Multiple sequence alignment - TraesCS7D01G410600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G410600 chr7D 100.000 2555 0 0 1 2555 529764111 529766665 0.000000e+00 4719
1 TraesCS7D01G410600 chr7D 85.640 1351 156 25 1239 2555 315251589 315250243 0.000000e+00 1386
2 TraesCS7D01G410600 chr7D 95.255 274 12 1 1 274 133680041 133680313 1.400000e-117 433
3 TraesCS7D01G410600 chr2B 78.737 2027 375 37 572 2554 594258351 594256337 0.000000e+00 1304
4 TraesCS7D01G410600 chr3B 82.684 1334 189 21 570 1890 505173881 505172577 0.000000e+00 1146
5 TraesCS7D01G410600 chr3B 76.603 1466 305 31 571 2009 814488873 814487419 0.000000e+00 773
6 TraesCS7D01G410600 chr3B 83.895 683 88 5 1895 2555 505058297 505057615 1.290000e-177 632
7 TraesCS7D01G410600 chr3B 71.816 479 130 5 1040 1515 252348389 252348865 5.740000e-27 132
8 TraesCS7D01G410600 chr1A 81.785 1389 215 19 1200 2554 253037564 253038948 0.000000e+00 1129
9 TraesCS7D01G410600 chr2D 76.039 1732 333 63 719 2399 483846136 483844436 0.000000e+00 824
10 TraesCS7D01G410600 chr1B 85.411 706 100 3 572 1275 18854214 18853510 0.000000e+00 730
11 TraesCS7D01G410600 chr1B 81.218 197 34 3 1 195 341131540 341131345 3.400000e-34 156
12 TraesCS7D01G410600 chr5B 81.486 875 151 10 631 1500 708916901 708917769 0.000000e+00 708
13 TraesCS7D01G410600 chr5B 77.047 806 145 25 1674 2451 708926461 708927254 6.530000e-116 427
14 TraesCS7D01G410600 chr5B 77.796 626 129 9 1050 1666 454385172 454385796 6.670000e-101 377
15 TraesCS7D01G410600 chr5B 84.532 278 32 10 1 269 68178381 68178106 5.420000e-67 265
16 TraesCS7D01G410600 chr3D 78.153 1126 200 36 572 1677 505326121 505325022 0.000000e+00 675
17 TraesCS7D01G410600 chr3D 89.669 484 49 1 2073 2555 46195691 46195208 1.300000e-172 616
18 TraesCS7D01G410600 chr7A 77.366 1025 202 18 1557 2555 316036212 316035192 4.740000e-162 580
19 TraesCS7D01G410600 chr6A 84.874 476 69 3 2075 2548 3678805 3679279 6.400000e-131 477
20 TraesCS7D01G410600 chr4D 97.059 272 7 1 1 272 345006778 345006508 8.330000e-125 457
21 TraesCS7D01G410600 chr1D 96.703 273 8 1 1 272 461380353 461380081 1.080000e-123 453
22 TraesCS7D01G410600 chr5D 95.911 269 9 2 1 269 541575650 541575916 3.900000e-118 435
23 TraesCS7D01G410600 chr5D 94.964 278 11 2 1 278 520508275 520508001 1.400000e-117 433
24 TraesCS7D01G410600 chr5D 81.853 259 38 7 26 278 256071654 256071399 2.580000e-50 209
25 TraesCS7D01G410600 chr4B 73.541 1251 276 30 572 1793 450038083 450036859 2.350000e-115 425
26 TraesCS7D01G410600 chr4B 74.644 1053 205 44 586 1608 416633282 416632262 2.370000e-110 409
27 TraesCS7D01G410600 chr5A 94.074 270 14 2 1 269 491531484 491531752 2.370000e-110 409
28 TraesCS7D01G410600 chr3A 81.743 482 83 5 2076 2554 729333745 729333266 5.120000e-107 398
29 TraesCS7D01G410600 chr3A 92.989 271 16 3 1 269 619104803 619105072 2.380000e-105 392
30 TraesCS7D01G410600 chr7B 93.578 109 4 2 451 557 567881699 567881806 2.630000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G410600 chr7D 529764111 529766665 2554 False 4719 4719 100.000 1 2555 1 chr7D.!!$F2 2554
1 TraesCS7D01G410600 chr7D 315250243 315251589 1346 True 1386 1386 85.640 1239 2555 1 chr7D.!!$R1 1316
2 TraesCS7D01G410600 chr2B 594256337 594258351 2014 True 1304 1304 78.737 572 2554 1 chr2B.!!$R1 1982
