 2.52
295 296 2.746904 CACACCCGTGCATATTTGAGAA 59.253 45.455 0.00 0.00 36.06 2.87
296 297 2.355197 CACACCCGTGCATATTTGAGA 58.645 47.619 0.00 0.00 36.06 3.27
297 298 2.830772 CACACCCGTGCATATTTGAG 57.169 50.000 0.00 0.00 36.06 3.02
307 308 1.083489 AAATGATACGCACACCCGTG 58.917 50.000 0.00 0.00 46.56 4.94
308 309 1.816074 AAAATGATACGCACACCCGT 58.184 45.000 0.00 0.00 44.62 5.28
309 310 5.856126 ATATAAAATGATACGCACACCCG 57.144 39.130 0.00 0.00 0.00 5.28
310 311 9.607285 CTTTTATATAAAATGATACGCACACCC 57.393 33.333 18.58 0.00 34.95 4.61
330 331 9.674068 GATGGTAAGTCTTTTCCTCTCTTTTAT 57.326 33.333 0.00 0.00 0.00 1.40
331 332 8.881262 AGATGGTAAGTCTTTTCCTCTCTTTTA 58.119 33.333 0.00 0.00 0.00 1.52
332 333 7.663493 CAGATGGTAAGTCTTTTCCTCTCTTTT 59.337 37.037 0.00 0.00 0.00 2.27
333 334 7.164803 CAGATGGTAAGTCTTTTCCTCTCTTT 58.835 38.462 0.00 0.00 0.00 2.52
334 335 6.706295 CAGATGGTAAGTCTTTTCCTCTCTT 58.294 40.000 0.00 0.00 0.00 2.85
335 336 5.337975 GCAGATGGTAAGTCTTTTCCTCTCT 60.338 44.000 0.00 0.00 0.00 3.10
336 337 4.873259 GCAGATGGTAAGTCTTTTCCTCTC 59.127 45.833 0.00 0.00 0.00 3.20
337 338 4.287067 TGCAGATGGTAAGTCTTTTCCTCT 59.713 41.667 0.00 0.00 0.00 3.69
338 339 4.579869 TGCAGATGGTAAGTCTTTTCCTC 58.420 43.478 0.00 0.00 0.00 3.71
339 340 4.566488 CCTGCAGATGGTAAGTCTTTTCCT 60.566 45.833 17.39 0.00 0.00 3.36
340 341 3.691609 CCTGCAGATGGTAAGTCTTTTCC 59.308 47.826 17.39 0.00 0.00 3.13
341 342 3.691609 CCCTGCAGATGGTAAGTCTTTTC 59.308 47.826 17.39 0.00 0.00 2.29
342 343 3.074538 ACCCTGCAGATGGTAAGTCTTTT 59.925 43.478 17.39 0.00 31.61 2.27
343 344 2.644798 ACCCTGCAGATGGTAAGTCTTT 59.355 45.455 17.39 0.00 31.61 2.52
344 345 2.269940 ACCCTGCAGATGGTAAGTCTT 58.730 47.619 17.39 0.00 31.61 3.01
345 346 1.958288 ACCCTGCAGATGGTAAGTCT 58.042 50.000 17.39 0.00 31.61 3.24
346 347 2.789409 AACCCTGCAGATGGTAAGTC 57.211 50.000 17.39 0.00 33.52 3.01
347 348 2.910319 TGTAACCCTGCAGATGGTAAGT 59.090 45.455 17.39 2.69 33.52 2.24
348 349 3.627395 TGTAACCCTGCAGATGGTAAG 57.373 47.619 17.39 0.00 33.52 2.34
349 350 3.681593 GTTGTAACCCTGCAGATGGTAA 58.318 45.455 17.39 3.56 33.52 2.85
350 351 2.354303 CGTTGTAACCCTGCAGATGGTA 60.354 50.000 17.39 6.05 33.52 3.25
351 352 1.610624 CGTTGTAACCCTGCAGATGGT 60.611 52.381 17.39 12.45 36.06 3.55
352 353 1.086696 CGTTGTAACCCTGCAGATGG 58.913 55.000 17.39 11.70 0.00 3.51
