Multiple sequence alignment - TraesCS7D01G414200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G414200 chr7D 100.000 3553 0 0 1 3553 532613977 532610425 0.000000e+00 6562
1 TraesCS7D01G414200 chr7D 86.489 903 116 4 1650 2546 5352008 5351106 0.000000e+00 987
2 TraesCS7D01G414200 chr7B 96.740 1994 45 8 744 2725 572959886 572957901 0.000000e+00 3304
3 TraesCS7D01G414200 chr7B 88.582 543 34 12 2717 3242 572954113 572953582 5.000000e-178 634
4 TraesCS7D01G414200 chr7B 94.245 278 13 2 3272 3547 572952918 572952642 4.240000e-114 422
5 TraesCS7D01G414200 chr7B 93.863 277 15 2 3272 3547 572953229 572952954 1.970000e-112 416
6 TraesCS7D01G414200 chr7B 88.976 127 10 2 198 320 572962435 572962309 1.710000e-33 154
7 TraesCS7D01G414200 chr7A 95.879 1626 59 3 1001 2621 612757587 612755965 0.000000e+00 2625
8 TraesCS7D01G414200 chr7A 85.762 899 115 4 1650 2546 6803082 6803969 0.000000e+00 939
9 TraesCS7D01G414200 chr7A 85.246 549 35 21 198 727 612758145 612757624 1.130000e-144 523
10 TraesCS7D01G414200 chr7A 89.899 99 7 2 3244 3342 612755943 612755848 1.340000e-24 124
11 TraesCS7D01G414200 chr1B 90.900 989 80 5 1593 2581 62723334 62724312 0.000000e+00 1319
12 TraesCS7D01G414200 chr1B 91.851 589 40 3 974 1557 62722602 62723187 0.000000e+00 815
13 TraesCS7D01G414200 chr1B 82.222 495 79 8 1052 1543 62720069 62720557 5.490000e-113 418
14 TraesCS7D01G414200 chr1B 86.861 137 16 2 2639 2775 602246148 602246282 6.140000e-33 152
15 TraesCS7D01G414200 chr1D 90.495 989 80 3 1593 2581 42762920 42763894 0.000000e+00 1293
16 TraesCS7D01G414200 chr1D 91.622 561 44 1 997 1557 42762214 42762771 0.000000e+00 773
17 TraesCS7D01G414200 chr1D 91.620 537 45 0 1643 2179 42711539 42711003 0.000000e+00 743
18 TraesCS7D01G414200 chr1D 89.483 561 57 1 997 1557 42625346 42624788 0.000000e+00 708
19 TraesCS7D01G414200 chr1D 89.007 564 60 1 994 1557 42712260 42711699 0.000000e+00 697
20 TraesCS7D01G414200 chr1D 88.250 400 35 10 2777 3174 143545307 143544918 5.370000e-128 468
21 TraesCS7D01G414200 chr1D 87.595 395 38 7 2777 3170 6402641 6403025 7.000000e-122 448
22 TraesCS7D01G414200 chr1D 86.861 137 16 2 2639 2775 6402892 6403026 6.140000e-33 152
23 TraesCS7D01G414200 chr1D 87.313 134 15 2 2642 2775 143545054 143544923 6.140000e-33 152
24 TraesCS7D01G414200 chr1A 89.908 981 91 3 1593 2573 42255263 42256235 0.000000e+00 1256
25 TraesCS7D01G414200 chr1A 91.060 604 52 1 956 1557 42254525 42255128 0.000000e+00 815
26 TraesCS7D01G414200 chr1A 88.889 585 63 1 975 1557 42220808 42220224 0.000000e+00 719
27 TraesCS7D01G414200 chr1A 87.605 597 73 1 1984 2580 42218025 42217430 0.000000e+00 691
28 TraesCS7D01G414200 chr1A 93.706 286 17 1 1707 1992 42218496 42218212 9.120000e-116 427
29 TraesCS7D01G414200 chr4A 86.489 903 116 4 1650 2546 737139924 737140826 0.000000e+00 987
30 TraesCS7D01G414200 chr3B 89.086 394 33 7 2777 3170 580790076 580789693 6.900000e-132 481
31 TraesCS7D01G414200 chr3B 87.000 400 39 11 2777 3172 13422677 13423067 4.210000e-119 438
32 TraesCS7D01G414200 chr3B 86.131 137 17 2 2639 2775 13422930 13423064 2.860000e-31 147
33 TraesCS7D01G414200 chr2A 87.879 396 37 6 2777 3170 19378354 19378740 4.180000e-124 455
34 TraesCS7D01G414200 chr2D 87.595 395 39 8 2777 3170 614325893 614325508 1.950000e-122 449
35 TraesCS7D01G414200 chr2D 87.313 134 15 2 2642 2775 532192712 532192581 6.140000e-33 152
36 TraesCS7D01G414200 chr2D 87.313 134 15 2 2642 2775 614325638 614325507 6.140000e-33 152
37 TraesCS7D01G414200 chr5D 87.342 395 39 7 2777 3170 263355857 263355473 3.260000e-120 442
38 TraesCS7D01G414200 chr5D 88.060 134 14 2 2642 2775 263355603 263355472 1.320000e-34 158
