Multiple sequence alignment - TraesCS7D01G414600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G414600 chr7D 100.000 2621 0 0 1 2621 532897280 532899900 0.000000e+00 4841.0
1 TraesCS7D01G414600 chr7D 89.803 814 34 18 1831 2621 533432131 533432918 0.000000e+00 998.0
2 TraesCS7D01G414600 chr7D 92.543 523 33 3 921 1442 533429987 533430504 0.000000e+00 745.0
3 TraesCS7D01G414600 chr7D 90.251 359 19 7 1495 1839 533430502 533430858 3.080000e-124 455.0
4 TraesCS7D01G414600 chr7D 91.200 125 11 0 775 899 533428267 533428391 1.250000e-38 171.0
5 TraesCS7D01G414600 chr7D 86.667 135 14 3 2224 2357 532899374 532899505 2.100000e-31 147.0
6 TraesCS7D01G414600 chr7D 86.667 135 14 3 2095 2226 532899503 532899636 2.100000e-31 147.0
7 TraesCS7D01G414600 chr7D 85.926 135 15 3 2224 2357 533432405 533432536 9.780000e-30 141.0
8 TraesCS7D01G414600 chr7D 86.957 92 9 3 2095 2183 533432534 533432625 1.660000e-17 100.0
9 TraesCS7D01G414600 chr7D 92.857 56 3 1 726 781 533428184 533428238 2.160000e-11 80.5
10 TraesCS7D01G414600 chr7D 92.683 41 3 0 2190 2230 533432616 533432656 2.820000e-05 60.2
11 TraesCS7D01G414600 chr7D 100.000 29 0 0 625 653 164757226 164757254 1.000000e-03 54.7
12 TraesCS7D01G414600 chr7A 90.167 1973 86 46 710 2621 612989692 612991617 0.000000e+00 2470.0
13 TraesCS7D01G414600 chr7A 82.787 122 15 5 457 574 612989556 612989675 1.280000e-18 104.0
14 TraesCS7D01G414600 chr7A 87.778 90 8 2 2095 2183 612991239 612991326 4.620000e-18 102.0
15 TraesCS7D01G414600 chr7B 92.364 1100 42 12 1558 2621 573260693 573261786 0.000000e+00 1528.0
16 TraesCS7D01G414600 chr7B 91.465 703 38 8 775 1465 573259378 573260070 0.000000e+00 946.0
17 TraesCS7D01G414600 chr7B 88.235 136 11 4 2095 2226 573261388 573261522 9.710000e-35 158.0
18 TraesCS7D01G414600 chr7B 85.821 134 15 3 2225 2357 573261260 573261390 3.520000e-29 139.0
19 TraesCS7D01G414600 chr4D 89.448 417 39 5 6 419 460665316 460664902 2.990000e-144 521.0
20 TraesCS7D01G414600 chr4D 88.969 417 41 5 6 419 460656564 460656150 6.470000e-141 510.0
21 TraesCS7D01G414600 chr2A 88.517 418 42 6 1 415 761285594 761286008 3.890000e-138 501.0
22 TraesCS7D01G414600 chr2A 87.952 415 46 4 4 414 564613677 564614091 1.090000e-133 486.0
23 TraesCS7D01G414600 chr4B 87.981 416 48 2 6 419 575046220 575045805 8.430000e-135 490.0
24 TraesCS7D01G414600 chr4B 88.078 411 47 2 8 416 575652542 575652952 1.090000e-133 486.0
25 TraesCS7D01G414600 chr4B 90.909 44 3 1 611 653 493196953 493196996 1.010000e-04 58.4
26 TraesCS7D01G414600 chr5D 87.740 416 44 6 7 416 62530147 62530561 1.820000e-131 479.0
27 TraesCS7D01G414600 chr5D 77.349 415 50 26 2223 2604 398907833 398908236 3.420000e-49 206.0
28 TraesCS7D01G414600 chr3D 87.321 418 47 6 4 416 156890867 156890451 8.490000e-130 473.0
29 TraesCS7D01G414600 chr1D 86.957 414 51 3 6 416 17049894 17049481 1.840000e-126 462.0
30 TraesCS7D01G414600 chr5B 90.000 110 8 3 2496 2604 479202926 479203033 3.520000e-29 139.0
31 TraesCS7D01G414600 chr2B 89.091 55 4 2 601 653 648814098 648814044 1.680000e-07 67.6
32 TraesCS7D01G414600 chr2B 90.909 44 3 1 611 653 694132619 694132662 1.010000e-04 58.4
33 TraesCS7D01G414600 chr5A 97.297 37 1 0 617 653 558244783 558244819 2.180000e-06 63.9
34 TraesCS7D01G414600 chr4A 97.297 37 1 0 617 653 712740723 712740759 2.180000e-06 63.9
35 TraesCS7D01G414600 chr4A 94.595 37 2 0 617 653 712769755 712769791 1.010000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G414600 chr7D 532897280 532899900 2620 False 1711.666667 4841 91.111333 1 2621 3 chr7D.!!$F2 2620
1 TraesCS7D01G414600 chr7D 533428184 533432918 4734 False 343.837500 998 90.277500 726 2621 8 chr7D.!!$F3 1895
2 TraesCS7D01G414600 chr7A 612989556 612991617 2061 False 892.000000 2470 86.910667 457 2621 3 chr7A.!!$F1 2164
3 TraesCS7D01G414600 chr7B 573259378 573261786 2408 False 692.750000 1528 89.471250 775 2621 4 chr7B.!!$F1 1846

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
111 112 0.031585 CCGAGACAAACACCGACAGA 59.968 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1671 3861 0.25589 ATACACAGTGGGGCATGGTC 59.744 55.0 5.31 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.116328 TCTGCCGCCGACGAAGAG 62.116 66.667 0.00 0.00 43.93 2.85
18 19 4.116328 CTGCCGCCGACGAAGAGA 62.116 66.667 0.00 0.00 43.93 3.10
19 20 3.626680 CTGCCGCCGACGAAGAGAA 62.627 63.158 0.00 0.00 43.93 2.87
20 21 2.881352 GCCGCCGACGAAGAGAAG 60.881 66.667 0.00 0.00 43.93 2.85
21 22 2.881352 CCGCCGACGAAGAGAAGC 60.881 66.667 0.00 0.00 43.93 3.86
22 23 3.241059 CGCCGACGAAGAGAAGCG 61.241 66.667 0.00 0.00 43.93 4.68
23 24 2.126424 GCCGACGAAGAGAAGCGT 60.126 61.111 0.00 0.00 44.33 5.07
24 25 1.136147 GCCGACGAAGAGAAGCGTA 59.864 57.895 0.00 0.00 41.34 4.42
25 26 0.862283 GCCGACGAAGAGAAGCGTAG 60.862 60.000 0.00 0.00 41.34 3.51
26 27 0.725686 CCGACGAAGAGAAGCGTAGA 59.274 55.000 0.00 0.00 41.34 2.59
27 28 1.331138 CCGACGAAGAGAAGCGTAGAT 59.669 52.381 0.00 0.00 41.34 1.98
28 29 2.600320 CCGACGAAGAGAAGCGTAGATC 60.600 54.545 0.00 0.00 41.34 2.75
29 30 2.030579 CGACGAAGAGAAGCGTAGATCA 59.969 50.000 0.00 0.00 41.34 2.92
30 31 3.613563 GACGAAGAGAAGCGTAGATCAG 58.386 50.000 0.00 0.00 41.34 2.90
31 32 3.271729 ACGAAGAGAAGCGTAGATCAGA 58.728 45.455 0.00 0.00 39.21 3.27
32 33 3.690139 ACGAAGAGAAGCGTAGATCAGAA 59.310 43.478 0.00 0.00 39.21 3.02
33 34 4.201871 ACGAAGAGAAGCGTAGATCAGAAG 60.202 45.833 0.00 0.00 39.21 2.85
34 35 4.606961 GAAGAGAAGCGTAGATCAGAAGG 58.393 47.826 0.00 0.00 0.00 3.46
35 36 3.626930 AGAGAAGCGTAGATCAGAAGGT 58.373 45.455 0.00 0.00 0.00 3.50
36 37 4.020543 AGAGAAGCGTAGATCAGAAGGTT 58.979 43.478 0.00 0.00 0.00 3.50
37 38 4.097286 AGAGAAGCGTAGATCAGAAGGTTC 59.903 45.833 13.70 13.70 38.96 3.62
38 39 3.131400 AGAAGCGTAGATCAGAAGGTTCC 59.869 47.826 16.26 5.21 39.33 3.62
39 40 2.457598 AGCGTAGATCAGAAGGTTCCA 58.542 47.619 0.00 0.00 0.00 3.53
40 41 2.832129 AGCGTAGATCAGAAGGTTCCAA 59.168 45.455 0.00 0.00 0.00 3.53
41 42 2.930682 GCGTAGATCAGAAGGTTCCAAC 59.069 50.000 0.00 0.00 0.00 3.77
52 53 2.922740 GGTTCCAACCTGTAGACACA 57.077 50.000 0.83 0.00 45.75 3.72
53 54 2.490991 GGTTCCAACCTGTAGACACAC 58.509 52.381 0.83 0.00 45.75 3.82
54 55 2.132762 GTTCCAACCTGTAGACACACG 58.867 52.381 0.00 0.00 0.00 4.49
55 56 1.694844 TCCAACCTGTAGACACACGA 58.305 50.000 0.00 0.00 0.00 4.35
56 57 2.033372 TCCAACCTGTAGACACACGAA 58.967 47.619 0.00 0.00 0.00 3.85
57 58 2.132762 CCAACCTGTAGACACACGAAC 58.867 52.381 0.00 0.00 0.00 3.95
58 59 2.482316 CCAACCTGTAGACACACGAACA 60.482 50.000 0.00 0.00 0.00 3.18
59 60 2.503920 ACCTGTAGACACACGAACAC 57.496 50.000 0.00 0.00 0.00 3.32
60 61 1.752498 ACCTGTAGACACACGAACACA 59.248 47.619 0.00 0.00 0.00 3.72
61 62 2.223735 ACCTGTAGACACACGAACACAG 60.224 50.000 0.00 0.00 34.54 3.66
62 63 2.034179 CCTGTAGACACACGAACACAGA 59.966 50.000 0.00 0.00 36.37 3.41
63 64 3.043586 CTGTAGACACACGAACACAGAC 58.956 50.000 0.00 0.00 36.37 3.51
64 65 2.041966 GTAGACACACGAACACAGACG 58.958 52.381 0.00 0.00 0.00 4.18
65 66 0.736636 AGACACACGAACACAGACGA 59.263 50.000 0.00 0.00 0.00 4.20
66 67 1.133598 AGACACACGAACACAGACGAA 59.866 47.619 0.00 0.00 0.00 3.85
67 68 1.254570 GACACACGAACACAGACGAAC 59.745 52.381 0.00 0.00 0.00 3.95
68 69 0.226235 CACACGAACACAGACGAACG 59.774 55.000 0.00 0.00 0.00 3.95
69 70 0.099259 ACACGAACACAGACGAACGA 59.901 50.000 0.14 0.00 0.00 3.85
70 71 1.193644 CACGAACACAGACGAACGAA 58.806 50.000 0.14 0.00 0.00 3.85
71 72 1.187271 CACGAACACAGACGAACGAAG 59.813 52.381 0.14 0.00 0.00 3.79
72 73 1.064505 ACGAACACAGACGAACGAAGA 59.935 47.619 0.14 0.00 0.00 2.87
73 74 1.447201 CGAACACAGACGAACGAAGAC 59.553 52.381 0.14 0.00 0.00 3.01
74 75 2.456989 GAACACAGACGAACGAAGACA 58.543 47.619 0.14 0.00 0.00 3.41
75 76 2.572191 ACACAGACGAACGAAGACAA 57.428 45.000 0.14 0.00 0.00 3.18
76 77 2.460918 ACACAGACGAACGAAGACAAG 58.539 47.619 0.14 0.00 0.00 3.16
77 78 2.098607 ACACAGACGAACGAAGACAAGA 59.901 45.455 0.14 0.00 0.00 3.02
78 79 3.243434 ACACAGACGAACGAAGACAAGAT 60.243 43.478 0.14 0.00 0.00 2.40
79 80 3.362237 CACAGACGAACGAAGACAAGATC 59.638 47.826 0.14 0.00 0.00 2.75
80 81 2.917971 CAGACGAACGAAGACAAGATCC 59.082 50.000 0.14 0.00 0.00 3.36
81 82 2.557056 AGACGAACGAAGACAAGATCCA 59.443 45.455 0.14 0.00 0.00 3.41
82 83 2.662156 GACGAACGAAGACAAGATCCAC 59.338 50.000 0.14 0.00 0.00 4.02
83 84 2.035449 ACGAACGAAGACAAGATCCACA 59.965 45.455 0.14 0.00 0.00 4.17
84 85 3.254060 CGAACGAAGACAAGATCCACAT 58.746 45.455 0.00 0.00 0.00 3.21
85 86 3.679980 CGAACGAAGACAAGATCCACATT 59.320 43.478 0.00 0.00 0.00 2.71
86 87 4.434725 CGAACGAAGACAAGATCCACATTG 60.435 45.833 0.00 0.00 0.00 2.82
87 88 4.271696 ACGAAGACAAGATCCACATTGA 57.728 40.909 0.00 0.00 0.00 2.57
88 89 4.836825 ACGAAGACAAGATCCACATTGAT 58.163 39.130 0.00 0.00 0.00 2.57
89 90 4.872691 ACGAAGACAAGATCCACATTGATC 59.127 41.667 0.00 0.00 41.21 2.92
90 91 4.272018 CGAAGACAAGATCCACATTGATCC 59.728 45.833 0.00 0.00 41.73 3.36
