Multiple sequence alignment - TraesCS7D01G413000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G413000 chr7D 100.000 2808 0 0 1 2808 531552789 531555596 0.000000e+00 5186.0
1 TraesCS7D01G413000 chr7D 100.000 2196 0 0 3129 5324 531555917 531558112 0.000000e+00 4056.0
2 TraesCS7D01G413000 chr7D 89.655 58 3 2 2046 2103 69414599 69414653 2.660000e-08 71.3
3 TraesCS7D01G413000 chr7D 97.297 37 1 0 2062 2098 93996922 93996886 4.450000e-06 63.9
4 TraesCS7D01G413000 chr7A 90.958 1493 116 12 3241 4727 611797287 611798766 0.000000e+00 1991.0
5 TraesCS7D01G413000 chr7A 89.210 1279 115 14 3253 4521 611972104 611973369 0.000000e+00 1576.0
6 TraesCS7D01G413000 chr7A 86.926 1262 119 29 3 1239 611775753 611776993 0.000000e+00 1375.0
7 TraesCS7D01G413000 chr7A 85.513 1208 114 33 889 2060 611969413 611970595 0.000000e+00 1205.0
8 TraesCS7D01G413000 chr7A 87.231 603 63 10 4733 5324 611798829 611799428 0.000000e+00 675.0
9 TraesCS7D01G413000 chr7A 82.439 820 96 23 4517 5322 611975390 611976175 0.000000e+00 673.0
10 TraesCS7D01G413000 chr7A 80.556 648 74 20 2187 2800 611971078 611971707 8.130000e-123 451.0
11 TraesCS7D01G413000 chr7A 87.228 368 28 9 1704 2059 611794920 611795280 8.310000e-108 401.0
12 TraesCS7D01G413000 chr7A 87.062 371 25 4 2187 2555 611796066 611796415 1.070000e-106 398.0
13 TraesCS7D01G413000 chr7A 92.593 54 1 3 2059 2111 381694636 381694585 2.060000e-09 75.0
14 TraesCS7D01G413000 chr7A 77.885 104 13 5 461 558 681379078 681379177 7.450000e-04 56.5
15 TraesCS7D01G413000 chr2D 89.583 192 20 0 1052 1243 419783593 419783402 1.480000e-60 244.0
16 TraesCS7D01G413000 chr2D 97.619 42 0 1 2059 2100 326408183 326408223 2.660000e-08 71.3
17 TraesCS7D01G413000 chr2A 89.583 192 20 0 1052 1243 570192964 570193155 1.480000e-60 244.0
18 TraesCS7D01G413000 chr2B 89.062 192 21 0 1052 1243 492148247 492148056 6.890000e-59 239.0
19 TraesCS7D01G413000 chr4D 97.826 46 0 1 2058 2103 442889156 442889200 1.590000e-10 78.7
20 TraesCS7D01G413000 chr3B 97.436 39 0 1 2065 2103 30434058 30434095 1.240000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G413000 chr7D 531552789 531558112 5323 False 4621.00 5186 100.00000 1 5324 2 chr7D.!!$F2 5323
1 TraesCS7D01G413000 chr7A 611775753 611776993 1240 False 1375.00 1375 86.92600 3 1239 1 chr7A.!!$F1 1236
2 TraesCS7D01G413000 chr7A 611969413 611976175 6762 False 976.25 1576 84.42950 889 5322 4 chr7A.!!$F4 4433
3 TraesCS7D01G413000 chr7A 611794920 611799428 4508 False 866.25 1991 88.11975 1704 5324 4 chr7A.!!$F3 3620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.039035 TTATTCAGCCCACACCCCAC 59.961 55.000 0.00 0.00 0.00 4.61 F
985 1009 0.678048 GCCAGCCCTTTCACTACCTG 60.678 60.000 0.00 0.00 0.00 4.00 F
1567 1612 0.593128 ACTAGTAACCGCGTGTCGTT 59.407 50.000 4.92 4.37 36.19 3.85 F
2161 2223 1.547372 AGCCACACATGCATTTTCTCC 59.453 47.619 0.00 0.00 0.00 3.71 F
3207 4121 0.259938 ATGTTCATCCTGGGGGAAGC 59.740 55.000 0.00 0.00 45.78 3.86 F
3233 4281 0.108615 GCTACCATATCGCCTCGCAT 60.109 55.000 0.00 0.00 0.00 4.73 F
3901 5119 0.326595 TGATGGGCTTGCGTAGGAAA 59.673 50.000 0.00 0.00 37.43 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1042 1066 0.251354 TCCTTGTGGCTGCTGATCTC 59.749 55.0 0.00 0.00 0.00 2.75 R
2387 3210 0.315251 GCTCCCACAACAAAAGCCTC 59.685 55.0 0.00 0.00 0.00 4.70 R
3205 4119 0.036010 GATATGGTAGCATGCCCGCT 60.036 55.0 15.66 3.74 41.90 5.52 R
3212 4126 0.108615 GCGAGGCGATATGGTAGCAT 60.109 55.0 12.78 12.78 0.00 3.79 R
4038 5260 0.395862 TAGGGTCTGGCTTCTCGAGG 60.396 60.0 13.56 0.00 0.00 4.63 R
4051 5274 0.978146 TGCAGGGCTCTTCTAGGGTC 60.978 60.0 0.00 0.00 0.00 4.46 R
5300 8622 0.185175 ACACCCCAAGAAGTGAACCC 59.815 55.0 0.00 0.00 37.43 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 2.223852 TGACAAATGTTCCGTCGACTCA 60.224 45.455 14.70 7.89 32.17 3.41
60 61 4.232221 TGTTCCGTCGACTCACTTTATTC 58.768 43.478 14.70 0.00 0.00 1.75
67 68 2.673368 CGACTCACTTTATTCAGCCCAC 59.327 50.000 0.00 0.00 0.00 4.61
68 69 3.674997 GACTCACTTTATTCAGCCCACA 58.325 45.455 0.00 0.00 0.00 4.17
74 75 0.039035 TTATTCAGCCCACACCCCAC 59.961 55.000 0.00 0.00 0.00 4.61
98 99 7.332430 CACGCCGATAAACCTATGGATAATTAA 59.668 37.037 0.00 0.00 0.00 1.40
124 125 7.352079 AGGTTATGGATGAAAATGCCTTTAG 57.648 36.000 0.00 0.00 0.00 1.85
137 138 9.476202 GAAAATGCCTTTAGTAGTGAACATTTT 57.524 29.630 12.41 12.41 44.61 1.82
148 149 7.791029 AGTAGTGAACATTTTCCATTGGTTTT 58.209 30.769 1.86 0.00 0.00 2.43
149 150 7.926018 AGTAGTGAACATTTTCCATTGGTTTTC 59.074 33.333 1.86 0.00 0.00 2.29
152 153 7.609532 AGTGAACATTTTCCATTGGTTTTCAAA 59.390 29.630 1.86 0.00 39.05 2.69
167 168 6.002062 GTTTTCAAACCTGATCGTGATCTT 57.998 37.500 10.91 0.00 34.66 2.40
168 169 5.862924 TTTCAAACCTGATCGTGATCTTC 57.137 39.130 10.91 0.00 38.60 2.87
178 179 5.723295 TGATCGTGATCTTCATGAGACAAA 58.277 37.500 10.91 0.00 44.64 2.83
189 190 4.926860 CATGAGACAAACTCGCATGTAA 57.073 40.909 6.04 0.00 46.65 2.41
190 191 4.890378 CATGAGACAAACTCGCATGTAAG 58.110 43.478 6.04 0.00 46.65 2.34
206 209 5.755375 GCATGTAAGAGCTAGCATGAGTAAA 59.245 40.000 18.83 0.00 40.61 2.01
218 221 7.148340 GCTAGCATGAGTAAATCTTGTGTCTTT 60.148 37.037 10.63 0.00 35.88 2.52
243 246 5.594317 GGCCATAATTAACCATGAGTCAACT 59.406 40.000 0.00 0.00 0.00 3.16
246 249 8.682710 GCCATAATTAACCATGAGTCAACTAAA 58.317 33.333 0.00 0.00 0.00 1.85
275 278 3.275617 TTGTGTAAGTTGGCTCACTGT 57.724 42.857 0.00 0.00 0.00 3.55
278 281 2.544267 GTGTAAGTTGGCTCACTGTGTC 59.456 50.000 7.79 1.26 0.00 3.67
290 293 4.836825 CTCACTGTGTCTGACCCATAATT 58.163 43.478 7.79 0.00 0.00 1.40
309 312 5.500645 AATTCGGCTAGCTTTAAACATCC 57.499 39.130 15.72 0.00 0.00 3.51
310 313 2.546778 TCGGCTAGCTTTAAACATCCG 58.453 47.619 15.72 5.52 37.21 4.18
313 316 1.333931 GCTAGCTTTAAACATCCGCCC 59.666 52.381 7.70 0.00 0.00 6.13
320 323 0.748450 TAAACATCCGCCCCTCGTAG 59.252 55.000 0.00 0.00 36.19 3.51