39 TraesCS7D01G414200 chr3D 86.441 413 45 6 2778 3188 576745783 576746186 3.260000e-120 442
40 TraesCS7D01G414200 chr5A 86.331 139 17 2 2639 2777 333370642 333370778 2.210000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G414200 chr7D 532610425 532613977 3552 True 6562.000000 6562 100.000000 1 3553 1 chr7D.!!$R2 3552
1 TraesCS7D01G414200 chr7D 5351106 5352008 902 True 987.000000 987 86.489000 1650 2546 1 chr7D.!!$R1 896
2 TraesCS7D01G414200 chr7B 572952642 572962435 9793 True 986.000000 3304 92.481200 198 3547 5 chr7B.!!$R1 3349
3 TraesCS7D01G414200 chr7A 612755848 612758145 2297 True 1090.666667 2625 90.341333 198 3342 3 chr7A.!!$R1 3144
4 TraesCS7D01G414200 chr7A 6803082 6803969 887 False 939.000000 939 85.762000 1650 2546 1 chr7A.!!$F1 896
5 TraesCS7D01G414200 chr1B 62720069 62724312 4243 False 850.666667 1319 88.324333 974 2581 3 chr1B.!!$F2 1607
6 TraesCS7D01G414200 chr1D 42762214 42763894 1680 False 1033.000000 1293 91.058500 997 2581 2 chr1D.!!$F2 1584
7 TraesCS7D01G414200 chr1D 42711003 42712260 1257 True 720.000000 743 90.313500 994 2179 2 chr1D.!!$R2 1185
8 TraesCS7D01G414200 chr1D 42624788 42625346 558 True 708.000000 708 89.483000 997 1557 1 chr1D.!!$R1 560
9 TraesCS7D01G414200 chr1A 42254525 42256235 1710 False 1035.500000 1256 90.484000 956 2573 2 chr1A.!!$F1 1617
10 TraesCS7D01G414200 chr1A 42217430 42220808 3378 True 612.333333 719 90.066667 975 2580 3 chr1A.!!$R1 1605
11 TraesCS7D01G414200 chr4A 737139924 737140826 902 False 987.000000 987 86.489000 1650 2546 1 chr4A.!!$F1 896

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
102 103 0.033920 GTCGTAAAGGGTCCGGTTGT 59.966 55.0 0.0 0.0 0.00 3.32 F
194 195 0.321210 CAGTATGCCGGTGGTGTTGA 60.321 55.0 1.9 0.0 0.00 3.18 F
1575 3629 0.670546 AGCACCACACGTATGCTCAC 60.671 55.0 9.3 0.0 46.68 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1591 3645 0.947244 CCATGGCAGACTATTTCGCC 59.053 55.000 0.0 0.0 41.56 5.54 R
1652 3806 1.211969 CGTGATCGTGTCCTTCCGT 59.788 57.895 0.0 0.0 0.00 4.69 R
3405 11409 0.033504 ATTGCACTTCGTGACGGTCT 59.966 50.000 4.7 0.0 35.23 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.982395 CCGCTGTCTCCACTACCCA 60.982 63.158 0.00 0.00 0.00 4.51
25 26 1.330655 CCGCTGTCTCCACTACCCAT 61.331 60.000 0.00 0.00 0.00 4.00
26 27 0.537188 CGCTGTCTCCACTACCCATT 59.463 55.000 0.00 0.00 0.00 3.16
27 28 1.740380 CGCTGTCTCCACTACCCATTG 60.740 57.143 0.00 0.00 0.00 2.82
28 29 1.407437 GCTGTCTCCACTACCCATTGG 60.407 57.143 0.00 0.00 37.80 3.16
56 57 1.069906 CACGGCGCTATTATTTGAGCC 60.070 52.381 6.90 4.28 43.95 4.70
58 59 0.517316 GGCGCTATTATTTGAGCCCG 59.483 55.000 7.64 0.00 42.08 6.13
59 60 0.110192 GCGCTATTATTTGAGCCCGC 60.110 55.000 0.00 0.00 35.13 6.13
60 61 1.225855 CGCTATTATTTGAGCCCGCA 58.774 50.000 0.00 0.00 35.13 5.69
61 62 1.069906 CGCTATTATTTGAGCCCGCAC 60.070 52.381 0.00 0.00 35.13 5.34
63 64 2.571212 CTATTATTTGAGCCCGCACCA 58.429 47.619 0.00 0.00 0.00 4.17
75 76 3.637273 GCACCACCGTCTCCCCTT 61.637 66.667 0.00 0.00 0.00 3.95
76 77 3.157680 CACCACCGTCTCCCCTTT 58.842 61.111 0.00 0.00 0.00 3.11
91 92 1.435577 CCTTTGGGACGGTCGTAAAG 58.564 55.000 20.03 20.03 33.58 1.85
92 93 1.435577 CTTTGGGACGGTCGTAAAGG 58.564 55.000 19.57 6.06 0.00 3.11
96 97 1.216444 GGACGGTCGTAAAGGGTCC 59.784 63.158 1.43 0.00 40.24 4.46
97 98 1.153958 GACGGTCGTAAAGGGTCCG 60.154 63.158 0.00 0.00 45.53 4.79
101 102 0.671472 GGTCGTAAAGGGTCCGGTTG 60.671 60.000 0.00 0.00 0.00 3.77
102 103 0.033920 GTCGTAAAGGGTCCGGTTGT 59.966 55.000 0.00 0.00 0.00 3.32
103 104 1.272212 GTCGTAAAGGGTCCGGTTGTA 59.728 52.381 0.00 0.00 0.00 2.41
104 105 1.967066 TCGTAAAGGGTCCGGTTGTAA 59.033 47.619 0.00 0.00 0.00 2.41