353 354 2.093306 TCGTTGTAACCCTGCAGATG 57.907 50.000 17.39 8.57 0.00 2.90
354 355 4.689612 ATATCGTTGTAACCCTGCAGAT 57.310 40.909 17.39 3.39 0.00 2.90
355 356 4.481368 AATATCGTTGTAACCCTGCAGA 57.519 40.909 17.39 0.00 0.00 4.26
356 357 5.583061 TGTAAATATCGTTGTAACCCTGCAG 59.417 40.000 6.78 6.78 0.00 4.41
357 358 5.352016 GTGTAAATATCGTTGTAACCCTGCA 59.648 40.000 0.00 0.00 0.00 4.41
358 359 5.352016 TGTGTAAATATCGTTGTAACCCTGC 59.648 40.000 0.00 0.00 0.00 4.85
359 360 6.971527 TGTGTAAATATCGTTGTAACCCTG 57.028 37.500 0.00 0.00 0.00 4.45
360 361 6.935771 TGTTGTGTAAATATCGTTGTAACCCT 59.064 34.615 0.00 0.00 0.00 4.34
361 362 7.017055 GTGTTGTGTAAATATCGTTGTAACCC 58.983 38.462 0.00 0.00 0.00 4.11
362 363 7.574496 TGTGTTGTGTAAATATCGTTGTAACC 58.426 34.615 0.00 0.00 0.00 2.85
363 364 9.601971 AATGTGTTGTGTAAATATCGTTGTAAC 57.398 29.630 0.00 0.00 0.00 2.50
366 367 9.176181 GAAAATGTGTTGTGTAAATATCGTTGT 57.824 29.630 0.00 0.00 0.00 3.32
367 368 9.175060 TGAAAATGTGTTGTGTAAATATCGTTG 57.825 29.630 0.00 0.00 0.00 4.10
368 369 9.737427 TTGAAAATGTGTTGTGTAAATATCGTT 57.263 25.926 0.00 0.00 0.00 3.85
369 370 9.737427 TTTGAAAATGTGTTGTGTAAATATCGT 57.263 25.926 0.00 0.00 0.00 3.73
370 371 9.987901 GTTTGAAAATGTGTTGTGTAAATATCG 57.012 29.630 0.00 0.00 0.00 2.92
373 374 8.812329 GCTGTTTGAAAATGTGTTGTGTAAATA 58.188 29.630 0.00 0.00 0.00 1.40
374 375 7.332926 TGCTGTTTGAAAATGTGTTGTGTAAAT 59.667 29.630 0.00 0.00 0.00 1.40
375 376 6.646653 TGCTGTTTGAAAATGTGTTGTGTAAA 59.353 30.769 0.00 0.00 0.00 2.01
376 377 6.159293 TGCTGTTTGAAAATGTGTTGTGTAA 58.841 32.000 0.00 0.00 0.00 2.41
377 378 5.714047 TGCTGTTTGAAAATGTGTTGTGTA 58.286 33.333 0.00 0.00 0.00 2.90
378 379 4.564041 TGCTGTTTGAAAATGTGTTGTGT 58.436 34.783 0.00 0.00 0.00 3.72
379 380 5.721876 ATGCTGTTTGAAAATGTGTTGTG 57.278 34.783 0.00 0.00 0.00 3.33
380 381 6.073657 GCATATGCTGTTTGAAAATGTGTTGT 60.074 34.615 20.64 0.00 38.21 3.32
381 382 6.073711 TGCATATGCTGTTTGAAAATGTGTTG 60.074 34.615 27.13 0.00 42.66 3.33
382 383 5.990386 TGCATATGCTGTTTGAAAATGTGTT 59.010 32.000 27.13 0.00 42.66 3.32
383 384 5.539979 TGCATATGCTGTTTGAAAATGTGT 58.460 33.333 27.13 0.00 42.66 3.72
384 385 6.366604 TCTTGCATATGCTGTTTGAAAATGTG 59.633 34.615 27.13 1.92 42.66 3.21