339 342 6.707711 TCGTAGTGTTTGTAACATGTTTGAC 58.292 36.000 17.78 10.45 44.35 3.18
375 378 9.793259 GGTTGAGGGATATTGATATGAAGTTTA 57.207 33.333 0.00 0.00 0.00 2.01
459 462 3.173965 AGGTCTTTGTTGCTAGGAGCTA 58.826 45.455 0.00 0.00 42.97 3.32
480 483 7.073854 AGCTAGAAAATACCCTGATACACCTA 58.926 38.462 0.00 0.00 0.00 3.08
497 500 2.585900 ACCTAGGTGTAGATGGACCTGA 59.414 50.000 15.42 0.00 42.80 3.86
533 537 6.620678 TGAGAATTAGCAATTCCGGAAAAAG 58.379 36.000 23.08 14.73 46.65 2.27
579 583 8.472683 TTTCTAATAAATTTGACCAATTGGCG 57.527 30.769 24.79 1.96 35.09 5.69
590 594 2.997986 ACCAATTGGCGTACTCGTTTAG 59.002 45.455 24.79 0.00 39.32 1.85
594 598 4.916099 ATTGGCGTACTCGTTTAGAAAC 57.084 40.909 0.00 0.00 39.49 2.78
605 609 6.038356 ACTCGTTTAGAAACTTCGACAAAGA 58.962 36.000 3.80 0.00 38.44 2.52
612 616 9.550811 TTTAGAAACTTCGACAAAGAAAAACTC 57.449 29.630 0.00 0.00 38.44 3.01
659 663 7.839680 AAACAAAATTCCAGGACAATAGAGT 57.160 32.000 0.00 0.00 0.00 3.24
661 665 6.542821 ACAAAATTCCAGGACAATAGAGTGA 58.457 36.000 0.00 0.00 0.00 3.41
662 666 7.004086 ACAAAATTCCAGGACAATAGAGTGAA 58.996 34.615 0.00 0.00 0.00 3.18
663 667 7.671398 ACAAAATTCCAGGACAATAGAGTGAAT 59.329 33.333 0.00 0.00 0.00 2.57
665 669 8.970859 AAATTCCAGGACAATAGAGTGAATAG 57.029 34.615 0.00 0.00 0.00 1.73
666 670 7.682787 ATTCCAGGACAATAGAGTGAATAGT 57.317 36.000 0.00 0.00 0.00 2.12
667 671 8.783660 ATTCCAGGACAATAGAGTGAATAGTA 57.216 34.615 0.00 0.00 0.00 1.82
669 673 8.008513 TCCAGGACAATAGAGTGAATAGTAAC 57.991 38.462 0.00 0.00 0.00 2.50
671 675 7.707035 CCAGGACAATAGAGTGAATAGTAACAC 59.293 40.741 0.00 0.00 37.30 3.32
672 676 8.251026 CAGGACAATAGAGTGAATAGTAACACA 58.749 37.037 11.54 0.00 39.18 3.72
673 677 8.982723 AGGACAATAGAGTGAATAGTAACACAT 58.017 33.333 11.54 4.67 39.18 3.21
674 678 9.601217 GGACAATAGAGTGAATAGTAACACATT 57.399 33.333 11.54 3.06 39.18 2.71
723 727 2.529136 TTTTCGTCAACAACACCACG 57.471 45.000 0.00 0.00 0.00 4.94
771 776 1.136690 CGAGTGTAACGCTTGAGCAA 58.863 50.000 3.65 0.00 45.86 3.91
772 777 1.525197 CGAGTGTAACGCTTGAGCAAA 59.475 47.619 3.65 0.00 45.86 3.68
774 779 3.482786 GAGTGTAACGCTTGAGCAAATG 58.517 45.455 3.65 0.00 45.86 2.32
775 780 2.878406 AGTGTAACGCTTGAGCAAATGT 59.122 40.909 3.65 0.00 45.86 2.71
776 781 2.973224 GTGTAACGCTTGAGCAAATGTG 59.027 45.455 3.65 0.00 42.21 3.21
777 782 2.616376 TGTAACGCTTGAGCAAATGTGT 59.384 40.909 3.65 0.00 42.21 3.72
778 783 2.869233 AACGCTTGAGCAAATGTGTT 57.131 40.000 3.65 0.00 42.21 3.32
779 784 2.124011 ACGCTTGAGCAAATGTGTTG 57.876 45.000 3.65 0.00 42.21 3.33
780 785 1.405105 ACGCTTGAGCAAATGTGTTGT 59.595 42.857 3.65 0.00 42.21 3.32
781 786 2.616376 ACGCTTGAGCAAATGTGTTGTA 59.384 40.909 3.65 0.00 42.21 2.41
782 787 3.066064 ACGCTTGAGCAAATGTGTTGTAA 59.934 39.130 3.65 0.00 42.21 2.41
783 788 4.041049 CGCTTGAGCAAATGTGTTGTAAA 58.959 39.130 3.65 0.00 42.21 2.01
784 789 4.502282 CGCTTGAGCAAATGTGTTGTAAAA 59.498 37.500 3.65 0.00 42.21 1.52
785 790 5.005203 CGCTTGAGCAAATGTGTTGTAAAAA 59.995 36.000 3.65 0.00 42.21 1.94
810 815 9.881529 AAAAATCATGATTTTCGACCATTTTTG 57.118 25.926 34.99 0.00 46.76 2.44
818 823 9.967346 TGATTTTCGACCATTTTTGTAATTACA 57.033 25.926 14.35 14.35 0.00 2.41
950 964 1.856265 CGACAAACCAGAAGCCCTGC 61.856 60.000 0.00 0.00 41.57 4.85
956 970 2.281761 CAGAAGCCCTGCAACCGT 60.282 61.111 0.00 0.00 35.89 4.83
985 1009 0.678048 GCCAGCCCTTTCACTACCTG 60.678 60.000 0.00 0.00 0.00 4.00
1006 1030 2.229543 GCAGCAATCAAGACAATGGACA 59.770 45.455 0.00 0.00 0.00 4.02
1008 1032 3.504906 CAGCAATCAAGACAATGGACAGT 59.495 43.478 0.00 0.00 0.00 3.55
1010 1034 3.254166 GCAATCAAGACAATGGACAGTGT 59.746 43.478 4.97 4.97 42.81 3.55
1011 1035 4.261741 GCAATCAAGACAATGGACAGTGTT 60.262 41.667 6.85 0.00 39.96 3.32
1012 1036 5.217393 CAATCAAGACAATGGACAGTGTTG 58.783 41.667 6.85 2.93 39.96 3.33
1014 1038 2.951642 CAAGACAATGGACAGTGTTGGT 59.048 45.455 6.85 0.00 39.96 3.67
1042 1066 1.817099 GAGCAGCCGATGTTGGAGG 60.817 63.158 0.00 0.00 0.00 4.30
1080 1110 2.264480 CATCACTTCACGGCCGGA 59.736 61.111 31.76 20.83 0.00 5.14
1266 1301 6.870971 TCACTGGTTCTTTTACACCATAAC 57.129 37.500 0.00 0.00 42.35 1.89
1277 1312 9.337396 TCTTTTACACCATAACATATCATCCAC 57.663 33.333 0.00 0.00 0.00 4.02
1281 1316 9.719355 TTACACCATAACATATCATCCACATAC 57.281 33.333 0.00 0.00 0.00 2.39
1284 1319 7.879677 CACCATAACATATCATCCACATACACT 59.120 37.037 0.00 0.00 0.00 3.55
1285 1320 7.879677 ACCATAACATATCATCCACATACACTG 59.120 37.037 0.00 0.00 0.00 3.66
1306 1341 3.104843 CTAGTTTGCAGGCTAGCCTAG 57.895 52.381 35.50 27.53 46.28 3.02
1307 1342 1.280457 AGTTTGCAGGCTAGCCTAGT 58.720 50.000 35.50 20.04 46.28 2.57
1319 1354 5.829391 AGGCTAGCCTAGTTAGTTACTTCTC 59.171 44.000 35.28 0.23 46.14 2.87
1320 1355 5.277925 GGCTAGCCTAGTTAGTTACTTCTCG 60.278 48.000 27.17 0.00 38.33 4.04
1325 1360 5.221087 GCCTAGTTAGTTACTTCTCGCTGAT 60.221 44.000 0.00 0.00 38.33 2.90
1336 1371 0.859374 CTCGCTGATGAGTGACGACG 60.859 60.000 0.00 0.00 34.88 5.12
1342 1377 2.205911 TGATGAGTGACGACGCAAAAA 58.794 42.857 0.62 0.00 35.34 1.94
1345 1380 3.684103 TGAGTGACGACGCAAAAATTT 57.316 38.095 0.62 0.00 0.00 1.82
1346 1381 4.022464 TGAGTGACGACGCAAAAATTTT 57.978 36.364 0.00 0.00 0.00 1.82
1352 1387 6.681178 AGTGACGACGCAAAAATTTTATATCG 59.319 34.615 17.92 17.92 0.00 2.92
1353 1388 6.463576 GTGACGACGCAAAAATTTTATATCGT 59.536 34.615 22.05 22.05 42.46 3.73
1375 1411 9.892130 ATCGTATCTTTAGGAGAAAAGAACATT 57.108 29.630 3.40 0.00 45.83 2.71
1376 1412 9.367444 TCGTATCTTTAGGAGAAAAGAACATTC 57.633 33.333 3.40 0.00 45.83 2.67
1377 1413 9.151471 CGTATCTTTAGGAGAAAAGAACATTCA 57.849 33.333 3.40 0.00 45.83 2.57
1386 1422 8.743714 AGGAGAAAAGAACATTCATATTTCACC 58.256 33.333 16.82 16.82 37.43 4.02
1387 1423 8.522830 GGAGAAAAGAACATTCATATTTCACCA 58.477 33.333 18.20 0.00 37.30 4.17
1392 1430 8.862325 AAGAACATTCATATTTCACCAGTACA 57.138 30.769 0.00 0.00 0.00 2.90
