Multiple sequence alignment - TraesCS7D01G415200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G415200 chr7D 100.000 4932 0 0 1 4932 533758292 533763223 0.000000e+00 9108.0
1 TraesCS7D01G415200 chr7D 90.361 166 11 4 3518 3683 533912123 533912283 3.870000e-51 213.0
2 TraesCS7D01G415200 chr7D 88.288 111 9 3 4225 4335 104918245 104918351 4.010000e-26 130.0
3 TraesCS7D01G415200 chr7B 93.876 4278 165 40 1 4217 573923364 573927605 0.000000e+00 6359.0
4 TraesCS7D01G415200 chr7B 87.647 510 59 4 4393 4900 573928316 573928823 1.530000e-164 590.0
5 TraesCS7D01G415200 chr7B 88.757 169 13 3 3518 3685 574476896 574477059 8.370000e-48 202.0
6 TraesCS7D01G415200 chr7B 100.000 37 0 0 4336 4372 573927612 573927648 8.860000e-08 69.4
7 TraesCS7D01G415200 chr7A 85.166 2346 221 64 1 2310 613177172 613179426 0.000000e+00 2287.0
8 TraesCS7D01G415200 chr7A 92.419 897 48 12 3334 4211 613180891 613181786 0.000000e+00 1262.0
9 TraesCS7D01G415200 chr7A 90.974 698 39 11 2422 3108 613179799 613180483 0.000000e+00 918.0
10 TraesCS7D01G415200 chr7A 87.562 402 26 11 2718 3108 613180503 613180891 1.260000e-120 444.0
11 TraesCS7D01G415200 chr7A 90.361 166 11 4 3518 3683 613639499 613639659 3.870000e-51 213.0
12 TraesCS7D01G415200 chr7A 87.000 100 11 2 1349 1448 613470113 613470210 1.450000e-20 111.0
13 TraesCS7D01G415200 chr7A 89.231 65 5 2 4328 4392 613181951 613182013 4.090000e-11 80.5
14 TraesCS7D01G415200 chrUn 84.048 420 42 18 964 1376 122475476 122475877 1.000000e-101 381.0
15 TraesCS7D01G415200 chr5D 87.826 115 9 2 4217 4331 486817946 486817837 4.010000e-26 130.0
16 TraesCS7D01G415200 chr6B 86.957 115 10 4 4217 4331 563124603 563124712 1.860000e-24 124.0
17 TraesCS7D01G415200 chr5A 86.441 118 11 5 4216 4333 556152755 556152867 1.860000e-24 124.0
18 TraesCS7D01G415200 chr3B 86.441 118 11 2 4217 4333 697975740 697975627 1.860000e-24 124.0
19 TraesCS7D01G415200 chr2D 86.957 115 10 4 4217 4331 557144701 557144810 1.860000e-24 124.0
20 TraesCS7D01G415200 chr6A 88.235 102 8 4 4225 4325 614780322 614780420 8.670000e-23 119.0
21 TraesCS7D01G415200 chr2B 87.619 105 10 3 4226 4330 747830283 747830182 8.670000e-23 119.0
22 TraesCS7D01G415200 chr3D 88.889 90 9 1 4242 4331 380046821 380046733 5.220000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G415200 chr7D 533758292 533763223 4931 False 9108.000000 9108 100.0000 1 4932 1 chr7D.!!$F2 4931
1 TraesCS7D01G415200 chr7B 573923364 573928823 5459 False 2339.466667 6359 93.8410 1 4900 3 chr7B.!!$F2 4899
2 TraesCS7D01G415200 chr7A 613177172 613182013 4841 False 998.300000 2287 89.0704 1 4392 5 chr7A.!!$F3 4391

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
370 374 1.218047 CGCCGATCCTGAAGAACCA 59.782 57.895 0.00 0.00 0.00 3.67 F
1815 1855 0.855349 CGATGATGCTCGGCTGTTAC 59.145 55.000 0.00 0.00 35.03 2.50 F
2838 3568 0.458025 GGGATCGTGAAGTGGTCGAC 60.458 60.000 7.13 7.13 36.46 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2006 2056 0.391661 GAACCAAGAGGAGCGATGCA 60.392 55.000 0.0 0.0 38.69 3.96 R
3805 4553 1.067821 GACTCGACTCCCATCCATGAC 59.932 57.143 0.0 0.0 0.00 3.06 R
4769 6223 0.102120 CTAGGACAAGAGGCAGCTCG 59.898 60.000 0.0 0.0 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 4.904853 AGGAGAAGTCTGAGAAAAGGAAGT 59.095 41.667 0.00 0.00 0.00 3.01
117 118 1.502640 GGTGTCTGACTCCGACTCG 59.497 63.158 12.62 0.00 32.70 4.18
291 295 3.570540 TGGATCTGAATCTGAGTCCGAT 58.429 45.455 10.99 10.99 32.12 4.18
370 374 1.218047 CGCCGATCCTGAAGAACCA 59.782 57.895 0.00 0.00 0.00 3.67
422 426 4.586001 GCCCACATATCATGTCCTTTTCAT 59.414 41.667 0.00 0.00 42.70 2.57
425 429 6.097270 CCCACATATCATGTCCTTTTCATTGT 59.903 38.462 0.00 0.00 42.70 2.71