91 92 4.849813 AGACAAGATCCACATTGATCCA 57.150 40.909 0.00 0.00 41.73 3.41
92 93 4.521146 AGACAAGATCCACATTGATCCAC 58.479 43.478 0.00 0.00 41.73 4.02
93 94 3.624777 ACAAGATCCACATTGATCCACC 58.375 45.455 0.00 0.00 41.73 4.61
94 95 2.615447 CAAGATCCACATTGATCCACCG 59.385 50.000 0.00 0.00 41.73 4.94
95 96 2.118679 AGATCCACATTGATCCACCGA 58.881 47.619 0.00 0.00 41.73 4.69
96 97 2.103771 AGATCCACATTGATCCACCGAG 59.896 50.000 0.00 0.00 41.73 4.63
97 98 1.567357 TCCACATTGATCCACCGAGA 58.433 50.000 0.00 0.00 0.00 4.04
98 99 1.207089 TCCACATTGATCCACCGAGAC 59.793 52.381 0.00 0.00 0.00 3.36
99 100 1.066215 CCACATTGATCCACCGAGACA 60.066 52.381 0.00 0.00 0.00 3.41
100 101 2.615240 CCACATTGATCCACCGAGACAA 60.615 50.000 0.00 0.00 0.00 3.18
101 102 3.073678 CACATTGATCCACCGAGACAAA 58.926 45.455 0.00 0.00 0.00 2.83
102 103 3.074412 ACATTGATCCACCGAGACAAAC 58.926 45.455 0.00 0.00 0.00 2.93
103 104 2.920724 TTGATCCACCGAGACAAACA 57.079 45.000 0.00 0.00 0.00 2.83
104 105 2.163818 TGATCCACCGAGACAAACAC 57.836 50.000 0.00 0.00 0.00 3.32
105 106 1.270625 TGATCCACCGAGACAAACACC 60.271 52.381 0.00 0.00 0.00 4.16
106 107 0.320421 ATCCACCGAGACAAACACCG 60.320 55.000 0.00 0.00 0.00 4.94
107 108 1.068417 CCACCGAGACAAACACCGA 59.932 57.895 0.00 0.00 0.00 4.69
108 109 1.219522 CCACCGAGACAAACACCGAC 61.220 60.000 0.00 0.00 0.00 4.79
109 110 0.528901 CACCGAGACAAACACCGACA 60.529 55.000 0.00 0.00 0.00 4.35
110 111 0.249322 ACCGAGACAAACACCGACAG 60.249 55.000 0.00 0.00 0.00 3.51
111 112 0.031585 CCGAGACAAACACCGACAGA 59.968 55.000 0.00 0.00 0.00 3.41
112 113 1.537348 CCGAGACAAACACCGACAGAA 60.537 52.381 0.00 0.00 0.00 3.02
113 114 2.404215 CGAGACAAACACCGACAGAAT 58.596 47.619 0.00 0.00 0.00 2.40
114 115 2.408704 CGAGACAAACACCGACAGAATC 59.591 50.000 0.00 0.00 0.00 2.52
115 116 3.654414 GAGACAAACACCGACAGAATCT 58.346 45.455 0.00 0.00 0.00 2.40
116 117 3.654414 AGACAAACACCGACAGAATCTC 58.346 45.455 0.00 0.00 0.00 2.75
117 118 2.404215 ACAAACACCGACAGAATCTCG 58.596 47.619 0.00 0.00 0.00 4.04
118 119 1.126846 CAAACACCGACAGAATCTCGC 59.873 52.381 0.00 0.00 0.00 5.03
119 120 0.732880 AACACCGACAGAATCTCGCG 60.733 55.000 0.00 0.00 0.00 5.87
120 121 1.136774 CACCGACAGAATCTCGCGA 59.863 57.895 9.26 9.26 0.00 5.87
121 122 0.863538 CACCGACAGAATCTCGCGAG 60.864 60.000 30.03 30.03 0.00 5.03
122 123 1.025113 ACCGACAGAATCTCGCGAGA 61.025 55.000 38.22 38.22 42.37 4.04
124 125 1.661743 CCGACAGAATCTCGCGAGATC 60.662 57.143 42.41 33.70 46.75 2.75
125 126 1.661743 CGACAGAATCTCGCGAGATCC 60.662 57.143 42.41 34.88 46.75 3.36
126 127 0.309302 ACAGAATCTCGCGAGATCCG 59.691 55.000 42.41 33.93 46.75 4.18
135 136 3.514417 CGAGATCCGCCAGAGACA 58.486 61.111 0.00 0.00 0.00 3.41
136 137 1.809869 CGAGATCCGCCAGAGACAA 59.190 57.895 0.00 0.00 0.00 3.18
137 138 0.173481 CGAGATCCGCCAGAGACAAA 59.827 55.000 0.00 0.00 0.00 2.83
138 139 1.646189 GAGATCCGCCAGAGACAAAC 58.354 55.000 0.00 0.00 0.00 2.93
139 140 0.250513 AGATCCGCCAGAGACAAACC 59.749 55.000 0.00 0.00 0.00 3.27
140 141 0.250513 GATCCGCCAGAGACAAACCT 59.749 55.000 0.00 0.00 0.00 3.50
141 142 0.250513 ATCCGCCAGAGACAAACCTC 59.749 55.000 0.00 0.00 0.00 3.85
142 143 1.376037 CCGCCAGAGACAAACCTCC 60.376 63.158 0.00 0.00 33.76 4.30
143 144 1.371183 CGCCAGAGACAAACCTCCA 59.629 57.895 0.00 0.00 33.76 3.86
144 145 0.951040 CGCCAGAGACAAACCTCCAC 60.951 60.000 0.00 0.00 33.76 4.02
145 146 0.108585 GCCAGAGACAAACCTCCACA 59.891 55.000 0.00 0.00 33.76 4.17
146 147 1.884235 CCAGAGACAAACCTCCACAC 58.116 55.000 0.00 0.00 33.76 3.82
147 148 1.502231 CAGAGACAAACCTCCACACG 58.498 55.000 0.00 0.00 33.76 4.49
148 149 0.249911 AGAGACAAACCTCCACACGC 60.250 55.000 0.00 0.00 33.76 5.34
149 150 1.227853 AGACAAACCTCCACACGCC 60.228 57.895 0.00 0.00 0.00 5.68
150 151 2.203294 ACAAACCTCCACACGCCC 60.203 61.111 0.00 0.00 0.00 6.13
151 152 2.113139 CAAACCTCCACACGCCCT 59.887 61.111 0.00 0.00 0.00 5.19
152 153 2.113139 AAACCTCCACACGCCCTG 59.887 61.111 0.00 0.00 0.00 4.45
153 154 4.643387 AACCTCCACACGCCCTGC 62.643 66.667 0.00 0.00 0.00 4.85
164 165 2.659897 GCCCTGCGACGATGCTAG 60.660 66.667 0.00 0.00 35.36 3.42
165 166 3.120105 CCCTGCGACGATGCTAGA 58.880 61.111 0.00 0.00 35.36 2.43
166 167 1.437573 CCCTGCGACGATGCTAGAA 59.562 57.895 0.00 0.00 35.36 2.10
167 168 0.179111 CCCTGCGACGATGCTAGAAA 60.179 55.000 0.00 0.00 35.36 2.52
168 169 0.924090 CCTGCGACGATGCTAGAAAC 59.076 55.000 0.00 0.00 35.36 2.78
169 170 1.629013 CTGCGACGATGCTAGAAACA 58.371 50.000 0.00 0.00 35.36 2.83
170 171 1.321743 CTGCGACGATGCTAGAAACAC 59.678 52.381 0.00 0.00 35.36 3.32
171 172 0.645868 GCGACGATGCTAGAAACACC 59.354 55.000 0.00 0.00 0.00 4.16
172 173 1.990799 CGACGATGCTAGAAACACCA 58.009 50.000 0.00 0.00 0.00 4.17
173 174 1.654105 CGACGATGCTAGAAACACCAC 59.346 52.381 0.00 0.00 0.00 4.16
174 175 2.000447 GACGATGCTAGAAACACCACC 59.000 52.381 0.00 0.00 0.00 4.61
175 176 1.346395 ACGATGCTAGAAACACCACCA 59.654 47.619 0.00 0.00 0.00 4.17
176 177 2.002586 CGATGCTAGAAACACCACCAG 58.997 52.381 0.00 0.00 0.00 4.00
177 178 2.359900 GATGCTAGAAACACCACCAGG 58.640 52.381 0.00 0.00 42.21 4.45
178 179 1.429930 TGCTAGAAACACCACCAGGA 58.570 50.000 0.00 0.00 38.69 3.86
179 180 1.071699 TGCTAGAAACACCACCAGGAC 59.928 52.381 0.00 0.00 38.69 3.85
180 181 1.939838 GCTAGAAACACCACCAGGACG 60.940 57.143 0.00 0.00 38.69 4.79
181 182 0.682852 TAGAAACACCACCAGGACGG 59.317 55.000 0.00 0.00 42.50 4.79
182 183 1.599797 GAAACACCACCAGGACGGG 60.600 63.158 0.00 0.00 40.22 5.28
183 184 3.128032 AAACACCACCAGGACGGGG 62.128 63.158 0.00 0.00 40.22 5.73
184 185 4.567597 ACACCACCAGGACGGGGA 62.568 66.667 8.75 0.00 43.25 4.81
185 186 4.016706 CACCACCAGGACGGGGAC 62.017 72.222 0.00 0.00 43.25 4.46
197 198 4.816984 GGGGACGAGGCGAGGAGA 62.817 72.222 0.00 0.00 0.00 3.71
198 199 2.754658 GGGACGAGGCGAGGAGAA 60.755 66.667 0.00 0.00 0.00 2.87
199 200 2.490685 GGACGAGGCGAGGAGAAC 59.509 66.667 0.00 0.00 0.00 3.01
200 201 2.490685 GACGAGGCGAGGAGAACC 59.509 66.667 0.00 0.00 0.00 3.62
216 217 6.850234 AGGAGAACCTTATTCTATCCGTAGA 58.150 40.000 0.00 0.00 45.36 2.59
217 218 6.943718 AGGAGAACCTTATTCTATCCGTAGAG 59.056 42.308 0.00 0.00 45.36 2.43
218 219 6.941436 GGAGAACCTTATTCTATCCGTAGAGA 59.059 42.308 0.00 0.00 38.17 3.10
219 220 7.120138 GGAGAACCTTATTCTATCCGTAGAGAG 59.880 44.444 0.00 0.00 38.17 3.20
220 221 6.431852 AGAACCTTATTCTATCCGTAGAGAGC 59.568 42.308 0.00 0.00 38.17 4.09
221 222 5.011586 ACCTTATTCTATCCGTAGAGAGCC 58.988 45.833 0.00 0.00 38.17 4.70
222 223 4.095185 CCTTATTCTATCCGTAGAGAGCCG 59.905 50.000 0.00 0.00 38.17 5.52
223 224 2.634815 TTCTATCCGTAGAGAGCCGT 57.365 50.000 0.00 0.00 38.17 5.68
224 225 2.166821 TCTATCCGTAGAGAGCCGTC 57.833 55.000 0.00 0.00 32.04 4.79
225 226 0.791422 CTATCCGTAGAGAGCCGTCG 59.209 60.000 0.00 0.00 0.00 5.12
226 227 1.226686 TATCCGTAGAGAGCCGTCGC 61.227 60.000 0.00 0.00 0.00 5.19
227 228 4.253257 CCGTAGAGAGCCGTCGCC 62.253 72.222 0.00 0.00 34.57 5.54
228 229 4.592936 CGTAGAGAGCCGTCGCCG 62.593 72.222 0.00 0.00 34.57 6.46
229 230 4.908877 GTAGAGAGCCGTCGCCGC 62.909 72.222 0.00 0.00 34.57 6.53
239 240 4.539881 GTCGCCGCCTCGTCTCTC 62.540 72.222 0.00 0.00 0.00 3.20
240 241 4.779966 TCGCCGCCTCGTCTCTCT 62.780 66.667 0.00 0.00 0.00 3.10
241 242 4.544689 CGCCGCCTCGTCTCTCTG 62.545 72.222 0.00 0.00 0.00 3.35
242 243 3.134792 GCCGCCTCGTCTCTCTGA 61.135 66.667 0.00 0.00 0.00 3.27
243 244 3.106552 CCGCCTCGTCTCTCTGAG 58.893 66.667 0.00 0.00 0.00 3.35
244 245 2.407210 CGCCTCGTCTCTCTGAGC 59.593 66.667 0.00 0.00 0.00 4.26
245 246 2.402572 CGCCTCGTCTCTCTGAGCA 61.403 63.158 0.00 0.00 0.00 4.26
246 247 1.886585 GCCTCGTCTCTCTGAGCAA 59.113 57.895 0.00 0.00 0.00 3.91
247 248 0.179140 GCCTCGTCTCTCTGAGCAAG 60.179 60.000 0.00 0.00 0.00 4.01
248 249 1.458398 CCTCGTCTCTCTGAGCAAGA 58.542 55.000 0.00 0.00 0.00 3.02
249 250 1.132262 CCTCGTCTCTCTGAGCAAGAC 59.868 57.143 13.68 13.68 36.82 3.01
250 251 1.809547 CTCGTCTCTCTGAGCAAGACA 59.190 52.381 20.14 10.57 39.49 3.41
251 252 1.537638 TCGTCTCTCTGAGCAAGACAC 59.462 52.381 20.14 2.71 39.49 3.67
252 253 1.268079 CGTCTCTCTGAGCAAGACACA 59.732 52.381 20.14 0.00 39.49 3.72
253 254 2.287849 CGTCTCTCTGAGCAAGACACAA 60.288 50.000 20.14 0.00 39.49 3.33
254 255 3.722147 GTCTCTCTGAGCAAGACACAAA 58.278 45.455 17.12 0.00 39.36 2.83
255 256 4.314121 GTCTCTCTGAGCAAGACACAAAT 58.686 43.478 17.12 0.00 39.36 2.32
256 257 4.388469 GTCTCTCTGAGCAAGACACAAATC 59.612 45.833 17.12 0.00 39.36 2.17
257 258 3.668447 TCTCTGAGCAAGACACAAATCC 58.332 45.455 0.00 0.00 0.00 3.01
258 259 3.326006 TCTCTGAGCAAGACACAAATCCT 59.674 43.478 0.00 0.00 0.00 3.24
259 260 4.528206 TCTCTGAGCAAGACACAAATCCTA 59.472 41.667 0.00 0.00 0.00 2.94
260 261 5.012046 TCTCTGAGCAAGACACAAATCCTAA 59.988 40.000 0.00 0.00 0.00 2.69
261 262 4.997395 TCTGAGCAAGACACAAATCCTAAC 59.003 41.667 0.00 0.00 0.00 2.34
262 263 4.713553 TGAGCAAGACACAAATCCTAACA 58.286 39.130 0.00 0.00 0.00 2.41
263 264 5.129634 TGAGCAAGACACAAATCCTAACAA 58.870 37.500 0.00 0.00 0.00 2.83
264 265 5.592282 TGAGCAAGACACAAATCCTAACAAA 59.408 36.000 0.00 0.00 0.00 2.83