106 107 3.007831 TCGTAAAGGGTCCGGTTGTAAAT 59.992 43.478 0.00 0.00 0.00 1.40
107 108 4.221703 TCGTAAAGGGTCCGGTTGTAAATA 59.778 41.667 0.00 0.00 0.00 1.40
108 109 4.329801 CGTAAAGGGTCCGGTTGTAAATAC 59.670 45.833 0.00 0.00 0.00 1.89
109 110 4.645863 AAAGGGTCCGGTTGTAAATACT 57.354 40.909 0.00 0.00 0.00 2.12
110 111 3.900966 AGGGTCCGGTTGTAAATACTC 57.099 47.619 0.00 0.00 0.00 2.59
111 112 3.447950 AGGGTCCGGTTGTAAATACTCT 58.552 45.455 0.00 0.00 0.00 3.24
112 113 3.842436 AGGGTCCGGTTGTAAATACTCTT 59.158 43.478 0.00 0.00 0.00 2.85
113 114 5.025453 AGGGTCCGGTTGTAAATACTCTTA 58.975 41.667 0.00 0.00 0.00 2.10
114 115 5.484998 AGGGTCCGGTTGTAAATACTCTTAA 59.515 40.000 0.00 0.00 0.00 1.85
116 117 6.165577 GGTCCGGTTGTAAATACTCTTAACA 58.834 40.000 0.00 0.00 0.00 2.41
117 118 6.820152 GGTCCGGTTGTAAATACTCTTAACAT 59.180 38.462 0.00 0.00 0.00 2.71
118 119 7.981225 GGTCCGGTTGTAAATACTCTTAACATA 59.019 37.037 0.00 0.00 0.00 2.29
119 120 9.538508 GTCCGGTTGTAAATACTCTTAACATAT 57.461 33.333 0.00 0.00 0.00 1.78
130 131 6.851222 ACTCTTAACATATTTGCTGATCGG 57.149 37.500 0.00 0.00 0.00 4.18
132 133 4.515191 TCTTAACATATTTGCTGATCGGCC 59.485 41.667 23.64 6.55 0.00 6.13
134 135 1.133823 ACATATTTGCTGATCGGCCCA 60.134 47.619 23.64 10.52 0.00 5.36
135 136 1.955778 CATATTTGCTGATCGGCCCAA 59.044 47.619 23.64 16.19 0.00 4.12
136 137 1.388547 TATTTGCTGATCGGCCCAAC 58.611 50.000 23.64 0.00 0.00 3.77
137 138 0.611618 ATTTGCTGATCGGCCCAACA 60.612 50.000 23.64 1.33 0.00 3.33
138 139 1.523154 TTTGCTGATCGGCCCAACAC 61.523 55.000 23.64 0.00 0.00 3.32
139 140 2.045926 GCTGATCGGCCCAACACT 60.046 61.111 16.13 0.00 0.00 3.55
140 141 1.675641 GCTGATCGGCCCAACACTT 60.676 57.895 16.13 0.00 0.00 3.16
141 142 1.244019 GCTGATCGGCCCAACACTTT 61.244 55.000 16.13 0.00 0.00 2.66
142 143 0.523072 CTGATCGGCCCAACACTTTG 59.477 55.000 0.00 0.00 0.00 2.77
185 186 6.817765 AAAAATATGTATCCAGTATGCCGG 57.182 37.500 0.00 0.00 31.97 6.13
186 187 5.499004 AAATATGTATCCAGTATGCCGGT 57.501 39.130 1.90 0.00 31.97 5.28
190 191 0.756294 TATCCAGTATGCCGGTGGTG 59.244 55.000 1.90 0.00 32.73 4.17
191 192 1.271840 ATCCAGTATGCCGGTGGTGT 61.272 55.000 1.90 0.00 32.73 4.16
192 193 1.002624 CCAGTATGCCGGTGGTGTT 60.003 57.895 1.90 0.00 31.97 3.32
193 194 1.305219 CCAGTATGCCGGTGGTGTTG 61.305 60.000 1.90 0.00 31.97 3.33
194 195 0.321210 CAGTATGCCGGTGGTGTTGA 60.321 55.000 1.90 0.00 0.00 3.18
222 223 1.397390 ATTGCCTATTGCCAGCAGCC 61.397 55.000 0.00 0.00 42.71 4.85
236 237 2.035704 CAGCAGCCGAGTGATTCTAGAT 59.964 50.000 0.00 0.00 0.00 1.98
327 598 7.691993 ACCTAGGTGTCATCTTATACCATTT 57.308 36.000 15.42 0.00 33.31 2.32
337 608 9.474920 GTCATCTTATACCATTTCTCTTCAGAG 57.525 37.037 0.00 0.00 43.36 3.35
339 610 9.474920 CATCTTATACCATTTCTCTTCAGAGTC 57.525 37.037 3.73 0.00 42.60 3.36
340 611 8.595362 TCTTATACCATTTCTCTTCAGAGTCA 57.405 34.615 3.73 0.00 42.60 3.41
341 612 9.206690 TCTTATACCATTTCTCTTCAGAGTCAT 57.793 33.333 3.73 0.00 42.60 3.06
343 614 7.673641 ATACCATTTCTCTTCAGAGTCATCT 57.326 36.000 3.73 0.00 42.60 2.90
362 633 7.986320 AGTCATCTCATCTACATTTTGAAGGAG 59.014 37.037 0.00 0.00 0.00 3.69
409 682 3.902467 TCAAGGATGCTCTGCTCATAGAT 59.098 43.478 0.00 0.00 0.00 1.98
465 741 4.458295 CAGGAAGAACAACTCTACGGTAGA 59.542 45.833 16.50 16.50 32.46 2.59
494 770 2.617532 GCCAAAGAGCTTCTCCATGACT 60.618 50.000 0.00 0.00 0.00 3.41
527 803 4.283212 CCATTGATGGGTGGTTACTGTTTT 59.717 41.667 1.92 0.00 44.31 2.43
528 804 4.927978 TTGATGGGTGGTTACTGTTTTG 57.072 40.909 0.00 0.00 0.00 2.44
529 805 3.226777 TGATGGGTGGTTACTGTTTTGG 58.773 45.455 0.00 0.00 0.00 3.28
531 807 1.334160 GGGTGGTTACTGTTTTGGGG 58.666 55.000 0.00 0.00 0.00 4.96
543 835 1.133945 GTTTTGGGGCAATGGTGGTTT 60.134 47.619 0.00 0.00 0.00 3.27