471 475 3.950395 GCCCTTTCAAGAGATGTATTGCT 59.050 43.478 0.00 0.00 0.00 3.91
545 549 4.024670 CCTGTGCTAAGTAGTACCCTCTT 58.975 47.826 4.41 0.00 38.01 2.85
592 596 4.142609 TGGAAGTGCTTGAAGCTATAGG 57.857 45.455 18.94 0.00 42.97 2.57
655 660 7.703058 TCCTGCGACTATATTCTTCATCATA 57.297 36.000 0.00 0.00 0.00 2.15
701 706 6.358030 GTGCTGTGCAATAATCGTTTGATATC 59.642 38.462 0.00 0.00 41.47 1.63
746 755 2.433239 GACCTTACTAATTCCCTCGCCA 59.567 50.000 0.00 0.00 0.00 5.69
755 764 6.838382 ACTAATTCCCTCGCCAAATTATAGT 58.162 36.000 0.00 0.00 0.00 2.12
789 800 8.888579 TTGAAAAGGTCAAACTTTGTAAACAA 57.111 26.923 1.44 0.00 43.43 2.83
790 801 8.300495 TGAAAAGGTCAAACTTTGTAAACAAC 57.700 30.769 1.44 0.00 40.36 3.32
795 806 9.930693 AAGGTCAAACTTTGTAAACAACATAAA 57.069 25.926 1.44 0.00 38.10 1.40
838 849 7.811653 TGTCAATGCTTACGATACAAAATCAA 58.188 30.769 0.00 0.00 0.00 2.57
840 851 8.947940 GTCAATGCTTACGATACAAAATCAATC 58.052 33.333 0.00 0.00 0.00 2.67
845 856 7.078228 GCTTACGATACAAAATCAATCCCATC 58.922 38.462 0.00 0.00 0.00 3.51
847 858 8.512966 TTACGATACAAAATCAATCCCATCAA 57.487 30.769 0.00 0.00 0.00 2.57
860 871 7.663827 TCAATCCCATCAAATTCATTATGAGC 58.336 34.615 0.00 0.00 0.00 4.26
861 872 7.507956 TCAATCCCATCAAATTCATTATGAGCT 59.492 33.333 0.00 0.00 0.00 4.09
862 873 7.850935 ATCCCATCAAATTCATTATGAGCTT 57.149 32.000 0.00 0.00 0.00 3.74
863 874 7.046292 TCCCATCAAATTCATTATGAGCTTG 57.954 36.000 10.31 10.31 0.00 4.01
864 875 6.608405 TCCCATCAAATTCATTATGAGCTTGT 59.392 34.615 14.02 4.29 0.00 3.16
865 876 7.779326 TCCCATCAAATTCATTATGAGCTTGTA 59.221 33.333 14.02 5.98 0.00 2.41
866 877 8.582437 CCCATCAAATTCATTATGAGCTTGTAT 58.418 33.333 14.02 7.35 0.00 2.29
867 878 9.406828 CCATCAAATTCATTATGAGCTTGTATG 57.593 33.333 14.02 14.35 0.00 2.39
868 879 9.961265 CATCAAATTCATTATGAGCTTGTATGT 57.039 29.630 14.02 0.00 0.00 2.29
894 905 6.811253 TTTCCCATGTTGTATATATTCGGC 57.189 37.500 0.00 0.00 0.00 5.54
896 907 5.242434 TCCCATGTTGTATATATTCGGCAC 58.758 41.667 0.00 0.00 0.00 5.01
940 951 3.018149 TGCTTAACCACTTGACGGTTTT 58.982 40.909 0.00 0.00 44.46 2.43
941 952 3.444388 TGCTTAACCACTTGACGGTTTTT 59.556 39.130 0.00 0.00 44.46 1.94
950 961 5.163591 CCACTTGACGGTTTTTCTTTTACCT 60.164 40.000 0.00 0.00 0.00 3.08
1192 1204 2.042831 CAGGTTGGTAGCTGGCTGC 61.043 63.158 8.47 8.47 44.30 5.25
1195 1207 2.042831 GTTGGTAGCTGGCTGCCTG 61.043 63.158 25.20 20.46 46.84 4.85
1199 1211 4.105553 TAGCTGGCTGCCTGGCTG 62.106 66.667 33.04 20.46 44.23 4.85
1642 1681 3.320626 CTGTGACATACCAGCGATATGG 58.679 50.000 8.98 0.00 46.47 2.74
1710 1750 6.882610 TGTGAGTTGACTTTATGAATGCTT 57.117 33.333 0.00 0.00 0.00 3.91
1713 1753 6.003326 TGAGTTGACTTTATGAATGCTTCCA 58.997 36.000 0.00 0.00 0.00 3.53
1762 1802 2.164422 GCTGGAAACTTTCACTATGGGC 59.836 50.000 3.93 0.00 0.00 5.36
1815 1855 0.855349 CGATGATGCTCGGCTGTTAC 59.145 55.000 0.00 0.00 35.03 2.50
1896 1936 3.325293 AGCAATGTGAACTCGTCATCT 57.675 42.857 0.00 0.00 38.90 2.90
2075 2125 6.802608 CATGATTGCATCAGTAAGGTGATTT 58.197 36.000 0.00 0.00 43.53 2.17
2183 2233 8.417780 CATGAGTAATGTTCCTTCTTAGTCTG 57.582 38.462 0.00 0.00 0.00 3.51
2318 2378 4.032703 AGCCGCTAAAATAAGCATGTTG 57.967 40.909 0.00 0.00 42.91 3.33
2394 2470 6.012421 AGCCCCTCTCTGAAAAGTTTTAGTAT 60.012 38.462 0.00 0.00 0.00 2.12
2640 2962 6.581388 TTAGGAAATCATGACCAGGAATCT 57.419 37.500 0.00 0.00 0.00 2.40
2742 3064 3.511934 TGGTACATGGGTTTGGCAATTAC 59.488 43.478 0.00 0.00 0.00 1.89
2838 3568 0.458025 GGGATCGTGAAGTGGTCGAC 60.458 60.000 7.13 7.13 36.46 4.20
2978 3708 6.322456 TCAGTTTGGAATGTGTCACCATTTTA 59.678 34.615 0.00 0.00 35.24 1.52
3024 3754 9.905713 AGTATAAATGTGTCATATCTGTTGGTT 57.094 29.630 0.00 0.00 0.00 3.67
3110 3851 8.226819 TGTTCATATTTACCAGTGTTTGAACA 57.773 30.769 10.19 10.19 45.41 3.18