3 TraesCS7D01G410600 chr3B 505172577 505173881 1304 True 1146 1146 82.684 570 1890 1 chr3B.!!$R2 1320
4 TraesCS7D01G410600 chr3B 814487419 814488873 1454 True 773 773 76.603 571 2009 1 chr3B.!!$R3 1438
5 TraesCS7D01G410600 chr3B 505057615 505058297 682 True 632 632 83.895 1895 2555 1 chr3B.!!$R1 660
6 TraesCS7D01G410600 chr1A 253037564 253038948 1384 False 1129 1129 81.785 1200 2554 1 chr1A.!!$F1 1354
7 TraesCS7D01G410600 chr2D 483844436 483846136 1700 True 824 824 76.039 719 2399 1 chr2D.!!$R1 1680
8 TraesCS7D01G410600 chr1B 18853510 18854214 704 True 730 730 85.411 572 1275 1 chr1B.!!$R1 703
9 TraesCS7D01G410600 chr5B 708916901 708917769 868 False 708 708 81.486 631 1500 1 chr5B.!!$F2 869
10 TraesCS7D01G410600 chr5B 708926461 708927254 793 False 427 427 77.047 1674 2451 1 chr5B.!!$F3 777
11 TraesCS7D01G410600 chr5B 454385172 454385796 624 False 377 377 77.796 1050 1666 1 chr5B.!!$F1 616
12 TraesCS7D01G410600 chr3D 505325022 505326121 1099 True 675 675 78.153 572 1677 1 chr3D.!!$R2 1105
13 TraesCS7D01G410600 chr7A 316035192 316036212 1020 True 580 580 77.366 1557 2555 1 chr7A.!!$R1 998
14 TraesCS7D01G410600 chr4B 450036859 450038083 1224 True 425 425 73.541 572 1793 1 chr4B.!!$R2 1221
15 TraesCS7D01G410600 chr4B 416632262 416633282 1020 True 409 409 74.644 586 1608 1 chr4B.!!$R1 1022

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 0.03601 CTTCAGGGCCATCGACAACT 60.036 55.0 6.18 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1610 1649 0.391597 AACACCGAACAGTGACCGAT 59.608 50.0 0.0 0.0 40.34 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.239991 ACCAGAGCCAGGTGACAT 57.760 55.556 0.00 0.00 38.13 3.06
18 19 1.986413 ACCAGAGCCAGGTGACATC 59.014 57.895 0.00 0.00 38.13 3.06
19 20 0.546267 ACCAGAGCCAGGTGACATCT 60.546 55.000 0.00 0.00 38.13 2.90
20 21 0.617413 CCAGAGCCAGGTGACATCTT 59.383 55.000 0.00 0.00 0.00 2.40
21 22 1.406614 CCAGAGCCAGGTGACATCTTC 60.407 57.143 0.00 0.00 0.00 2.87
22 23 1.277273 CAGAGCCAGGTGACATCTTCA 59.723 52.381 0.00 0.00 0.00 3.02
23 24 1.554160 AGAGCCAGGTGACATCTTCAG 59.446 52.381 0.00 0.00 33.71 3.02
24 25 0.617413 AGCCAGGTGACATCTTCAGG 59.383 55.000 0.00 0.00 33.71 3.86
25 26 0.393537 GCCAGGTGACATCTTCAGGG 60.394 60.000 0.00 0.00 33.71 4.45
26 27 0.393537 CCAGGTGACATCTTCAGGGC 60.394 60.000 0.00 0.00 33.71 5.19
27 28 0.393537 CAGGTGACATCTTCAGGGCC 60.394 60.000 0.00 0.00 33.71 5.80
28 29 0.842030 AGGTGACATCTTCAGGGCCA 60.842 55.000 6.18 0.00 33.71 5.36
29 30 0.257039 GGTGACATCTTCAGGGCCAT 59.743 55.000 6.18 0.00 33.71 4.40
30 31 1.673168 GTGACATCTTCAGGGCCATC 58.327 55.000 6.18 0.00 33.71 3.51
31 32 0.178767 TGACATCTTCAGGGCCATCG 59.821 55.000 6.18 0.00 0.00 3.84
32 33 0.465705 GACATCTTCAGGGCCATCGA 59.534 55.000 6.18 0.00 0.00 3.59
33 34 0.179000 ACATCTTCAGGGCCATCGAC 59.821 55.000 6.18 0.00 0.00 4.20
34 35 0.178767 CATCTTCAGGGCCATCGACA 59.821 55.000 6.18 0.00 0.00 4.35
35 36 0.911769 ATCTTCAGGGCCATCGACAA 59.088 50.000 6.18 0.00 0.00 3.18
36 37 0.036388 TCTTCAGGGCCATCGACAAC 60.036 55.000 6.18 0.00 0.00 3.32
37 38 0.036010 CTTCAGGGCCATCGACAACT 60.036 55.000 6.18 0.00 0.00 3.16
38 39 0.036388 TTCAGGGCCATCGACAACTC 60.036 55.000 6.18 0.00 0.00 3.01
39 40 1.450312 CAGGGCCATCGACAACTCC 60.450 63.158 6.18 0.00 0.00 3.85
40 41 2.511600 GGGCCATCGACAACTCCG 60.512 66.667 4.39 0.00 0.00 4.63