1401 1439 3.660501 TTCACCAGTACACAGTAGCTG 57.339 47.619 0.00 0.00 37.52 4.24
1407 1445 6.831868 TCACCAGTACACAGTAGCTGAATATA 59.168 38.462 0.00 0.00 35.18 0.86
1408 1446 6.918569 CACCAGTACACAGTAGCTGAATATAC 59.081 42.308 0.00 0.00 35.18 1.47
1409 1447 6.605995 ACCAGTACACAGTAGCTGAATATACA 59.394 38.462 0.00 0.00 35.18 2.29
1436 1474 6.258160 ACACATCATTATTGAAACGCTTAGC 58.742 36.000 0.00 0.00 34.96 3.09
1455 1493 4.048241 AGCTTGATCGTAGCTCTTAACC 57.952 45.455 14.49 0.00 45.52 2.85
1460 1498 6.647067 GCTTGATCGTAGCTCTTAACCATAAT 59.353 38.462 11.28 0.00 35.74 1.28
1461 1499 7.359598 GCTTGATCGTAGCTCTTAACCATAATG 60.360 40.741 11.28 0.00 35.74 1.90
1463 1501 6.923508 TGATCGTAGCTCTTAACCATAATGTG 59.076 38.462 0.00 0.00 0.00 3.21
1488 1526 9.196552 TGCATATAAGAGAAATATTGAGACACG 57.803 33.333 0.00 0.00 0.00 4.49
1559 1604 5.914085 TCTACGATTCTACTAGTAACCGC 57.086 43.478 3.76 0.00 0.00 5.68
1561 1606 2.939103 ACGATTCTACTAGTAACCGCGT 59.061 45.455 4.92 8.95 0.00 6.01
1562 1607 3.242543 ACGATTCTACTAGTAACCGCGTG 60.243 47.826 4.92 0.00 0.00 5.34
1564 1609 3.747099 TTCTACTAGTAACCGCGTGTC 57.253 47.619 4.92 0.00 0.00 3.67
1565 1610 1.660607 TCTACTAGTAACCGCGTGTCG 59.339 52.381 4.92 0.00 38.08 4.35
1566 1611 1.394917 CTACTAGTAACCGCGTGTCGT 59.605 52.381 4.92 0.00 36.19 4.34
1567 1612 0.593128 ACTAGTAACCGCGTGTCGTT 59.407 50.000 4.92 4.37 36.19 3.85
1568 1613 1.804151 ACTAGTAACCGCGTGTCGTTA 59.196 47.619 4.92 3.25 36.19 3.18
1569 1614 2.420022 ACTAGTAACCGCGTGTCGTTAT 59.580 45.455 4.92 0.29 36.19 1.89
1574 1619 3.644805 AACCGCGTGTCGTTATTATTG 57.355 42.857 4.92 0.00 36.19 1.90
1629 1674 6.359804 AGATGTGTAGATTGCATGTGGTTAT 58.640 36.000 0.00 0.00 0.00 1.89
1640 1685 8.651391 ATTGCATGTGGTTATTATTGACATTG 57.349 30.769 0.00 0.00 0.00 2.82
1800 1850 6.697641 ATAACAAACAGGAGTTAAGAGGGA 57.302 37.500 0.00 0.00 36.84 4.20
1802 1852 5.167303 ACAAACAGGAGTTAAGAGGGATC 57.833 43.478 0.00 0.00 36.84 3.36
1814 1865 3.268023 AGAGGGATCGTTTTGGCTTAG 57.732 47.619 0.00 0.00 0.00 2.18
1870 1921 3.786656 GGCTACATGTGCCTCATCA 57.213 52.632 23.79 0.00 46.38 3.07
1884 1935 7.337938 TGTGCCTCATCAGTTTTCTAATATGA 58.662 34.615 0.00 0.00 0.00 2.15
2016 2078 9.241317 GTCCTTGCATTGTCAATATTTTAGATG 57.759 33.333 0.00 0.00 0.00 2.90
2043 2105 5.551305 TGCTATGTCCACTATGCAGTATT 57.449 39.130 0.00 0.00 32.21 1.89
2071 2133 9.959721 AATACATATCATATACCGAAAAAGGCT 57.040 29.630 0.00 0.00 33.69 4.58
2074 2136 9.959721 ACATATCATATACCGAAAAAGGCTATT 57.040 29.630 0.00 0.00 33.69 1.73
2076 2138 7.596749 ATCATATACCGAAAAAGGCTATTCG 57.403 36.000 21.64 21.64 45.91 3.34
2077 2139 5.407387 TCATATACCGAAAAAGGCTATTCGC 59.593 40.000 22.64 0.00 45.20 4.70
2086 2148 4.449391 GCTATTCGCCCCGCTTTA 57.551 55.556 0.00 0.00 0.00 1.85
2087 2149 2.928416 GCTATTCGCCCCGCTTTAT 58.072 52.632 0.00 0.00 0.00 1.40
2088 2150 2.088950 GCTATTCGCCCCGCTTTATA 57.911 50.000 0.00 0.00 0.00 0.98
2089 2151 2.000447 GCTATTCGCCCCGCTTTATAG 59.000 52.381 0.00 0.00 0.00 1.31
2090 2152 2.353406 GCTATTCGCCCCGCTTTATAGA 60.353 50.000 0.00 0.00 0.00 1.98
2091 2153 3.679083 GCTATTCGCCCCGCTTTATAGAT 60.679 47.826 0.00 0.00 0.00 1.98
2092 2154 4.441079 GCTATTCGCCCCGCTTTATAGATA 60.441 45.833 0.00 0.00 0.00 1.98
2093 2155 4.546829 ATTCGCCCCGCTTTATAGATAA 57.453 40.909 0.00 0.00 0.00 1.75
2094 2156 4.339872 TTCGCCCCGCTTTATAGATAAA 57.660 40.909 0.00 0.00 0.00 1.40
2119 2181 6.596717 CAACGACTGCAAACATACAATTAC 57.403 37.500 0.00 0.00 0.00 1.89
2120 2182 5.933187 ACGACTGCAAACATACAATTACA 57.067 34.783 0.00 0.00 0.00 2.41
2121 2183 6.494893 ACGACTGCAAACATACAATTACAT 57.505 33.333 0.00 0.00 0.00 2.29
2161 2223 1.547372 AGCCACACATGCATTTTCTCC 59.453 47.619 0.00 0.00 0.00 3.71
2176 2238 6.623767 GCATTTTCTCCCACTCTCAATGTTAC 60.624 42.308 0.00 0.00 0.00 2.50
2189 2251 8.982685 ACTCTCAATGTTACGCATTAATATCTG 58.017 33.333 0.00 0.00 45.33 2.90
2190 2252 8.310406 TCTCAATGTTACGCATTAATATCTGG 57.690 34.615 0.00 0.00 45.33 3.86
2201 3021 4.875544 TTAATATCTGGCGCACACTTTC 57.124 40.909 10.83 0.00 0.00 2.62
2211 3031 3.402186 CACACTTTCCTGGTGCAGA 57.598 52.632 0.00 0.00 38.14 4.26
2278 3101 6.552350 CCATGATGGTTCTCTTATCCCATTTT 59.448 38.462 2.54 0.00 37.81 1.82
2279 3102 7.725397 CCATGATGGTTCTCTTATCCCATTTTA 59.275 37.037 2.54 0.00 37.81 1.52
2280 3103 8.790718 CATGATGGTTCTCTTATCCCATTTTAG 58.209 37.037 0.00 0.00 37.81 1.85
2281 3104 6.772716 TGATGGTTCTCTTATCCCATTTTAGC 59.227 38.462 0.00 0.00 37.81 3.09
2282 3105 5.123227 TGGTTCTCTTATCCCATTTTAGCG 58.877 41.667 0.00 0.00 0.00 4.26
2283 3106 5.123936 GGTTCTCTTATCCCATTTTAGCGT 58.876 41.667 0.00 0.00 0.00 5.07
2284 3107 5.236695 GGTTCTCTTATCCCATTTTAGCGTC 59.763 44.000 0.00 0.00 0.00 5.19
2286 3109 6.174720 TCTCTTATCCCATTTTAGCGTCAT 57.825 37.500 0.00 0.00 0.00 3.06
2297 3120 9.150348 CCCATTTTAGCGTCATTTTTATTTCTT 57.850 29.630 0.00 0.00 0.00 2.52
2327 3150 8.994429 TTGTTATAATTTGGCCTTGTGTATTG 57.006 30.769 3.32 0.00 0.00 1.90
2333 3156 2.672098 TGGCCTTGTGTATTGTTGGTT 58.328 42.857 3.32 0.00 0.00 3.67
2441 3266 9.927081 GGGTGAATATAATAGGGAATGATCAAT 57.073 33.333 0.00 0.00 0.00 2.57
2465 3290 7.167924 TCATTTATCTTGCTGCAACCATTTA 57.832 32.000 11.69 0.00 0.00 1.40
2473 3298 3.130869 TGCTGCAACCATTTATGATCCAC 59.869 43.478 0.00 0.00 0.00 4.02
2477 3302 3.491447 GCAACCATTTATGATCCACTGGC 60.491 47.826 0.00 0.00 0.00 4.85
2547 3372 8.771920 TCCCAATTTCTAATATATGTGCTACG 57.228 34.615 0.00 0.00 0.00 3.51
2563 3418 7.971183 TGTGCTACGCCATATAAATTGATAA 57.029 32.000 0.00 0.00 0.00 1.75
2564 3419 8.028540 TGTGCTACGCCATATAAATTGATAAG 57.971 34.615 0.00 0.00 0.00 1.73
2590 3502 6.684686 TCGTAAGTTTGGATATCCCTATTCG 58.315 40.000 19.34 13.89 39.48 3.34
2595 3507 6.026186 AGTTTGGATATCCCTATTCGGAGAT 58.974 40.000 19.34 0.00 36.55 2.75
2701 3614 5.043248 AGAAGAAATTCAAAAACCGCACAG 58.957 37.500 0.00 0.00 0.00 3.66
2731 3644 6.621380 GCTTACTCAACCGGGTGTAAATTTAC 60.621 42.308 21.31 19.44 0.00 2.01