3134 3875 6.682423 AAATTTCTTTTTGACCCAAAGCTG 57.318 33.333 0.00 0.00 34.72 4.24
3135 3876 2.888834 TCTTTTTGACCCAAAGCTGC 57.111 45.000 0.00 0.00 34.72 5.25
3153 3894 4.093998 AGCTGCGATAATTTGTTCTCACAG 59.906 41.667 0.00 0.00 33.22 3.66
3269 4011 3.504906 ACAACAACAGCATCATTGGAGAG 59.495 43.478 0.00 0.00 0.00 3.20
3302 4044 8.101309 TGATCCTCATCCAAAACCTATCTAAA 57.899 34.615 0.00 0.00 0.00 1.85
3396 4138 7.549134 CACCATGCTCATTAGTAACTTCTGTTA 59.451 37.037 0.00 0.00 37.59 2.41
3427 4175 5.242393 AGCATTGTTTGACAAATGCTACTCT 59.758 36.000 20.61 2.87 43.81 3.24
3485 4233 7.505585 ACCTGACAATTTCCTTTATTTGACAGA 59.494 33.333 12.99 0.00 41.27 3.41
3495 4243 7.657336 TCCTTTATTTGACAGAAAAATTCGCT 58.343 30.769 0.00 0.00 34.02 4.93
3599 4347 3.347216 GAAGGAGTGGCTTGCTCATTAA 58.653 45.455 4.76 0.00 37.15 1.40
3781 4529 3.550436 CGAGGAGAGCTCGGGTAATTTAC 60.550 52.174 8.37 0.00 40.27 2.01
3805 4553 2.157738 CAACTCAAGAAAGGGCAGAGG 58.842 52.381 0.00 0.00 0.00 3.69
3813 4561 1.213926 GAAAGGGCAGAGGTCATGGAT 59.786 52.381 0.00 0.00 0.00 3.41
3853 4601 1.940613 ACTTGGAAGTTGCTTGACGAC 59.059 47.619 0.00 0.00 35.21 4.34
3856 4604 0.784778 GGAAGTTGCTTGACGACGAG 59.215 55.000 0.00 0.00 37.78 4.18
3902 4650 2.959465 TCTCTGGAGAGACAGTGACA 57.041 50.000 2.03 0.00 45.48 3.58
4045 4793 3.464720 TTGGCCATGGACCAAATTAGA 57.535 42.857 27.97 12.41 44.11 2.10
4106 4857 0.675633 CCCTTGCTTGGGTTGTTGAG 59.324 55.000 6.45 0.00 42.25 3.02
4136 4887 5.970592 TCTGAACATGATGTGAAGAGGTAG 58.029 41.667 0.00 0.00 0.00 3.18
4149 4900 2.702748 AGAGGTAGTTTGTCCCCTTGT 58.297 47.619 0.00 0.00 0.00 3.16
4152 4903 2.781174 AGGTAGTTTGTCCCCTTGTTGA 59.219 45.455 0.00 0.00 0.00 3.18
4153 4904 3.397955 AGGTAGTTTGTCCCCTTGTTGAT 59.602 43.478 0.00 0.00 0.00 2.57
4154 4905 4.600111 AGGTAGTTTGTCCCCTTGTTGATA 59.400 41.667 0.00 0.00 0.00 2.15
4155 4906 5.253096 AGGTAGTTTGTCCCCTTGTTGATAT 59.747 40.000 0.00 0.00 0.00 1.63
4156 4907 5.589050 GGTAGTTTGTCCCCTTGTTGATATC 59.411 44.000 0.00 0.00 0.00 1.63
4157 4908 5.520748 AGTTTGTCCCCTTGTTGATATCT 57.479 39.130 3.98 0.00 0.00 1.98
4159 4910 7.027874 AGTTTGTCCCCTTGTTGATATCTTA 57.972 36.000 3.98 0.00 0.00 2.10
4160 4911 6.884836 AGTTTGTCCCCTTGTTGATATCTTAC 59.115 38.462 3.98 3.21 0.00 2.34
4161 4912 5.367945 TGTCCCCTTGTTGATATCTTACC 57.632 43.478 3.98 0.00 0.00 2.85
4162 4913 4.785914 TGTCCCCTTGTTGATATCTTACCA 59.214 41.667 3.98 0.00 0.00 3.25
4165 4916 6.099269 GTCCCCTTGTTGATATCTTACCACTA 59.901 42.308 3.98 0.00 0.00 2.74
4168 4926 7.998964 CCCCTTGTTGATATCTTACCACTATTT 59.001 37.037 3.98 0.00 0.00 1.40
4231 4990 9.736023 CTCATAAAAGATTTTTCCGATAAAGGG 57.264 33.333 0.00 0.00 0.00 3.95
4232 4991 9.469097 TCATAAAAGATTTTTCCGATAAAGGGA 57.531 29.630 0.00 0.00 0.00 4.20
4272 5031 4.447724 CGTGAAGATATCAATTACACCCGG 59.552 45.833 5.32 0.00 40.50 5.73
4273 5032 4.213482 GTGAAGATATCAATTACACCCGGC 59.787 45.833 5.32 0.00 40.50 6.13
4274 5033 3.418684 AGATATCAATTACACCCGGCC 57.581 47.619 5.32 0.00 0.00 6.13
4275 5034 2.979678 AGATATCAATTACACCCGGCCT 59.020 45.455 5.32 0.00 0.00 5.19
4276 5035 2.922740 TATCAATTACACCCGGCCTC 57.077 50.000 0.00 0.00 0.00 4.70
4279 5038 1.077716 AATTACACCCGGCCTCTGC 60.078 57.895 0.00 0.00 0.00 4.26
4281 5040 2.536997 ATTACACCCGGCCTCTGCAC 62.537 60.000 0.00 0.00 40.13 4.57
4287 5046 2.594303 CGGCCTCTGCACCAACAA 60.594 61.111 0.00 0.00 40.13 2.83
4288 5047 2.620112 CGGCCTCTGCACCAACAAG 61.620 63.158 0.00 0.00 40.13 3.16
4289 5048 1.228245 GGCCTCTGCACCAACAAGA 60.228 57.895 0.00 0.00 40.13 3.02
4292 5051 2.648059 GCCTCTGCACCAACAAGATAT 58.352 47.619 0.00 0.00 37.47 1.63
4293 5052 2.615912 GCCTCTGCACCAACAAGATATC 59.384 50.000 0.00 0.00 37.47 1.63
4295 5054 2.868583 CTCTGCACCAACAAGATATCGG 59.131 50.000 0.00 0.00 0.00 4.18