265 266 6.096141 TGAGCAAGACACAAATCCTAACAAAA 59.904 34.615 0.00 0.00 0.00 2.44
266 267 6.273071 AGCAAGACACAAATCCTAACAAAAC 58.727 36.000 0.00 0.00 0.00 2.43
267 268 6.096846 AGCAAGACACAAATCCTAACAAAACT 59.903 34.615 0.00 0.00 0.00 2.66
268 269 6.417930 GCAAGACACAAATCCTAACAAAACTC 59.582 38.462 0.00 0.00 0.00 3.01
269 270 7.479980 CAAGACACAAATCCTAACAAAACTCA 58.520 34.615 0.00 0.00 0.00 3.41
270 271 7.639113 AGACACAAATCCTAACAAAACTCAA 57.361 32.000 0.00 0.00 0.00 3.02
271 272 8.062065 AGACACAAATCCTAACAAAACTCAAA 57.938 30.769 0.00 0.00 0.00 2.69
272 273 8.527810 AGACACAAATCCTAACAAAACTCAAAA 58.472 29.630 0.00 0.00 0.00 2.44
273 274 8.702163 ACACAAATCCTAACAAAACTCAAAAG 57.298 30.769 0.00 0.00 0.00 2.27
274 275 8.527810 ACACAAATCCTAACAAAACTCAAAAGA 58.472 29.630 0.00 0.00 0.00 2.52
275 276 9.023967 CACAAATCCTAACAAAACTCAAAAGAG 57.976 33.333 0.00 0.00 0.00 2.85
276 277 8.749354 ACAAATCCTAACAAAACTCAAAAGAGT 58.251 29.630 0.00 0.00 36.92 3.24
280 281 9.793259 ATCCTAACAAAACTCAAAAGAGTATGA 57.207 29.630 14.41 0.00 34.56 2.15
281 282 9.621629 TCCTAACAAAACTCAAAAGAGTATGAA 57.378 29.630 14.41 5.41 34.56 2.57
288 289 9.586435 AAAACTCAAAAGAGTATGAAAAACTGG 57.414 29.630 0.00 0.00 34.56 4.00
289 290 8.519799 AACTCAAAAGAGTATGAAAAACTGGA 57.480 30.769 0.00 0.00 34.56 3.86
290 291 8.159344 ACTCAAAAGAGTATGAAAAACTGGAG 57.841 34.615 0.00 0.00 32.97 3.86
291 292 6.970484 TCAAAAGAGTATGAAAAACTGGAGC 58.030 36.000 0.00 0.00 0.00 4.70
292 293 5.966742 AAAGAGTATGAAAAACTGGAGCC 57.033 39.130 0.00 0.00 0.00 4.70
293 294 3.956744 AGAGTATGAAAAACTGGAGCCC 58.043 45.455 0.00 0.00 0.00 5.19
294 295 3.589288 AGAGTATGAAAAACTGGAGCCCT 59.411 43.478 0.00 0.00 0.00 5.19
295 296 3.942115 GAGTATGAAAAACTGGAGCCCTC 59.058 47.826 0.00 0.00 0.00 4.30
318 319 4.564110 GGCAGGGGCGGTATCCAC 62.564 72.222 0.00 0.00 42.47 4.02
319 320 4.564110 GCAGGGGCGGTATCCACC 62.564 72.222 0.00 0.00 41.93 4.61
320 321 3.087253 CAGGGGCGGTATCCACCA 61.087 66.667 0.00 0.00 46.14 4.17
321 322 3.087906 AGGGGCGGTATCCACCAC 61.088 66.667 0.00 0.00 46.14 4.16
322 323 4.540735 GGGGCGGTATCCACCACG 62.541 72.222 0.00 0.00 46.14 4.94
325 326 4.157120 GCGGTATCCACCACGCCT 62.157 66.667 0.00 0.00 46.14 5.52
326 327 2.106332 CGGTATCCACCACGCCTC 59.894 66.667 0.00 0.00 46.14 4.70
327 328 2.504519 GGTATCCACCACGCCTCC 59.495 66.667 0.00 0.00 45.04 4.30
328 329 2.363975 GGTATCCACCACGCCTCCA 61.364 63.158 0.00 0.00 45.04 3.86
329 330 1.696097 GGTATCCACCACGCCTCCAT 61.696 60.000 0.00 0.00 45.04 3.41
330 331 0.532862 GTATCCACCACGCCTCCATG 60.533 60.000 0.00 0.00 0.00 3.66
331 332 1.695114 TATCCACCACGCCTCCATGG 61.695 60.000 4.97 4.97 42.13 3.66
341 342 2.620234 CCTCCATGGCCTAAGACCA 58.380 57.895 6.96 0.00 42.61 4.02
342 343 0.181350 CCTCCATGGCCTAAGACCAC 59.819 60.000 6.96 0.00 40.82 4.16
343 344 0.911769 CTCCATGGCCTAAGACCACA 59.088 55.000 6.96 0.00 40.82 4.17
344 345 0.911769 TCCATGGCCTAAGACCACAG 59.088 55.000 6.96 0.00 40.82 3.66
345 346 0.911769 CCATGGCCTAAGACCACAGA 59.088 55.000 3.32 0.00 40.82 3.41
346 347 1.281867 CCATGGCCTAAGACCACAGAA 59.718 52.381 3.32 0.00 40.82 3.02
347 348 2.636830 CATGGCCTAAGACCACAGAAG 58.363 52.381 3.32 0.00 40.82 2.85
348 349 2.024176 TGGCCTAAGACCACAGAAGA 57.976 50.000 3.32 0.00 30.29 2.87
349 350 1.623811 TGGCCTAAGACCACAGAAGAC 59.376 52.381 3.32 0.00 30.29 3.01
350 351 1.404315 GGCCTAAGACCACAGAAGACG 60.404 57.143 0.00 0.00 0.00 4.18
351 352 1.544691 GCCTAAGACCACAGAAGACGA 59.455 52.381 0.00 0.00 0.00 4.20
352 353 2.416162 GCCTAAGACCACAGAAGACGAG 60.416 54.545 0.00 0.00 0.00 4.18
353 354 2.164624 CCTAAGACCACAGAAGACGAGG 59.835 54.545 0.00 0.00 0.00 4.63
354 355 1.705873 AAGACCACAGAAGACGAGGT 58.294 50.000 0.00 0.00 34.76 3.85
355 356 2.581216 AGACCACAGAAGACGAGGTA 57.419 50.000 0.00 0.00 31.57 3.08
356 357 2.438411 AGACCACAGAAGACGAGGTAG 58.562 52.381 0.00 0.00 31.57 3.18
357 358 2.040012 AGACCACAGAAGACGAGGTAGA 59.960 50.000 0.00 0.00 31.57 2.59
358 359 2.161030 ACCACAGAAGACGAGGTAGAC 58.839 52.381 0.00 0.00 0.00 2.59
359 360 1.473278 CCACAGAAGACGAGGTAGACC 59.527 57.143 0.00 0.00 0.00 3.85
360 361 1.130749 CACAGAAGACGAGGTAGACCG 59.869 57.143 0.00 0.00 42.08 4.79
361 362 0.733729 CAGAAGACGAGGTAGACCGG 59.266 60.000 0.00 0.00 42.08 5.28
362 363 1.031029 AGAAGACGAGGTAGACCGGC 61.031 60.000 0.00 0.00 42.08 6.13
363 364 2.320339 GAAGACGAGGTAGACCGGCG 62.320 65.000 0.00 0.00 42.08 6.46
364 365 3.885521 GACGAGGTAGACCGGCGG 61.886 72.222 27.06 27.06 40.95 6.13
388 389 3.744719 CGACGGGAGGCACGAGAA 61.745 66.667 0.00 0.00 38.29 2.87
389 390 2.654877 GACGGGAGGCACGAGAAA 59.345 61.111 0.00 0.00 38.26 2.52
390 391 1.737008 GACGGGAGGCACGAGAAAC 60.737 63.158 0.00 0.00 38.26 2.78
391 392 2.434359 CGGGAGGCACGAGAAACC 60.434 66.667 0.00 0.00 0.00 3.27
392 393 2.046217 GGGAGGCACGAGAAACCC 60.046 66.667 0.00 0.00 0.00 4.11
393 394 2.593956 GGGAGGCACGAGAAACCCT 61.594 63.158 0.00 0.00 35.03 4.34
394 395 1.262640 GGGAGGCACGAGAAACCCTA 61.263 60.000 0.00 0.00 35.03 3.53
395 396 0.175989 GGAGGCACGAGAAACCCTAG 59.824 60.000 0.00 0.00 0.00 3.02
396 397 0.460459 GAGGCACGAGAAACCCTAGC 60.460 60.000 0.00 0.00 0.00 3.42
397 398 1.449778 GGCACGAGAAACCCTAGCC 60.450 63.158 0.00 0.00 32.64 3.93
398 399 1.295423 GCACGAGAAACCCTAGCCA 59.705 57.895 0.00 0.00 0.00 4.75
399 400 0.321298 GCACGAGAAACCCTAGCCAA 60.321 55.000 0.00 0.00 0.00 4.52
400 401 1.726853 CACGAGAAACCCTAGCCAAG 58.273 55.000 0.00 0.00 0.00 3.61
401 402 0.613777 ACGAGAAACCCTAGCCAAGG 59.386 55.000 0.00 0.00 46.09 3.61
410 411 2.586648 CCTAGCCAAGGGTGTTCTTT 57.413 50.000 0.13 0.00 42.32 2.52
411 412 2.437413 CCTAGCCAAGGGTGTTCTTTC 58.563 52.381 0.13 0.00 42.32 2.62
412 413 2.040412 CCTAGCCAAGGGTGTTCTTTCT 59.960 50.000 0.13 0.00 42.32 2.52
413 414 2.755952 AGCCAAGGGTGTTCTTTCTT 57.244 45.000 0.00 0.00 0.00 2.52
414 415 2.587522 AGCCAAGGGTGTTCTTTCTTC 58.412 47.619 0.00 0.00 0.00 2.87
415 416 1.613925 GCCAAGGGTGTTCTTTCTTCC 59.386 52.381 0.00 0.00 0.00 3.46
416 417 2.753168 GCCAAGGGTGTTCTTTCTTCCT 60.753 50.000 0.00 0.00 0.00 3.36
417 418 2.887152 CCAAGGGTGTTCTTTCTTCCTG 59.113 50.000 0.00 0.00 0.00 3.86
418 419 3.555966 CAAGGGTGTTCTTTCTTCCTGT 58.444 45.455 0.00 0.00 0.00 4.00
419 420 4.445735 CCAAGGGTGTTCTTTCTTCCTGTA 60.446 45.833 0.00 0.00 0.00 2.74
420 421 5.316987 CAAGGGTGTTCTTTCTTCCTGTAT 58.683 41.667 0.00 0.00 0.00 2.29
421 422 4.911390 AGGGTGTTCTTTCTTCCTGTATG 58.089 43.478 0.00 0.00 0.00 2.39
422 423 4.597507 AGGGTGTTCTTTCTTCCTGTATGA 59.402 41.667 0.00 0.00 0.00 2.15
423 424 4.695928 GGGTGTTCTTTCTTCCTGTATGAC 59.304 45.833 0.00 0.00 0.00 3.06
424 425 4.695928 GGTGTTCTTTCTTCCTGTATGACC 59.304 45.833 0.00 0.00 0.00 4.02
425 426 5.513267 GGTGTTCTTTCTTCCTGTATGACCT 60.513 44.000 0.00 0.00 0.00 3.85
426 427 5.639931 GTGTTCTTTCTTCCTGTATGACCTC 59.360 44.000 0.00 0.00 0.00 3.85
427 428 5.544176 TGTTCTTTCTTCCTGTATGACCTCT 59.456 40.000 0.00 0.00 0.00 3.69
428 429 6.043243 TGTTCTTTCTTCCTGTATGACCTCTT 59.957 38.462 0.00 0.00 0.00 2.85
429 430 6.688073 TCTTTCTTCCTGTATGACCTCTTT 57.312 37.500 0.00 0.00 0.00 2.52
430 431 6.702329 TCTTTCTTCCTGTATGACCTCTTTC 58.298 40.000 0.00 0.00 0.00 2.62
431 432 5.422214 TTCTTCCTGTATGACCTCTTTCC 57.578 43.478 0.00 0.00 0.00 3.13
432 433 3.775316 TCTTCCTGTATGACCTCTTTCCC 59.225 47.826 0.00 0.00 0.00 3.97
433 434 2.478292 TCCTGTATGACCTCTTTCCCC 58.522 52.381 0.00 0.00 0.00 4.81
434 435 2.045885 TCCTGTATGACCTCTTTCCCCT 59.954 50.000 0.00 0.00 0.00 4.79
435 436 2.171448 CCTGTATGACCTCTTTCCCCTG 59.829 54.545 0.00 0.00 0.00 4.45
436 437 2.171448 CTGTATGACCTCTTTCCCCTGG 59.829 54.545 0.00 0.00 0.00 4.45
437 438 1.490910 GTATGACCTCTTTCCCCTGGG 59.509 57.143 5.50 5.50 0.00 4.45
438 439 0.121197 ATGACCTCTTTCCCCTGGGA 59.879 55.000 16.20 3.95 43.52 4.37
439 440 0.121197 TGACCTCTTTCCCCTGGGAT 59.879 55.000 16.20 0.00 44.74 3.85
440 441 1.368203 TGACCTCTTTCCCCTGGGATA 59.632 52.381 16.20 0.00 44.74 2.59
441 442 2.021042 TGACCTCTTTCCCCTGGGATAT 60.021 50.000 16.20 0.00 44.74 1.63
442 443 3.211232 TGACCTCTTTCCCCTGGGATATA 59.789 47.826 16.20 0.00 44.74 0.86
443 444 4.140204 TGACCTCTTTCCCCTGGGATATAT 60.140 45.833 16.20 0.00 44.74 0.86
444 445 4.852697 GACCTCTTTCCCCTGGGATATATT 59.147 45.833 16.20 0.00 44.74 1.28
445 446 5.243566 ACCTCTTTCCCCTGGGATATATTT 58.756 41.667 16.20 0.00 44.74 1.40
446 447 5.681479 ACCTCTTTCCCCTGGGATATATTTT 59.319 40.000 16.20 0.00 44.74 1.82
447 448 6.012745 CCTCTTTCCCCTGGGATATATTTTG 58.987 44.000 16.20 0.00 44.74 2.44
448 449 5.964288 TCTTTCCCCTGGGATATATTTTGG 58.036 41.667 16.20 0.00 44.74 3.28
449 450 5.679139 TCTTTCCCCTGGGATATATTTTGGA 59.321 40.000 16.20 0.00 44.74 3.53
450 451 5.333566 TTCCCCTGGGATATATTTTGGAC 57.666 43.478 16.20 0.00 44.74 4.02
451 452 4.587475 TCCCCTGGGATATATTTTGGACT 58.413 43.478 16.20 0.00 39.76 3.85
452 453 4.601857 TCCCCTGGGATATATTTTGGACTC 59.398 45.833 16.20 0.00 39.76 3.36
453 454 4.353788 CCCCTGGGATATATTTTGGACTCA 59.646 45.833 16.20 0.00 37.50 3.41