3173 4087 8.864069 AATTATGTTTGAATCGTTTTGACACA 57.136 26.923 0.00 0.00 0.00 3.72
3174 4088 7.672351 TTATGTTTGAATCGTTTTGACACAC 57.328 32.000 0.00 0.00 0.00 3.82
3175 4089 4.416620 TGTTTGAATCGTTTTGACACACC 58.583 39.130 0.00 0.00 0.00 4.16
3176 4090 4.156922 TGTTTGAATCGTTTTGACACACCT 59.843 37.500 0.00 0.00 0.00 4.00
3177 4091 3.961477 TGAATCGTTTTGACACACCTG 57.039 42.857 0.00 0.00 0.00 4.00
3178 4092 2.616376 TGAATCGTTTTGACACACCTGG 59.384 45.455 0.00 0.00 0.00 4.45
3179 4093 2.631160 ATCGTTTTGACACACCTGGA 57.369 45.000 0.00 0.00 0.00 3.86
3180 4094 2.404923 TCGTTTTGACACACCTGGAA 57.595 45.000 0.00 0.00 0.00 3.53
3181 4095 2.925724 TCGTTTTGACACACCTGGAAT 58.074 42.857 0.00 0.00 0.00 3.01
3182 4096 4.074627 TCGTTTTGACACACCTGGAATA 57.925 40.909 0.00 0.00 0.00 1.75
3183 4097 4.647611 TCGTTTTGACACACCTGGAATAT 58.352 39.130 0.00 0.00 0.00 1.28
3184 4098 5.067273 TCGTTTTGACACACCTGGAATATT 58.933 37.500 0.00 0.00 0.00 1.28
3185 4099 6.231951 TCGTTTTGACACACCTGGAATATTA 58.768 36.000 0.00 0.00 0.00 0.98
3186 4100 6.882140 TCGTTTTGACACACCTGGAATATTAT 59.118 34.615 0.00 0.00 0.00 1.28
3187 4101 8.041919 TCGTTTTGACACACCTGGAATATTATA 58.958 33.333 0.00 0.00 0.00 0.98
3188 4102 8.670135 CGTTTTGACACACCTGGAATATTATAA 58.330 33.333 0.00 0.00 0.00 0.98
3191 4105 9.693739 TTTGACACACCTGGAATATTATAATGT 57.306 29.630 8.28 0.00 0.00 2.71
3192 4106 9.693739 TTGACACACCTGGAATATTATAATGTT 57.306 29.630 8.28 7.67 0.00 2.71
3193 4107 9.337396 TGACACACCTGGAATATTATAATGTTC 57.663 33.333 20.79 20.79 36.25 3.18
3194 4108 9.337396 GACACACCTGGAATATTATAATGTTCA 57.663 33.333 26.59 16.30 38.00 3.18
3195 4109 9.866655 ACACACCTGGAATATTATAATGTTCAT 57.133 29.630 26.59 12.71 38.00 2.57
3197 4111 9.520515 ACACCTGGAATATTATAATGTTCATCC 57.479 33.333 26.59 16.42 38.00 3.51
3198 4112 9.745018 CACCTGGAATATTATAATGTTCATCCT 57.255 33.333 26.59 10.83 38.00 3.24
3199 4113 9.745018 ACCTGGAATATTATAATGTTCATCCTG 57.255 33.333 26.59 17.76 38.00 3.86
3200 4114 9.182214 CCTGGAATATTATAATGTTCATCCTGG 57.818 37.037 26.59 21.12 38.00 4.45
3201 4115 9.182214 CTGGAATATTATAATGTTCATCCTGGG 57.818 37.037 26.59 11.11 38.00 4.45
3202 4116 8.115384 TGGAATATTATAATGTTCATCCTGGGG 58.885 37.037 26.59 0.00 38.00 4.96
3203 4117 7.561356 GGAATATTATAATGTTCATCCTGGGGG 59.439 40.741 26.59 0.00 38.00 5.40
3204 4118 7.845537 ATATTATAATGTTCATCCTGGGGGA 57.154 36.000 8.28 0.00 46.81 4.81
3205 4119 6.544327 ATTATAATGTTCATCCTGGGGGAA 57.456 37.500 0.00 0.00 45.78 3.97
3206 4120 2.834638 AATGTTCATCCTGGGGGAAG 57.165 50.000 0.00 0.00 45.78 3.46
3207 4121 0.259938 ATGTTCATCCTGGGGGAAGC 59.740 55.000 0.00 0.00 45.78 3.86
3208 4122 1.452108 GTTCATCCTGGGGGAAGCG 60.452 63.158 0.00 0.00 45.78 4.68
3209 4123 2.679342 TTCATCCTGGGGGAAGCGG 61.679 63.158 0.00 0.00 45.78 5.52
3210 4124 4.195334 CATCCTGGGGGAAGCGGG 62.195 72.222 0.00 0.00 45.78 6.13
3222 4270 0.250295 GAAGCGGGCATGCTACCATA 60.250 55.000 18.92 0.00 46.60 2.74
3225 4273 1.361668 GCGGGCATGCTACCATATCG 61.362 60.000 18.92 9.63 0.00 2.92
3226 4274 1.361668 CGGGCATGCTACCATATCGC 61.362 60.000 18.92 0.00 0.00 4.58
3230 4278 1.633561 CATGCTACCATATCGCCTCG 58.366 55.000 0.00 0.00 0.00 4.63
3233 4281 0.108615 GCTACCATATCGCCTCGCAT 60.109 55.000 0.00 0.00 0.00 4.73
3234 4282 1.134367 GCTACCATATCGCCTCGCATA 59.866 52.381 0.00 0.00 0.00 3.14
3237 4285 4.321304 GCTACCATATCGCCTCGCATATAT 60.321 45.833 0.00 0.00 0.00 0.86
3364 4581 8.260270 TGAGAGAGTTGATGTACAATTTCATG 57.740 34.615 0.00 0.00 40.76 3.07
3390 4607 4.578871 TGGTTCACGTCTTGAATGATCAT 58.421 39.130 1.18 1.18 46.14 2.45
3484 4701 4.277258 GAGCATCTTGAACAATATGCACG 58.723 43.478 26.91 2.36 46.74 5.34
3498 4715 7.195646 ACAATATGCACGTTCAAGATTATTGG 58.804 34.615 17.51 6.04 32.67 3.16
3534 4751 6.814644 CCTCTCATCATCTATTTGCATCTCTC 59.185 42.308 0.00 0.00 0.00 3.20
3619 4836 2.844369 AGAAGGGAGCAAGAGGAGATT 58.156 47.619 0.00 0.00 0.00 2.40
3637 4854 2.702592 TTATCGCGGTCCCTGAAATT 57.297 45.000 6.13 0.00 0.00 1.82
3643 4860 2.164338 GCGGTCCCTGAAATTGGTAAA 58.836 47.619 0.00 0.00 0.00 2.01
3658 4875 8.538409 AAATTGGTAAATTGAGCATGTCTTTC 57.462 30.769 0.00 0.00 36.11 2.62
3664 4881 1.795768 TGAGCATGTCTTTCGTGACC 58.204 50.000 0.00 0.00 36.21 4.02
3685 4902 7.065683 GTGACCAAAAAGATTGGACATGTTTTT 59.934 33.333 13.81 0.00 43.67 1.94
3779 4996 3.067461 CGGAATTCAAACTGTTGGGTTCA 59.933 43.478 7.93 0.00 35.29 3.18
3901 5119 0.326595 TGATGGGCTTGCGTAGGAAA 59.673 50.000 0.00 0.00 37.43 3.13
3944 5162 4.637091 TCATGATGAGGTACGTCGTCTTTA 59.363 41.667 28.60 16.81 37.34 1.85
3951 5169 4.730657 AGGTACGTCGTCTTTATTGACAG 58.269 43.478 0.00 0.00 36.82 3.51
3959 5177 3.935203 CGTCTTTATTGACAGGACATGCT 59.065 43.478 0.00 0.00 36.82 3.79
3975 5193 3.181472 ACATGCTTGATGAGATGCGTCTA 60.181 43.478 8.83 0.00 35.80 2.59
3976 5194 3.525268 TGCTTGATGAGATGCGTCTAA 57.475 42.857 8.83 0.75 33.97 2.10
4098 5321 2.080693 CTCACGATAGCGCTCTCCTAT 58.919 52.381 16.34 0.00 42.48 2.57
4152 5375 1.376553 GCTCCTTCCCACTGCTCAC 60.377 63.158 0.00 0.00 0.00 3.51
4287 5510 2.980233 GGTGCCGTTGCTTCTGCT 60.980 61.111 0.00 0.00 40.48 4.24
4319 5542 1.032014 ATCGCCAAAGTTGTGCAAGT 58.968 45.000 0.00 0.00 0.00 3.16
4330 5553 5.329035 AGTTGTGCAAGTTTGAAGATGTT 57.671 34.783 0.00 0.00 0.00 2.71
4369 5592 3.119708 CCAAAGTTTCACTAGCATGGAGC 60.120 47.826 0.00 0.00 46.19 4.70
4389 5612 5.106555 GGAGCGAATGAATTCACAAAGAAGA 60.107 40.000 11.07 0.00 40.15 2.87
4515 5743 3.232213 TCGTCCAGCAGTGAATAAGTC 57.768 47.619 0.00 0.00 0.00 3.01
4608 7861 5.103000 CCTCCGTCTTGAGTATTTGTACTG 58.897 45.833 0.00 0.00 0.00 2.74
4620 7873 8.092687 TGAGTATTTGTACTGTAGTTTCCTTCC 58.907 37.037 0.00 0.00 0.00 3.46
4639 7892 1.339631 CCGCTGGAAGGAATTGTGGTA 60.340 52.381 0.00 0.00 0.00 3.25
4750 8062 6.374588 TCACTTGGAGGTGGGTAAATTTAAA 58.625 36.000 0.00 0.00 37.75 1.52
4751 8063 7.013834 TCACTTGGAGGTGGGTAAATTTAAAT 58.986 34.615 0.00 0.00 37.75 1.40