41 42 2.264794 GGCCATCGACAACTCCGT 59.735 61.111 0.00 0.00 0.00 4.69
42 43 1.810030 GGCCATCGACAACTCCGTC 60.810 63.158 0.00 0.00 0.00 4.79
43 44 1.810030 GCCATCGACAACTCCGTCC 60.810 63.158 0.00 0.00 31.91 4.79
44 45 1.589630 CCATCGACAACTCCGTCCA 59.410 57.895 0.00 0.00 31.91 4.02
45 46 0.037697 CCATCGACAACTCCGTCCAA 60.038 55.000 0.00 0.00 31.91 3.53
46 47 1.068474 CATCGACAACTCCGTCCAAC 58.932 55.000 0.00 0.00 31.91 3.77
47 48 0.966920 ATCGACAACTCCGTCCAACT 59.033 50.000 0.00 0.00 31.91 3.16
48 49 0.313043 TCGACAACTCCGTCCAACTC 59.687 55.000 0.00 0.00 31.91 3.01
49 50 0.314302 CGACAACTCCGTCCAACTCT 59.686 55.000 0.00 0.00 31.91 3.24
50 51 1.784525 GACAACTCCGTCCAACTCTG 58.215 55.000 0.00 0.00 0.00 3.35
51 52 0.393077 ACAACTCCGTCCAACTCTGG 59.607 55.000 0.00 0.00 45.08 3.86
52 53 0.951040 CAACTCCGTCCAACTCTGGC 60.951 60.000 0.00 0.00 43.17 4.85
53 54 2.125912 CTCCGTCCAACTCTGGCG 60.126 66.667 0.00 0.00 43.17 5.69
54 55 4.373116 TCCGTCCAACTCTGGCGC 62.373 66.667 0.00 0.00 43.17 6.53
55 56 4.379243 CCGTCCAACTCTGGCGCT 62.379 66.667 7.64 0.00 43.17 5.92
56 57 2.571757 CGTCCAACTCTGGCGCTA 59.428 61.111 7.64 0.00 43.17 4.26
57 58 1.517257 CGTCCAACTCTGGCGCTAG 60.517 63.158 15.59 15.59 43.17 3.42
58 59 1.153549 GTCCAACTCTGGCGCTAGG 60.154 63.158 21.43 13.70 43.17 3.02
59 60 2.512515 CCAACTCTGGCGCTAGGC 60.513 66.667 21.43 0.00 44.11 3.93
81 82 3.834799 GCCATTGGCCTGCAGAGC 61.835 66.667 17.39 16.67 44.06 4.09
87 88 4.811364 GGCCTGCAGAGCCCCTTC 62.811 72.222 26.88 9.00 45.16 3.46
88 89 3.726144 GCCTGCAGAGCCCCTTCT 61.726 66.667 17.39 0.00 0.00 2.85
89 90 2.271497 CCTGCAGAGCCCCTTCTG 59.729 66.667 17.39 0.00 45.85 3.02
90 91 2.271497 CTGCAGAGCCCCTTCTGG 59.729 66.667 8.42 0.00 43.80 3.86
100 101 3.727387 CCTTCTGGGATCCACCGT 58.273 61.111 15.23 0.00 40.11 4.83
101 102 1.221840 CCTTCTGGGATCCACCGTG 59.778 63.158 15.23 0.11 40.11 4.94
102 103 1.264749 CCTTCTGGGATCCACCGTGA 61.265 60.000 15.23 0.74 40.11 4.35
103 104 0.176680 CTTCTGGGATCCACCGTGAG 59.823 60.000 15.23 0.00 40.11 3.51
104 105 0.252057 TTCTGGGATCCACCGTGAGA 60.252 55.000 15.23 1.65 40.11 3.27
105 106 0.252057 TCTGGGATCCACCGTGAGAA 60.252 55.000 15.23 0.00 40.11 2.87
106 107 0.613260 CTGGGATCCACCGTGAGAAA 59.387 55.000 15.23 0.00 40.11 2.52
107 108 1.003118 CTGGGATCCACCGTGAGAAAA 59.997 52.381 15.23 0.00 40.11 2.29
108 109 1.422024 TGGGATCCACCGTGAGAAAAA 59.578 47.619 15.23 0.00 40.11 1.94
128 129 6.968131 AAAAAGTTTTGCCTCTCTTTTCAC 57.032 33.333 0.61 0.00 38.57 3.18
129 130 3.971032 AGTTTTGCCTCTCTTTTCACG 57.029 42.857 0.00 0.00 0.00 4.35
130 131 2.618709 AGTTTTGCCTCTCTTTTCACGG 59.381 45.455 0.00 0.00 0.00 4.94
131 132 0.951558 TTTGCCTCTCTTTTCACGGC 59.048 50.000 0.00 0.00 41.06 5.68
132 133 0.889186 TTGCCTCTCTTTTCACGGCC 60.889 55.000 0.00 0.00 39.97 6.13
133 134 2.391389 GCCTCTCTTTTCACGGCCG 61.391 63.158 26.86 26.86 34.75 6.13
134 135 1.741770 CCTCTCTTTTCACGGCCGG 60.742 63.158 31.76 18.67 0.00 6.13
135 136 1.292223 CTCTCTTTTCACGGCCGGA 59.708 57.895 31.76 20.83 0.00 5.14
136 137 0.320421 CTCTCTTTTCACGGCCGGAA 60.320 55.000 31.76 25.29 0.00 4.30
137 138 0.107081 TCTCTTTTCACGGCCGGAAA 59.893 50.000 31.76 29.03 32.74 3.13
138 139 0.948678 CTCTTTTCACGGCCGGAAAA 59.051 50.000 33.08 33.08 40.76 2.29
139 140 1.539827 CTCTTTTCACGGCCGGAAAAT 59.460 47.619 34.30 15.35 41.76 1.82
140 141 1.538075 TCTTTTCACGGCCGGAAAATC 59.462 47.619 34.30 0.00 41.76 2.17