454 455 5.515534 CCCCTGGGATATATTTTGGACTCAG 60.516 48.000 16.20 0.00 37.50 3.35
455 456 5.073691 CCCTGGGATATATTTTGGACTCAGT 59.926 44.000 7.01 0.00 0.00 3.41
468 469 5.538849 TGGACTCAGTGTGTGTGTTTATA 57.461 39.130 1.86 0.00 32.93 0.98
476 477 6.262049 TCAGTGTGTGTGTTTATAATGCTTGT 59.738 34.615 0.00 0.00 0.00 3.16
479 480 8.792633 AGTGTGTGTGTTTATAATGCTTGTATT 58.207 29.630 0.00 0.00 0.00 1.89
497 498 9.065871 GCTTGTATTTTCTTGATGTGACATTAC 57.934 33.333 0.00 0.00 0.00 1.89
569 573 8.182227 CCTAAATTCGTTTTCCTCTCCAATTAC 58.818 37.037 0.00 0.00 0.00 1.89
574 578 4.093556 CGTTTTCCTCTCCAATTACTGCTC 59.906 45.833 0.00 0.00 0.00 4.26
576 580 4.478206 TTCCTCTCCAATTACTGCTCTG 57.522 45.455 0.00 0.00 0.00 3.35
578 582 3.449018 TCCTCTCCAATTACTGCTCTGTC 59.551 47.826 0.00 0.00 0.00 3.51
579 583 3.431486 CCTCTCCAATTACTGCTCTGTCC 60.431 52.174 0.00 0.00 0.00 4.02
580 584 2.501723 TCTCCAATTACTGCTCTGTCCC 59.498 50.000 0.00 0.00 0.00 4.46
581 585 2.503356 CTCCAATTACTGCTCTGTCCCT 59.497 50.000 0.00 0.00 0.00 4.20
582 586 3.706594 CTCCAATTACTGCTCTGTCCCTA 59.293 47.826 0.00 0.00 0.00 3.53
583 587 4.101114 TCCAATTACTGCTCTGTCCCTAA 58.899 43.478 0.00 0.00 0.00 2.69
584 588 4.534500 TCCAATTACTGCTCTGTCCCTAAA 59.466 41.667 0.00 0.00 0.00 1.85
585 589 5.191722 TCCAATTACTGCTCTGTCCCTAAAT 59.808 40.000 0.00 0.00 0.00 1.40
586 590 6.385759 TCCAATTACTGCTCTGTCCCTAAATA 59.614 38.462 0.00 0.00 0.00 1.40
587 591 7.072454 TCCAATTACTGCTCTGTCCCTAAATAT 59.928 37.037 0.00 0.00 0.00 1.28
588 592 8.375506 CCAATTACTGCTCTGTCCCTAAATATA 58.624 37.037 0.00 0.00 0.00 0.86
589 593 9.778741 CAATTACTGCTCTGTCCCTAAATATAA 57.221 33.333 0.00 0.00 0.00 0.98
591 595 8.777578 TTACTGCTCTGTCCCTAAATATAAGA 57.222 34.615 0.00 0.00 0.00 2.10
592 596 7.056844 ACTGCTCTGTCCCTAAATATAAGAC 57.943 40.000 0.00 0.00 0.00 3.01
593 597 6.042208 ACTGCTCTGTCCCTAAATATAAGACC 59.958 42.308 0.00 0.00 0.00 3.85
594 598 5.903010 TGCTCTGTCCCTAAATATAAGACCA 59.097 40.000 0.00 0.00 0.00 4.02
595 599 6.558775 TGCTCTGTCCCTAAATATAAGACCAT 59.441 38.462 0.00 0.00 0.00 3.55
596 600 7.072454 TGCTCTGTCCCTAAATATAAGACCATT 59.928 37.037 0.00 0.00 0.00 3.16
597 601 7.939588 GCTCTGTCCCTAAATATAAGACCATTT 59.060 37.037 0.00 0.00 0.00 2.32
598 602 9.495572 CTCTGTCCCTAAATATAAGACCATTTC 57.504 37.037 0.00 0.00 0.00 2.17
599 603 8.437575 TCTGTCCCTAAATATAAGACCATTTCC 58.562 37.037 0.00 0.00 0.00 3.13
600 604 8.108378 TGTCCCTAAATATAAGACCATTTCCA 57.892 34.615 0.00 0.00 0.00 3.53
601 605 8.217799 TGTCCCTAAATATAAGACCATTTCCAG 58.782 37.037 0.00 0.00 0.00 3.86
602 606 8.218488 GTCCCTAAATATAAGACCATTTCCAGT 58.782 37.037 0.00 0.00 0.00 4.00
603 607 8.787818 TCCCTAAATATAAGACCATTTCCAGTT 58.212 33.333 0.00 0.00 0.00 3.16
604 608 9.421399 CCCTAAATATAAGACCATTTCCAGTTT 57.579 33.333 0.00 0.00 0.00 2.66
610 614 5.376854 AAGACCATTTCCAGTTTGAATCG 57.623 39.130 0.00 0.00 0.00 3.34
611 615 4.651778 AGACCATTTCCAGTTTGAATCGA 58.348 39.130 0.00 0.00 0.00 3.59
612 616 5.070001 AGACCATTTCCAGTTTGAATCGAA 58.930 37.500 0.00 0.00 0.00 3.71
613 617 5.711976 AGACCATTTCCAGTTTGAATCGAAT 59.288 36.000 0.00 0.00 0.00 3.34
614 618 6.209391 AGACCATTTCCAGTTTGAATCGAATT 59.791 34.615 0.00 0.00 0.00 2.17
615 619 6.158598 ACCATTTCCAGTTTGAATCGAATTG 58.841 36.000 0.00 0.00 0.00 2.32
616 620 6.158598 CCATTTCCAGTTTGAATCGAATTGT 58.841 36.000 5.24 0.00 0.00 2.71
617 621 7.040062 ACCATTTCCAGTTTGAATCGAATTGTA 60.040 33.333 5.24 0.00 0.00 2.41
618 622 7.812191 CCATTTCCAGTTTGAATCGAATTGTAA 59.188 33.333 5.24 0.74 0.00 2.41
619 623 9.190858 CATTTCCAGTTTGAATCGAATTGTAAA 57.809 29.630 5.24 2.79 0.00 2.01
620 624 9.757227 ATTTCCAGTTTGAATCGAATTGTAAAA 57.243 25.926 5.24 5.80 0.00 1.52
621 625 9.587772 TTTCCAGTTTGAATCGAATTGTAAAAA 57.412 25.926 5.24 1.43 0.00 1.94
622 626 8.795786 TCCAGTTTGAATCGAATTGTAAAAAG 57.204 30.769 5.24 0.00 0.00 2.27
623 627 8.410141 TCCAGTTTGAATCGAATTGTAAAAAGT 58.590 29.630 5.24 0.00 0.00 2.66
624 628 8.690840 CCAGTTTGAATCGAATTGTAAAAAGTC 58.309 33.333 5.24 0.00 0.00 3.01
625 629 9.450807 CAGTTTGAATCGAATTGTAAAAAGTCT 57.549 29.630 0.00 0.00 0.00 3.24
640 644 9.603921 TGTAAAAAGTCTTATATTTAGGGACGG 57.396 33.333 0.00 0.00 32.86 4.79
641 645 9.822185 GTAAAAAGTCTTATATTTAGGGACGGA 57.178 33.333 0.00 0.00 32.86 4.69
642 646 8.959705 AAAAAGTCTTATATTTAGGGACGGAG 57.040 34.615 0.00 0.00 32.86 4.63
643 647 6.667558 AAGTCTTATATTTAGGGACGGAGG 57.332 41.667 0.00 0.00 32.86 4.30
644 648 5.085219 AGTCTTATATTTAGGGACGGAGGG 58.915 45.833 0.00 0.00 32.86 4.30
645 649 5.082425 GTCTTATATTTAGGGACGGAGGGA 58.918 45.833 0.00 0.00 0.00 4.20
646 650 5.185442 GTCTTATATTTAGGGACGGAGGGAG 59.815 48.000 0.00 0.00 0.00 4.30
647 651 3.632420 ATATTTAGGGACGGAGGGAGT 57.368 47.619 0.00 0.00 0.00 3.85
648 652 4.754411 ATATTTAGGGACGGAGGGAGTA 57.246 45.455 0.00 0.00 0.00 2.59
649 653 2.149973 TTTAGGGACGGAGGGAGTAC 57.850 55.000 0.00 0.00 0.00 2.73
650 654 1.302907 TTAGGGACGGAGGGAGTACT 58.697 55.000 0.00 0.00 0.00 2.73
651 655 2.196742 TAGGGACGGAGGGAGTACTA 57.803 55.000 0.00 0.00 0.00 1.82
652 656 1.532038 AGGGACGGAGGGAGTACTAT 58.468 55.000 0.00 0.00 0.00 2.12
653 657 1.424684 AGGGACGGAGGGAGTACTATC 59.575 57.143 0.00 0.00 0.00 2.08
654 658 1.424684 GGGACGGAGGGAGTACTATCT 59.575 57.143 0.00 0.00 0.00 1.98
655 659 2.506444 GGACGGAGGGAGTACTATCTG 58.494 57.143 0.00 2.44 0.00 2.90
656 660 2.158638 GGACGGAGGGAGTACTATCTGT 60.159 54.545 13.72 13.72 34.02 3.41
657 661 3.140623 GACGGAGGGAGTACTATCTGTC 58.859 54.545 20.12 20.12 39.96 3.51
658 662 2.158638 ACGGAGGGAGTACTATCTGTCC 60.159 54.545 9.74 5.42 0.00 4.02
659 663 2.158652 CGGAGGGAGTACTATCTGTCCA 60.159 54.545 0.00 0.00 0.00 4.02
660 664 3.687551 CGGAGGGAGTACTATCTGTCCAA 60.688 52.174 0.00 0.00 0.00 3.53
677 681 8.698973 TCTGTCCAAATCCAAACAATAAACTA 57.301 30.769 0.00 0.00 0.00 2.24
678 682 9.308000 TCTGTCCAAATCCAAACAATAAACTAT 57.692 29.630 0.00 0.00 0.00 2.12
705 709 7.814264 ATACTGATGCCATCCTTTTTCTTAG 57.186 36.000 1.49 0.00 0.00 2.18
706 710 4.400567 ACTGATGCCATCCTTTTTCTTAGC 59.599 41.667 1.49 0.00 0.00 3.09
707 711 4.343231 TGATGCCATCCTTTTTCTTAGCA 58.657 39.130 1.49 0.00 0.00 3.49
708 712 4.400251 TGATGCCATCCTTTTTCTTAGCAG 59.600 41.667 1.49 0.00 31.70 4.24
709 713 4.032960 TGCCATCCTTTTTCTTAGCAGA 57.967 40.909 0.00 0.00 0.00 4.26
710 714 4.406456 TGCCATCCTTTTTCTTAGCAGAA 58.594 39.130 0.00 0.00 37.24 3.02
711 715 4.218417 TGCCATCCTTTTTCTTAGCAGAAC 59.782 41.667 0.00 0.00 38.86 3.01
712 716 4.218417 GCCATCCTTTTTCTTAGCAGAACA 59.782 41.667 0.00 0.00 38.86 3.18
713 717 5.105595 GCCATCCTTTTTCTTAGCAGAACAT 60.106 40.000 0.00 0.00 38.86 2.71
725 729 2.026915 AGCAGAACATGTACTGATGCCA 60.027 45.455 0.00 0.00 36.38 4.92
728 732 3.562973 CAGAACATGTACTGATGCCATCC 59.437 47.826 0.00 0.00 36.38 3.51
729 733 2.645838 ACATGTACTGATGCCATCCC 57.354 50.000 0.00 0.00 0.00 3.85
730 734 1.845791 ACATGTACTGATGCCATCCCA 59.154 47.619 0.00 0.00 0.00 4.37
731 735 2.444388 ACATGTACTGATGCCATCCCAT 59.556 45.455 0.00 0.00 0.00 4.00
744 748 2.634940 CCATCCCATCTCCGTTCACTAT 59.365 50.000 0.00 0.00 0.00 2.12
745 749 3.306364 CCATCCCATCTCCGTTCACTATC 60.306 52.174 0.00 0.00 0.00 2.08
746 750 3.026707 TCCCATCTCCGTTCACTATCA 57.973 47.619 0.00 0.00 0.00 2.15
802 842 1.423395 CAACTCTTGACCAGCGAGTC 58.577 55.000 2.53 2.53 37.04 3.36
836 876 2.266055 CGGAAAGAAGCTCGGCCT 59.734 61.111 0.00 0.00 0.00 5.19
839 879 1.079750 GAAAGAAGCTCGGCCTCGT 60.080 57.895 0.00 0.00 37.69 4.18
899 946 4.569023 CCTCGCTATCGCCGCACA 62.569 66.667 0.00 0.00 35.26 4.57
900 947 3.323136 CTCGCTATCGCCGCACAC 61.323 66.667 0.00 0.00 35.26 3.82
902 949 3.913573 CGCTATCGCCGCACACAC 61.914 66.667 0.00 0.00 0.00 3.82
903 950 3.564027 GCTATCGCCGCACACACC 61.564 66.667 0.00 0.00 0.00 4.16
905 952 4.805231 TATCGCCGCACACACCCG 62.805 66.667 0.00 0.00 0.00 5.28
909 956 2.744709 GCCGCACACACCCGTAAT 60.745 61.111 0.00 0.00 0.00 1.89
911 958 1.374885 CCGCACACACCCGTAATCA 60.375 57.895 0.00 0.00 0.00 2.57
918 966 2.832129 ACACACCCGTAATCATCTCTGT 59.168 45.455 0.00 0.00 0.00 3.41
926 2547 3.639094 CGTAATCATCTCTGTCCCTTCCT 59.361 47.826 0.00 0.00 0.00 3.36
1135 2759 0.849540 CCCCACCTCCTAAACCCCTT 60.850 60.000 0.00 0.00 0.00 3.95
1136 2760 1.081481 CCCACCTCCTAAACCCCTTT 58.919 55.000 0.00 0.00 0.00 3.11
1144 2768 1.006758 CCTAAACCCCTTTCTTCCCCC 59.993 57.143 0.00 0.00 0.00 5.40
1193 2823 2.219325 CTCCCGGCTCAGACTGTGTC 62.219 65.000 0.00 0.14 0.00 3.67
1205 2835 2.986979 TGTGTCGCTGACCCGCTA 60.987 61.111 6.30 0.00 0.00 4.26
1206 2836 2.260434 GTGTCGCTGACCCGCTAA 59.740 61.111 6.30 0.00 0.00 3.09
1209 2839 3.766691 TCGCTGACCCGCTAACCC 61.767 66.667 0.00 0.00 0.00 4.11
1217 2847 2.033448 CCGCTAACCCTTGTGGCA 59.967 61.111 0.00 0.00 37.83 4.92
1465 3095 3.580319 GCACCCCACCCCAGAACT 61.580 66.667 0.00 0.00 0.00 3.01
1468 3098 1.847968 ACCCCACCCCAGAACTCTG 60.848 63.158 0.00 0.00 43.40 3.35
1509 3691 5.871834 TCTTTCTTTCCATCGGGAGTAAAA 58.128 37.500 0.00 0.00 46.01 1.52
1512 3694 4.777463 TCTTTCCATCGGGAGTAAAATCC 58.223 43.478 0.00 0.00 46.01 3.01