4296 5055 2.499693 TCTGCACCAACAAGATATCGGA 59.500 45.455 0.00 0.00 0.00 4.55
4297 5056 3.055458 TCTGCACCAACAAGATATCGGAA 60.055 43.478 0.00 0.00 0.00 4.30
4298 5057 3.270027 TGCACCAACAAGATATCGGAAG 58.730 45.455 0.00 0.00 0.00 3.46
4300 5059 3.309954 GCACCAACAAGATATCGGAAGAC 59.690 47.826 0.00 0.00 46.97 3.01
4301 5060 4.503910 CACCAACAAGATATCGGAAGACA 58.496 43.478 0.00 0.00 46.97 3.41
4305 5064 5.817296 CCAACAAGATATCGGAAGACATCAA 59.183 40.000 0.00 0.00 46.25 2.57
4306 5065 6.018425 CCAACAAGATATCGGAAGACATCAAG 60.018 42.308 0.00 0.00 46.25 3.02
4307 5066 5.605534 ACAAGATATCGGAAGACATCAAGG 58.394 41.667 0.00 0.00 46.25 3.61
4310 5069 6.035368 AGATATCGGAAGACATCAAGGATG 57.965 41.667 4.74 4.74 46.25 3.51
4311 5070 2.315925 TCGGAAGACATCAAGGATGC 57.684 50.000 6.15 0.38 43.15 3.91
4312 5071 1.554617 TCGGAAGACATCAAGGATGCA 59.445 47.619 6.15 0.00 43.15 3.96
4313 5072 1.667724 CGGAAGACATCAAGGATGCAC 59.332 52.381 6.15 1.88 43.15 4.57
4314 5073 2.715046 GGAAGACATCAAGGATGCACA 58.285 47.619 6.15 0.00 43.15 4.57
4315 5074 2.421424 GGAAGACATCAAGGATGCACAC 59.579 50.000 6.15 0.00 43.15 3.82
4316 5075 2.865119 AGACATCAAGGATGCACACA 57.135 45.000 6.15 0.00 43.15 3.72
4318 5077 2.039480 AGACATCAAGGATGCACACAGT 59.961 45.455 6.15 0.00 43.15 3.55
4321 5080 2.636647 TCAAGGATGCACACAGTCAA 57.363 45.000 0.00 0.00 0.00 3.18
4322 5081 2.929641 TCAAGGATGCACACAGTCAAA 58.070 42.857 0.00 0.00 0.00 2.69
4323 5082 3.286353 TCAAGGATGCACACAGTCAAAA 58.714 40.909 0.00 0.00 0.00 2.44
4325 5084 3.715628 AGGATGCACACAGTCAAAAAC 57.284 42.857 0.00 0.00 0.00 2.43
4326 5085 3.023119 AGGATGCACACAGTCAAAAACA 58.977 40.909 0.00 0.00 0.00 2.83
4372 5179 7.759433 ACAACATATGCCTGCTTTTAATAACAC 59.241 33.333 1.58 0.00 0.00 3.32
4374 5181 7.257722 ACATATGCCTGCTTTTAATAACACAC 58.742 34.615 1.58 0.00 0.00 3.82
4376 5183 4.865776 TGCCTGCTTTTAATAACACACAC 58.134 39.130 0.00 0.00 0.00 3.82
4380 5187 6.256757 GCCTGCTTTTAATAACACACACAAAA 59.743 34.615 0.00 0.00 0.00 2.44
4383 5190 8.534333 TGCTTTTAATAACACACACAAAAACA 57.466 26.923 0.00 0.00 0.00 2.83
4384 5191 8.436200 TGCTTTTAATAACACACACAAAAACAC 58.564 29.630 0.00 0.00 0.00 3.32
4385 5192 8.436200 GCTTTTAATAACACACACAAAAACACA 58.564 29.630 0.00 0.00 0.00 3.72
4389 5196 7.754069 AATAACACACACAAAAACACATGAG 57.246 32.000 0.00 0.00 0.00 2.90
4390 5197 4.782019 ACACACACAAAAACACATGAGT 57.218 36.364 0.00 0.00 0.00 3.41
4391 5198 5.888691 ACACACACAAAAACACATGAGTA 57.111 34.783 0.00 0.00 0.00 2.59
4393 5200 7.561021 ACACACACAAAAACACATGAGTATA 57.439 32.000 0.00 0.00 0.00 1.47
4394 5201 7.990917 ACACACACAAAAACACATGAGTATAA 58.009 30.769 0.00 0.00 0.00 0.98
4469 5923 1.901591 ATGCAAATATCGCAGGAGGG 58.098 50.000 0.00 0.00 43.88 4.30
4493 5947 1.668151 GTGAGCCTCACCGTGGTTC 60.668 63.158 14.04 0.00 41.37 3.62
4495 5949 2.847234 AGCCTCACCGTGGTTCCA 60.847 61.111 0.00 0.00 0.00 3.53
4542 5996 5.046231 AGGTCTACTTTTCATCCCTCAACTC 60.046 44.000 0.00 0.00 0.00 3.01
4546 6000 8.095169 GTCTACTTTTCATCCCTCAACTCTTTA 58.905 37.037 0.00 0.00 0.00 1.85
4547 6001 8.656806 TCTACTTTTCATCCCTCAACTCTTTAA 58.343 33.333 0.00 0.00 0.00 1.52
4590 6044 6.463897 CCTCAACTCCTAAACCAGTCAACTTA 60.464 42.308 0.00 0.00 0.00 2.24
4612 6066 2.038033 CACCCCTAACTCTTCAAACCGA 59.962 50.000 0.00 0.00 0.00 4.69
4620 6074 5.638596 AACTCTTCAAACCGAACAAGTTT 57.361 34.783 0.00 0.00 37.93 2.66
4628 6082 3.397849 ACCGAACAAGTTTAGTCCCTC 57.602 47.619 0.00 0.00 0.00 4.30
4640 6094 4.501285 TCCCTCGTCTCGGCCGAT 62.501 66.667 31.19 0.00 33.27 4.18
4641 6095 4.271816 CCCTCGTCTCGGCCGATG 62.272 72.222 31.19 22.08 33.27 3.84
4642 6096 4.271816 CCTCGTCTCGGCCGATGG 62.272 72.222 31.19 18.86 33.27 3.51
4668 6122 3.643978 GCGCATCATCCACGAGGC 61.644 66.667 0.30 0.00 39.27 4.70