4783 8095 7.905126 TCACATATTTTCTGTAGCATTGTACG 58.095 34.615 0.00 0.00 0.00 3.67
4785 8097 8.175069 CACATATTTTCTGTAGCATTGTACGTT 58.825 33.333 0.00 0.00 0.00 3.99
4812 8132 1.021968 GGCCATCGTTGGTATGTTCC 58.978 55.000 13.90 2.02 45.57 3.62
4832 8152 1.757118 CCTTCGATTGAGCTAGTGGGA 59.243 52.381 0.00 0.00 0.00 4.37
4835 8155 3.459232 TCGATTGAGCTAGTGGGATTG 57.541 47.619 0.00 0.00 0.00 2.67
4851 8171 5.294552 GTGGGATTGAACTACTAATGTGCTC 59.705 44.000 0.00 0.00 0.00 4.26
4869 8189 2.546778 CTCCGTGCGAGGCTAAATAAA 58.453 47.619 0.00 0.00 34.67 1.40
4897 8217 1.517538 TTGGCAGGATGGTCCCCATT 61.518 55.000 0.00 0.00 45.26 3.16
5058 8379 2.497675 GTGCTCTGGTGTCTCCTATTCA 59.502 50.000 0.00 0.00 37.07 2.57
5067 8388 5.901853 TGGTGTCTCCTATTCATCTTGAGAT 59.098 40.000 0.00 0.00 34.83 2.75
5095 8416 0.544697 ACTTGGCGGGGTAGGTTATG 59.455 55.000 0.00 0.00 0.00 1.90
5098 8419 1.339644 TGGCGGGGTAGGTTATGGAC 61.340 60.000 0.00 0.00 0.00 4.02
5119 8440 1.153628 CCACGACCTTCCGATCCAC 60.154 63.158 0.00 0.00 0.00 4.02
5130 8451 3.058115 CGATCCACGGTGCATGTTA 57.942 52.632 1.68 0.00 38.46 2.41
5157 8478 9.744468 AGTAACAACCTTGAATTGTTTTCATAC 57.256 29.630 8.27 1.46 45.71 2.39
5194 8515 0.950555 GGCACATTGTGTCTCAGCGA 60.951 55.000 17.64 0.00 35.05 4.93
5223 8544 0.238289 CGCCTTTGCTCATGTCGTTT 59.762 50.000 0.00 0.00 34.43 3.60
5236 8557 5.479306 TCATGTCGTTTTCTTCTCCTTAGG 58.521 41.667 0.00 0.00 0.00 2.69
5242 8563 5.302568 TCGTTTTCTTCTCCTTAGGTGTACA 59.697 40.000 0.00 0.00 0.00 2.90
5252 8573 6.895756 TCTCCTTAGGTGTACACTTACATGAT 59.104 38.462 24.55 4.77 40.40 2.45
5255 8576 7.616542 TCCTTAGGTGTACACTTACATGATGTA 59.383 37.037 24.55 0.23 40.40 2.29
5280 8602 2.666317 AGTCCTTTGGTTGTCTTTGGG 58.334 47.619 0.00 0.00 0.00 4.12
5285 8607 4.352595 TCCTTTGGTTGTCTTTGGGAGATA 59.647 41.667 0.00 0.00 36.61 1.98
5298 8620 4.946160 TGGGAGATAACAATTTCAGGGT 57.054 40.909 0.00 0.00 0.00 4.34
5300 8622 3.877508 GGGAGATAACAATTTCAGGGTCG 59.122 47.826 0.00 0.00 0.00 4.79
5313 8635 0.396811 AGGGTCGGGTTCACTTCTTG 59.603 55.000 0.00 0.00 0.00 3.02
5317 8639 1.057851 TCGGGTTCACTTCTTGGGGT 61.058 55.000 0.00 0.00 0.00 4.95
5318 8640 0.889186 CGGGTTCACTTCTTGGGGTG 60.889 60.000 0.00 0.00 35.06 4.61
5319 8641 0.185175 GGGTTCACTTCTTGGGGTGT 59.815 55.000 0.00 0.00 35.26 4.16
5320 8642 1.422402 GGGTTCACTTCTTGGGGTGTA 59.578 52.381 0.00 0.00 35.26 2.90
5322 8644 3.146847 GGTTCACTTCTTGGGGTGTAAG 58.853 50.000 0.00 0.00 35.26 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 7.009815 GTCGACGGAACATTTGTCATTAAGATA 59.990 37.037 0.00 0.00 0.00 1.98
26 27 5.120208 AGTCGACGGAACATTTGTCATTAAG 59.880 40.000 10.46 0.00 0.00 1.85
28 29 4.562082 AGTCGACGGAACATTTGTCATTA 58.438 39.130 10.46 0.00 0.00 1.90
38 39 3.928727 ATAAAGTGAGTCGACGGAACA 57.071 42.857 10.46 6.79 0.00 3.18
52 53 1.272480 GGGGTGTGGGCTGAATAAAGT 60.272 52.381 0.00 0.00 0.00 2.66
67 68 2.110352 GGTTTATCGGCGTGGGGTG 61.110 63.158 6.85 0.00 0.00 4.61
68 69 0.977108 TAGGTTTATCGGCGTGGGGT 60.977 55.000 6.85 0.00 0.00 4.95
74 75 7.837202 TTAATTATCCATAGGTTTATCGGCG 57.163 36.000 0.00 0.00 0.00 6.46
98 99 6.625532 AAGGCATTTTCATCCATAACCTTT 57.374 33.333 0.00 0.00 31.03 3.11
124 125 7.708752 TGAAAACCAATGGAAAATGTTCACTAC 59.291 33.333 6.16 0.00 35.25 2.73
148 149 4.535526 TGAAGATCACGATCAGGTTTGA 57.464 40.909 9.60 0.00 40.22 2.69
149 150 4.872124 TCATGAAGATCACGATCAGGTTTG 59.128 41.667 9.60 1.51 40.22 2.93
152 153 3.956848 TCTCATGAAGATCACGATCAGGT 59.043 43.478 9.60 0.00 40.22 4.00
159 160 4.031089 CGAGTTTGTCTCATGAAGATCACG 59.969 45.833 0.00 0.00 42.88 4.35
161 162 3.928992 GCGAGTTTGTCTCATGAAGATCA 59.071 43.478 0.00 0.00 42.88 2.92
178 179 1.751351 TGCTAGCTCTTACATGCGAGT 59.249 47.619 17.23 0.00 35.03 4.18
185 186 7.353414 AGATTTACTCATGCTAGCTCTTACA 57.647 36.000 17.23 0.00 0.00 2.41
189 190 6.047870 CACAAGATTTACTCATGCTAGCTCT 58.952 40.000 17.23 3.84 0.00 4.09
190 191 5.814705 ACACAAGATTTACTCATGCTAGCTC 59.185 40.000 17.23 1.27 0.00 4.09
206 209 7.363793 GGTTAATTATGGCCAAAGACACAAGAT 60.364 37.037 10.96 0.00 0.00 2.40
218 221 5.122707 TGACTCATGGTTAATTATGGCCA 57.877 39.130 8.56 8.56 35.28 5.36
256 259 2.093181 ACACAGTGAGCCAACTTACACA 60.093 45.455 7.81 0.00 34.91 3.72
265 268 1.748403 GGTCAGACACAGTGAGCCA 59.252 57.895 7.81 0.00 36.60 4.75
272 275 3.198068 CCGAATTATGGGTCAGACACAG 58.802 50.000 12.10 0.00 33.44 3.66
275 278 1.837439 AGCCGAATTATGGGTCAGACA 59.163 47.619 2.17 0.00 29.36 3.41
278 281 2.037772 AGCTAGCCGAATTATGGGTCAG 59.962 50.000 12.13 3.48 38.39 3.51
290 293 2.546778 CGGATGTTTAAAGCTAGCCGA 58.453 47.619 12.13 0.00 39.85 5.54
309 312 5.951568 TGTTACAAACACTACGAGGGGCG 62.952 52.174 0.00 0.00 40.56 6.13
310 313 2.071540 GTTACAAACACTACGAGGGGC 58.928 52.381 0.00 0.00 0.00 5.80
313 316 5.917541 AACATGTTACAAACACTACGAGG 57.082 39.130 9.97 0.00 45.50 4.63
320 323 6.034470 CCAGTTGTCAAACATGTTACAAACAC 59.966 38.462 22.38 14.30 37.87 3.32
339 342 0.698238 TCCCTCAACCATCCCAGTTG 59.302 55.000 0.00 0.00 44.80 3.16
422 425 9.856162 AACAAAGACCTATTACTGGTAGAAAAA 57.144 29.630 0.00 0.00 38.03 1.94
432 435 6.630638 GCTCCTAGCAACAAAGACCTATTACT 60.631 42.308 0.00 0.00 41.89 2.24
447 450 4.969359 AGGGTATTTTCTAGCTCCTAGCAA 59.031 41.667 0.00 0.00 45.56 3.91
459 462 6.099845 CACCTAGGTGTATCAGGGTATTTTCT 59.900 42.308 30.57 0.00 40.91 2.52
480 483 6.636454 TTTTTATCAGGTCCATCTACACCT 57.364 37.500 0.00 0.00 44.42 4.00
506 509 5.296151 TCCGGAATTGCTAATTCTCAGAT 57.704 39.130 0.00 0.00 45.17 2.90
507 510 4.753516 TCCGGAATTGCTAATTCTCAGA 57.246 40.909 0.00 10.45 45.17 3.27
508 511 5.818136 TTTCCGGAATTGCTAATTCTCAG 57.182 39.130 19.62 10.58 45.17 3.35
509 512 6.208599 ACTTTTTCCGGAATTGCTAATTCTCA 59.791 34.615 19.62 0.00 45.17 3.27
512 516 6.386654 TGACTTTTTCCGGAATTGCTAATTC 58.613 36.000 19.62 11.07 45.12 2.17
522 526 7.324178 TCAAAGATTTTTGACTTTTTCCGGAA 58.676 30.769 14.35 14.35 45.77 4.30