385 386 6.457355 TCTTGCATATGCTGTTTGAAAATGT 58.543 32.000 27.13 0.00 42.66 2.71
386 387 6.954616 TCTTGCATATGCTGTTTGAAAATG 57.045 33.333 27.13 7.23 42.66 2.32
387 388 7.156673 ACTTCTTGCATATGCTGTTTGAAAAT 58.843 30.769 27.13 11.90 42.66 1.82
388 389 6.514947 ACTTCTTGCATATGCTGTTTGAAAA 58.485 32.000 27.13 10.45 42.66 2.29
389 390 6.088016 ACTTCTTGCATATGCTGTTTGAAA 57.912 33.333 27.13 11.14 42.66 2.69
390 391 5.710513 ACTTCTTGCATATGCTGTTTGAA 57.289 34.783 27.13 19.71 42.66 2.69
391 392 8.681486 ATATACTTCTTGCATATGCTGTTTGA 57.319 30.769 27.13 14.72 42.66 2.69
392 393 9.740239 AAATATACTTCTTGCATATGCTGTTTG 57.260 29.630 27.13 16.50 42.66 2.93
393 394 9.740239 CAAATATACTTCTTGCATATGCTGTTT 57.260 29.630 27.13 12.46 42.66 2.83
394 395 8.906867 ACAAATATACTTCTTGCATATGCTGTT 58.093 29.630 27.13 7.29 42.66 3.16
395 396 8.455903 ACAAATATACTTCTTGCATATGCTGT 57.544 30.769 27.13 15.31 42.66 4.40
396 397 9.740239 AAACAAATATACTTCTTGCATATGCTG 57.260 29.630 27.13 19.29 42.66 4.41
397 398 9.740239 CAAACAAATATACTTCTTGCATATGCT 57.260 29.630 27.13 9.51 42.66 3.79
398 399 9.520204 ACAAACAAATATACTTCTTGCATATGC 57.480 29.630 21.09 21.09 42.50 3.14
401 402 9.237187 TCCACAAACAAATATACTTCTTGCATA 57.763 29.630 0.00 0.00 0.00 3.14
402 403 8.121305 TCCACAAACAAATATACTTCTTGCAT 57.879 30.769 0.00 0.00 0.00 3.96
403 404 7.230510 ACTCCACAAACAAATATACTTCTTGCA 59.769 33.333 0.00 0.00 0.00 4.08
404 405 7.593825 ACTCCACAAACAAATATACTTCTTGC 58.406 34.615 0.00 0.00 0.00 4.01
405 406 9.965824 AAACTCCACAAACAAATATACTTCTTG 57.034 29.630 0.00 0.00 0.00 3.02
457 458 9.113838 GCCTGAATTTTCTAGTATCTGAATTCA 57.886 33.333 8.12 8.12 39.68 2.57
503 509 2.766229 GGGAGAGAGAGGGGTGCC 60.766 72.222 0.00 0.00 0.00 5.01
504 510 2.039624 TGGGAGAGAGAGGGGTGC 59.960 66.667 0.00 0.00 0.00 5.01
506 512 1.531981 ATGGTGGGAGAGAGAGGGGT 61.532 60.000 0.00 0.00 0.00 4.95
508 514 1.694133 GCATGGTGGGAGAGAGAGGG 61.694 65.000 0.00 0.00 0.00 4.30
510 516 1.828768 GGCATGGTGGGAGAGAGAG 59.171 63.158 0.00 0.00 0.00 3.20
511 517 2.060383 CGGCATGGTGGGAGAGAGA 61.060 63.158 0.00 0.00 0.00 3.10
513 519 3.785859 GCGGCATGGTGGGAGAGA 61.786 66.667 0.00 0.00 0.00 3.10
514 520 4.864334 GGCGGCATGGTGGGAGAG 62.864 72.222 3.07 0.00 0.00 3.20
602 613 1.448922 GAGAGGATGAGGACGACCGG 61.449 65.000 0.00 0.00 41.83 5.28
603 614 1.448922 GGAGAGGATGAGGACGACCG 61.449 65.000 0.00 0.00 41.83 4.79