4731 6185 1.804326 GTCATCCGTCGTTCCACCG 60.804 63.158 0.00 0.00 0.00 4.94
4735 6189 2.275547 ATCCGTCGTTCCACCGTAGC 62.276 60.000 0.00 0.00 0.00 3.58
4739 6193 2.505557 CGTTCCACCGTAGCCGTC 60.506 66.667 0.00 0.00 0.00 4.79
4748 6202 0.665369 CCGTAGCCGTCGTTGTTCTT 60.665 55.000 0.00 0.00 0.00 2.52
4756 6210 1.331680 CGTCGTTGTTCTTTGTGTCGG 60.332 52.381 0.00 0.00 0.00 4.79
4759 6213 1.931172 CGTTGTTCTTTGTGTCGGAGT 59.069 47.619 0.00 0.00 0.00 3.85
4765 6219 1.544691 TCTTTGTGTCGGAGTAGCTCC 59.455 52.381 5.15 5.15 46.44 4.70
4786 6240 2.977178 CGAGCTGCCTCTTGTCCT 59.023 61.111 0.00 0.00 35.90 3.85
4798 6252 2.503356 CTCTTGTCCTAGTTCATGCCCT 59.497 50.000 0.00 0.00 0.00 5.19
4799 6253 2.237143 TCTTGTCCTAGTTCATGCCCTG 59.763 50.000 0.00 0.00 0.00 4.45
4800 6254 1.951209 TGTCCTAGTTCATGCCCTGA 58.049 50.000 0.00 0.00 0.00 3.86
4801 6255 2.481441 TGTCCTAGTTCATGCCCTGAT 58.519 47.619 0.00 0.00 32.72 2.90
4802 6256 2.171237 TGTCCTAGTTCATGCCCTGATG 59.829 50.000 0.00 0.00 32.72 3.07
4823 6278 2.757099 GGTACGGCCCGGAAGAGA 60.757 66.667 8.57 0.00 0.00 3.10
4848 6303 1.133513 TGACTGCTTTGGACCAATGGT 60.134 47.619 18.88 3.74 39.44 3.55
4851 6306 2.094675 CTGCTTTGGACCAATGGTAGG 58.905 52.381 18.88 0.00 35.25 3.18
4859 6314 6.529084 TTGGACCAATGGTAGGATAATGAT 57.471 37.500 4.23 0.00 35.25 2.45
4863 6318 6.240292 GGACCAATGGTAGGATAATGATTCCT 60.240 42.308 4.23 0.00 45.59 3.36
4870 6325 8.561536 TGGTAGGATAATGATTCCTTTGTCTA 57.438 34.615 0.00 0.00 40.84 2.59
4871 6326 8.998814 TGGTAGGATAATGATTCCTTTGTCTAA 58.001 33.333 0.00 0.00 40.84 2.10
4912 6367 1.260544 AAAAGGTCAGGCAATCTGGC 58.739 50.000 0.00 0.00 46.86 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 2.158769 TGCTCTTTGACTTGCTCCTTGA 60.159 45.455 0.00 0.00 0.00 3.02
117 118 1.069358 GTCCCCGATGATTCAGAGTCC 59.931 57.143 0.00 0.00 0.00 3.85
186 187 1.546961 TCTTCTTGTCCTCCGAGTCC 58.453 55.000 0.00 0.00 0.00 3.85
291 295 3.055891 TGCCGTCAGAATCAGAATCAGAA 60.056 43.478 0.00 0.00 0.00 3.02
370 374 2.188994 GCATCTGGCGCCTTCTCT 59.811 61.111 29.70 4.78 0.00 3.10
471 475 7.201609 GCGTTCAGGAAATCAACTGATACATTA 60.202 37.037 0.00 0.00 42.73 1.90
592 596 3.378427 GGCATCACAGGATAGGAAACAAC 59.622 47.826 0.00 0.00 30.87 3.32
676 681 3.820689 TCAAACGATTATTGCACAGCAC 58.179 40.909 0.00 0.00 38.71 4.40
701 706 9.618410 GTCAAAATGTTTATCTTCACAAAAACG 57.382 29.630 0.00 0.00 35.16 3.60
734 740 4.278419 GCACTATAATTTGGCGAGGGAATT 59.722 41.667 0.00 0.00 0.00 2.17
736 742 3.211045 GCACTATAATTTGGCGAGGGAA 58.789 45.455 0.00 0.00 0.00 3.97
764 773 8.766151 GTTGTTTACAAAGTTTGACCTTTTCAA 58.234 29.630 22.23 13.02 38.86 2.69
766 775 8.300495 TGTTGTTTACAAAGTTTGACCTTTTC 57.700 30.769 22.23 7.99 37.63 2.29
806 817 7.589395 TGTATCGTAAGCATTGACAAATTTGT 58.411 30.769 23.49 23.49 40.43 2.83
807 818 8.446489 TTGTATCGTAAGCATTGACAAATTTG 57.554 30.769 16.67 16.67 37.18 2.32
808 819 9.469807 TTTTGTATCGTAAGCATTGACAAATTT 57.530 25.926 0.00 0.00 35.80 1.82
814 825 8.841444 ATTGATTTTGTATCGTAAGCATTGAC 57.159 30.769 0.00 0.00 37.18 3.18
819 830 5.883115 TGGGATTGATTTTGTATCGTAAGCA 59.117 36.000 0.00 0.00 37.18 3.91
820 831 6.371809 TGGGATTGATTTTGTATCGTAAGC 57.628 37.500 0.00 0.00 37.18 3.09
826 837 9.820725 TGAATTTGATGGGATTGATTTTGTATC 57.179 29.630 0.00 0.00 0.00 2.24
838 849 7.289317 ACAAGCTCATAATGAATTTGATGGGAT 59.711 33.333 0.00 0.00 0.00 3.85
840 851 6.812998 ACAAGCTCATAATGAATTTGATGGG 58.187 36.000 0.00 0.00 0.00 4.00
873 884 5.012664 AGTGCCGAATATATACAACATGGGA 59.987 40.000 0.00 0.00 0.00 4.37
874 885 5.122239 CAGTGCCGAATATATACAACATGGG 59.878 44.000 0.00 0.00 0.00 4.00
875 886 5.700832 ACAGTGCCGAATATATACAACATGG 59.299 40.000 0.00 0.00 0.00 3.66
876 887 6.785488 ACAGTGCCGAATATATACAACATG 57.215 37.500 0.00 0.00 0.00 3.21