141 142 0.599060 TTTTCACGGCCGGAAAATCC 59.401 50.000 32.48 0.00 38.82 3.01
151 152 1.504900 GGAAAATCCGGTCCGTTGC 59.495 57.895 11.06 0.00 0.00 4.17
152 153 0.958876 GGAAAATCCGGTCCGTTGCT 60.959 55.000 11.06 0.00 0.00 3.91
153 154 0.168128 GAAAATCCGGTCCGTTGCTG 59.832 55.000 11.06 0.00 0.00 4.41
154 155 0.536460 AAAATCCGGTCCGTTGCTGT 60.536 50.000 11.06 0.00 0.00 4.40
155 156 0.322322 AAATCCGGTCCGTTGCTGTA 59.678 50.000 11.06 0.00 0.00 2.74
156 157 0.539986 AATCCGGTCCGTTGCTGTAT 59.460 50.000 11.06 0.00 0.00 2.29
157 158 0.179084 ATCCGGTCCGTTGCTGTATG 60.179 55.000 11.06 0.00 0.00 2.39
158 159 1.216977 CCGGTCCGTTGCTGTATGA 59.783 57.895 11.06 0.00 0.00 2.15
159 160 0.179084 CCGGTCCGTTGCTGTATGAT 60.179 55.000 11.06 0.00 0.00 2.45
160 161 0.930310 CGGTCCGTTGCTGTATGATG 59.070 55.000 2.08 0.00 0.00 3.07
161 162 1.739035 CGGTCCGTTGCTGTATGATGT 60.739 52.381 2.08 0.00 0.00 3.06
162 163 2.480587 CGGTCCGTTGCTGTATGATGTA 60.481 50.000 2.08 0.00 0.00 2.29
163 164 2.864343 GGTCCGTTGCTGTATGATGTAC 59.136 50.000 0.00 0.00 0.00 2.90
164 165 3.517602 GTCCGTTGCTGTATGATGTACA 58.482 45.455 0.00 0.00 0.00 2.90
165 166 3.306166 GTCCGTTGCTGTATGATGTACAC 59.694 47.826 0.00 0.00 0.00 2.90
166 167 2.607635 CCGTTGCTGTATGATGTACACC 59.392 50.000 0.00 0.00 0.00 4.16
167 168 3.521560 CGTTGCTGTATGATGTACACCT 58.478 45.455 0.00 0.00 0.00 4.00
168 169 3.932710 CGTTGCTGTATGATGTACACCTT 59.067 43.478 0.00 0.00 0.00 3.50
169 170 4.391830 CGTTGCTGTATGATGTACACCTTT 59.608 41.667 0.00 0.00 0.00 3.11
170 171 5.106712 CGTTGCTGTATGATGTACACCTTTT 60.107 40.000 0.00 0.00 0.00 2.27
171 172 6.314784 GTTGCTGTATGATGTACACCTTTTC 58.685 40.000 0.00 0.00 0.00 2.29
172 173 4.941263 TGCTGTATGATGTACACCTTTTCC 59.059 41.667 0.00 0.00 0.00 3.13
173 174 5.186198 GCTGTATGATGTACACCTTTTCCT 58.814 41.667 0.00 0.00 0.00 3.36
174 175 5.065218 GCTGTATGATGTACACCTTTTCCTG 59.935 44.000 0.00 0.00 0.00 3.86
175 176 6.121776 TGTATGATGTACACCTTTTCCTGT 57.878 37.500 0.00 0.00 0.00 4.00
176 177 7.247456 TGTATGATGTACACCTTTTCCTGTA 57.753 36.000 0.00 0.00 0.00 2.74
177 178 7.857456 TGTATGATGTACACCTTTTCCTGTAT 58.143 34.615 0.00 0.00 0.00 2.29
178 179 8.325787 TGTATGATGTACACCTTTTCCTGTATT 58.674 33.333 0.00 0.00 0.00 1.89
179 180 9.174166 GTATGATGTACACCTTTTCCTGTATTT 57.826 33.333 0.00 0.00 0.00 1.40
180 181 7.447374 TGATGTACACCTTTTCCTGTATTTG 57.553 36.000 0.00 0.00 0.00 2.32
181 182 6.432783 TGATGTACACCTTTTCCTGTATTTGG 59.567 38.462 0.00 0.00 0.00 3.28
182 183 5.697067 TGTACACCTTTTCCTGTATTTGGT 58.303 37.500 0.00 0.00 0.00 3.67
183 184 5.766174 TGTACACCTTTTCCTGTATTTGGTC 59.234 40.000 0.00 0.00 0.00 4.02
184 185 4.149598 ACACCTTTTCCTGTATTTGGTCC 58.850 43.478 0.00 0.00 0.00 4.46
185 186 4.141018 ACACCTTTTCCTGTATTTGGTCCT 60.141 41.667 0.00 0.00 0.00 3.85
186 187 5.073965 ACACCTTTTCCTGTATTTGGTCCTA 59.926 40.000 0.00 0.00 0.00 2.94
187 188 5.648092 CACCTTTTCCTGTATTTGGTCCTAG 59.352 44.000 0.00 0.00 0.00 3.02
188 189 5.193679 CCTTTTCCTGTATTTGGTCCTAGG 58.806 45.833 0.82 0.82 0.00 3.02
189 190 5.045140 CCTTTTCCTGTATTTGGTCCTAGGA 60.045 44.000 7.62 7.62 32.81 2.94
190 191 5.431179 TTTCCTGTATTTGGTCCTAGGAC 57.569 43.478 30.72 30.72 43.87 3.85
199 200 2.605347 GTCCTAGGACCTGAACCCC 58.395 63.158 28.87 2.49 39.08 4.95
200 201 0.981801 GTCCTAGGACCTGAACCCCC 60.982 65.000 28.87 1.72 39.08 5.40