577 869 1.884075 TACATGTGCGCGAAGGAGGT 61.884 55.000 12.10 0.00 0.00 3.85
583 875 4.421479 CGCGAAGGAGGTGCGTCT 62.421 66.667 0.00 0.00 46.29 4.18
584 876 2.507324 GCGAAGGAGGTGCGTCTC 60.507 66.667 0.00 0.00 0.00 3.36
585 877 2.202492 CGAAGGAGGTGCGTCTCG 60.202 66.667 0.92 0.00 34.74 4.04
586 878 2.182030 GAAGGAGGTGCGTCTCGG 59.818 66.667 0.92 0.00 34.74 4.63
587 879 3.358076 GAAGGAGGTGCGTCTCGGG 62.358 68.421 0.92 0.00 34.74 5.14
591 883 3.432051 GAGGTGCGTCTCGGGGATG 62.432 68.421 0.00 0.00 0.00 3.51
592 884 3.458163 GGTGCGTCTCGGGGATGA 61.458 66.667 0.07 0.00 32.95 2.92
593 885 2.797278 GGTGCGTCTCGGGGATGAT 61.797 63.158 0.07 0.00 32.95 2.45
634 1123 2.862541 CGCATGGGAGGGAATATTTGA 58.137 47.619 3.11 0.00 0.00 2.69
636 1125 3.254166 CGCATGGGAGGGAATATTTGAAG 59.746 47.826 3.11 0.00 0.00 3.02
738 2731 2.527951 ATCTGCAGGGACGTGCCTTC 62.528 60.000 27.80 22.85 43.28 3.46
780 2812 4.621034 CGAAACGCCAGATTAGCAAATTTT 59.379 37.500 0.00 0.00 0.00 1.82
784 2816 4.218417 ACGCCAGATTAGCAAATTTTGACT 59.782 37.500 13.26 11.21 0.00 3.41
791 2823 8.840867 CAGATTAGCAAATTTTGACTAAACGTC 58.159 33.333 19.98 15.73 43.14 4.34
834 2866 2.565834 AGAGCGGTAGCCAGTAGAAAAA 59.434 45.455 0.00 0.00 46.67 1.94
932 2964 3.114616 CGGTGCTCAGGTCTTGCG 61.115 66.667 0.00 0.00 0.00 4.85
933 2965 3.426568 GGTGCTCAGGTCTTGCGC 61.427 66.667 0.00 0.00 38.02 6.09
949 2981 1.784062 CGCTCTTGAAAGGCGAGTG 59.216 57.895 16.09 0.16 43.53 3.51
950 2982 0.946221 CGCTCTTGAAAGGCGAGTGT 60.946 55.000 16.09 0.00 43.53 3.55
951 2983 0.793250 GCTCTTGAAAGGCGAGTGTC 59.207 55.000 0.00 0.00 0.00 3.67
952 2984 1.063806 CTCTTGAAAGGCGAGTGTCG 58.936 55.000 0.00 0.00 43.89 4.35
1014 3050 1.406539 GTGATCATGGCGCAAAAGGAT 59.593 47.619 10.83 6.80 0.00 3.24
1530 3566 2.741092 GTCCACCTGCTCACCGAA 59.259 61.111 0.00 0.00 0.00 4.30
1575 3629 0.670546 AGCACCACACGTATGCTCAC 60.671 55.000 9.30 0.00 46.68 3.51
1652 3806 2.280797 GGACGTGTTGCAGAGCCA 60.281 61.111 0.00 0.00 0.00 4.75
1997 5840 1.751924 GTGCTCTACATCTCCTTCGGT 59.248 52.381 0.00 0.00 0.00 4.69
2297 6153 1.965754 GCTTCCCTCTGCTCACCGAT 61.966 60.000 0.00 0.00 0.00 4.18
2654 6511 9.702726 CTATGTATAATTGTTCACGAAACTTGG 57.297 33.333 0.00 0.00 38.76 3.61
2665 6522 1.077357 AAACTTGGACGTGCCCACA 60.077 52.632 4.04 0.00 35.62 4.17
2667 6524 0.398696 AACTTGGACGTGCCCACATA 59.601 50.000 4.04 0.00 35.62 2.29
2669 6526 0.321210 CTTGGACGTGCCCACATACA 60.321 55.000 4.04 0.00 35.62 2.29
2673 6530 0.098728 GACGTGCCCACATACAATGC 59.901 55.000 0.00 0.00 0.00 3.56
2684 6541 2.610833 ACATACAATGCTGAGATGTGCG 59.389 45.455 0.00 0.00 33.92 5.34
2688 6545 1.300971 AATGCTGAGATGTGCGCGTT 61.301 50.000 8.43 0.00 0.00 4.84
2703 6560 2.906161 GCGCGTTAAATTTGTGTTCGAT 59.094 40.909 8.43 0.00 0.00 3.59
2778 10430 6.483307 TCCATATGCTAAAGTGAATTTCCGAG 59.517 38.462 0.00 0.00 32.01 4.63
2882 10534 7.066163 TCTGACAAAATGATTCTCGCATACATT 59.934 33.333 0.00 0.00 33.50 2.71
2885 10537 7.537715 ACAAAATGATTCTCGCATACATTTCA 58.462 30.769 0.00 0.00 39.26 2.69
2926 10578 2.096335 ACTTGTTTCGTGGAAAACCGAC 59.904 45.455 0.00 0.00 38.16 4.79
2933 10586 2.748532 TCGTGGAAAACCGACAACTTTT 59.251 40.909 0.00 0.00 0.00 2.27
2951 10604 7.818930 ACAACTTTTATGTCATATGCAAAAGGG 59.181 33.333 21.95 18.20 39.42 3.95
2985 10638 5.803461 AGTGTTTAAAAAGGCTTTTCACGAC 59.197 36.000 24.28 18.96 34.41 4.34
2989 10642 4.385358 AAAAAGGCTTTTCACGACACAT 57.615 36.364 24.28 3.95 28.09 3.21
2990 10643 3.626028 AAAGGCTTTTCACGACACATC 57.374 42.857 6.68 0.00 0.00 3.06
3075 10730 4.476628 ACATACAGTGATGAGATGTGCA 57.523 40.909 0.00 0.00 29.75 4.57
3091 10746 1.257675 GTGCACGCCAAATTTGTGTTC 59.742 47.619 16.73 9.78 36.04 3.18