604 615 1.110518 GGGAGAGGATGAGGACGACC 61.111 65.000 0.00 0.00 0.00 4.79
605 616 0.106419 AGGGAGAGGATGAGGACGAC 60.106 60.000 0.00 0.00 0.00 4.34
606 617 0.183971 GAGGGAGAGGATGAGGACGA 59.816 60.000 0.00 0.00 0.00 4.20
607 618 0.184933 AGAGGGAGAGGATGAGGACG 59.815 60.000 0.00 0.00 0.00 4.79
608 619 1.480498 GGAGAGGGAGAGGATGAGGAC 60.480 61.905 0.00 0.00 0.00 3.85
609 620 0.856982 GGAGAGGGAGAGGATGAGGA 59.143 60.000 0.00 0.00 0.00 3.71
610 621 0.859760 AGGAGAGGGAGAGGATGAGG 59.140 60.000 0.00 0.00 0.00 3.86
614 625 1.503347 GAGGAAGGAGAGGGAGAGGAT 59.497 57.143 0.00 0.00 0.00 3.24
1233 1257 8.862325 ACCTTGATTCACAGTATTCAAACATA 57.138 30.769 0.00 0.00 0.00 2.29
1241 1265 7.227512 GCTATGCTAACCTTGATTCACAGTATT 59.772 37.037 0.00 0.00 0.00 1.89
1287 1312 2.229784 CCTTGGCTGAGAAAACCATCAC 59.770 50.000 0.00 0.00 32.39 3.06
1340 1365 4.063689 GCATGATCCACATAGGTCTCTTG 58.936 47.826 0.00 0.00 37.46 3.02
1345 1370 3.812053 GACTTGCATGATCCACATAGGTC 59.188 47.826 6.60 0.00 37.46 3.85
1459 1669 2.989166 GCCACTTCACTTGCATAAAAGC 59.011 45.455 0.00 0.00 0.00 3.51
1479 1689 0.941542 TACACCAAACACTTCTGCGC 59.058 50.000 0.00 0.00 0.00 6.09
1480 1690 3.003275 ACAATACACCAAACACTTCTGCG 59.997 43.478 0.00 0.00 0.00 5.18
1488 1698 5.186021 ACCAAGACAAACAATACACCAAACA 59.814 36.000 0.00 0.00 0.00 2.83
1519 1731 6.335777 AGAAAAATAAGCTGCTAGGCAAATG 58.664 36.000 0.90 0.00 38.41 2.32
1598 1811 0.809636 CGCTCGGACATGCCACATTA 60.810 55.000 0.00 0.00 35.94 1.90
1920 2141 8.755028 TGCAAGTTAATAGTCAAGTACAGGATA 58.245 33.333 0.00 0.00 0.00 2.59
1983 2232 2.861147 AACCCAGGCTCAAGAAGTAC 57.139 50.000 0.00 0.00 0.00 2.73
2151 2483 5.618056 TTGTTTGAAAGAGCTAGCATCAG 57.382 39.130 18.83 0.00 0.00 2.90
2155 2487 5.125417 ACACTTTTGTTTGAAAGAGCTAGCA 59.875 36.000 18.83 0.00 38.60 3.49
2173 2505 5.170748 CACAAAAAGAGAGCCAAACACTTT 58.829 37.500 0.00 0.00 33.18 2.66
2176 2508 4.105486 GACACAAAAAGAGAGCCAAACAC 58.895 43.478 0.00 0.00 0.00 3.32
2243 2582 6.804534 TGAAAGCAAAATGACGTTTTAGTG 57.195 33.333 5.08 0.00 37.93 2.74
2244 2583 6.809196 TGTTGAAAGCAAAATGACGTTTTAGT 59.191 30.769 5.08 0.00 37.93 2.24
2245 2584 7.215696 TGTTGAAAGCAAAATGACGTTTTAG 57.784 32.000 5.08 2.45 37.93 1.85
2246 2585 6.254589 CCTGTTGAAAGCAAAATGACGTTTTA 59.745 34.615 5.08 0.00 37.93 1.52