558 562 8.057536 AGTACGCCAATTGGTCAAATTTATTA 57.942 30.769 25.19 0.59 36.28 0.98
574 578 3.981211 AGTTTCTAAACGAGTACGCCAA 58.019 40.909 0.00 0.00 43.51 4.52
579 583 6.738352 TTGTCGAAGTTTCTAAACGAGTAC 57.262 37.500 0.00 0.00 43.51 2.73
590 594 5.742453 GGGAGTTTTTCTTTGTCGAAGTTTC 59.258 40.000 0.00 0.00 36.70 2.78
594 598 4.893424 TGGGAGTTTTTCTTTGTCGAAG 57.107 40.909 0.00 0.00 36.67 3.79
637 641 6.542821 TCACTCTATTGTCCTGGAATTTTGT 58.457 36.000 0.00 0.00 0.00 2.83
638 642 7.452880 TTCACTCTATTGTCCTGGAATTTTG 57.547 36.000 0.00 0.00 0.00 2.44
639 643 9.401058 CTATTCACTCTATTGTCCTGGAATTTT 57.599 33.333 0.00 0.00 0.00 1.82
642 646 7.682787 ACTATTCACTCTATTGTCCTGGAAT 57.317 36.000 0.00 0.00 0.00 3.01
710 714 2.980568 AGACTTTCGTGGTGTTGTTGA 58.019 42.857 0.00 0.00 0.00 3.18
711 715 3.757745 AAGACTTTCGTGGTGTTGTTG 57.242 42.857 0.00 0.00 0.00 3.33
756 761 2.616376 ACACATTTGCTCAAGCGTTACA 59.384 40.909 0.00 0.00 45.83 2.41
762 767 5.964887 TTTTACAACACATTTGCTCAAGC 57.035 34.783 0.00 0.00 42.50 4.01
786 791 8.606040 ACAAAAATGGTCGAAAATCATGATTT 57.394 26.923 24.83 24.83 42.35 2.17
787 792 9.703892 TTACAAAAATGGTCGAAAATCATGATT 57.296 25.926 15.36 15.36 0.00 2.57
932 946 0.823356 TGCAGGGCTTCTGGTTTGTC 60.823 55.000 9.07 0.00 43.54 3.18
950 964 0.530744 TGGCTAGCTCTACACGGTTG 59.469 55.000 15.72 0.00 0.00 3.77
985 1009 2.229543 TGTCCATTGTCTTGATTGCTGC 59.770 45.455 0.00 0.00 0.00 5.25
1006 1030 2.516888 CCCGTCCCTCACCAACACT 61.517 63.158 0.00 0.00 0.00 3.55
1008 1032 2.122769 TCCCGTCCCTCACCAACA 60.123 61.111 0.00 0.00 0.00 3.33
1010 1034 3.319198 GCTCCCGTCCCTCACCAA 61.319 66.667 0.00 0.00 0.00 3.67
1011 1035 4.631740 TGCTCCCGTCCCTCACCA 62.632 66.667 0.00 0.00 0.00 4.17
1012 1036 3.775654 CTGCTCCCGTCCCTCACC 61.776 72.222 0.00 0.00 0.00 4.02
1042 1066 0.251354 TCCTTGTGGCTGCTGATCTC 59.749 55.000 0.00 0.00 0.00 2.75
1266 1301 6.695429 ACTAGCAGTGTATGTGGATGATATG 58.305 40.000 0.00 0.00 0.00 1.78
1297 1332 5.750650 CGAGAAGTAACTAACTAGGCTAGC 58.249 45.833 21.26 6.04 37.50 3.42
1300 1335 4.096682 CAGCGAGAAGTAACTAACTAGGCT 59.903 45.833 0.00 0.00 37.50 4.58
1304 1339 6.598457 ACTCATCAGCGAGAAGTAACTAACTA 59.402 38.462 0.00 0.00 35.33 2.24
1305 1340 5.416326 ACTCATCAGCGAGAAGTAACTAACT 59.584 40.000 0.00 0.00 36.87 2.24
1306 1341 5.513495 CACTCATCAGCGAGAAGTAACTAAC 59.487 44.000 0.00 0.00 36.47 2.34
1307 1342 5.414765 TCACTCATCAGCGAGAAGTAACTAA 59.585 40.000 0.00 0.00 36.47 2.24
1319 1354 2.500442 GCGTCGTCACTCATCAGCG 61.500 63.158 0.00 0.00 0.00 5.18
1320 1355 1.008875 TTGCGTCGTCACTCATCAGC 61.009 55.000 0.00 0.00 0.00 4.26
1325 1360 3.684103 AAATTTTTGCGTCGTCACTCA 57.316 38.095 0.00 0.00 0.00 3.41
1369 1405 8.039603 TGTGTACTGGTGAAATATGAATGTTC 57.960 34.615 0.00 0.00 0.00 3.18
1370 1406 7.665559 ACTGTGTACTGGTGAAATATGAATGTT 59.334 33.333 0.00 0.00 0.00 2.71
1372 1408 7.615582 ACTGTGTACTGGTGAAATATGAATG 57.384 36.000 0.00 0.00 0.00 2.67
1373 1409 7.495934 GCTACTGTGTACTGGTGAAATATGAAT 59.504 37.037 0.00 0.00 0.00 2.57
1374 1410 6.816640 GCTACTGTGTACTGGTGAAATATGAA 59.183 38.462 0.00 0.00 0.00 2.57
1375 1411 6.154534 AGCTACTGTGTACTGGTGAAATATGA 59.845 38.462 0.00 0.00 0.00 2.15
1376 1412 6.256539 CAGCTACTGTGTACTGGTGAAATATG 59.743 42.308 0.00 0.00 0.00 1.78
1377 1413 6.154534 TCAGCTACTGTGTACTGGTGAAATAT 59.845 38.462 0.00 0.00 33.18 1.28
1378 1414 5.479027 TCAGCTACTGTGTACTGGTGAAATA 59.521 40.000 0.00 0.00 33.18 1.40
1379 1415 4.283467 TCAGCTACTGTGTACTGGTGAAAT 59.717 41.667 0.00 0.00 33.18 2.17
1380 1416 3.639561 TCAGCTACTGTGTACTGGTGAAA 59.360 43.478 0.00 0.00 33.18 2.69
1382 1418 2.871453 TCAGCTACTGTGTACTGGTGA 58.129 47.619 0.00 0.00 32.61 4.02
1383 1419 3.660501 TTCAGCTACTGTGTACTGGTG 57.339 47.619 0.00 0.00 32.61 4.17
1384 1420 6.605995 TGTATATTCAGCTACTGTGTACTGGT 59.394 38.462 0.00 0.00 32.61 4.00
1386 1422 7.931275 TCTGTATATTCAGCTACTGTGTACTG 58.069 38.462 4.54 0.00 35.63 2.74
1387 1423 8.407064 GTTCTGTATATTCAGCTACTGTGTACT 58.593 37.037 4.54 0.00 35.63 2.73
1392 1430 7.170393 TGTGTTCTGTATATTCAGCTACTGT 57.830 36.000 4.54 0.00 35.63 3.55
1407 1445 6.072508 AGCGTTTCAATAATGATGTGTTCTGT 60.073 34.615 0.00 0.00 34.96 3.41
1408 1446 6.317088 AGCGTTTCAATAATGATGTGTTCTG 58.683 36.000 0.00 0.00 34.96 3.02
1409 1447 6.500684 AGCGTTTCAATAATGATGTGTTCT 57.499 33.333 0.00 0.00 34.96 3.01
1436 1474 7.653713 ACATTATGGTTAAGAGCTACGATCAAG 59.346 37.037 0.00 0.00 0.00 3.02
1463 1501 8.165428 GCGTGTCTCAATATTTCTCTTATATGC 58.835 37.037 0.00 0.00 0.00 3.14
1478 1516 3.641436 TCATATAGTGGGCGTGTCTCAAT 59.359 43.478 0.00 0.00 0.00 2.57
1488 1526 7.831193 ACAGAATTAATGGATCATATAGTGGGC 59.169 37.037 0.00 0.00 0.00 5.36
1533 1572 9.307121 GCGGTTACTAGTAGAATCGTAGATATA 57.693 37.037 11.59 0.00 45.12 0.86
1537 1576 4.445718 CGCGGTTACTAGTAGAATCGTAGA 59.554 45.833 11.59 0.00 45.75 2.59
1550 1595 3.485947 AATAACGACACGCGGTTACTA 57.514 42.857 12.47 0.00 46.49 1.82
1551 1596 2.352503 AATAACGACACGCGGTTACT 57.647 45.000 12.47 0.00 46.49 2.24
1554 1599 3.252400 TCAATAATAACGACACGCGGTT 58.748 40.909 12.47 7.44 46.49 4.44
1555 1600 2.878580 TCAATAATAACGACACGCGGT 58.121 42.857 12.47 5.31 46.49 5.68
1556 1601 3.305094 ACTTCAATAATAACGACACGCGG 59.695 43.478 12.47 1.27 46.49 6.46
1559 1604 7.218145 AGCTTACTTCAATAATAACGACACG 57.782 36.000 0.00 0.00 0.00 4.49
1596 1641 6.581712 TGCAATCTACACATCTTGCTATGTA 58.418 36.000 7.52 0.00 43.33 2.29
1597 1642 5.430886 TGCAATCTACACATCTTGCTATGT 58.569 37.500 7.52 0.00 43.33 2.29
1598 1643 5.996669 TGCAATCTACACATCTTGCTATG 57.003 39.130 7.52 0.00 43.33 2.23
1707 1754 9.209048 TCTAACCAATATCTTCAACTAGGCTTA 57.791 33.333 0.00 0.00 0.00 3.09
1787 1837 3.939592 CCAAAACGATCCCTCTTAACTCC 59.060 47.826 0.00 0.00 0.00 3.85
1800 1850 1.751437 GCTCCCTAAGCCAAAACGAT 58.249 50.000 0.00 0.00 45.92 3.73
1814 1865 2.947127 ATTTAGGATCAGCAGCTCCC 57.053 50.000 0.00 0.00 30.10 4.30