1538 3720 5.821204 ACTGTAGTTGACAACAAGAAATGC 58.179 37.500 20.08 2.99 37.70 3.56
1550 3732 3.862845 ACAAGAAATGCACCGTGTTTTTC 59.137 39.130 15.13 15.13 0.00 2.29
1555 3745 1.178276 TGCACCGTGTTTTTCTGGTT 58.822 45.000 0.00 0.00 30.72 3.67
1567 3757 2.772568 TTCTGGTTTTGTGATGTGCG 57.227 45.000 0.00 0.00 0.00 5.34
1614 3804 1.228154 GGGCTTCAACGGAACCACT 60.228 57.895 0.00 0.00 0.00 4.00
1626 3816 4.969484 ACGGAACCACTTTCTAAGACAAT 58.031 39.130 0.00 0.00 34.26 2.71
1668 3858 2.029649 GGCGACAGTAGTGAACCAGTAA 60.030 50.000 4.09 0.00 0.00 2.24
1671 3861 4.227538 CGACAGTAGTGAACCAGTAACAG 58.772 47.826 4.09 0.00 0.00 3.16
1756 3957 7.815068 AGTACTAGCACTGTGATTTTAAGTCAG 59.185 37.037 12.86 0.00 0.00 3.51
1804 4005 6.741992 TGCTTATTTGTTCAGTCACATAGG 57.258 37.500 0.00 0.00 0.00 2.57
1828 4029 6.538381 GGAACACAAAGTGAAAACAATCCAAT 59.462 34.615 3.88 0.00 36.96 3.16
1873 5355 5.415221 AGTTCAGAATTCTTCGGATGAGTC 58.585 41.667 4.86 0.00 33.96 3.36
1924 5406 0.462581 ACCACCATAGCATCAGCACG 60.463 55.000 0.00 0.00 45.49 5.34
1985 5512 9.076596 GCAGAGTTTATACATTTTAAGCCAAAG 57.923 33.333 0.00 0.00 0.00 2.77
2238 5770 5.991933 AGTCCATATACATAGAGCAGTGG 57.008 43.478 0.00 0.00 0.00 4.00
2317 5850 8.103305 ACAAGCTTCTTCATAACCAGATTCTTA 58.897 33.333 0.00 0.00 0.00 2.10
2449 5984 2.167219 ACTCGACGGCATTGCGATG 61.167 57.895 9.80 9.80 36.32 3.84
2454 5989 0.378257 GACGGCATTGCGATGATTGT 59.622 50.000 18.58 11.46 35.16 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.116328 CTCTTCGTCGGCGGCAGA 62.116 66.667 13.62 10.89 38.89 4.26
1 2 3.626680 TTCTCTTCGTCGGCGGCAG 62.627 63.158 13.62 6.37 38.89 4.85
2 3 3.626680 CTTCTCTTCGTCGGCGGCA 62.627 63.158 13.62 0.00 38.89 5.69
3 4 2.881352 CTTCTCTTCGTCGGCGGC 60.881 66.667 10.62 3.25 38.89 6.53
4 5 2.881352 GCTTCTCTTCGTCGGCGG 60.881 66.667 10.62 0.00 38.89 6.13
5 6 2.573341 TACGCTTCTCTTCGTCGGCG 62.573 60.000 1.15 1.15 46.47 6.46
6 7 0.862283 CTACGCTTCTCTTCGTCGGC 60.862 60.000 0.00 0.00 39.79 5.54
7 8 0.725686 TCTACGCTTCTCTTCGTCGG 59.274 55.000 0.00 0.00 39.79 4.79
8 9 2.030579 TGATCTACGCTTCTCTTCGTCG 59.969 50.000 0.00 0.00 39.79 5.12
9 10 3.310227 TCTGATCTACGCTTCTCTTCGTC 59.690 47.826 0.00 0.00 39.79 4.20
10 11 3.271729 TCTGATCTACGCTTCTCTTCGT 58.728 45.455 0.00 0.00 42.09 3.85
11 12 3.953874 TCTGATCTACGCTTCTCTTCG 57.046 47.619 0.00 0.00 0.00 3.79
12 13 4.097286 ACCTTCTGATCTACGCTTCTCTTC 59.903 45.833 0.00 0.00 0.00 2.87
13 14 4.020543 ACCTTCTGATCTACGCTTCTCTT 58.979 43.478 0.00 0.00 0.00 2.85
15 16 4.356289 GAACCTTCTGATCTACGCTTCTC 58.644 47.826 0.00 0.00 0.00 2.87
16 17 3.131400 GGAACCTTCTGATCTACGCTTCT 59.869 47.826 0.00 0.00 0.00 2.85
17 18 3.119101 TGGAACCTTCTGATCTACGCTTC 60.119 47.826 0.00 0.00 0.00 3.86
18 19 2.832129 TGGAACCTTCTGATCTACGCTT 59.168 45.455 0.00 0.00 0.00 4.68
19 20 2.457598 TGGAACCTTCTGATCTACGCT 58.542 47.619 0.00 0.00 0.00 5.07
20 21 2.930682 GTTGGAACCTTCTGATCTACGC 59.069 50.000 0.00 0.00 0.00 4.42
21 22 3.522553 GGTTGGAACCTTCTGATCTACG 58.477 50.000 0.98 0.00 45.75 3.51
34 35 2.132762 CGTGTGTCTACAGGTTGGAAC 58.867 52.381 0.00 0.00 37.52 3.62
35 36 2.033372 TCGTGTGTCTACAGGTTGGAA 58.967 47.619 0.00 0.00 41.97 3.53
36 37 1.694844 TCGTGTGTCTACAGGTTGGA 58.305 50.000 0.00 0.00 41.97 3.53
37 38 2.132762 GTTCGTGTGTCTACAGGTTGG 58.867 52.381 0.00 0.00 41.97 3.77
38 39 2.538449 GTGTTCGTGTGTCTACAGGTTG 59.462 50.000 0.00 0.00 41.97 3.77
39 40 2.166870 TGTGTTCGTGTGTCTACAGGTT 59.833 45.455 0.00 0.00 41.97 3.50
40 41 1.752498 TGTGTTCGTGTGTCTACAGGT 59.248 47.619 0.00 0.00 41.97 4.00
41 42 2.034179 TCTGTGTTCGTGTGTCTACAGG 59.966 50.000 0.00 0.00 42.50 4.00
42 43 3.043586 GTCTGTGTTCGTGTGTCTACAG 58.956 50.000 0.00 0.00 37.52 2.74
43 44 2.540157 CGTCTGTGTTCGTGTGTCTACA 60.540 50.000 0.00 0.00 0.00 2.74
44 45 2.041966 CGTCTGTGTTCGTGTGTCTAC 58.958 52.381 0.00 0.00 0.00 2.59
45 46 1.941975 TCGTCTGTGTTCGTGTGTCTA 59.058 47.619 0.00 0.00 0.00 2.59
46 47 0.736636 TCGTCTGTGTTCGTGTGTCT 59.263 50.000 0.00 0.00 0.00 3.41
47 48 1.254570 GTTCGTCTGTGTTCGTGTGTC 59.745 52.381 0.00 0.00 0.00 3.67
48 49 1.274596 GTTCGTCTGTGTTCGTGTGT 58.725 50.000 0.00 0.00 0.00 3.72
49 50 0.226235 CGTTCGTCTGTGTTCGTGTG 59.774 55.000 0.00 0.00 0.00 3.82
50 51 0.099259 TCGTTCGTCTGTGTTCGTGT 59.901 50.000 0.00 0.00 0.00 4.49
51 52 1.187271 CTTCGTTCGTCTGTGTTCGTG 59.813 52.381 0.00 0.00 0.00 4.35
52 53 1.064505 TCTTCGTTCGTCTGTGTTCGT 59.935 47.619 0.00 0.00 0.00 3.85
53 54 1.447201 GTCTTCGTTCGTCTGTGTTCG 59.553 52.381 0.00 0.00 0.00 3.95
54 55 2.456989 TGTCTTCGTTCGTCTGTGTTC 58.543 47.619 0.00 0.00 0.00 3.18
55 56 2.572191 TGTCTTCGTTCGTCTGTGTT 57.428 45.000 0.00 0.00 0.00 3.32
56 57 2.098607 TCTTGTCTTCGTTCGTCTGTGT 59.901 45.455 0.00 0.00 0.00 3.72
57 58 2.727777 TCTTGTCTTCGTTCGTCTGTG 58.272 47.619 0.00 0.00 0.00 3.66
58 59 3.566523 GATCTTGTCTTCGTTCGTCTGT 58.433 45.455 0.00 0.00 0.00 3.41
59 60 2.917971 GGATCTTGTCTTCGTTCGTCTG 59.082 50.000 0.00 0.00 0.00 3.51
60 61 2.557056 TGGATCTTGTCTTCGTTCGTCT 59.443 45.455 0.00 0.00 0.00 4.18
61 62 2.662156 GTGGATCTTGTCTTCGTTCGTC 59.338 50.000 0.00 0.00 0.00 4.20
62 63 2.035449 TGTGGATCTTGTCTTCGTTCGT 59.965 45.455 0.00 0.00 0.00 3.85
63 64 2.672714 TGTGGATCTTGTCTTCGTTCG 58.327 47.619 0.00 0.00 0.00 3.95
64 65 4.690748 TCAATGTGGATCTTGTCTTCGTTC 59.309 41.667 0.00 0.00 0.00 3.95
65 66 4.641396 TCAATGTGGATCTTGTCTTCGTT 58.359 39.130 0.00 0.00 0.00 3.85
66 67 4.271696 TCAATGTGGATCTTGTCTTCGT 57.728 40.909 0.00 0.00 0.00 3.85
67 68 4.272018 GGATCAATGTGGATCTTGTCTTCG 59.728 45.833 0.00 0.00 42.63 3.79
68 69 5.065731 GTGGATCAATGTGGATCTTGTCTTC 59.934 44.000 0.00 0.00 42.63 2.87
69 70 4.946157 GTGGATCAATGTGGATCTTGTCTT 59.054 41.667 0.00 0.00 42.63 3.01
70 71 4.521146 GTGGATCAATGTGGATCTTGTCT 58.479 43.478 0.00 0.00 42.63 3.41
71 72 3.629398 GGTGGATCAATGTGGATCTTGTC 59.371 47.826 0.00 0.00 42.63 3.18
72 73 3.624777 GGTGGATCAATGTGGATCTTGT 58.375 45.455 0.00 0.00 42.63 3.16
73 74 2.615447 CGGTGGATCAATGTGGATCTTG 59.385 50.000 0.00 0.00 42.63 3.02
74 75 2.505407 TCGGTGGATCAATGTGGATCTT 59.495 45.455 0.00 0.00 42.63 2.40
75 76 2.103771 CTCGGTGGATCAATGTGGATCT 59.896 50.000 0.00 0.00 42.63 2.75
76 77 2.103094 TCTCGGTGGATCAATGTGGATC 59.897 50.000 0.00 0.00 42.36 3.36
77 78 2.118679 TCTCGGTGGATCAATGTGGAT 58.881 47.619 0.00 0.00 0.00 3.41
78 79 1.207089 GTCTCGGTGGATCAATGTGGA 59.793 52.381 0.00 0.00 0.00 4.02
79 80 1.066215 TGTCTCGGTGGATCAATGTGG 60.066 52.381 0.00 0.00 0.00 4.17
80 81 2.385013 TGTCTCGGTGGATCAATGTG 57.615 50.000 0.00 0.00 0.00 3.21
81 82 3.074412 GTTTGTCTCGGTGGATCAATGT 58.926 45.455 0.00 0.00 0.00 2.71
82 83 3.073678 TGTTTGTCTCGGTGGATCAATG 58.926 45.455 0.00 0.00 0.00 2.82
83 84 3.074412 GTGTTTGTCTCGGTGGATCAAT 58.926 45.455 0.00 0.00 0.00 2.57
84 85 2.489971 GTGTTTGTCTCGGTGGATCAA 58.510 47.619 0.00 0.00 0.00 2.57
85 86 1.270625 GGTGTTTGTCTCGGTGGATCA 60.271 52.381 0.00 0.00 0.00 2.92
86 87 1.439679 GGTGTTTGTCTCGGTGGATC 58.560 55.000 0.00 0.00 0.00 3.36
87 88 0.320421 CGGTGTTTGTCTCGGTGGAT 60.320 55.000 0.00 0.00 0.00 3.41
88 89 1.068417 CGGTGTTTGTCTCGGTGGA 59.932 57.895 0.00 0.00 0.00 4.02
89 90 1.068417 TCGGTGTTTGTCTCGGTGG 59.932 57.895 0.00 0.00 0.00 4.61
90 91 0.528901 TGTCGGTGTTTGTCTCGGTG 60.529 55.000 0.00 0.00 0.00 4.94
91 92 0.249322 CTGTCGGTGTTTGTCTCGGT 60.249 55.000 0.00 0.00 0.00 4.69
92 93 0.031585 TCTGTCGGTGTTTGTCTCGG 59.968 55.000 0.00 0.00 0.00 4.63
93 94 1.847818 TTCTGTCGGTGTTTGTCTCG 58.152 50.000 0.00 0.00 0.00 4.04
94 95 3.654414 AGATTCTGTCGGTGTTTGTCTC 58.346 45.455 0.00 0.00 0.00 3.36
95 96 3.654414 GAGATTCTGTCGGTGTTTGTCT 58.346 45.455 0.00 0.00 0.00 3.41
96 97 2.408704 CGAGATTCTGTCGGTGTTTGTC 59.591 50.000 0.00 0.00 33.66 3.18
97 98 2.404215 CGAGATTCTGTCGGTGTTTGT 58.596 47.619 0.00 0.00 33.66 2.83
98 99 1.126846 GCGAGATTCTGTCGGTGTTTG 59.873 52.381 0.00 0.00 37.91 2.93
99 100 1.429463 GCGAGATTCTGTCGGTGTTT 58.571 50.000 0.00 0.00 37.91 2.83
100 101 0.732880 CGCGAGATTCTGTCGGTGTT 60.733 55.000 0.00 0.00 37.91 3.32
101 102 1.154016 CGCGAGATTCTGTCGGTGT 60.154 57.895 0.00 0.00 37.91 4.16
102 103 0.863538 CTCGCGAGATTCTGTCGGTG 60.864 60.000 32.06 0.00 40.84 4.94
103 104 1.025113 TCTCGCGAGATTCTGTCGGT 61.025 55.000 33.84 0.00 40.84 4.69
104 105 0.309302 ATCTCGCGAGATTCTGTCGG 59.691 55.000 38.97 11.85 45.31 4.79
105 106 3.835686 ATCTCGCGAGATTCTGTCG 57.164 52.632 38.97 12.61 45.31 4.35
118 119 0.173481 TTTGTCTCTGGCGGATCTCG 59.827 55.000 0.00 0.00 42.76 4.04
119 120 1.646189 GTTTGTCTCTGGCGGATCTC 58.354 55.000 0.00 0.00 0.00 2.75
120 121 0.250513 GGTTTGTCTCTGGCGGATCT 59.749 55.000 0.00 0.00 0.00 2.75
121 122 0.250513 AGGTTTGTCTCTGGCGGATC 59.749 55.000 0.00 0.00 0.00 3.36
122 123 0.250513 GAGGTTTGTCTCTGGCGGAT 59.749 55.000 0.00 0.00 0.00 4.18
123 124 1.671742 GAGGTTTGTCTCTGGCGGA 59.328 57.895 0.00 0.00 0.00 5.54
124 125 1.376037 GGAGGTTTGTCTCTGGCGG 60.376 63.158 0.00 0.00 34.39 6.13
125 126 0.951040 GTGGAGGTTTGTCTCTGGCG 60.951 60.000 0.00 0.00 34.39 5.69