201 202 1.160289 TCCTAGGACCTGAACCCCCT 61.160 60.000 7.62 0.00 0.00 4.79
202 203 0.691413 CCTAGGACCTGAACCCCCTC 60.691 65.000 1.05 0.00 0.00 4.30
203 204 0.042731 CTAGGACCTGAACCCCCTCA 59.957 60.000 3.53 0.00 0.00 3.86
204 205 0.722676 TAGGACCTGAACCCCCTCAT 59.277 55.000 3.53 0.00 0.00 2.90
205 206 0.916358 AGGACCTGAACCCCCTCATG 60.916 60.000 0.00 0.00 0.00 3.07
206 207 1.208165 GGACCTGAACCCCCTCATGT 61.208 60.000 0.00 0.00 0.00 3.21
207 208 0.698818 GACCTGAACCCCCTCATGTT 59.301 55.000 0.00 0.00 0.00 2.71
208 209 1.075536 GACCTGAACCCCCTCATGTTT 59.924 52.381 0.00 0.00 0.00 2.83
209 210 1.503347 ACCTGAACCCCCTCATGTTTT 59.497 47.619 0.00 0.00 0.00 2.43
210 211 2.090775 ACCTGAACCCCCTCATGTTTTT 60.091 45.455 0.00 0.00 0.00 1.94
211 212 2.562738 CCTGAACCCCCTCATGTTTTTC 59.437 50.000 0.00 0.00 0.00 2.29
212 213 3.500343 CTGAACCCCCTCATGTTTTTCT 58.500 45.455 0.00 0.00 0.00 2.52
213 214 3.496331 TGAACCCCCTCATGTTTTTCTC 58.504 45.455 0.00 0.00 0.00 2.87
214 215 2.604912 ACCCCCTCATGTTTTTCTCC 57.395 50.000 0.00 0.00 0.00 3.71
215 216 1.077169 ACCCCCTCATGTTTTTCTCCC 59.923 52.381 0.00 0.00 0.00 4.30
216 217 1.077005 CCCCCTCATGTTTTTCTCCCA 59.923 52.381 0.00 0.00 0.00 4.37
217 218 2.171003 CCCCTCATGTTTTTCTCCCAC 58.829 52.381 0.00 0.00 0.00 4.61
218 219 2.225117 CCCCTCATGTTTTTCTCCCACT 60.225 50.000 0.00 0.00 0.00 4.00
219 220 2.821969 CCCTCATGTTTTTCTCCCACTG 59.178 50.000 0.00 0.00 0.00 3.66
220 221 2.229784 CCTCATGTTTTTCTCCCACTGC 59.770 50.000 0.00 0.00 0.00 4.40
221 222 3.152341 CTCATGTTTTTCTCCCACTGCT 58.848 45.455 0.00 0.00 0.00 4.24
222 223 3.565307 TCATGTTTTTCTCCCACTGCTT 58.435 40.909 0.00 0.00 0.00 3.91
223 224 3.569701 TCATGTTTTTCTCCCACTGCTTC 59.430 43.478 0.00 0.00 0.00 3.86
224 225 2.306847 TGTTTTTCTCCCACTGCTTCC 58.693 47.619 0.00 0.00 0.00 3.46
225 226 2.091885 TGTTTTTCTCCCACTGCTTCCT 60.092 45.455 0.00 0.00 0.00 3.36
226 227 2.276732 TTTTCTCCCACTGCTTCCTG 57.723 50.000 0.00 0.00 0.00 3.86
227 228 0.250901 TTTCTCCCACTGCTTCCTGC 60.251 55.000 0.00 0.00 43.25 4.85
228 229 1.130054 TTCTCCCACTGCTTCCTGCT 61.130 55.000 0.00 0.00 43.37 4.24
229 230 0.252239 TCTCCCACTGCTTCCTGCTA 60.252 55.000 0.00 0.00 43.37 3.49
230 231 0.615331 CTCCCACTGCTTCCTGCTAA 59.385 55.000 0.00 0.00 43.37 3.09
231 232 1.211457 CTCCCACTGCTTCCTGCTAAT 59.789 52.381 0.00 0.00 43.37 1.73
232 233 1.065199 TCCCACTGCTTCCTGCTAATG 60.065 52.381 0.00 0.00 43.37 1.90
233 234 0.737219 CCACTGCTTCCTGCTAATGC 59.263 55.000 0.00 0.00 43.37 3.56
247 248 2.606272 GCTAATGCAATGAAAAGCCAGC 59.394 45.455 0.00 0.00 39.41 4.85
248 249 2.843401 AATGCAATGAAAAGCCAGCA 57.157 40.000 0.00 0.00 36.34 4.41
249 250 2.843401 ATGCAATGAAAAGCCAGCAA 57.157 40.000 0.00 0.00 35.45 3.91
250 251 2.843401 TGCAATGAAAAGCCAGCAAT 57.157 40.000 0.00 0.00 0.00 3.56
251 252 3.128852 TGCAATGAAAAGCCAGCAATT 57.871 38.095 0.00 0.00 0.00 2.32
252 253 2.809119 TGCAATGAAAAGCCAGCAATTG 59.191 40.909 0.00 0.00 0.00 2.32
253 254 2.413634 GCAATGAAAAGCCAGCAATTGC 60.414 45.455 23.05 23.05 42.49 3.56
268 269 5.927954 GCAATTGCTGGATCTTTCAAAAA 57.072 34.783 23.21 0.00 38.21 1.94
269 270 5.923665 GCAATTGCTGGATCTTTCAAAAAG 58.076 37.500 23.21 0.00 38.21 2.27
270 271 5.697633 GCAATTGCTGGATCTTTCAAAAAGA 59.302 36.000 23.21 4.72 38.21 2.52
271 272 6.203338 GCAATTGCTGGATCTTTCAAAAAGAA 59.797 34.615 23.21 0.00 38.21 2.52