1982 2033 3.947196 TGACAATGCAAGGACATATGGTC 59.053 43.478 7.80 2.47 46.20 4.02
1985 2036 9.537192 AAAATATTGACAATGCAAGGACATATG 57.463 29.630 11.05 0.00 0.00 1.78
2016 2078 5.089970 TGCATAGTGGACATAGCATATCC 57.910 43.478 0.00 0.00 0.00 2.59
2051 2113 7.277098 GCGAATAGCCTTTTTCGGTATATGATA 59.723 37.037 10.30 0.00 43.64 2.15
2052 2114 6.092259 GCGAATAGCCTTTTTCGGTATATGAT 59.908 38.462 10.30 0.00 43.64 2.45
2053 2115 5.407387 GCGAATAGCCTTTTTCGGTATATGA 59.593 40.000 10.30 0.00 43.64 2.15
2054 2116 5.618561 GCGAATAGCCTTTTTCGGTATATG 58.381 41.667 10.30 0.00 43.64 1.78
2055 2117 5.857822 GCGAATAGCCTTTTTCGGTATAT 57.142 39.130 10.30 0.00 43.64 0.86
2069 2131 9.046975 CTTTATCTATAAAGCGGGGCGAATAGC 62.047 44.444 9.01 0.00 41.69 2.97
2070 2132 3.587797 TCTATAAAGCGGGGCGAATAG 57.412 47.619 0.00 0.00 0.00 1.73
2071 2133 5.664294 TTATCTATAAAGCGGGGCGAATA 57.336 39.130 0.00 0.00 0.00 1.75
2072 2134 4.546829 TTATCTATAAAGCGGGGCGAAT 57.453 40.909 0.00 0.00 0.00 3.34
2073 2135 4.312443 CTTTATCTATAAAGCGGGGCGAA 58.688 43.478 9.01 0.00 41.69 4.70
2074 2136 3.921677 CTTTATCTATAAAGCGGGGCGA 58.078 45.455 9.01 0.00 41.69 5.54
2096 2158 6.139435 TGTAATTGTATGTTTGCAGTCGTTG 58.861 36.000 0.00 0.00 0.00 4.10
2097 2159 6.307031 TGTAATTGTATGTTTGCAGTCGTT 57.693 33.333 0.00 0.00 0.00 3.85
2098 2160 5.933187 TGTAATTGTATGTTTGCAGTCGT 57.067 34.783 0.00 0.00 0.00 4.34
2099 2161 8.334632 TGATATGTAATTGTATGTTTGCAGTCG 58.665 33.333 0.00 0.00 0.00 4.18
2189 2251 2.594592 ACCAGGAAAGTGTGCGCC 60.595 61.111 4.18 0.00 0.00 6.53
2190 2252 2.639286 CACCAGGAAAGTGTGCGC 59.361 61.111 0.00 0.00 0.00 6.09
2201 3021 2.795329 ACTACCAATTTCTGCACCAGG 58.205 47.619 0.00 0.00 31.51 4.45
2209 3029 9.802039 TTTCATAACCTACAACTACCAATTTCT 57.198 29.630 0.00 0.00 0.00 2.52
2253 3076 4.712051 TGGGATAAGAGAACCATCATGG 57.288 45.455 0.54 0.54 45.02 3.66
2297 3120 9.030452 ACACAAGGCCAAATTATAACAAAGATA 57.970 29.630 5.01 0.00 0.00 1.98
2333 3156 9.623000 GCTTAATTTATTAACCCTGGTCTAAGA 57.377 33.333 0.00 0.00 0.00 2.10
2387 3210 0.315251 GCTCCCACAACAAAAGCCTC 59.685 55.000 0.00 0.00 0.00 4.70
2389 3212 1.007387 CGCTCCCACAACAAAAGCC 60.007 57.895 0.00 0.00 0.00 4.35
2441 3266 5.664294 AATGGTTGCAGCAAGATAAATGA 57.336 34.783 8.49 0.00 0.00 2.57
2465 3290 0.549950 CTCCCAAGCCAGTGGATCAT 59.450 55.000 15.20 0.00 41.65 2.45
2473 3298 1.614824 ACCTCTCCTCCCAAGCCAG 60.615 63.158 0.00 0.00 0.00 4.85
2477 3302 1.492133 TTGCCACCTCTCCTCCCAAG 61.492 60.000 0.00 0.00 0.00 3.61
2563 3418 5.952347 AGGGATATCCAAACTTACGAACT 57.048 39.130 23.27 3.68 38.24 3.01
2564 3419 7.115947 CGAATAGGGATATCCAAACTTACGAAC 59.884 40.741 23.27 1.31 38.24 3.95
2677 3589 4.803088 TGTGCGGTTTTTGAATTTCTTCTG 59.197 37.500 0.00 0.00 32.29 3.02
2693 3606 1.409427 GAGTAAGCTATCCTGTGCGGT 59.591 52.381 0.00 0.00 0.00 5.68
2701 3614 1.761198 ACCCGGTTGAGTAAGCTATCC 59.239 52.381 0.00 0.00 32.23 2.59
2750 3664 6.805760 GGACATTTGCATGTTTTTGTGTTTTT 59.194 30.769 0.00 0.00 44.22 1.94
3171 4085 9.520515 GGATGAACATTATAATATTCCAGGTGT 57.479 33.333 12.75 0.00 0.00 4.16
3172 4086 9.745018 AGGATGAACATTATAATATTCCAGGTG 57.255 33.333 12.75 0.00 0.00 4.00
3173 4087 9.745018 CAGGATGAACATTATAATATTCCAGGT 57.255 33.333 12.75 0.00 39.69 4.00
3174 4088 9.182214 CCAGGATGAACATTATAATATTCCAGG 57.818 37.037 12.75 9.75 39.69 4.45
3175 4089 9.182214 CCCAGGATGAACATTATAATATTCCAG 57.818 37.037 12.75 5.74 39.69 3.86
3176 4090 8.115384 CCCCAGGATGAACATTATAATATTCCA 58.885 37.037 12.75 3.42 39.69 3.53
3177 4091 7.561356 CCCCCAGGATGAACATTATAATATTCC 59.439 40.741 12.75 8.07 39.69 3.01
3178 4092 8.336235 TCCCCCAGGATGAACATTATAATATTC 58.664 37.037 9.16 9.16 39.69 1.75
3179 4093 8.243403 TCCCCCAGGATGAACATTATAATATT 57.757 34.615 0.00 0.00 39.69 1.28
3180 4094 7.845537 TCCCCCAGGATGAACATTATAATAT 57.154 36.000 0.00 0.00 39.69 1.28
3181 4095 7.655819 TTCCCCCAGGATGAACATTATAATA 57.344 36.000 0.00 0.00 43.54 0.98
3182 4096 6.544327 TTCCCCCAGGATGAACATTATAAT 57.456 37.500 0.00 0.00 43.54 1.28
3183 4097 5.692781 GCTTCCCCCAGGATGAACATTATAA 60.693 44.000 0.00 0.00 43.54 0.98
3184 4098 4.202567 GCTTCCCCCAGGATGAACATTATA 60.203 45.833 0.00 0.00 43.54 0.98
3185 4099 3.437052 GCTTCCCCCAGGATGAACATTAT 60.437 47.826 0.00 0.00 43.54 1.28
3186 4100 2.091885 GCTTCCCCCAGGATGAACATTA 60.092 50.000 0.00 0.00 43.54 1.90
3187 4101 1.342374 GCTTCCCCCAGGATGAACATT 60.342 52.381 0.00 0.00 43.54 2.71
3188 4102 0.259938 GCTTCCCCCAGGATGAACAT 59.740 55.000 0.00 0.00 43.54 2.71
3189 4103 1.691219 GCTTCCCCCAGGATGAACA 59.309 57.895 0.00 0.00 43.54 3.18
3190 4104 1.452108 CGCTTCCCCCAGGATGAAC 60.452 63.158 0.00 0.00 43.54 3.18
3191 4105 2.679342 CCGCTTCCCCCAGGATGAA 61.679 63.158 0.00 0.00 43.54 2.57
3192 4106 3.089874 CCGCTTCCCCCAGGATGA 61.090 66.667 0.00 0.00 43.54 2.92
3193 4107 4.195334 CCCGCTTCCCCCAGGATG 62.195 72.222 0.00 0.00 43.54 3.51
3200 4114 4.189580 TAGCATGCCCGCTTCCCC 62.190 66.667 15.66 0.00 43.56 4.81
3201 4115 2.902343 GTAGCATGCCCGCTTCCC 60.902 66.667 15.66 0.00 43.56 3.97
3202 4116 2.902343 GGTAGCATGCCCGCTTCC 60.902 66.667 15.66 3.46 43.56 3.46
3203 4117 0.250295 TATGGTAGCATGCCCGCTTC 60.250 55.000 15.66 0.00 41.90 3.86
3204 4118 0.401738 ATATGGTAGCATGCCCGCTT 59.598 50.000 15.66 0.00 41.90 4.68
3205 4119 0.036010 GATATGGTAGCATGCCCGCT 60.036 55.000 15.66 3.74 41.90 5.52
3206 4120 1.361668 CGATATGGTAGCATGCCCGC 61.362 60.000 15.66 4.54 41.90 6.13
3207 4121 1.361668 GCGATATGGTAGCATGCCCG 61.362 60.000 15.66 16.58 41.90 6.13
3208 4122 1.026718 GGCGATATGGTAGCATGCCC 61.027 60.000 19.12 10.28 41.90 5.36
3209 4123 0.036010 AGGCGATATGGTAGCATGCC 60.036 55.000 21.23 21.23 43.46 4.40
3210 4124 1.363744 GAGGCGATATGGTAGCATGC 58.636 55.000 17.58 10.51 0.00 4.06
3211 4125 1.633561 CGAGGCGATATGGTAGCATG 58.366 55.000 17.58 2.07 0.00 4.06
3212 4126 0.108615 GCGAGGCGATATGGTAGCAT 60.109 55.000 12.78 12.78 0.00 3.79
3222 4270 2.965831 ACCCATATATATGCGAGGCGAT 59.034 45.455 16.08 0.00 32.40 4.58