126 127 0.108585 TGTGGAGGTTTGTCTCTGGC 59.891 55.000 0.00 0.00 34.39 4.85
127 128 1.873903 CGTGTGGAGGTTTGTCTCTGG 60.874 57.143 0.00 0.00 34.39 3.86
128 129 1.502231 CGTGTGGAGGTTTGTCTCTG 58.498 55.000 0.00 0.00 34.39 3.35
129 130 0.249911 GCGTGTGGAGGTTTGTCTCT 60.250 55.000 0.00 0.00 34.39 3.10
130 131 1.228657 GGCGTGTGGAGGTTTGTCTC 61.229 60.000 0.00 0.00 0.00 3.36
131 132 1.227853 GGCGTGTGGAGGTTTGTCT 60.228 57.895 0.00 0.00 0.00 3.41
132 133 2.258726 GGGCGTGTGGAGGTTTGTC 61.259 63.158 0.00 0.00 0.00 3.18
133 134 2.203294 GGGCGTGTGGAGGTTTGT 60.203 61.111 0.00 0.00 0.00 2.83
134 135 2.113139 AGGGCGTGTGGAGGTTTG 59.887 61.111 0.00 0.00 0.00 2.93
135 136 2.113139 CAGGGCGTGTGGAGGTTT 59.887 61.111 0.00 0.00 0.00 3.27
136 137 4.643387 GCAGGGCGTGTGGAGGTT 62.643 66.667 9.16 0.00 0.00 3.50
147 148 2.629050 TTCTAGCATCGTCGCAGGGC 62.629 60.000 1.90 0.00 0.00 5.19
148 149 0.179111 TTTCTAGCATCGTCGCAGGG 60.179 55.000 1.90 0.00 0.00 4.45
149 150 0.924090 GTTTCTAGCATCGTCGCAGG 59.076 55.000 1.90 0.00 0.00 4.85
150 151 1.321743 GTGTTTCTAGCATCGTCGCAG 59.678 52.381 1.90 0.00 0.00 5.18
151 152 1.346365 GTGTTTCTAGCATCGTCGCA 58.654 50.000 1.90 0.00 0.00 5.10
152 153 0.645868 GGTGTTTCTAGCATCGTCGC 59.354 55.000 0.00 0.00 0.00 5.19
153 154 1.654105 GTGGTGTTTCTAGCATCGTCG 59.346 52.381 0.00 0.00 0.00 5.12
154 155 2.000447 GGTGGTGTTTCTAGCATCGTC 59.000 52.381 0.00 0.00 0.00 4.20
155 156 1.346395 TGGTGGTGTTTCTAGCATCGT 59.654 47.619 0.00 0.00 32.01 3.73
156 157 2.002586 CTGGTGGTGTTTCTAGCATCG 58.997 52.381 0.00 0.00 34.76 3.84
157 158 2.027192 TCCTGGTGGTGTTTCTAGCATC 60.027 50.000 0.00 0.00 34.76 3.91
158 159 1.985159 TCCTGGTGGTGTTTCTAGCAT 59.015 47.619 0.00 0.00 34.76 3.79
159 160 1.071699 GTCCTGGTGGTGTTTCTAGCA 59.928 52.381 0.00 0.00 34.16 3.49
160 161 1.809684 GTCCTGGTGGTGTTTCTAGC 58.190 55.000 0.00 0.00 34.23 3.42
161 162 1.337823 CCGTCCTGGTGGTGTTTCTAG 60.338 57.143 0.00 0.00 34.23 2.43
162 163 0.682852 CCGTCCTGGTGGTGTTTCTA 59.317 55.000 0.00 0.00 34.23 2.10
163 164 1.450211 CCGTCCTGGTGGTGTTTCT 59.550 57.895 0.00 0.00 34.23 2.52
164 165 1.599797 CCCGTCCTGGTGGTGTTTC 60.600 63.158 6.91 0.00 35.15 2.78
165 166 2.513895 CCCGTCCTGGTGGTGTTT 59.486 61.111 6.91 0.00 35.15 2.83
166 167 3.566210 CCCCGTCCTGGTGGTGTT 61.566 66.667 6.91 0.00 35.15 3.32
167 168 4.567597 TCCCCGTCCTGGTGGTGT 62.568 66.667 6.91 0.00 35.15 4.16
168 169 4.016706 GTCCCCGTCCTGGTGGTG 62.017 72.222 6.91 0.00 35.15 4.17
171 172 3.760035 CTCGTCCCCGTCCTGGTG 61.760 72.222 0.00 0.00 35.15 4.17
180 181 4.816984 TCTCCTCGCCTCGTCCCC 62.817 72.222 0.00 0.00 0.00 4.81
181 182 2.754658 TTCTCCTCGCCTCGTCCC 60.755 66.667 0.00 0.00 0.00 4.46
182 183 2.490685 GTTCTCCTCGCCTCGTCC 59.509 66.667 0.00 0.00 0.00 4.79
183 184 1.596895 AAGGTTCTCCTCGCCTCGTC 61.597 60.000 0.00 0.00 44.35 4.20
184 185 0.323178 TAAGGTTCTCCTCGCCTCGT 60.323 55.000 0.00 0.00 44.35 4.18
185 186 1.033574 ATAAGGTTCTCCTCGCCTCG 58.966 55.000 0.00 0.00 44.35 4.63
186 187 2.696187 AGAATAAGGTTCTCCTCGCCTC 59.304 50.000 0.00 0.00 44.35 4.70
187 188 2.753247 AGAATAAGGTTCTCCTCGCCT 58.247 47.619 0.00 0.00 44.35 5.52
188 189 4.322123 GGATAGAATAAGGTTCTCCTCGCC 60.322 50.000 0.00 0.00 44.35 5.54
189 190 4.616373 CGGATAGAATAAGGTTCTCCTCGC 60.616 50.000 0.00 0.00 44.35 5.03
190 191 4.519730 ACGGATAGAATAAGGTTCTCCTCG 59.480 45.833 0.00 0.71 44.35 4.63
191 192 6.941436 TCTACGGATAGAATAAGGTTCTCCTC 59.059 42.308 0.00 0.00 37.51 3.71
192 193 6.850234 TCTACGGATAGAATAAGGTTCTCCT 58.150 40.000 0.00 0.00 38.98 3.69
193 194 6.941436 TCTCTACGGATAGAATAAGGTTCTCC 59.059 42.308 0.00 0.00 36.98 3.71
194 195 7.361457 GCTCTCTACGGATAGAATAAGGTTCTC 60.361 44.444 0.00 0.00 36.98 2.87
195 196 6.431852 GCTCTCTACGGATAGAATAAGGTTCT 59.568 42.308 0.00 0.00 36.98 3.01
196 197 6.349528 GGCTCTCTACGGATAGAATAAGGTTC 60.350 46.154 0.00 0.00 36.98 3.62
197 198 5.477637 GGCTCTCTACGGATAGAATAAGGTT 59.522 44.000 0.00 0.00 36.98 3.50
198 199 5.011586 GGCTCTCTACGGATAGAATAAGGT 58.988 45.833 0.00 0.00 36.98 3.50
199 200 4.095185 CGGCTCTCTACGGATAGAATAAGG 59.905 50.000 0.00 0.00 36.98 2.69
200 201 4.696402 ACGGCTCTCTACGGATAGAATAAG 59.304 45.833 0.00 0.00 36.98 1.73
201 202 4.649692 ACGGCTCTCTACGGATAGAATAA 58.350 43.478 0.00 0.00 36.98 1.40
202 203 4.252073 GACGGCTCTCTACGGATAGAATA 58.748 47.826 0.00 0.00 36.98 1.75
203 204 3.075884 GACGGCTCTCTACGGATAGAAT 58.924 50.000 0.00 0.00 36.98 2.40
204 205 2.492012 GACGGCTCTCTACGGATAGAA 58.508 52.381 0.00 0.00 36.98 2.10
205 206 1.604947 CGACGGCTCTCTACGGATAGA 60.605 57.143 0.00 0.00 36.01 1.98
206 207 0.791422 CGACGGCTCTCTACGGATAG 59.209 60.000 0.00 0.00 0.00 2.08
207 208 1.226686 GCGACGGCTCTCTACGGATA 61.227 60.000 0.00 0.00 35.83 2.59
208 209 2.544698 GCGACGGCTCTCTACGGAT 61.545 63.158 0.00 0.00 35.83 4.18
209 210 3.200593 GCGACGGCTCTCTACGGA 61.201 66.667 0.00 0.00 35.83 4.69
210 211 4.253257 GGCGACGGCTCTCTACGG 62.253 72.222 15.00 0.00 39.81 4.02
222 223 4.539881 GAGAGACGAGGCGGCGAC 62.540 72.222 12.98 8.50 41.28 5.19
223 224 4.779966 AGAGAGACGAGGCGGCGA 62.780 66.667 12.98 0.00 41.28 5.54
224 225 4.544689 CAGAGAGACGAGGCGGCG 62.545 72.222 0.51 0.51 41.28 6.46
225 226 3.119709 CTCAGAGAGACGAGGCGGC 62.120 68.421 0.00 0.00 33.59 6.53
226 227 3.106552 CTCAGAGAGACGAGGCGG 58.893 66.667 0.00 0.00 0.00 6.13
227 228 1.927608 TTGCTCAGAGAGACGAGGCG 61.928 60.000 0.00 0.00 0.00 5.52
228 229 0.179140 CTTGCTCAGAGAGACGAGGC 60.179 60.000 0.00 0.00 0.00 4.70
229 230 1.132262 GTCTTGCTCAGAGAGACGAGG 59.868 57.143 0.00 0.00 31.54 4.63
230 231 1.809547 TGTCTTGCTCAGAGAGACGAG 59.190 52.381 12.46 1.03 42.02 4.18
231 232 1.537638 GTGTCTTGCTCAGAGAGACGA 59.462 52.381 12.46 2.69 42.02 4.20
232 233 1.268079 TGTGTCTTGCTCAGAGAGACG 59.732 52.381 12.46 0.00 42.02 4.18
233 234 3.377346 TTGTGTCTTGCTCAGAGAGAC 57.623 47.619 10.98 10.98 40.09 3.36
234 235 4.562347 GGATTTGTGTCTTGCTCAGAGAGA 60.562 45.833 0.00 0.00 29.34 3.10
235 236 3.683822 GGATTTGTGTCTTGCTCAGAGAG 59.316 47.826 0.00 0.00 29.34 3.20
236 237 3.326006 AGGATTTGTGTCTTGCTCAGAGA 59.674 43.478 0.00 0.00 29.34 3.10
237 238 3.672808 AGGATTTGTGTCTTGCTCAGAG 58.327 45.455 0.00 0.00 29.34 3.35
238 239 3.777106 AGGATTTGTGTCTTGCTCAGA 57.223 42.857 0.00 0.00 0.00 3.27
239 240 4.756642 TGTTAGGATTTGTGTCTTGCTCAG 59.243 41.667 0.00 0.00 0.00 3.35
240 241 4.713553 TGTTAGGATTTGTGTCTTGCTCA 58.286 39.130 0.00 0.00 0.00 4.26
241 242 5.689383 TTGTTAGGATTTGTGTCTTGCTC 57.311 39.130 0.00 0.00 0.00 4.26
242 243 6.096846 AGTTTTGTTAGGATTTGTGTCTTGCT 59.903 34.615 0.00 0.00 0.00 3.91
243 244 6.273071 AGTTTTGTTAGGATTTGTGTCTTGC 58.727 36.000 0.00 0.00 0.00 4.01
244 245 7.479980 TGAGTTTTGTTAGGATTTGTGTCTTG 58.520 34.615 0.00 0.00 0.00 3.02
245 246 7.639113 TGAGTTTTGTTAGGATTTGTGTCTT 57.361 32.000 0.00 0.00 0.00 3.01
246 247 7.639113 TTGAGTTTTGTTAGGATTTGTGTCT 57.361 32.000 0.00 0.00 0.00 3.41
247 248 8.696410 TTTTGAGTTTTGTTAGGATTTGTGTC 57.304 30.769 0.00 0.00 0.00 3.67
248 249 8.527810 TCTTTTGAGTTTTGTTAGGATTTGTGT 58.472 29.630 0.00 0.00 0.00 3.72
249 250 8.925161 TCTTTTGAGTTTTGTTAGGATTTGTG 57.075 30.769 0.00 0.00 0.00 3.33
267 268 6.016276 GGCTCCAGTTTTTCATACTCTTTTGA 60.016 38.462 0.00 0.00 0.00 2.69
268 269 6.152379 GGCTCCAGTTTTTCATACTCTTTTG 58.848 40.000 0.00 0.00 0.00 2.44
269 270 5.243954 GGGCTCCAGTTTTTCATACTCTTTT 59.756 40.000 0.00 0.00 0.00 2.27
270 271 4.767409 GGGCTCCAGTTTTTCATACTCTTT 59.233 41.667 0.00 0.00 0.00 2.52
271 272 4.043435 AGGGCTCCAGTTTTTCATACTCTT 59.957 41.667 0.00 0.00 0.00 2.85
272 273 3.589288 AGGGCTCCAGTTTTTCATACTCT 59.411 43.478 0.00 0.00 0.00 3.24
273 274 3.942115 GAGGGCTCCAGTTTTTCATACTC 59.058 47.826 0.00 0.00 0.00 2.59
274 275 3.956744 GAGGGCTCCAGTTTTTCATACT 58.043 45.455 0.00 0.00 0.00 2.12
301 302 4.564110 GTGGATACCGCCCCTGCC 62.564 72.222 0.00 0.00 0.00 4.85
311 312 0.532862 CATGGAGGCGTGGTGGATAC 60.533 60.000 0.00 0.00 0.00 2.24
312 313 1.695114 CCATGGAGGCGTGGTGGATA 61.695 60.000 5.56 0.00 31.59 2.59
313 314 2.591753 CATGGAGGCGTGGTGGAT 59.408 61.111 0.00 0.00 0.00 3.41
314 315 3.716195 CCATGGAGGCGTGGTGGA 61.716 66.667 5.56 0.00 31.59 4.02
323 324 0.181350 GTGGTCTTAGGCCATGGAGG 59.819 60.000 18.40 0.00 38.40 4.30
324 325 0.911769 TGTGGTCTTAGGCCATGGAG 59.088 55.000 18.40 3.48 38.40 3.86
325 326 0.911769 CTGTGGTCTTAGGCCATGGA 59.088 55.000 18.40 0.00 38.40 3.41
326 327 0.911769 TCTGTGGTCTTAGGCCATGG 59.088 55.000 9.42 7.63 38.40 3.66
327 328 2.237143 TCTTCTGTGGTCTTAGGCCATG 59.763 50.000 9.42 5.66 38.40 3.66
328 329 2.237392 GTCTTCTGTGGTCTTAGGCCAT 59.763 50.000 9.42 0.00 38.40 4.40
329 330 1.623811 GTCTTCTGTGGTCTTAGGCCA 59.376 52.381 0.00 0.00 0.00 5.36
330 331 1.404315 CGTCTTCTGTGGTCTTAGGCC 60.404 57.143 0.00 0.00 0.00 5.19
331 332 1.544691 TCGTCTTCTGTGGTCTTAGGC 59.455 52.381 0.00 0.00 0.00 3.93
332 333 2.164624 CCTCGTCTTCTGTGGTCTTAGG 59.835 54.545 0.00 0.00 0.00 2.69
333 334 2.820787 ACCTCGTCTTCTGTGGTCTTAG 59.179 50.000 0.00 0.00 0.00 2.18
334 335 2.872732 ACCTCGTCTTCTGTGGTCTTA 58.127 47.619 0.00 0.00 0.00 2.10