3093 10748 1.127701 CACGCCAAATTTGTGTTCGG 58.872 50.000 16.73 1.67 0.00 4.30
3094 10749 1.025812 ACGCCAAATTTGTGTTCGGA 58.974 45.000 16.73 0.00 0.00 4.55
3095 10750 1.611491 ACGCCAAATTTGTGTTCGGAT 59.389 42.857 16.73 0.00 0.00 4.18
3162 10817 1.766494 TATGCTCCCATGTGCCAAAG 58.234 50.000 0.00 0.00 32.85 2.77
3166 10821 1.843368 CTCCCATGTGCCAAAGTGAT 58.157 50.000 0.00 0.00 0.00 3.06
3234 10903 1.850377 TGCTTTCATGTGCCAAAACG 58.150 45.000 0.00 0.00 0.00 3.60
3240 10909 0.664166 CATGTGCCAAAACGCCACTC 60.664 55.000 0.00 0.00 0.00 3.51
3241 10910 0.823356 ATGTGCCAAAACGCCACTCT 60.823 50.000 0.00 0.00 0.00 3.24
3242 10911 1.282875 GTGCCAAAACGCCACTCTC 59.717 57.895 0.00 0.00 0.00 3.20
3243 10912 1.148273 TGCCAAAACGCCACTCTCT 59.852 52.632 0.00 0.00 0.00 3.10
3244 10913 0.884704 TGCCAAAACGCCACTCTCTC 60.885 55.000 0.00 0.00 0.00 3.20
3245 10914 0.603975 GCCAAAACGCCACTCTCTCT 60.604 55.000 0.00 0.00 0.00 3.10
3246 10915 1.884235 CCAAAACGCCACTCTCTCTT 58.116 50.000 0.00 0.00 0.00 2.85
3247 10916 2.222027 CCAAAACGCCACTCTCTCTTT 58.778 47.619 0.00 0.00 0.00 2.52
3248 10917 2.031682 CCAAAACGCCACTCTCTCTTTG 60.032 50.000 0.00 0.00 0.00 2.77
3249 10918 2.614057 CAAAACGCCACTCTCTCTTTGT 59.386 45.455 0.00 0.00 0.00 2.83
3250 10919 3.746045 AAACGCCACTCTCTCTTTGTA 57.254 42.857 0.00 0.00 0.00 2.41
3295 11298 9.595823 GTAGTACTTAATAGCCATCAAAAGTCA 57.404 33.333 0.00 0.00 0.00 3.41
3365 11369 0.615850 AGCTCTTGCCTTAGACCCAC 59.384 55.000 0.00 0.00 40.80 4.61
3370 11374 0.250124 TTGCCTTAGACCCACACACG 60.250 55.000 0.00 0.00 0.00 4.49
3395 11399 5.457799 CCCTCTATAACACGTTATCAACACG 59.542 44.000 5.72 0.00 43.52 4.49
3405 11409 3.612423 CGTTATCAACACGATGCTCTCAA 59.388 43.478 0.00 0.00 40.20 3.02
3406 11410 4.259570 CGTTATCAACACGATGCTCTCAAG 60.260 45.833 0.00 0.00 40.20 3.02
3414 11730 1.634702 GATGCTCTCAAGACCGTCAC 58.365 55.000 0.40 0.00 0.00 3.67
3439 11755 7.022979 CGAAGTGCAATTACATCATCAAAGAA 58.977 34.615 0.00 0.00 0.00 2.52
3526 11842 1.782044 AATTGTCCGTGCATTGCAAC 58.218 45.000 13.94 8.93 41.47 4.17
3547 11863 2.569853 CGGGGGCATACATATTACTCCA 59.430 50.000 0.00 0.00 0.00 3.86
3548 11864 3.199946 CGGGGGCATACATATTACTCCAT 59.800 47.826 0.00 0.00 0.00 3.41
3549 11865 4.683400 CGGGGGCATACATATTACTCCATC 60.683 50.000 0.00 0.00 0.00 3.51
3550 11866 4.385310 GGGGGCATACATATTACTCCATCC 60.385 50.000 0.00 0.00 0.00 3.51
3551 11867 4.442706 GGGCATACATATTACTCCATCCG 58.557 47.826 0.00 0.00 0.00 4.18
3552 11868 4.081087 GGGCATACATATTACTCCATCCGT 60.081 45.833 0.00 0.00 0.00 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.129737 TAGTGGAGACAGCGGCGC 62.130 66.667 26.86 26.86 44.46 6.53
7 8 0.537188 AATGGGTAGTGGAGACAGCG 59.463 55.000 0.00 0.00 44.46 5.18
8 9 1.407437 CCAATGGGTAGTGGAGACAGC 60.407 57.143 0.00 0.00 44.70 4.40
9 10 2.698855 CCAATGGGTAGTGGAGACAG 57.301 55.000 0.00 0.00 44.70 3.51
36 37 1.069906 GGCTCAAATAATAGCGCCGTG 60.070 52.381 2.29 0.00 39.71 4.94
37 38 1.226746 GGCTCAAATAATAGCGCCGT 58.773 50.000 2.29 0.00 39.71 5.68
39 40 0.517316 CGGGCTCAAATAATAGCGCC 59.483 55.000 2.29 0.00 45.86 6.53
40 41 0.110192 GCGGGCTCAAATAATAGCGC 60.110 55.000 0.00 0.00 45.35 5.92
43 44 2.290641 GTGGTGCGGGCTCAAATAATAG 59.709 50.000 0.00 0.00 0.00 1.73
44 45 2.294074 GTGGTGCGGGCTCAAATAATA 58.706 47.619 0.00 0.00 0.00 0.98
47 48 1.377987 GGTGGTGCGGGCTCAAATA 60.378 57.895 0.00 0.00 0.00 1.40
48 49 2.676471 GGTGGTGCGGGCTCAAAT 60.676 61.111 0.00 0.00 0.00 2.32
58 59 3.192103 AAAGGGGAGACGGTGGTGC 62.192 63.158 0.00 0.00 0.00 5.01
59 60 1.302511 CAAAGGGGAGACGGTGGTG 60.303 63.158 0.00 0.00 0.00 4.17
60 61 2.526046 CCAAAGGGGAGACGGTGGT 61.526 63.158 0.00 0.00 40.01 4.16
61 62 2.351276 CCAAAGGGGAGACGGTGG 59.649 66.667 0.00 0.00 40.01 4.61