272 273 7.094933 GCAATTGCTGGATCTTTCAAAAAGAAT 60.095 33.333 23.21 0.00 35.50 2.40
273 274 9.426837 CAATTGCTGGATCTTTCAAAAAGAATA 57.573 29.630 6.25 0.00 35.83 1.75
276 277 8.816640 TGCTGGATCTTTCAAAAAGAATAAAC 57.183 30.769 6.25 0.00 35.83 2.01
277 278 8.420222 TGCTGGATCTTTCAAAAAGAATAAACA 58.580 29.630 6.25 1.40 35.83 2.83
278 279 8.703336 GCTGGATCTTTCAAAAAGAATAAACAC 58.297 33.333 6.25 0.00 35.83 3.32
279 280 9.971922 CTGGATCTTTCAAAAAGAATAAACACT 57.028 29.630 6.25 0.00 35.83 3.55
284 285 9.498307 TCTTTCAAAAAGAATAAACACTTCGTC 57.502 29.630 0.00 0.00 35.83 4.20
285 286 7.886191 TTCAAAAAGAATAAACACTTCGTCG 57.114 32.000 0.00 0.00 0.00 5.12
286 287 7.007313 TCAAAAAGAATAAACACTTCGTCGT 57.993 32.000 0.00 0.00 0.00 4.34
287 288 7.465989 TCAAAAAGAATAAACACTTCGTCGTT 58.534 30.769 0.00 0.00 0.00 3.85
288 289 7.964011 TCAAAAAGAATAAACACTTCGTCGTTT 59.036 29.630 0.00 0.00 38.76 3.60
289 290 7.887752 AAAAGAATAAACACTTCGTCGTTTC 57.112 32.000 0.00 0.00 36.72 2.78
290 291 5.587033 AGAATAAACACTTCGTCGTTTCC 57.413 39.130 0.00 0.00 36.72 3.13
291 292 4.450080 AGAATAAACACTTCGTCGTTTCCC 59.550 41.667 0.00 0.00 36.72 3.97
292 293 2.027003 AAACACTTCGTCGTTTCCCA 57.973 45.000 0.00 0.00 29.44 4.37
293 294 2.027003 AACACTTCGTCGTTTCCCAA 57.973 45.000 0.00 0.00 0.00 4.12
294 295 2.027003 ACACTTCGTCGTTTCCCAAA 57.973 45.000 0.00 0.00 0.00 3.28
295 296 2.358015 ACACTTCGTCGTTTCCCAAAA 58.642 42.857 0.00 0.00 0.00 2.44
296 297 2.748532 ACACTTCGTCGTTTCCCAAAAA 59.251 40.909 0.00 0.00 0.00 1.94
319 320 8.506140 AAAATTACATTCGTGTTGAAGACATG 57.494 30.769 0.00 0.00 44.94 3.21
327 328 4.890378 CGTGTTGAAGACATGAAGCTATG 58.110 43.478 0.00 0.00 46.20 2.23
328 329 4.201753 CGTGTTGAAGACATGAAGCTATGG 60.202 45.833 0.00 0.00 46.20 2.74
329 330 4.937620 GTGTTGAAGACATGAAGCTATGGA 59.062 41.667 0.00 0.00 41.10 3.41
330 331 5.587844 GTGTTGAAGACATGAAGCTATGGAT 59.412 40.000 0.00 0.00 41.10 3.41
331 332 6.094603 GTGTTGAAGACATGAAGCTATGGATT 59.905 38.462 0.00 0.00 41.10 3.01
332 333 6.660521 TGTTGAAGACATGAAGCTATGGATTT 59.339 34.615 0.00 0.00 32.00 2.17
333 334 6.688637 TGAAGACATGAAGCTATGGATTTG 57.311 37.500 0.00 0.00 32.32 2.32
334 335 5.591472 TGAAGACATGAAGCTATGGATTTGG 59.409 40.000 0.00 0.00 32.32 3.28
335 336 5.121380 AGACATGAAGCTATGGATTTGGT 57.879 39.130 0.00 0.00 32.32 3.67
336 337 4.885907 AGACATGAAGCTATGGATTTGGTG 59.114 41.667 0.00 0.00 32.32 4.17
337 338 4.858850 ACATGAAGCTATGGATTTGGTGA 58.141 39.130 0.00 0.00 32.32 4.02
338 339 5.452255 ACATGAAGCTATGGATTTGGTGAT 58.548 37.500 0.00 0.00 32.32 3.06
339 340 5.301045 ACATGAAGCTATGGATTTGGTGATG 59.699 40.000 0.00 0.00 32.32 3.07
340 341 5.114764 TGAAGCTATGGATTTGGTGATGA 57.885 39.130 0.00 0.00 0.00 2.92
341 342 5.508567 TGAAGCTATGGATTTGGTGATGAA 58.491 37.500 0.00 0.00 0.00 2.57
342 343 6.131264 TGAAGCTATGGATTTGGTGATGAAT 58.869 36.000 0.00 0.00 0.00 2.57
343 344 7.289310 TGAAGCTATGGATTTGGTGATGAATA 58.711 34.615 0.00 0.00 0.00 1.75
344 345 7.946219 TGAAGCTATGGATTTGGTGATGAATAT 59.054 33.333 0.00 0.00 0.00 1.28
345 346 7.934855 AGCTATGGATTTGGTGATGAATATC 57.065 36.000 0.00 0.00 0.00 1.63
346 347 7.464273 AGCTATGGATTTGGTGATGAATATCA 58.536 34.615 0.00 0.00 40.92 2.15
347 348 7.610692 AGCTATGGATTTGGTGATGAATATCAG 59.389 37.037 0.00 0.00 43.66 2.90
348 349 7.392673 GCTATGGATTTGGTGATGAATATCAGT 59.607 37.037 0.00 0.00 43.66 3.41