877 888 8.896320 TTTACAGTGCCGAATATATACAACAT 57.104 30.769 0.00 0.00 0.00 2.71
878 889 8.769891 CATTTACAGTGCCGAATATATACAACA 58.230 33.333 0.00 0.00 0.00 3.33
879 890 8.770828 ACATTTACAGTGCCGAATATATACAAC 58.229 33.333 0.00 0.00 0.00 3.32
880 891 8.896320 ACATTTACAGTGCCGAATATATACAA 57.104 30.769 0.00 0.00 0.00 2.41
881 892 8.896320 AACATTTACAGTGCCGAATATATACA 57.104 30.769 0.00 0.00 0.00 2.29
882 893 8.984764 TGAACATTTACAGTGCCGAATATATAC 58.015 33.333 0.00 0.00 0.00 1.47
883 894 9.719355 ATGAACATTTACAGTGCCGAATATATA 57.281 29.630 0.00 0.00 0.00 0.86
894 905 7.369803 AGAGCTGTAATGAACATTTACAGTG 57.630 36.000 19.21 0.00 37.50 3.66
896 907 6.744537 GCAAGAGCTGTAATGAACATTTACAG 59.255 38.462 15.72 15.72 37.50 2.74
940 951 5.464168 CGGAAGACTCGTTAGGTAAAAGAA 58.536 41.667 0.00 0.00 0.00 2.52
941 952 4.616835 GCGGAAGACTCGTTAGGTAAAAGA 60.617 45.833 0.00 0.00 0.00 2.52
950 961 0.445436 GACTCGCGGAAGACTCGTTA 59.555 55.000 6.13 0.00 0.00 3.18
1026 1038 2.815298 GACGAGGAGCGAGACGAGG 61.815 68.421 0.00 0.00 44.57 4.63
1030 1042 3.519930 GGGGACGAGGAGCGAGAC 61.520 72.222 0.00 0.00 44.57 3.36
1248 1271 3.403057 CGCCACCTGACAACGACG 61.403 66.667 0.00 0.00 0.00 5.12
1444 1467 1.142748 CAGCGGCTGTAAGAGAGGG 59.857 63.158 21.60 0.00 34.07 4.30
1446 1469 4.100981 GCAGCGGCTGTAAGAGAG 57.899 61.111 28.88 3.61 34.07 3.20
1522 1548 1.460504 CACATGACATGAGCAAGGCT 58.539 50.000 22.19 0.00 43.88 4.58
1642 1681 1.940613 AGAGCACCAACTTTGTCGTTC 59.059 47.619 0.00 0.00 0.00 3.95
1710 1750 3.753815 TGACATCTGAATGCAAACTGGA 58.246 40.909 0.00 0.00 36.26 3.86
1713 1753 4.008330 CCTCTGACATCTGAATGCAAACT 58.992 43.478 0.00 0.00 36.26 2.66
1762 1802 9.909644 ACAAGTAAATAGGCGATAATAGTGTAG 57.090 33.333 0.00 0.00 0.00 2.74
1815 1855 2.224378 ACAGGCCACATCAGATAATCCG 60.224 50.000 5.01 0.00 0.00 4.18
1896 1936 4.288626 AGTGTTAAACCCCTAAGCATCAGA 59.711 41.667 0.00 0.00 0.00 3.27
1970 2012 7.093771 TGCATACAAGAGAGAACTCACTCAATA 60.094 37.037 6.88 0.00 44.79 1.90
1973 2015 4.524328 TGCATACAAGAGAGAACTCACTCA 59.476 41.667 6.88 0.00 44.79 3.41
2006 2056 0.391661 GAACCAAGAGGAGCGATGCA 60.392 55.000 0.00 0.00 38.69 3.96
2058 2108 3.191162 TGCACAAATCACCTTACTGATGC 59.809 43.478 0.00 0.00 30.92 3.91
2075 2125 2.297701 GGAGTTTGGTCTCTTTGCACA 58.702 47.619 0.00 0.00 35.11 4.57
2134 2184 6.127842 TGTTCATGTTGAATGTGGATCTGATG 60.128 38.462 0.00 0.00 38.79 3.07
2284 2344 0.616679 AGCGGCTACCCCAAGAGTTA 60.617 55.000 0.00 0.00 0.00 2.24
2318 2378 2.311124 ACTATTTACTCGCAGGCCAC 57.689 50.000 5.01 0.00 0.00 5.01
2355 2429 2.757314 GAGGGGCTGATGGAAAAGAAAG 59.243 50.000 0.00 0.00 0.00 2.62
2640 2962 1.816835 AGTTCCTCTCGCGTCATTGTA 59.183 47.619 5.77 0.00 0.00 2.41
2838 3568 8.165239 TGATCCATCCATAAGTTTTAATTCCG 57.835 34.615 0.00 0.00 0.00 4.30
3024 3754 8.458573 TCAAACAGAAAAGGCAAGAGTAATAA 57.541 30.769 0.00 0.00 0.00 1.40
3110 3851 6.404623 GCAGCTTTGGGTCAAAAAGAAATTTT 60.405 34.615 0.00 0.00 41.93 1.82
3128 3869 5.048782 TGTGAGAACAAATTATCGCAGCTTT 60.049 36.000 0.00 0.00 40.64 3.51
3134 3875 4.340894 TGCTGTGAGAACAAATTATCGC 57.659 40.909 0.00 0.00 37.13 4.58
3135 3876 9.507280 AAAATATGCTGTGAGAACAAATTATCG 57.493 29.630 0.00 0.00 0.00 2.92
3179 3920 3.211045 TCTTTGTGCTTTCTGTACACCC 58.789 45.455 0.00 0.00 40.86 4.61
3180 3921 4.893424 TTCTTTGTGCTTTCTGTACACC 57.107 40.909 0.00 0.00 40.86 4.16
3181 3922 6.806739 AGTTTTTCTTTGTGCTTTCTGTACAC 59.193 34.615 0.00 0.00 40.86 2.90
3185 3927 6.476706 GCATAGTTTTTCTTTGTGCTTTCTGT 59.523 34.615 0.00 0.00 0.00 3.41
3302 4044 5.473162 GCTTTGCCTGATTGGGTTTAAAAAT 59.527 36.000 0.00 0.00 36.00 1.82
3307 4049 2.562298 CTGCTTTGCCTGATTGGGTTTA 59.438 45.455 0.00 0.00 36.00 2.01
3396 4138 7.604927 AGCATTTGTCAAACAATGCTGATAAAT 59.395 29.630 19.31 11.91 43.88 1.40