73 74 1.435577 CCTTTACGACCGTCCCAAAG 58.564 55.000 0.00 4.07 0.00 2.77
74 75 0.035176 CCCTTTACGACCGTCCCAAA 59.965 55.000 0.00 0.00 0.00 3.28
75 76 1.120795 ACCCTTTACGACCGTCCCAA 61.121 55.000 0.00 0.00 0.00 4.12
76 77 1.533753 ACCCTTTACGACCGTCCCA 60.534 57.895 0.00 0.00 0.00 4.37
79 80 1.153958 CGGACCCTTTACGACCGTC 60.154 63.158 0.00 0.00 38.97 4.79
80 81 2.639327 CCGGACCCTTTACGACCGT 61.639 63.158 0.00 0.00 41.67 4.83
83 84 0.033920 ACAACCGGACCCTTTACGAC 59.966 55.000 9.46 0.00 0.00 4.34
84 85 1.626686 TACAACCGGACCCTTTACGA 58.373 50.000 9.46 0.00 0.00 3.43
85 86 2.453983 TTACAACCGGACCCTTTACG 57.546 50.000 9.46 0.00 0.00 3.18
88 89 4.287845 AGAGTATTTACAACCGGACCCTTT 59.712 41.667 9.46 0.00 0.00 3.11
89 90 3.842436 AGAGTATTTACAACCGGACCCTT 59.158 43.478 9.46 0.00 0.00 3.95
91 92 3.900966 AGAGTATTTACAACCGGACCC 57.099 47.619 9.46 0.00 0.00 4.46
92 93 6.165577 TGTTAAGAGTATTTACAACCGGACC 58.834 40.000 9.46 0.00 0.00 4.46
104 105 8.993121 CCGATCAGCAAATATGTTAAGAGTATT 58.007 33.333 0.00 0.00 0.00 1.89
106 107 6.423905 GCCGATCAGCAAATATGTTAAGAGTA 59.576 38.462 0.00 0.00 0.00 2.59
107 108 5.237344 GCCGATCAGCAAATATGTTAAGAGT 59.763 40.000 0.00 0.00 0.00 3.24
108 109 5.334414 GGCCGATCAGCAAATATGTTAAGAG 60.334 44.000 2.82 0.00 0.00 2.85
109 110 4.515191 GGCCGATCAGCAAATATGTTAAGA 59.485 41.667 2.82 0.00 0.00 2.10
110 111 4.320494 GGGCCGATCAGCAAATATGTTAAG 60.320 45.833 2.82 0.00 0.00 1.85
111 112 3.568007 GGGCCGATCAGCAAATATGTTAA 59.432 43.478 2.82 0.00 0.00 2.01
112 113 3.146066 GGGCCGATCAGCAAATATGTTA 58.854 45.455 2.82 0.00 0.00 2.41
113 114 1.956477 GGGCCGATCAGCAAATATGTT 59.044 47.619 2.82 0.00 0.00 2.71
114 115 1.133823 TGGGCCGATCAGCAAATATGT 60.134 47.619 2.82 0.00 0.00 2.29
116 117 1.956477 GTTGGGCCGATCAGCAAATAT 59.044 47.619 2.82 0.00 0.00 1.28
117 118 1.340502 TGTTGGGCCGATCAGCAAATA 60.341 47.619 2.82 0.00 0.00 1.40
118 119 0.611618 TGTTGGGCCGATCAGCAAAT 60.612 50.000 2.82 0.00 0.00 2.32
119 120 1.228398 TGTTGGGCCGATCAGCAAA 60.228 52.632 2.82 0.00 0.00 3.68
120 121 1.971167 GTGTTGGGCCGATCAGCAA 60.971 57.895 2.82 0.00 0.00 3.91
121 122 2.359850 GTGTTGGGCCGATCAGCA 60.360 61.111 2.82 0.00 0.00 4.41
122 123 1.244019 AAAGTGTTGGGCCGATCAGC 61.244 55.000 0.00 0.00 0.00 4.26
124 125 2.639970 CAAAGTGTTGGGCCGATCA 58.360 52.632 0.00 0.00 0.00 2.92
170 171 0.756903 ACCACCGGCATACTGGATAC 59.243 55.000 14.59 0.00 46.41 2.24
172 173 1.271840 ACACCACCGGCATACTGGAT 61.272 55.000 14.59 0.06 46.41 3.41
173 174 1.485294 AACACCACCGGCATACTGGA 61.485 55.000 14.59 0.00 46.41 3.86
176 177 0.036388 CTCAACACCACCGGCATACT 60.036 55.000 0.00 0.00 0.00 2.12
178 179 0.908910 ATCTCAACACCACCGGCATA 59.091 50.000 0.00 0.00 0.00 3.14
179 180 0.908910 TATCTCAACACCACCGGCAT 59.091 50.000 0.00 0.00 0.00 4.40
180 181 0.036765 GTATCTCAACACCACCGGCA 60.037 55.000 0.00 0.00 0.00 5.69
181 182 0.249398 AGTATCTCAACACCACCGGC 59.751 55.000 0.00 0.00 0.00 6.13
182 183 3.880047 TTAGTATCTCAACACCACCGG 57.120 47.619 0.00 0.00 0.00 5.28
185 186 5.648092 AGGCAATTTAGTATCTCAACACCAC 59.352 40.000 0.00 0.00 0.00 4.16
186 187 5.815581 AGGCAATTTAGTATCTCAACACCA 58.184 37.500 0.00 0.00 0.00 4.17
222 223 8.572185 TCTTATCCTGAAATCTAGAATCACTCG 58.428 37.037 0.00 0.00 0.00 4.18
327 598 6.657875 TGTAGATGAGATGACTCTGAAGAGA 58.342 40.000 14.20 0.00 44.74 3.10
337 608 7.768120 ACTCCTTCAAAATGTAGATGAGATGAC 59.232 37.037 0.00 0.00 0.00 3.06
339 610 8.503458 AACTCCTTCAAAATGTAGATGAGATG 57.497 34.615 0.00 0.00 0.00 2.90
340 611 9.606631 GTAACTCCTTCAAAATGTAGATGAGAT 57.393 33.333 0.00 0.00 0.00 2.75
341 612 8.041323 GGTAACTCCTTCAAAATGTAGATGAGA 58.959 37.037 0.00 0.00 0.00 3.27
362 633 9.250624 GAACAATATGATCTCACACTAGGTAAC 57.749 37.037 0.00 0.00 0.00 2.50