335 336 1.705873 ACCTCGTCTTCTGTGGTCTT 58.294 50.000 0.00 0.00 0.00 3.01
336 337 2.040012 TCTACCTCGTCTTCTGTGGTCT 59.960 50.000 0.00 0.00 32.74 3.85
337 338 2.162008 GTCTACCTCGTCTTCTGTGGTC 59.838 54.545 0.00 0.00 32.74 4.02
338 339 2.161030 GTCTACCTCGTCTTCTGTGGT 58.839 52.381 0.00 0.00 35.05 4.16
339 340 1.473278 GGTCTACCTCGTCTTCTGTGG 59.527 57.143 0.00 0.00 0.00 4.17
340 341 1.130749 CGGTCTACCTCGTCTTCTGTG 59.869 57.143 0.00 0.00 0.00 3.66
341 342 1.451067 CGGTCTACCTCGTCTTCTGT 58.549 55.000 0.00 0.00 0.00 3.41
342 343 0.733729 CCGGTCTACCTCGTCTTCTG 59.266 60.000 0.00 0.00 0.00 3.02
343 344 1.031029 GCCGGTCTACCTCGTCTTCT 61.031 60.000 1.90 0.00 0.00 2.85
344 345 1.432657 GCCGGTCTACCTCGTCTTC 59.567 63.158 1.90 0.00 0.00 2.87
345 346 2.404995 CGCCGGTCTACCTCGTCTT 61.405 63.158 1.90 0.00 0.00 3.01
346 347 2.823147 CGCCGGTCTACCTCGTCT 60.823 66.667 1.90 0.00 0.00 4.18
347 348 3.885521 CCGCCGGTCTACCTCGTC 61.886 72.222 1.90 0.00 0.00 4.20
371 372 3.277211 TTTCTCGTGCCTCCCGTCG 62.277 63.158 0.00 0.00 0.00 5.12
372 373 1.737008 GTTTCTCGTGCCTCCCGTC 60.737 63.158 0.00 0.00 0.00 4.79
373 374 2.342648 GTTTCTCGTGCCTCCCGT 59.657 61.111 0.00 0.00 0.00 5.28
374 375 2.434359 GGTTTCTCGTGCCTCCCG 60.434 66.667 0.00 0.00 0.00 5.14
375 376 1.262640 TAGGGTTTCTCGTGCCTCCC 61.263 60.000 0.00 0.00 35.56 4.30
376 377 0.175989 CTAGGGTTTCTCGTGCCTCC 59.824 60.000 0.00 0.00 0.00 4.30
377 378 0.460459 GCTAGGGTTTCTCGTGCCTC 60.460 60.000 0.00 0.00 0.00 4.70
378 379 1.597461 GCTAGGGTTTCTCGTGCCT 59.403 57.895 0.00 0.00 0.00 4.75
379 380 1.449778 GGCTAGGGTTTCTCGTGCC 60.450 63.158 0.00 0.00 32.43 5.01
380 381 0.321298 TTGGCTAGGGTTTCTCGTGC 60.321 55.000 0.00 0.00 0.00 5.34
381 382 1.676014 CCTTGGCTAGGGTTTCTCGTG 60.676 57.143 7.14 0.00 40.67 4.35
382 383 0.613777 CCTTGGCTAGGGTTTCTCGT 59.386 55.000 7.14 0.00 40.67 4.18
383 384 3.460648 CCTTGGCTAGGGTTTCTCG 57.539 57.895 7.14 0.00 40.67 4.04
391 392 2.040412 AGAAAGAACACCCTTGGCTAGG 59.960 50.000 8.11 8.11 44.33 3.02
392 393 3.425162 AGAAAGAACACCCTTGGCTAG 57.575 47.619 0.00 0.00 0.00 3.42
393 394 3.497942 GGAAGAAAGAACACCCTTGGCTA 60.498 47.826 0.00 0.00 0.00 3.93
394 395 2.587522 GAAGAAAGAACACCCTTGGCT 58.412 47.619 0.00 0.00 0.00 4.75
395 396 1.613925 GGAAGAAAGAACACCCTTGGC 59.386 52.381 0.00 0.00 0.00 4.52
396 397 2.887152 CAGGAAGAAAGAACACCCTTGG 59.113 50.000 0.00 0.00 0.00 3.61
397 398 3.555966 ACAGGAAGAAAGAACACCCTTG 58.444 45.455 0.00 0.00 0.00 3.61
398 399 3.953542 ACAGGAAGAAAGAACACCCTT 57.046 42.857 0.00 0.00 0.00 3.95
399 400 4.597507 TCATACAGGAAGAAAGAACACCCT 59.402 41.667 0.00 0.00 0.00 4.34
400 401 4.695928 GTCATACAGGAAGAAAGAACACCC 59.304 45.833 0.00 0.00 0.00 4.61
401 402 4.695928 GGTCATACAGGAAGAAAGAACACC 59.304 45.833 0.00 0.00 0.00 4.16
402 403 5.552178 AGGTCATACAGGAAGAAAGAACAC 58.448 41.667 0.00 0.00 0.00 3.32
403 404 5.544176 AGAGGTCATACAGGAAGAAAGAACA 59.456 40.000 0.00 0.00 0.00 3.18
404 405 6.043854 AGAGGTCATACAGGAAGAAAGAAC 57.956 41.667 0.00 0.00 0.00 3.01
405 406 6.688073 AAGAGGTCATACAGGAAGAAAGAA 57.312 37.500 0.00 0.00 0.00 2.52
406 407 6.295916 GGAAAGAGGTCATACAGGAAGAAAGA 60.296 42.308 0.00 0.00 0.00 2.52
407 408 5.877564 GGAAAGAGGTCATACAGGAAGAAAG 59.122 44.000 0.00 0.00 0.00 2.62
408 409 5.280521 GGGAAAGAGGTCATACAGGAAGAAA 60.281 44.000 0.00 0.00 0.00 2.52
409 410 4.225267 GGGAAAGAGGTCATACAGGAAGAA 59.775 45.833 0.00 0.00 0.00 2.52
410 411 3.775316 GGGAAAGAGGTCATACAGGAAGA 59.225 47.826 0.00 0.00 0.00 2.87
411 412 3.118223 GGGGAAAGAGGTCATACAGGAAG 60.118 52.174 0.00 0.00 0.00 3.46
412 413 2.844348 GGGGAAAGAGGTCATACAGGAA 59.156 50.000 0.00 0.00 0.00 3.36
413 414 2.045885 AGGGGAAAGAGGTCATACAGGA 59.954 50.000 0.00 0.00 0.00 3.86
414 415 2.171448 CAGGGGAAAGAGGTCATACAGG 59.829 54.545 0.00 0.00 0.00 4.00
415 416 2.171448 CCAGGGGAAAGAGGTCATACAG 59.829 54.545 0.00 0.00 0.00 2.74
416 417 2.196595 CCAGGGGAAAGAGGTCATACA 58.803 52.381 0.00 0.00 0.00 2.29
417 418 1.490910 CCCAGGGGAAAGAGGTCATAC 59.509 57.143 0.00 0.00 37.50 2.39
418 419 1.368203 TCCCAGGGGAAAGAGGTCATA 59.632 52.381 5.33 0.00 42.05 2.15
419 420 0.121197 TCCCAGGGGAAAGAGGTCAT 59.879 55.000 5.33 0.00 42.05 3.06
420 421 1.557085 TCCCAGGGGAAAGAGGTCA 59.443 57.895 5.33 0.00 42.05 4.02
421 422 4.581391 TCCCAGGGGAAAGAGGTC 57.419 61.111 5.33 0.00 42.05 3.85
430 431 4.353788 TGAGTCCAAAATATATCCCAGGGG 59.646 45.833 5.33 0.92 0.00 4.79
431 432 5.073691 ACTGAGTCCAAAATATATCCCAGGG 59.926 44.000 0.00 0.00 0.00 4.45
432 433 6.000219 CACTGAGTCCAAAATATATCCCAGG 59.000 44.000 0.00 0.00 0.00 4.45
433 434 6.484643 CACACTGAGTCCAAAATATATCCCAG 59.515 42.308 0.00 0.00 0.00 4.45
434 435 6.069673 ACACACTGAGTCCAAAATATATCCCA 60.070 38.462 0.00 0.00 0.00 4.37
435 436 6.260936 CACACACTGAGTCCAAAATATATCCC 59.739 42.308 0.00 0.00 0.00 3.85
436 437 6.823689 ACACACACTGAGTCCAAAATATATCC 59.176 38.462 0.00 0.00 0.00 2.59
437 438 7.334421 ACACACACACTGAGTCCAAAATATATC 59.666 37.037 0.00 0.00 0.00 1.63
438 439 7.168219 ACACACACACTGAGTCCAAAATATAT 58.832 34.615 0.00 0.00 0.00 0.86
439 440 6.530120 ACACACACACTGAGTCCAAAATATA 58.470 36.000 0.00 0.00 0.00 0.86
440 441 5.376625 ACACACACACTGAGTCCAAAATAT 58.623 37.500 0.00 0.00 0.00 1.28
441 442 4.776349 ACACACACACTGAGTCCAAAATA 58.224 39.130 0.00 0.00 0.00 1.40
442 443 3.620488 ACACACACACTGAGTCCAAAAT 58.380 40.909 0.00 0.00 0.00 1.82
443 444 3.066291 ACACACACACTGAGTCCAAAA 57.934 42.857 0.00 0.00 0.00 2.44
444 445 2.779755 ACACACACACTGAGTCCAAA 57.220 45.000 0.00 0.00 0.00 3.28
445 446 2.779755 AACACACACACTGAGTCCAA 57.220 45.000 0.00 0.00 0.00 3.53
446 447 2.779755 AAACACACACACTGAGTCCA 57.220 45.000 0.00 0.00 0.00 4.02
447 448 6.620733 GCATTATAAACACACACACTGAGTCC 60.621 42.308 0.00 0.00 0.00 3.85
448 449 6.147821 AGCATTATAAACACACACACTGAGTC 59.852 38.462 0.00 0.00 0.00 3.36
449 450 5.997746 AGCATTATAAACACACACACTGAGT 59.002 36.000 0.00 0.00 0.00 3.41
450 451 6.486253 AGCATTATAAACACACACACTGAG 57.514 37.500 0.00 0.00 0.00 3.35
451 452 6.262049 ACAAGCATTATAAACACACACACTGA 59.738 34.615 0.00 0.00 0.00 3.41
452 453 6.437928 ACAAGCATTATAAACACACACACTG 58.562 36.000 0.00 0.00 0.00 3.66
453 454 6.633500 ACAAGCATTATAAACACACACACT 57.367 33.333 0.00 0.00 0.00 3.55
454 455 8.964420 AATACAAGCATTATAAACACACACAC 57.036 30.769 0.00 0.00 0.00 3.82
455 456 9.973450 AAAATACAAGCATTATAAACACACACA 57.027 25.926 0.00 0.00 0.00 3.72
468 469 7.660112 TGTCACATCAAGAAAATACAAGCATT 58.340 30.769 0.00 0.00 0.00 3.56
529 530 6.473758 ACGAATTTAGGAGGTTAGCTTTCTT 58.526 36.000 0.00 0.00 0.00 2.52
530 531 6.051179 ACGAATTTAGGAGGTTAGCTTTCT 57.949 37.500 0.00 0.00 0.00 2.52
535 539 5.646793 AGGAAAACGAATTTAGGAGGTTAGC 59.353 40.000 0.00 0.00 0.00 3.09
538 542 5.877491 AGAGGAAAACGAATTTAGGAGGTT 58.123 37.500 0.00 0.00 0.00 3.50
569 573 6.042093 TGGTCTTATATTTAGGGACAGAGCAG 59.958 42.308 0.00 0.00 33.55 4.24
574 578 8.217799 TGGAAATGGTCTTATATTTAGGGACAG 58.782 37.037 0.00 0.00 0.00 3.51
576 580 8.218488 ACTGGAAATGGTCTTATATTTAGGGAC 58.782 37.037 0.00 0.00 0.00 4.46
578 582 8.996651 AACTGGAAATGGTCTTATATTTAGGG 57.003 34.615 0.00 0.00 0.00 3.53
584 588 8.840321 CGATTCAAACTGGAAATGGTCTTATAT 58.160 33.333 0.00 0.00 0.00 0.86
585 589 8.044309 TCGATTCAAACTGGAAATGGTCTTATA 58.956 33.333 0.00 0.00 0.00 0.98
586 590 6.884295 TCGATTCAAACTGGAAATGGTCTTAT 59.116 34.615 0.00 0.00 0.00 1.73
587 591 6.234920 TCGATTCAAACTGGAAATGGTCTTA 58.765 36.000 0.00 0.00 0.00 2.10
588 592 5.070001 TCGATTCAAACTGGAAATGGTCTT 58.930 37.500 0.00 0.00 0.00 3.01
589 593 4.651778 TCGATTCAAACTGGAAATGGTCT 58.348 39.130 0.00 0.00 0.00 3.85
590 594 5.371115 TTCGATTCAAACTGGAAATGGTC 57.629 39.130 0.00 0.00 0.00 4.02
591 595 5.982890 ATTCGATTCAAACTGGAAATGGT 57.017 34.783 0.00 0.00 0.00 3.55
592 596 6.158598 ACAATTCGATTCAAACTGGAAATGG 58.841 36.000 0.00 0.00 0.00 3.16
593 597 8.741101 TTACAATTCGATTCAAACTGGAAATG 57.259 30.769 0.00 0.00 0.00 2.32
594 598 9.757227 TTTTACAATTCGATTCAAACTGGAAAT 57.243 25.926 0.00 0.00 0.00 2.17
595 599 9.587772 TTTTTACAATTCGATTCAAACTGGAAA 57.412 25.926 0.00 0.00 0.00 3.13
596 600 9.243637 CTTTTTACAATTCGATTCAAACTGGAA 57.756 29.630 0.00 0.00 0.00 3.53
597 601 8.410141 ACTTTTTACAATTCGATTCAAACTGGA 58.590 29.630 0.00 0.00 0.00 3.86
598 602 8.574196 ACTTTTTACAATTCGATTCAAACTGG 57.426 30.769 0.00 0.00 0.00 4.00
599 603 9.450807 AGACTTTTTACAATTCGATTCAAACTG 57.549 29.630 0.00 0.00 0.00 3.16
614 618 9.603921 CCGTCCCTAAATATAAGACTTTTTACA 57.396 33.333 0.00 0.00 0.00 2.41
615 619 9.822185 TCCGTCCCTAAATATAAGACTTTTTAC 57.178 33.333 0.00 0.00 0.00 2.01
617 621 7.991460 CCTCCGTCCCTAAATATAAGACTTTTT 59.009 37.037 0.00 0.00 0.00 1.94
618 622 7.419865 CCCTCCGTCCCTAAATATAAGACTTTT 60.420 40.741 0.00 0.00 0.00 2.27
619 623 6.042897 CCCTCCGTCCCTAAATATAAGACTTT 59.957 42.308 0.00 0.00 0.00 2.66
620 624 5.543020 CCCTCCGTCCCTAAATATAAGACTT 59.457 44.000 0.00 0.00 0.00 3.01
621 625 5.085219 CCCTCCGTCCCTAAATATAAGACT 58.915 45.833 0.00 0.00 0.00 3.24
622 626 5.082425 TCCCTCCGTCCCTAAATATAAGAC 58.918 45.833 0.00 0.00 0.00 3.01