349 350 9.948964 CTATGGATTTGGTGATGAATATCAGTA 57.051 33.333 0.00 0.00 43.66 2.74
350 351 8.859236 ATGGATTTGGTGATGAATATCAGTAG 57.141 34.615 0.00 0.00 43.66 2.57
351 352 8.033178 TGGATTTGGTGATGAATATCAGTAGA 57.967 34.615 0.00 0.00 43.66 2.59
352 353 7.933577 TGGATTTGGTGATGAATATCAGTAGAC 59.066 37.037 0.00 0.00 43.66 2.59
353 354 7.933577 GGATTTGGTGATGAATATCAGTAGACA 59.066 37.037 0.00 0.00 43.66 3.41
354 355 8.668510 ATTTGGTGATGAATATCAGTAGACAC 57.331 34.615 0.00 0.00 43.66 3.67
355 356 6.161855 TGGTGATGAATATCAGTAGACACC 57.838 41.667 0.00 0.00 43.66 4.16
356 357 5.221244 TGGTGATGAATATCAGTAGACACCG 60.221 44.000 0.00 0.00 43.66 4.94
357 358 5.009710 GGTGATGAATATCAGTAGACACCGA 59.990 44.000 0.00 0.00 43.66 4.69
358 359 5.915758 GTGATGAATATCAGTAGACACCGAC 59.084 44.000 0.00 0.00 43.66 4.79
359 360 5.592688 TGATGAATATCAGTAGACACCGACA 59.407 40.000 0.00 0.00 38.37 4.35
360 361 5.907866 TGAATATCAGTAGACACCGACAA 57.092 39.130 0.00 0.00 0.00 3.18
361 362 6.275494 TGAATATCAGTAGACACCGACAAA 57.725 37.500 0.00 0.00 0.00 2.83
362 363 6.693466 TGAATATCAGTAGACACCGACAAAA 58.307 36.000 0.00 0.00 0.00 2.44
363 364 7.156000 TGAATATCAGTAGACACCGACAAAAA 58.844 34.615 0.00 0.00 0.00 1.94
461 462 3.616284 TCGATAGAGAGAGCGGGAG 57.384 57.895 0.00 0.00 42.67 4.30
462 463 0.759959 TCGATAGAGAGAGCGGGAGT 59.240 55.000 0.00 0.00 42.67 3.85
463 464 0.871722 CGATAGAGAGAGCGGGAGTG 59.128 60.000 0.00 0.00 39.76 3.51
464 465 1.541452 CGATAGAGAGAGCGGGAGTGA 60.541 57.143 0.00 0.00 39.76 3.41
465 466 2.151202 GATAGAGAGAGCGGGAGTGAG 58.849 57.143 0.00 0.00 0.00 3.51
466 467 1.205055 TAGAGAGAGCGGGAGTGAGA 58.795 55.000 0.00 0.00 0.00 3.27
467 468 0.107214 AGAGAGAGCGGGAGTGAGAG 60.107 60.000 0.00 0.00 0.00 3.20
468 469 1.077068 AGAGAGCGGGAGTGAGAGG 60.077 63.158 0.00 0.00 0.00 3.69
469 470 1.077357 GAGAGCGGGAGTGAGAGGA 60.077 63.158 0.00 0.00 0.00 3.71
470 471 1.077068 AGAGCGGGAGTGAGAGGAG 60.077 63.158 0.00 0.00 0.00 3.69
471 472 1.077357 GAGCGGGAGTGAGAGGAGA 60.077 63.158 0.00 0.00 0.00 3.71
472 473 1.379309 AGCGGGAGTGAGAGGAGAC 60.379 63.158 0.00 0.00 0.00 3.36
473 474 1.679305 GCGGGAGTGAGAGGAGACA 60.679 63.158 0.00 0.00 0.00 3.41
474 475 1.662438 GCGGGAGTGAGAGGAGACAG 61.662 65.000 0.00 0.00 0.00 3.51
475 476 0.322997 CGGGAGTGAGAGGAGACAGT 60.323 60.000 0.00 0.00 0.00 3.55
476 477 1.181786 GGGAGTGAGAGGAGACAGTG 58.818 60.000 0.00 0.00 0.00 3.66
477 478 1.181786 GGAGTGAGAGGAGACAGTGG 58.818 60.000 0.00 0.00 0.00 4.00
478 479 1.181786 GAGTGAGAGGAGACAGTGGG 58.818 60.000 0.00 0.00 0.00 4.61
479 480 0.252012 AGTGAGAGGAGACAGTGGGG 60.252 60.000 0.00 0.00 0.00 4.96
480 481 0.251832 GTGAGAGGAGACAGTGGGGA 60.252 60.000 0.00 0.00 0.00 4.81
481 482 0.487325 TGAGAGGAGACAGTGGGGAA 59.513 55.000 0.00 0.00 0.00 3.97
482 483 1.079490 TGAGAGGAGACAGTGGGGAAT 59.921 52.381 0.00 0.00 0.00 3.01
483 484 1.484240 GAGAGGAGACAGTGGGGAATG 59.516 57.143 0.00 0.00 0.00 2.67
484 485 0.543749 GAGGAGACAGTGGGGAATGG 59.456 60.000 0.00 0.00 0.00 3.16
485 486 0.119155 AGGAGACAGTGGGGAATGGA 59.881 55.000 0.00 0.00 0.00 3.41
486 487 1.216990 GGAGACAGTGGGGAATGGAT 58.783 55.000 0.00 0.00 0.00 3.41
487 488 1.133976 GGAGACAGTGGGGAATGGATG 60.134 57.143 0.00 0.00 0.00 3.51
488 489 0.921896 AGACAGTGGGGAATGGATGG 59.078 55.000 0.00 0.00 0.00 3.51
489 490 0.625849 GACAGTGGGGAATGGATGGT 59.374 55.000 0.00 0.00 0.00 3.55