465 741 3.494332 AGAAGCTCTTTGGCACTTGAAT 58.506 40.909 0.00 0.00 34.17 2.57
514 790 1.404843 TGCCCCAAAACAGTAACCAC 58.595 50.000 0.00 0.00 0.00 4.16
522 798 0.692419 ACCACCATTGCCCCAAAACA 60.692 50.000 0.00 0.00 0.00 2.83
527 803 0.471617 CAAAAACCACCATTGCCCCA 59.528 50.000 0.00 0.00 0.00 4.96
528 804 0.250684 CCAAAAACCACCATTGCCCC 60.251 55.000 0.00 0.00 0.00 5.80
529 805 0.250684 CCCAAAAACCACCATTGCCC 60.251 55.000 0.00 0.00 0.00 5.36
531 807 0.108396 AGCCCAAAAACCACCATTGC 59.892 50.000 0.00 0.00 0.00 3.56
543 835 2.224329 ACATGTACGTACACAGCCCAAA 60.224 45.455 29.54 4.79 39.30 3.28
577 869 2.058001 ACATCATCCCCGAGACGCA 61.058 57.895 0.00 0.00 0.00 5.24
579 871 1.068083 CCACATCATCCCCGAGACG 59.932 63.158 0.00 0.00 0.00 4.18
581 873 0.541392 CAACCACATCATCCCCGAGA 59.459 55.000 0.00 0.00 0.00 4.04
583 875 1.607071 CCAACCACATCATCCCCGA 59.393 57.895 0.00 0.00 0.00 5.14
584 876 2.120909 GCCAACCACATCATCCCCG 61.121 63.158 0.00 0.00 0.00 5.73
585 877 1.039233 CAGCCAACCACATCATCCCC 61.039 60.000 0.00 0.00 0.00 4.81
586 878 0.323725 ACAGCCAACCACATCATCCC 60.324 55.000 0.00 0.00 0.00 3.85
587 879 1.098050 GACAGCCAACCACATCATCC 58.902 55.000 0.00 0.00 0.00 3.51
589 881 0.677731 CCGACAGCCAACCACATCAT 60.678 55.000 0.00 0.00 0.00 2.45
591 883 0.392998 ATCCGACAGCCAACCACATC 60.393 55.000 0.00 0.00 0.00 3.06
592 884 0.908910 TATCCGACAGCCAACCACAT 59.091 50.000 0.00 0.00 0.00 3.21
593 885 0.908910 ATATCCGACAGCCAACCACA 59.091 50.000 0.00 0.00 0.00 4.17
634 1123 2.490991 GGTACAGCGAAAGTGGTTCTT 58.509 47.619 0.00 0.00 38.10 2.52
636 1125 1.154197 GGGTACAGCGAAAGTGGTTC 58.846 55.000 0.00 0.00 0.00 3.62
738 2731 1.069838 CGATCTGTACGATCCACGGAG 60.070 57.143 16.68 4.14 44.66 4.63
784 2816 0.656785 GTGTTTGGTGCCGACGTTTA 59.343 50.000 0.00 0.00 0.00 2.01
791 2823 0.534203 AGTAGTGGTGTTTGGTGCCG 60.534 55.000 0.00 0.00 0.00 5.69
834 2866 1.802337 CTTGGCATGTGCAGTGTGCT 61.802 55.000 15.05 0.00 45.31 4.40
932 2964 0.793250 GACACTCGCCTTTCAAGAGC 59.207 55.000 0.00 0.00 35.56 4.09
933 2965 1.063806 CGACACTCGCCTTTCAAGAG 58.936 55.000 0.00 0.00 37.96 2.85
949 2981 1.216941 TTTTCTGCGAACCGACCGAC 61.217 55.000 0.00 0.00 0.00 4.79
950 2982 0.320073 ATTTTCTGCGAACCGACCGA 60.320 50.000 0.00 0.00 0.00 4.69
951 2983 0.094730 GATTTTCTGCGAACCGACCG 59.905 55.000 0.00 0.00 0.00 4.79
952 2984 0.094730 CGATTTTCTGCGAACCGACC 59.905 55.000 0.00 0.00 0.00 4.79
1483 3519 2.401195 GTTGAAGATGAGCGCGGC 59.599 61.111 8.83 0.00 0.00 6.53
1530 3566 2.332654 GCATCCGAAGTGGCCGTTT 61.333 57.895 0.00 0.00 37.80 3.60
1566 3620 4.549599 CGTTGAATTGAAACGTGAGCATAC 59.450 41.667 12.62 0.00 44.07 2.39
1591 3645 0.947244 CCATGGCAGACTATTTCGCC 59.053 55.000 0.00 0.00 41.56 5.54
1652 3806 1.211969 CGTGATCGTGTCCTTCCGT 59.788 57.895 0.00 0.00 0.00 4.69
2628 6485 9.702726 CCAAGTTTCGTGAACAATTATACATAG 57.297 33.333 7.07 0.00 40.84 2.23
2654 6511 0.098728 GCATTGTATGTGGGCACGTC 59.901 55.000 0.00 0.00 0.00 4.34
2665 6522 1.600957 GCGCACATCTCAGCATTGTAT 59.399 47.619 0.30 0.00 0.00 2.29
2667 6524 1.798735 GCGCACATCTCAGCATTGT 59.201 52.632 0.30 0.00 0.00 2.71
2669 6526 1.300971 AACGCGCACATCTCAGCATT 61.301 50.000 5.73 0.00 0.00 3.56
2673 6530 3.389687 AATTTAACGCGCACATCTCAG 57.610 42.857 5.73 0.00 0.00 3.35
2753 10405 6.353323 TCGGAAATTCACTTTAGCATATGGA 58.647 36.000 4.56 0.00 0.00 3.41
2758 10410 4.396166 CCACTCGGAAATTCACTTTAGCAT 59.604 41.667 0.00 0.00 0.00 3.79
2762 10414 2.739913 CGCCACTCGGAAATTCACTTTA 59.260 45.455 0.00 0.00 33.78 1.85
2778 10430 1.664333 CCATGTGCCAAAACGCCAC 60.664 57.895 0.00 0.00 0.00 5.01
2850 10502 8.296000 TGCGAGAATCATTTTGTCAGAATTTTA 58.704 29.630 0.00 0.00 33.17 1.52