3485 4233 1.291906 CGGGGGCAAGCGAATTTTT 59.708 52.632 0.00 0.00 0.00 1.94
3495 4243 1.077357 AATGATAACGCGGGGGCAA 60.077 52.632 12.47 0.00 0.00 4.52
3582 4330 6.317391 AGAGTTAATTAATGAGCAAGCCACTC 59.683 38.462 0.31 0.00 34.62 3.51
3599 4347 4.974645 TGTCAAGGACACCAGAGTTAAT 57.025 40.909 0.00 0.00 37.67 1.40
3781 4529 2.551459 CTGCCCTTTCTTGAGTTGAGTG 59.449 50.000 0.00 0.00 0.00 3.51
3805 4553 1.067821 GACTCGACTCCCATCCATGAC 59.932 57.143 0.00 0.00 0.00 3.06
3813 4561 1.208776 TCTGTATCGACTCGACTCCCA 59.791 52.381 2.53 0.00 39.18 4.37
3853 4601 3.232213 TCGATCTTGGAAAGGTTCTCG 57.768 47.619 0.00 0.00 46.24 4.04
3856 4604 3.311048 GCTCATCGATCTTGGAAAGGTTC 59.689 47.826 0.00 0.00 46.24 3.62
4045 4793 7.782897 ATACAGCAGTATCATATACAGGTGT 57.217 36.000 22.27 22.27 44.05 4.16
4106 4857 4.318332 TCACATCATGTTCAGAACTGGTC 58.682 43.478 14.51 0.00 0.00 4.02
4136 4887 6.095021 GGTAAGATATCAACAAGGGGACAAAC 59.905 42.308 5.32 0.00 0.00 2.93
4152 4903 8.956426 CCACACACAAAAATAGTGGTAAGATAT 58.044 33.333 0.00 0.00 43.57 1.63
4153 4904 8.330466 CCACACACAAAAATAGTGGTAAGATA 57.670 34.615 0.00 0.00 43.57 1.98
4154 4905 7.214467 CCACACACAAAAATAGTGGTAAGAT 57.786 36.000 0.00 0.00 43.57 2.40
4155 4906 6.627395 CCACACACAAAAATAGTGGTAAGA 57.373 37.500 0.00 0.00 43.57 2.10
4161 4912 6.638063 CAGTCAATCCACACACAAAAATAGTG 59.362 38.462 0.00 0.00 42.56 2.74
4162 4913 6.321181 ACAGTCAATCCACACACAAAAATAGT 59.679 34.615 0.00 0.00 0.00 2.12
4165 4916 5.596836 ACAGTCAATCCACACACAAAAAT 57.403 34.783 0.00 0.00 0.00 1.82
4168 4926 5.065859 CAGTAACAGTCAATCCACACACAAA 59.934 40.000 0.00 0.00 0.00 2.83
4175 4933 3.403038 AGCACAGTAACAGTCAATCCAC 58.597 45.455 0.00 0.00 0.00 4.02
4244 5003 9.436957 GGGTGTAATTGATATCTTCACGATATT 57.563 33.333 3.98 0.00 43.65 1.28
4246 5005 7.088272 CGGGTGTAATTGATATCTTCACGATA 58.912 38.462 3.98 0.00 38.88 2.92
4249 5008 4.447724 CCGGGTGTAATTGATATCTTCACG 59.552 45.833 3.98 0.31 32.84 4.35
4250 5009 4.213482 GCCGGGTGTAATTGATATCTTCAC 59.787 45.833 2.18 6.14 32.84 3.18
4251 5010 4.385825 GCCGGGTGTAATTGATATCTTCA 58.614 43.478 2.18 0.00 0.00 3.02
4252 5011 3.751698 GGCCGGGTGTAATTGATATCTTC 59.248 47.826 2.18 0.00 0.00 2.87
4255 5014 3.008049 AGAGGCCGGGTGTAATTGATATC 59.992 47.826 2.18 0.00 0.00 1.63
4257 5016 2.104111 CAGAGGCCGGGTGTAATTGATA 59.896 50.000 2.18 0.00 0.00 2.15
4259 5018 0.251916 CAGAGGCCGGGTGTAATTGA 59.748 55.000 2.18 0.00 0.00 2.57
4260 5019 1.376609 GCAGAGGCCGGGTGTAATTG 61.377 60.000 2.18 0.00 0.00 2.32
4262 5021 2.297895 TGCAGAGGCCGGGTGTAAT 61.298 57.895 2.18 0.00 40.13 1.89
4263 5022 2.925706 TGCAGAGGCCGGGTGTAA 60.926 61.111 2.18 0.00 40.13 2.41
4264 5023 3.702048 GTGCAGAGGCCGGGTGTA 61.702 66.667 2.18 0.00 40.13 2.90
4270 5029 2.594303 TTGTTGGTGCAGAGGCCG 60.594 61.111 0.00 0.00 40.13 6.13
4272 5031 2.113860 TATCTTGTTGGTGCAGAGGC 57.886 50.000 0.00 0.00 41.68 4.70
4273 5032 2.868583 CGATATCTTGTTGGTGCAGAGG 59.131 50.000 0.34 0.00 0.00 3.69
4274 5033 2.868583 CCGATATCTTGTTGGTGCAGAG 59.131 50.000 0.34 0.00 0.00 3.35
4275 5034 2.499693 TCCGATATCTTGTTGGTGCAGA 59.500 45.455 0.34 0.00 0.00 4.26
4276 5035 2.905075 TCCGATATCTTGTTGGTGCAG 58.095 47.619 0.34 0.00 0.00 4.41
4279 5038 4.503910 TGTCTTCCGATATCTTGTTGGTG 58.496 43.478 0.34 0.00 0.00 4.17
4281 5040 5.359756 TGATGTCTTCCGATATCTTGTTGG 58.640 41.667 0.34 0.00 38.27 3.77
4282 5041 6.018425 CCTTGATGTCTTCCGATATCTTGTTG 60.018 42.308 0.34 0.00 38.27 3.33
4283 5042 6.051717 CCTTGATGTCTTCCGATATCTTGTT 58.948 40.000 0.34 0.00 38.27 2.83
4285 5044 5.847304 TCCTTGATGTCTTCCGATATCTTG 58.153 41.667 0.34 0.00 38.27 3.02
4287 5046 5.568423 GCATCCTTGATGTCTTCCGATATCT 60.568 44.000 0.34 0.00 41.60 1.98
4288 5047 4.629200 GCATCCTTGATGTCTTCCGATATC 59.371 45.833 6.01 0.00 41.60 1.63