2247 2586 5.063312 CCTGTTGAAAGCAAAATGACGTTTT 59.937 36.000 0.00 0.00 40.59 2.43
2248 2587 4.566360 CCTGTTGAAAGCAAAATGACGTTT 59.434 37.500 0.00 0.00 35.42 3.60
2251 2590 3.730715 GTCCTGTTGAAAGCAAAATGACG 59.269 43.478 0.00 0.00 35.42 4.35
2252 2591 4.936891 AGTCCTGTTGAAAGCAAAATGAC 58.063 39.130 0.00 0.00 37.23 3.06
2309 2651 7.843490 TTATTGATCTTTACAAAGACCCTCG 57.157 36.000 6.56 0.00 46.80 4.63
2400 2850 7.436673 CAGTATAAGCTAGGCTGAAGTTAGTTG 59.563 40.741 0.00 0.00 39.62 3.16
2463 2913 4.979815 CACCCTGAAAACAAATAAACGGAC 59.020 41.667 0.00 0.00 0.00 4.79
2519 2969 2.186076 GACGACATCAGGCTCGTTAAG 58.814 52.381 0.19 0.00 43.06 1.85
2536 2986 3.412386 AGGAAAACCTTCTTCCATGACG 58.588 45.455 0.00 0.00 44.19 4.35
2563 3013 7.094975 CCTTTAATTGATTGTTCACGACCTGTA 60.095 37.037 0.00 0.00 0.00 2.74
2569 3019 6.806249 GCATTCCTTTAATTGATTGTTCACGA 59.194 34.615 0.00 0.00 0.00 4.35
2590 3040 3.254166 AGCAAAACTCTGATGTTCGCATT 59.746 39.130 12.33 0.00 38.08 3.56
2596 3046 3.491447 GGTGCAAGCAAAACTCTGATGTT 60.491 43.478 0.00 0.00 0.00 2.71
2851 3301 5.718649 TTTCGTACTCAAAGATATGCTGC 57.281 39.130 0.00 0.00 0.00 5.25
2882 3332 2.351455 GGCAGAGACCTTGCTACTTTC 58.649 52.381 0.00 0.00 0.00 2.62
2905 3355 1.168714 GGTTCACAGCACCATCTTCC 58.831 55.000 0.00 0.00 34.04 3.46
2940 3390 7.242914 TGAATCATCGACAATTTCTGATGAG 57.757 36.000 14.84 0.00 42.37 2.90
2950 3400 4.940046 ACTGCTTCTTGAATCATCGACAAT 59.060 37.500 0.00 0.00 0.00 2.71
2954 3404 3.928992 GTGACTGCTTCTTGAATCATCGA 59.071 43.478 0.00 0.00 0.00 3.59
3031 3482 2.128729 GACTAAGAGAGGCGGCCAT 58.871 57.895 23.09 9.38 0.00 4.40
3038 3489 3.292460 AGGGATTGACGACTAAGAGAGG 58.708 50.000 0.00 0.00 0.00 3.69
3051 3502 4.042062 TCTGAGCTTTTCTTGAGGGATTGA 59.958 41.667 0.00 0.00 0.00 2.57
3053 3504 4.647564 TCTGAGCTTTTCTTGAGGGATT 57.352 40.909 0.00 0.00 0.00 3.01
3058 3509 4.142859 GCAGTCATCTGAGCTTTTCTTGAG 60.143 45.833 0.00 0.00 43.76 3.02
3059 3510 3.750130 GCAGTCATCTGAGCTTTTCTTGA 59.250 43.478 0.00 0.00 43.76 3.02
3062 3513 3.413846 TGCAGTCATCTGAGCTTTTCT 57.586 42.857 0.00 0.00 43.76 2.52
3088 3539 4.081862 GCAACTACCAAGGGGGAAATTAAC 60.082 45.833 0.00 0.00 41.15 2.01
3096 3548 1.937191 ATTTGCAACTACCAAGGGGG 58.063 50.000 0.00 0.00 44.81 5.40
3097 3549 4.277476 TCATATTTGCAACTACCAAGGGG 58.723 43.478 0.00 0.00 41.29 4.79