2894 10546 4.346970 CACGAAACAAGTTTGTATGCACA 58.653 39.130 2.45 0.00 41.31 4.57
2908 10560 1.735386 TGTCGGTTTTCCACGAAACA 58.265 45.000 0.00 0.00 41.17 2.83
2913 10565 2.836479 AAAGTTGTCGGTTTTCCACG 57.164 45.000 0.00 0.00 40.70 4.94
2926 10578 8.034215 TCCCTTTTGCATATGACATAAAAGTTG 58.966 33.333 20.73 15.66 36.90 3.16
2933 10586 7.473735 TTTTGTCCCTTTTGCATATGACATA 57.526 32.000 6.97 0.00 33.25 2.29
3008 10661 9.900710 AAAAACAGACATTTTATACGCATTGTA 57.099 25.926 0.00 0.00 32.24 2.41
3009 10662 8.810652 AAAAACAGACATTTTATACGCATTGT 57.189 26.923 0.00 0.00 31.50 2.71
3010 10663 8.910666 TGAAAAACAGACATTTTATACGCATTG 58.089 29.630 0.00 0.00 31.50 2.82
3012 10665 9.075519 CATGAAAAACAGACATTTTATACGCAT 57.924 29.630 0.00 0.00 31.50 4.73
3013 10666 8.293157 TCATGAAAAACAGACATTTTATACGCA 58.707 29.630 0.00 0.00 31.50 5.24
3014 10667 8.667987 TCATGAAAAACAGACATTTTATACGC 57.332 30.769 0.00 0.00 31.50 4.42
3028 10681 3.862267 CACGCCAAGTTTCATGAAAAACA 59.138 39.130 22.07 0.00 40.77 2.83
3063 10718 0.804364 TTTGGCGTGCACATCTCATC 59.196 50.000 18.64 0.00 0.00 2.92
3075 10730 1.025812 TCCGAACACAAATTTGGCGT 58.974 45.000 21.74 15.03 33.58 5.68
3117 10772 5.334414 GCTCCTGCCATCGAAAAATATACTG 60.334 44.000 0.00 0.00 0.00 2.74
3118 10773 4.757149 GCTCCTGCCATCGAAAAATATACT 59.243 41.667 0.00 0.00 0.00 2.12
3119 10774 4.515191 TGCTCCTGCCATCGAAAAATATAC 59.485 41.667 0.00 0.00 38.71 1.47
3120 10775 4.713553 TGCTCCTGCCATCGAAAAATATA 58.286 39.130 0.00 0.00 38.71 0.86
3121 10776 3.554934 TGCTCCTGCCATCGAAAAATAT 58.445 40.909 0.00 0.00 38.71 1.28
3183 10838 8.897752 TCCTGGGTTTTAAACAATTTTGAAATG 58.102 29.630 10.14 0.00 33.98 2.32
3188 10843 5.819901 TGCTCCTGGGTTTTAAACAATTTTG 59.180 36.000 10.14 0.00 0.00 2.44
3189 10844 5.995446 TGCTCCTGGGTTTTAAACAATTTT 58.005 33.333 10.14 0.00 0.00 1.82
3193 10848 5.337169 GCATATGCTCCTGGGTTTTAAACAA 60.337 40.000 20.64 0.00 38.21 2.83
3195 10850 4.682787 GCATATGCTCCTGGGTTTTAAAC 58.317 43.478 20.64 0.00 38.21 2.01
3234 10903 4.212214 CACAAAGTACAAAGAGAGAGTGGC 59.788 45.833 0.00 0.00 0.00 5.01
3240 10909 4.876107 ACACACCACAAAGTACAAAGAGAG 59.124 41.667 0.00 0.00 0.00 3.20
3241 10910 4.839121 ACACACCACAAAGTACAAAGAGA 58.161 39.130 0.00 0.00 0.00 3.10
3242 10911 6.861065 ATACACACCACAAAGTACAAAGAG 57.139 37.500 0.00 0.00 0.00 2.85
3243 10912 6.600032 ACAATACACACCACAAAGTACAAAGA 59.400 34.615 0.00 0.00 0.00 2.52
3244 10913 6.690957 CACAATACACACCACAAAGTACAAAG 59.309 38.462 0.00 0.00 0.00 2.77
3245 10914 6.151312 ACACAATACACACCACAAAGTACAAA 59.849 34.615 0.00 0.00 0.00 2.83
3246 10915 5.648526 ACACAATACACACCACAAAGTACAA 59.351 36.000 0.00 0.00 0.00 2.41
3247 10916 5.186942 ACACAATACACACCACAAAGTACA 58.813 37.500 0.00 0.00 0.00 2.90
3248 10917 5.744666 ACACAATACACACCACAAAGTAC 57.255 39.130 0.00 0.00 0.00 2.73
3249 10918 6.584488 ACTACACAATACACACCACAAAGTA 58.416 36.000 0.00 0.00 0.00 2.24
3250 10919 5.433526 ACTACACAATACACACCACAAAGT 58.566 37.500 0.00 0.00 0.00 2.66
3356 11360 1.823169 GAGGGCGTGTGTGGGTCTAA 61.823 60.000 0.00 0.00 0.00 2.10
3361 11365 0.828022 TTATAGAGGGCGTGTGTGGG 59.172 55.000 0.00 0.00 0.00 4.61
3365 11369 1.135199 ACGTGTTATAGAGGGCGTGTG 60.135 52.381 0.00 0.00 0.00 3.82
3370 11374 5.233689 GTGTTGATAACGTGTTATAGAGGGC 59.766 44.000 5.29 0.00 36.02 5.19
3395 11399 1.634702 GTGACGGTCTTGAGAGCATC 58.365 55.000 9.88 5.31 42.28 3.91
3405 11409 0.033504 ATTGCACTTCGTGACGGTCT 59.966 50.000 4.70 0.00 35.23 3.85
3406 11410 0.865769 AATTGCACTTCGTGACGGTC 59.134 50.000 4.70 0.00 35.23 4.79
3414 11730 6.545508 TCTTTGATGATGTAATTGCACTTCG 58.454 36.000 0.00 0.00 0.00 3.79
3526 11842 2.569853 TGGAGTAATATGTATGCCCCCG 59.430 50.000 0.00 0.00 0.00 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.