623 627 5.162903 ACTCCCTCCGTCCCTAAATATAAGA 60.163 44.000 0.00 0.00 0.00 2.10
624 628 5.085219 ACTCCCTCCGTCCCTAAATATAAG 58.915 45.833 0.00 0.00 0.00 1.73
625 629 5.083953 ACTCCCTCCGTCCCTAAATATAA 57.916 43.478 0.00 0.00 0.00 0.98
626 630 4.754411 ACTCCCTCCGTCCCTAAATATA 57.246 45.455 0.00 0.00 0.00 0.86
627 631 3.632420 ACTCCCTCCGTCCCTAAATAT 57.368 47.619 0.00 0.00 0.00 1.28
628 632 3.464833 AGTACTCCCTCCGTCCCTAAATA 59.535 47.826 0.00 0.00 0.00 1.40
629 633 2.246849 AGTACTCCCTCCGTCCCTAAAT 59.753 50.000 0.00 0.00 0.00 1.40
630 634 1.642762 AGTACTCCCTCCGTCCCTAAA 59.357 52.381 0.00 0.00 0.00 1.85
631 635 1.302907 AGTACTCCCTCCGTCCCTAA 58.697 55.000 0.00 0.00 0.00 2.69
632 636 2.196742 TAGTACTCCCTCCGTCCCTA 57.803 55.000 0.00 0.00 0.00 3.53
633 637 1.424684 GATAGTACTCCCTCCGTCCCT 59.575 57.143 0.00 0.00 0.00 4.20
634 638 1.424684 AGATAGTACTCCCTCCGTCCC 59.575 57.143 0.00 0.00 0.00 4.46
635 639 2.158638 ACAGATAGTACTCCCTCCGTCC 60.159 54.545 0.00 0.00 0.00 4.79
636 640 3.140623 GACAGATAGTACTCCCTCCGTC 58.859 54.545 0.00 0.00 0.00 4.79
637 641 2.158638 GGACAGATAGTACTCCCTCCGT 60.159 54.545 0.00 0.00 0.00 4.69
638 642 2.158652 TGGACAGATAGTACTCCCTCCG 60.159 54.545 0.00 0.00 29.93 4.63
639 643 3.596940 TGGACAGATAGTACTCCCTCC 57.403 52.381 0.00 0.00 29.93 4.30
640 644 5.011227 GGATTTGGACAGATAGTACTCCCTC 59.989 48.000 0.00 0.00 29.93 4.30
641 645 4.902448 GGATTTGGACAGATAGTACTCCCT 59.098 45.833 0.00 0.00 29.93 4.20
642 646 4.654262 TGGATTTGGACAGATAGTACTCCC 59.346 45.833 0.00 0.00 29.93 4.30
643 647 5.871396 TGGATTTGGACAGATAGTACTCC 57.129 43.478 0.00 0.00 29.93 3.85
644 648 7.103641 TGTTTGGATTTGGACAGATAGTACTC 58.896 38.462 0.00 0.00 29.93 2.59
645 649 7.016153 TGTTTGGATTTGGACAGATAGTACT 57.984 36.000 0.00 0.00 29.93 2.73
646 650 7.681939 TTGTTTGGATTTGGACAGATAGTAC 57.318 36.000 0.00 0.00 0.00 2.73
647 651 9.967451 TTATTGTTTGGATTTGGACAGATAGTA 57.033 29.630 0.00 0.00 0.00 1.82
648 652 8.877864 TTATTGTTTGGATTTGGACAGATAGT 57.122 30.769 0.00 0.00 0.00 2.12
649 653 9.573133 GTTTATTGTTTGGATTTGGACAGATAG 57.427 33.333 0.00 0.00 0.00 2.08
650 654 9.308000 AGTTTATTGTTTGGATTTGGACAGATA 57.692 29.630 0.00 0.00 0.00 1.98
651 655 8.193953 AGTTTATTGTTTGGATTTGGACAGAT 57.806 30.769 0.00 0.00 0.00 2.90
652 656 7.595819 AGTTTATTGTTTGGATTTGGACAGA 57.404 32.000 0.00 0.00 0.00 3.41
679 683 9.512588 CTAAGAAAAAGGATGGCATCAGTATAT 57.487 33.333 27.39 9.81 0.00 0.86
680 684 7.445402 GCTAAGAAAAAGGATGGCATCAGTATA 59.555 37.037 27.39 9.14 0.00 1.47
681 685 6.264067 GCTAAGAAAAAGGATGGCATCAGTAT 59.736 38.462 27.39 10.31 0.00 2.12
682 686 5.590259 GCTAAGAAAAAGGATGGCATCAGTA 59.410 40.000 27.39 7.43 0.00 2.74
683 687 4.400567 GCTAAGAAAAAGGATGGCATCAGT 59.599 41.667 27.39 12.38 0.00 3.41
684 688 4.400251 TGCTAAGAAAAAGGATGGCATCAG 59.600 41.667 27.39 14.19 0.00 2.90
685 689 4.343231 TGCTAAGAAAAAGGATGGCATCA 58.657 39.130 27.39 4.14 0.00 3.07
686 690 4.641989 TCTGCTAAGAAAAAGGATGGCATC 59.358 41.667 19.23 19.23 0.00 3.91
687 691 4.603131 TCTGCTAAGAAAAAGGATGGCAT 58.397 39.130 0.00 0.00 0.00 4.40
688 692 4.032960 TCTGCTAAGAAAAAGGATGGCA 57.967 40.909 0.00 0.00 0.00 4.92
689 693 4.218417 TGTTCTGCTAAGAAAAAGGATGGC 59.782 41.667 0.00 0.00 44.01 4.40
690 694 5.964958 TGTTCTGCTAAGAAAAAGGATGG 57.035 39.130 0.00 0.00 44.01 3.51
691 695 6.917533 ACATGTTCTGCTAAGAAAAAGGATG 58.082 36.000 0.00 0.00 44.01 3.51
692 696 7.885399 AGTACATGTTCTGCTAAGAAAAAGGAT 59.115 33.333 2.30 0.00 44.01 3.24
693 697 7.173218 CAGTACATGTTCTGCTAAGAAAAAGGA 59.827 37.037 18.03 0.00 44.01 3.36
694 698 7.173218 TCAGTACATGTTCTGCTAAGAAAAAGG 59.827 37.037 23.46 0.48 44.01 3.11
695 699 8.087982 TCAGTACATGTTCTGCTAAGAAAAAG 57.912 34.615 23.46 0.66 44.01 2.27
696 700 8.506437 CATCAGTACATGTTCTGCTAAGAAAAA 58.494 33.333 23.46 7.25 44.01 1.94
697 701 7.361201 GCATCAGTACATGTTCTGCTAAGAAAA 60.361 37.037 23.46 7.87 44.01 2.29
698 702 6.092670 GCATCAGTACATGTTCTGCTAAGAAA 59.907 38.462 23.46 8.51 44.01 2.52
699 703 5.582269 GCATCAGTACATGTTCTGCTAAGAA 59.418 40.000 23.46 9.14 40.20 2.52
700 704 5.111989 GCATCAGTACATGTTCTGCTAAGA 58.888 41.667 23.46 9.77 31.60 2.10
701 705 4.272018 GGCATCAGTACATGTTCTGCTAAG 59.728 45.833 23.46 14.81 33.43 2.18
702 706 4.191544 GGCATCAGTACATGTTCTGCTAA 58.808 43.478 23.46 10.42 33.43 3.09
703 707 3.197549 TGGCATCAGTACATGTTCTGCTA 59.802 43.478 23.46 11.28 33.43 3.49
704 708 2.026915 TGGCATCAGTACATGTTCTGCT 60.027 45.455 23.46 14.07 33.43 4.24
705 709 2.358957 TGGCATCAGTACATGTTCTGC 58.641 47.619 23.46 14.92 32.69 4.26
706 710 3.562973 GGATGGCATCAGTACATGTTCTG 59.437 47.826 27.39 22.57 0.00 3.02
707 711 3.434167 GGGATGGCATCAGTACATGTTCT 60.434 47.826 27.39 0.00 0.00 3.01
708 712 2.880890 GGGATGGCATCAGTACATGTTC 59.119 50.000 27.39 0.00 0.00 3.18
709 713 2.241941 TGGGATGGCATCAGTACATGTT 59.758 45.455 27.39 0.00 0.00 2.71
710 714 1.845791 TGGGATGGCATCAGTACATGT 59.154 47.619 27.39 2.69 0.00 3.21
711 715 2.643995 TGGGATGGCATCAGTACATG 57.356 50.000 27.39 0.00 0.00 3.21
712 716 2.984604 AGATGGGATGGCATCAGTACAT 59.015 45.455 27.39 22.65 0.00 2.29
713 717 2.369860 GAGATGGGATGGCATCAGTACA 59.630 50.000 27.39 19.48 0.00 2.90
725 729 3.322254 GTGATAGTGAACGGAGATGGGAT 59.678 47.826 0.00 0.00 0.00 3.85
728 732 3.381590 TCAGTGATAGTGAACGGAGATGG 59.618 47.826 0.00 0.00 0.00 3.51
729 733 4.639135 TCAGTGATAGTGAACGGAGATG 57.361 45.455 0.00 0.00 0.00 2.90
730 734 5.860941 AATCAGTGATAGTGAACGGAGAT 57.139 39.130 5.94 0.00 30.32 2.75
731 735 5.394224 GGAAATCAGTGATAGTGAACGGAGA 60.394 44.000 5.94 0.00 30.32 3.71
744 748 3.117701 TGTTTGGTGGAGGAAATCAGTGA 60.118 43.478 0.00 0.00 0.00 3.41
745 749 3.004734 GTGTTTGGTGGAGGAAATCAGTG 59.995 47.826 0.00 0.00 0.00 3.66
746 750 3.222603 GTGTTTGGTGGAGGAAATCAGT 58.777 45.455 0.00 0.00 0.00 3.41
899 946 2.431057 GGACAGAGATGATTACGGGTGT 59.569 50.000 0.00 0.00 0.00 4.16
900 947 2.224066 GGGACAGAGATGATTACGGGTG 60.224 54.545 0.00 0.00 0.00 4.61
902 949 2.320781 AGGGACAGAGATGATTACGGG 58.679 52.381 0.00 0.00 0.00 5.28
903 950 3.243907 GGAAGGGACAGAGATGATTACGG 60.244 52.174 0.00 0.00 0.00 4.02
905 952 4.742138 GCAGGAAGGGACAGAGATGATTAC 60.742 50.000 0.00 0.00 0.00 1.89
906 953 3.389329 GCAGGAAGGGACAGAGATGATTA 59.611 47.826 0.00 0.00 0.00 1.75
907 954 2.172293 GCAGGAAGGGACAGAGATGATT 59.828 50.000 0.00 0.00 0.00 2.57
908 955 1.767681 GCAGGAAGGGACAGAGATGAT 59.232 52.381 0.00 0.00 0.00 2.45
909 956 1.198713 GCAGGAAGGGACAGAGATGA 58.801 55.000 0.00 0.00 0.00 2.92
911 958 1.494960 GAGCAGGAAGGGACAGAGAT 58.505 55.000 0.00 0.00 0.00 2.75
918 966 2.046864 CGAGACGAGCAGGAAGGGA 61.047 63.158 0.00 0.00 0.00 4.20
926 2547 3.877357 CGCTAGCCGAGACGAGCA 61.877 66.667 9.66 0.00 40.02 4.26
954 2575 4.029809 GTGGACAGGGGAACGGGG 62.030 72.222 0.00 0.00 0.00 5.73
955 2576 3.246112 TGTGGACAGGGGAACGGG 61.246 66.667 0.00 0.00 0.00 5.28
956 2577 1.553690 ATCTGTGGACAGGGGAACGG 61.554 60.000 6.94 0.00 43.91 4.44
957 2578 0.324943 AATCTGTGGACAGGGGAACG 59.675 55.000 6.94 0.00 43.91 3.95
1193 2823 3.310860 AAGGGTTAGCGGGTCAGCG 62.311 63.158 0.00 0.00 43.00 5.18
1205 2835 0.534203 CGTACTGTGCCACAAGGGTT 60.534 55.000 0.00 0.00 39.65 4.11
1206 2836 1.070786 CGTACTGTGCCACAAGGGT 59.929 57.895 0.00 0.00 39.65 4.34
1217 2847 1.159713 TCGACACCGTCACGTACTGT 61.160 55.000 0.00 0.00 37.05 3.55
1509 3691 4.859304 TGTTGTCAACTACAGTACGGAT 57.141 40.909 16.45 0.00 39.87 4.18
1512 3694 6.578020 TTTCTTGTTGTCAACTACAGTACG 57.422 37.500 16.45 0.00 39.87 3.67
1538 3720 3.366422 CACAAAACCAGAAAAACACGGTG 59.634 43.478 6.58 6.58 0.00 4.94
1550 3732 1.660052 CGACGCACATCACAAAACCAG 60.660 52.381 0.00 0.00 0.00 4.00
1555 3745 2.445316 CAAAACGACGCACATCACAAA 58.555 42.857 0.00 0.00 0.00 2.83
1567 3757 2.427410 CTGCAGCGCCAAAACGAC 60.427 61.111 2.29 0.00 34.06 4.34
1614 3804 9.573166 TTTCTTCTGATGGAATTGTCTTAGAAA 57.427 29.630 0.00 0.00 33.01 2.52
1626 3816 4.460382 GCCAACATCTTTCTTCTGATGGAA 59.540 41.667 7.69 0.00 42.96 3.53
1668 3858 2.156098 ACAGTGGGGCATGGTCTGT 61.156 57.895 0.00 0.00 35.03 3.41
1671 3861 0.255890 ATACACAGTGGGGCATGGTC 59.744 55.000 5.31 0.00 0.00 4.02
1738 3939 3.820467 TGGGCTGACTTAAAATCACAGTG 59.180 43.478 0.00 0.00 0.00 3.66
1804 4005 6.959671 TTGGATTGTTTTCACTTTGTGTTC 57.040 33.333 0.00 0.00 34.79 3.18
1844 5326 6.042638 TCCGAAGAATTCTGAACTCTCAAT 57.957 37.500 9.17 0.00 44.75 2.57
1890 5372 7.048512 GCTATGGTGGTCAAAGTTATTACTCT 58.951 38.462 0.00 0.00 31.99 3.24
1924 5406 5.391950 CCAACCTGCAATGTATACACTGAAC 60.392 44.000 18.06 2.04 0.00 3.18
2238 5770 7.244192 CCTGATTGTAAGTTTGTAAGCTTAGC 58.756 38.462 6.38 0.00 33.32 3.09
2272 5804 9.726438 AAGCTTGTGTAAGTTGTAATCTTCTAT 57.274 29.630 0.00 0.00 36.27 1.98
2273 5805 9.204570 GAAGCTTGTGTAAGTTGTAATCTTCTA 57.795 33.333 2.10 0.00 36.27 2.10
2317 5850 6.653320 TGTTGTAGAAGCAGAATTCGGTTATT 59.347 34.615 7.44 0.78 34.27 1.40
2330 5863 2.483876 GACTGCTGTGTTGTAGAAGCA 58.516 47.619 0.00 0.00 43.10 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.