3101 3555 5.418524 ACATGCTCATATTTGCAACTACCAA 59.581 36.000 0.00 0.00 42.74 3.67
3138 3592 4.570772 TCCTGAATAGTGCATAAGAAACGC 59.429 41.667 0.00 0.00 0.00 4.84
3173 3636 7.441017 ACAACCTATTGAGCAATAAGCAAAAA 58.559 30.769 4.66 0.00 41.87 1.94
3174 3637 6.991938 ACAACCTATTGAGCAATAAGCAAAA 58.008 32.000 4.66 0.00 41.87 2.44
3175 3638 6.588719 ACAACCTATTGAGCAATAAGCAAA 57.411 33.333 4.66 0.00 41.87 3.68
3176 3639 6.015519 ACAACAACCTATTGAGCAATAAGCAA 60.016 34.615 4.66 0.00 41.87 3.91
3177 3640 5.476599 ACAACAACCTATTGAGCAATAAGCA 59.523 36.000 4.66 0.00 41.87 3.91
3178 3641 5.954335 ACAACAACCTATTGAGCAATAAGC 58.046 37.500 4.66 0.00 40.61 3.09
3189 3652 4.023291 CAAGCCCCATACAACAACCTATT 58.977 43.478 0.00 0.00 0.00 1.73
3192 3655 1.146982 ACAAGCCCCATACAACAACCT 59.853 47.619 0.00 0.00 0.00 3.50
3193 3656 1.627864 ACAAGCCCCATACAACAACC 58.372 50.000 0.00 0.00 0.00 3.77
3208 3671 8.057742 GCAATATGTTTTCAGTGAACAAACAAG 58.942 33.333 21.16 14.40 40.10 3.16
3225 3688 8.679100 CAATTCATTTCAAATGGGCAATATGTT 58.321 29.630 10.30 0.00 0.00 2.71
3226 3689 8.047911 TCAATTCATTTCAAATGGGCAATATGT 58.952 29.630 10.30 0.00 0.00 2.29
3227 3690 8.439993 TCAATTCATTTCAAATGGGCAATATG 57.560 30.769 10.30 5.15 0.00 1.78
3229 3692 7.849160 TCTCAATTCATTTCAAATGGGCAATA 58.151 30.769 10.30 0.00 0.00 1.90
3234 3697 5.583457 GCCTTCTCAATTCATTTCAAATGGG 59.417 40.000 10.30 1.61 0.00 4.00
3465 3942 7.660030 TGTAGATGACAATATCTCTGTTCCA 57.340 36.000 0.00 0.00 38.35 3.53
3698 5623 3.209410 GTTCATATCTGGGTTCCTGCTG 58.791 50.000 0.00 0.00 0.00 4.41
3713 5638 1.339535 TGGAGTGGCGCAATGTTCATA 60.340 47.619 10.83 0.00 0.00 2.15
3726 5651 0.322008 GAAGAGCTGGGTTGGAGTGG 60.322 60.000 0.00 0.00 0.00 4.00
3733 5658 0.759346 ACGACAAGAAGAGCTGGGTT 59.241 50.000 0.00 0.00 0.00 4.11
3819 5745 1.202521 TGAGTTTCTGCGTCTGCTTGA 60.203 47.619 0.00 0.00 43.34 3.02
3910 5837 1.007734 GTCGATGATAAGCGGCGGA 60.008 57.895 9.78 0.00 0.00 5.54
3919 5846 4.500887 GGGATCGTTTCCTTGTCGATGATA 60.501 45.833 4.10 0.00 44.75 2.15
3988 5915 4.156477 GAGGCCCTCTCTACTATGTCATT 58.844 47.826 2.64 0.00 39.38 2.57
4012 5939 2.893489 GGTTTCTGACAGGGAATTGCTT 59.107 45.455 1.81 0.00 0.00 3.91
4182 6116 1.347817 GAACTGCGTCAGGCTTCTCG 61.348 60.000 10.80 0.00 44.05 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.