4289 5048 4.040829 TGCATCCTTGATGTCTTCCGATAT 59.959 41.667 6.01 0.00 41.60 1.63
4292 5051 1.554617 TGCATCCTTGATGTCTTCCGA 59.445 47.619 6.01 0.00 41.60 4.55
4293 5052 1.667724 GTGCATCCTTGATGTCTTCCG 59.332 52.381 6.01 0.00 41.60 4.30
4295 5054 3.076621 TGTGTGCATCCTTGATGTCTTC 58.923 45.455 6.01 0.00 41.60 2.87
4296 5055 3.079578 CTGTGTGCATCCTTGATGTCTT 58.920 45.455 6.01 0.00 41.60 3.01
4297 5056 2.039480 ACTGTGTGCATCCTTGATGTCT 59.961 45.455 6.01 0.00 41.60 3.41
4298 5057 2.417933 GACTGTGTGCATCCTTGATGTC 59.582 50.000 6.01 0.13 41.60 3.06
4299 5058 2.224597 TGACTGTGTGCATCCTTGATGT 60.225 45.455 6.01 0.00 41.60 3.06
4300 5059 2.429478 TGACTGTGTGCATCCTTGATG 58.571 47.619 0.00 0.00 42.37 3.07
4301 5060 2.865119 TGACTGTGTGCATCCTTGAT 57.135 45.000 0.00 0.00 0.00 2.57
4305 5064 3.023119 TGTTTTTGACTGTGTGCATCCT 58.977 40.909 0.00 0.00 0.00 3.24
4306 5065 3.435105 TGTTTTTGACTGTGTGCATCC 57.565 42.857 0.00 0.00 0.00 3.51
4307 5066 5.776519 TTTTGTTTTTGACTGTGTGCATC 57.223 34.783 0.00 0.00 0.00 3.91
4310 5069 5.837586 TCTTTTTGTTTTTGACTGTGTGC 57.162 34.783 0.00 0.00 0.00 4.57
4311 5070 8.687824 ACTATCTTTTTGTTTTTGACTGTGTG 57.312 30.769 0.00 0.00 0.00 3.82
4380 5187 9.507329 AAGTCAGACAAATTATACTCATGTGTT 57.493 29.630 5.63 0.00 0.00 3.32
4462 5916 0.895559 GGCTCACCAAAACCCTCCTG 60.896 60.000 0.00 0.00 35.26 3.86
4464 5918 0.609406 GAGGCTCACCAAAACCCTCC 60.609 60.000 10.25 0.00 39.06 4.30
4465 5919 0.110486 TGAGGCTCACCAAAACCCTC 59.890 55.000 14.43 0.00 41.87 4.30
4486 5940 7.553881 AGTTCTATGAAATTATGGAACCACG 57.446 36.000 11.67 0.00 44.71 4.94
4487 5941 9.573133 CAAAGTTCTATGAAATTATGGAACCAC 57.427 33.333 11.67 0.00 44.71 4.16
4519 5973 5.046231 AGAGTTGAGGGATGAAAAGTAGACC 60.046 44.000 0.00 0.00 0.00 3.85
4522 5976 8.848474 TTAAAGAGTTGAGGGATGAAAAGTAG 57.152 34.615 0.00 0.00 0.00 2.57
4523 5977 8.656806 TCTTAAAGAGTTGAGGGATGAAAAGTA 58.343 33.333 0.00 0.00 0.00 2.24
4533 5987 7.469537 TCTAGACTTCTTAAAGAGTTGAGGG 57.530 40.000 0.00 0.00 36.30 4.30
4546 6000 9.095700 AGTTGAGGAACTAAATCTAGACTTCTT 57.904 33.333 0.00 0.00 40.85 2.52
4547 6001 8.658840 AGTTGAGGAACTAAATCTAGACTTCT 57.341 34.615 0.00 0.00 40.85 2.85
4564 6018 3.583228 TGACTGGTTTAGGAGTTGAGGA 58.417 45.455 0.00 0.00 0.00 3.71
4590 6044 2.224450 CGGTTTGAAGAGTTAGGGGTGT 60.224 50.000 0.00 0.00 0.00 4.16
4612 6066 3.305199 CGAGACGAGGGACTAAACTTGTT 60.305 47.826 0.00 0.00 41.55 2.83
4620 6074 2.124403 GGCCGAGACGAGGGACTA 60.124 66.667 0.00 0.00 41.55 2.59
4643 6097 3.344215 GATGATGCGCTCGGCCTG 61.344 66.667 9.73 0.00 42.61 4.85
4644 6098 4.615815 GGATGATGCGCTCGGCCT 62.616 66.667 9.73 0.00 42.61 5.19
4647 6101 3.333189 CGTGGATGATGCGCTCGG 61.333 66.667 9.73 0.00 0.00 4.63
4649 6103 1.953138 CCTCGTGGATGATGCGCTC 60.953 63.158 9.73 4.27 34.57 5.03
4723 6177 2.505557 CGACGGCTACGGTGGAAC 60.506 66.667 0.00 0.00 46.48 3.62
4725 6179 2.985282 AACGACGGCTACGGTGGA 60.985 61.111 0.00 0.00 46.48 4.02
4731 6185 1.862827 ACAAAGAACAACGACGGCTAC 59.137 47.619 0.00 0.00 0.00 3.58
4735 6189 1.331680 CGACACAAAGAACAACGACGG 60.332 52.381 0.00 0.00 0.00 4.79
4739 6193 1.931172 ACTCCGACACAAAGAACAACG 59.069 47.619 0.00 0.00 0.00 4.10
4765 6219 3.485431 CAAGAGGCAGCTCGCGTG 61.485 66.667 5.77 4.44 43.84 5.34
4769 6223 0.102120 CTAGGACAAGAGGCAGCTCG 59.898 60.000 0.00 0.00 0.00 5.03
4807 6261 2.783288 CCTCTCTTCCGGGCCGTAC 61.783 68.421 26.32 0.00 0.00 3.67
4818 6273 2.502295 CAAAGCAGTCAAGCCTCTCTT 58.498 47.619 0.00 0.00 34.78 2.85
4823 6278 0.538287 GGTCCAAAGCAGTCAAGCCT 60.538 55.000 0.00 0.00 34.23 4.58
4859 6314 4.218417 GGCAGCATCTTTTAGACAAAGGAA 59.782 41.667 0.00 0.00 33.91 3.36
4863 6318 4.082081 CCATGGCAGCATCTTTTAGACAAA 60.082 41.667 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.