3225 4273 3.133003 AGACACCCATATATATGCGAGGC 59.867 47.826 16.08 9.43 32.40 4.70
3226 4274 5.344743 AAGACACCCATATATATGCGAGG 57.655 43.478 16.08 14.07 32.40 4.63
3237 4285 6.828273 CCACTCAATGATAAAAGACACCCATA 59.172 38.462 0.00 0.00 0.00 2.74
3288 4504 5.224441 TGCTCTCCACTTACCCCTAATAAT 58.776 41.667 0.00 0.00 0.00 1.28
3401 4618 9.577110 AAACCCGACAATATACATATATGTACG 57.423 33.333 24.43 20.58 45.11 3.67
3412 4629 9.498176 AATATAGTGGAAAACCCGACAATATAC 57.502 33.333 0.00 0.00 37.93 1.47
3475 4692 7.333528 ACCAATAATCTTGAACGTGCATATT 57.666 32.000 0.00 3.41 0.00 1.28
3477 4694 6.751514 AACCAATAATCTTGAACGTGCATA 57.248 33.333 0.00 0.00 0.00 3.14
3482 4699 4.522789 AGCCAAACCAATAATCTTGAACGT 59.477 37.500 0.00 0.00 0.00 3.99
3484 4701 7.330946 GGTTAAGCCAAACCAATAATCTTGAAC 59.669 37.037 11.90 0.00 46.85 3.18
3498 4715 5.189180 AGATGATGAGAGGTTAAGCCAAAC 58.811 41.667 0.00 0.00 40.61 2.93
3534 4751 5.413833 AGGTACCTATACGACAATGTATCCG 59.586 44.000 14.41 0.00 36.48 4.18
3619 4836 1.474320 CCAATTTCAGGGACCGCGATA 60.474 52.381 8.23 0.00 0.00 2.92
3637 4854 4.759693 ACGAAAGACATGCTCAATTTACCA 59.240 37.500 0.00 0.00 0.00 3.25
3643 4860 2.744202 GGTCACGAAAGACATGCTCAAT 59.256 45.455 0.00 0.00 40.29 2.57
3658 4875 3.980646 TGTCCAATCTTTTTGGTCACG 57.019 42.857 4.42 0.00 40.40 4.35
3685 4902 8.573885 TGACGAACTAACTGATCTAGAAAGAAA 58.426 33.333 11.67 0.72 34.73 2.52
3686 4903 8.107399 TGACGAACTAACTGATCTAGAAAGAA 57.893 34.615 11.67 1.00 34.73 2.52
3687 4904 7.683437 TGACGAACTAACTGATCTAGAAAGA 57.317 36.000 11.67 0.00 35.80 2.52
3688 4905 8.744008 TTTGACGAACTAACTGATCTAGAAAG 57.256 34.615 0.00 0.00 0.00 2.62
3764 4981 5.049828 GGAAAATCTGAACCCAACAGTTTG 58.950 41.667 0.00 0.00 36.81 2.93
3805 5022 0.538584 CAGCAGCCTCTGGACATACA 59.461 55.000 0.00 0.00 31.21 2.29
3806 5023 0.826715 TCAGCAGCCTCTGGACATAC 59.173 55.000 3.37 0.00 34.91 2.39
3807 5024 1.117994 CTCAGCAGCCTCTGGACATA 58.882 55.000 3.37 0.00 34.91 2.29
3853 5071 1.871080 CATACTCATGGGGTTCGAGC 58.129 55.000 0.00 0.00 0.00 5.03
3865 5083 0.546507 TCACCACAGGGCCATACTCA 60.547 55.000 6.18 0.00 37.90 3.41
3944 5162 3.945921 CTCATCAAGCATGTCCTGTCAAT 59.054 43.478 0.00 0.00 33.66 2.57
3951 5169 1.263484 CGCATCTCATCAAGCATGTCC 59.737 52.381 0.00 0.00 33.66 4.02
3959 5177 6.108687 AGTGAAATTAGACGCATCTCATCAA 58.891 36.000 0.00 0.00 36.29 2.57
4032 5254 2.592308 GGCTTCTCGAGGCCCAAT 59.408 61.111 18.90 0.00 46.66 3.16
4038 5260 0.395862 TAGGGTCTGGCTTCTCGAGG 60.396 60.000 13.56 0.00 0.00 4.63
4051 5274 0.978146 TGCAGGGCTCTTCTAGGGTC 60.978 60.000 0.00 0.00 0.00 4.46
4080 5303 1.537638 ACATAGGAGAGCGCTATCGTG 59.462 52.381 31.10 25.77 38.14 4.35
4138 5361 1.734477 CGTCGTGAGCAGTGGGAAG 60.734 63.158 0.00 0.00 0.00 3.46
4152 5375 1.012998 CGATGTGAGCATTGCGTCG 60.013 57.895 2.38 6.10 35.07 5.12
4287 5510 1.887242 GGCGATTCCGTATGCTGCA 60.887 57.895 4.13 4.13 38.24 4.41
4324 5547 8.316497 TGGATGAGAGAGAATTCTAAACATCT 57.684 34.615 25.51 17.58 37.41 2.90
4330 5553 9.442047 GAAACTTTGGATGAGAGAGAATTCTAA 57.558 33.333 8.25 0.00 32.53 2.10
4369 5592 8.232513 TCTCATTCTTCTTTGTGAATTCATTCG 58.767 33.333 12.12 1.37 39.62 3.34
4515 5743 3.415212 TCTGCCATCTTTCTTCACCTTG 58.585 45.455 0.00 0.00 0.00 3.61
4608 7861 2.467566 TTCCAGCGGAAGGAAACTAC 57.532 50.000 6.01 0.00 41.94 2.73
4620 7873 2.107950 TACCACAATTCCTTCCAGCG 57.892 50.000 0.00 0.00 0.00 5.18
4631 7884 9.632638 ATTTAGCTCAGATAAACATACCACAAT 57.367 29.630 0.00 0.00 0.00 2.71
4783 8095 2.614057 CCAACGATGGCCTCATCTTAAC 59.386 50.000 3.32 0.00 45.66 2.01
4785 8097 2.620251 CCAACGATGGCCTCATCTTA 57.380 50.000 3.32 0.00 45.66 2.10
4812 8132 1.757118 TCCCACTAGCTCAATCGAAGG 59.243 52.381 0.00 0.00 0.00 3.46
4832 8152 4.870426 CACGGAGCACATTAGTAGTTCAAT 59.130 41.667 0.00 0.00 0.00 2.57
4835 8155 2.603560 GCACGGAGCACATTAGTAGTTC 59.396 50.000 0.00 0.00 44.79 3.01
4851 8171 3.750639 TTTTTATTTAGCCTCGCACGG 57.249 42.857 0.00 0.00 0.00 4.94
4897 8217 5.562298 AGTAAACCTAGCCTCAGAAACAA 57.438 39.130 0.00 0.00 0.00 2.83
4935 8255 3.863424 CCGTGACACGCTAACAAGATAAT 59.137 43.478 22.46 0.00 40.91 1.28
4950 8270 2.482316 CCAACAAGTGTCTACCGTGACA 60.482 50.000 0.00 0.00 43.72 3.58
4952 8272 1.069513 CCCAACAAGTGTCTACCGTGA 59.930 52.381 0.00 0.00 0.00 4.35
4959 8279 2.107204 AGATCAAGCCCAACAAGTGTCT 59.893 45.455 0.00 0.00 0.00 3.41
4962 8282 1.466167 CGAGATCAAGCCCAACAAGTG 59.534 52.381 0.00 0.00 0.00 3.16
5058 8379 4.442612 CCAAGTCCACGATCATCTCAAGAT 60.443 45.833 0.00 0.00 34.56 2.40
5067 8388 2.264480 CCGCCAAGTCCACGATCA 59.736 61.111 0.00 0.00 0.00 2.92
5095 8416 2.047179 GGAAGGTCGTGGCTGTCC 60.047 66.667 0.00 0.00 0.00 4.02
5098 8419 1.519455 GATCGGAAGGTCGTGGCTG 60.519 63.158 0.00 0.00 0.00 4.85
5119 8440 3.500680 AGGTTGTTACTTAACATGCACCG 59.499 43.478 12.62 0.00 43.90 4.94
5122 8443 6.701145 TTCAAGGTTGTTACTTAACATGCA 57.299 33.333 2.71 0.00 44.72 3.96
5124 8445 9.528018 AACAATTCAAGGTTGTTACTTAACATG 57.472 29.630 2.71 0.00 45.19 3.21
5194 8515 2.325082 GCAAAGGCGACACGTGGAT 61.325 57.895 21.57 0.00 0.00 3.41
5223 8544 6.779049 TGTAAGTGTACACCTAAGGAGAAGAA 59.221 38.462 22.28 0.00 35.23 2.52
5252 8573 7.549147 AAGACAACCAAAGGACTATACTACA 57.451 36.000 0.00 0.00 0.00 2.74
5255 8576 6.238648 CCAAAGACAACCAAAGGACTATACT 58.761 40.000 0.00 0.00 0.00 2.12
5263 8585 2.944129 TCTCCCAAAGACAACCAAAGG 58.056 47.619 0.00 0.00 0.00 3.11
5267 8589 4.715534 TGTTATCTCCCAAAGACAACCA 57.284 40.909 0.00 0.00 40.12 3.67
5280 8602 3.877508 CCCGACCCTGAAATTGTTATCTC 59.122 47.826 0.00 0.00 0.00 2.75
5285 8607 2.235891 GAACCCGACCCTGAAATTGTT 58.764 47.619 0.00 0.00 0.00 2.83
5293 8615 0.396811 AAGAAGTGAACCCGACCCTG 59.603 55.000 0.00 0.00 0.00 4.45
5298 8620 1.057851 ACCCCAAGAAGTGAACCCGA 61.058 55.000 0.00 0.00 0.00 5.14
5300 8622 0.185175 ACACCCCAAGAAGTGAACCC 59.815 55.000 0.00 0.00 37.43 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.