490 491 0.332632 ACAGTGGGGAATGGATGGTG 59.667 55.000 0.00 0.00 0.00 4.17
491 492 0.625316 CAGTGGGGAATGGATGGTGA 59.375 55.000 0.00 0.00 0.00 4.02
492 493 1.005805 CAGTGGGGAATGGATGGTGAA 59.994 52.381 0.00 0.00 0.00 3.18
493 494 1.715931 AGTGGGGAATGGATGGTGAAA 59.284 47.619 0.00 0.00 0.00 2.69
494 495 2.111613 AGTGGGGAATGGATGGTGAAAA 59.888 45.455 0.00 0.00 0.00 2.29
495 496 2.903135 GTGGGGAATGGATGGTGAAAAA 59.097 45.455 0.00 0.00 0.00 1.94
513 514 1.594331 AAAAAGGACCACGCTCTCAC 58.406 50.000 0.00 0.00 0.00 3.51
514 515 0.468226 AAAAGGACCACGCTCTCACA 59.532 50.000 0.00 0.00 0.00 3.58
515 516 0.687354 AAAGGACCACGCTCTCACAT 59.313 50.000 0.00 0.00 0.00 3.21
516 517 1.557099 AAGGACCACGCTCTCACATA 58.443 50.000 0.00 0.00 0.00 2.29
517 518 0.818296 AGGACCACGCTCTCACATAC 59.182 55.000 0.00 0.00 0.00 2.39
518 519 0.179108 GGACCACGCTCTCACATACC 60.179 60.000 0.00 0.00 0.00 2.73
519 520 0.179108 GACCACGCTCTCACATACCC 60.179 60.000 0.00 0.00 0.00 3.69
520 521 0.902984 ACCACGCTCTCACATACCCA 60.903 55.000 0.00 0.00 0.00 4.51
521 522 0.465705 CCACGCTCTCACATACCCAT 59.534 55.000 0.00 0.00 0.00 4.00
522 523 1.575244 CACGCTCTCACATACCCATG 58.425 55.000 0.00 0.00 38.21 3.66
523 524 0.179073 ACGCTCTCACATACCCATGC 60.179 55.000 0.00 0.00 35.39 4.06
524 525 1.217585 CGCTCTCACATACCCATGCG 61.218 60.000 0.00 0.00 35.39 4.73
525 526 0.882042 GCTCTCACATACCCATGCGG 60.882 60.000 0.00 0.00 35.39 5.69
526 527 0.882042 CTCTCACATACCCATGCGGC 60.882 60.000 0.00 0.00 35.39 6.53
527 528 1.893808 CTCACATACCCATGCGGCC 60.894 63.158 0.00 0.00 35.39 6.13
528 529 2.124362 CACATACCCATGCGGCCA 60.124 61.111 2.24 0.00 35.39 5.36
529 530 2.188829 CACATACCCATGCGGCCAG 61.189 63.158 2.24 0.00 35.39 4.85
530 531 2.595463 CATACCCATGCGGCCAGG 60.595 66.667 2.24 0.00 33.26 4.45
531 532 4.586235 ATACCCATGCGGCCAGGC 62.586 66.667 1.26 1.26 33.26 4.85
541 542 3.096495 GGCCAGGCCCAGATACCA 61.096 66.667 21.62 0.00 44.06 3.25
542 543 2.689691 GGCCAGGCCCAGATACCAA 61.690 63.158 21.62 0.00 44.06 3.67
543 544 1.152881 GCCAGGCCCAGATACCAAG 60.153 63.158 0.00 0.00 0.00 3.61
544 545 1.926426 GCCAGGCCCAGATACCAAGT 61.926 60.000 0.00 0.00 0.00 3.16
545 546 0.181350 CCAGGCCCAGATACCAAGTC 59.819 60.000 0.00 0.00 0.00 3.01
546 547 0.911769 CAGGCCCAGATACCAAGTCA 59.088 55.000 0.00 0.00 0.00 3.41
547 548 1.281867 CAGGCCCAGATACCAAGTCAA 59.718 52.381 0.00 0.00 0.00 3.18
548 549 1.282157 AGGCCCAGATACCAAGTCAAC 59.718 52.381 0.00 0.00 0.00 3.18
549 550 1.004277 GGCCCAGATACCAAGTCAACA 59.996 52.381 0.00 0.00 0.00 3.33
550 551 2.359900 GCCCAGATACCAAGTCAACAG 58.640 52.381 0.00 0.00 0.00 3.16
551 552 2.027192 GCCCAGATACCAAGTCAACAGA 60.027 50.000 0.00 0.00 0.00 3.41
552 553 3.559171 GCCCAGATACCAAGTCAACAGAA 60.559 47.826 0.00 0.00 0.00 3.02
553 554 4.651778 CCCAGATACCAAGTCAACAGAAA 58.348 43.478 0.00 0.00 0.00 2.52
554 555 4.455877 CCCAGATACCAAGTCAACAGAAAC 59.544 45.833 0.00 0.00 0.00 2.78
555 556 4.455877 CCAGATACCAAGTCAACAGAAACC 59.544 45.833 0.00 0.00 0.00 3.27
556 557 4.152402 CAGATACCAAGTCAACAGAAACCG 59.848 45.833 0.00 0.00 0.00 4.44
557 558 2.702592 ACCAAGTCAACAGAAACCGA 57.297 45.000 0.00 0.00 0.00 4.69
558 559 2.561569 ACCAAGTCAACAGAAACCGAG 58.438 47.619 0.00 0.00 0.00 4.63
559 560 2.169769 ACCAAGTCAACAGAAACCGAGA 59.830 45.455 0.00 0.00 0.00 4.04
560 561 2.544267 CCAAGTCAACAGAAACCGAGAC 59.456 50.000 0.00 0.00 0.00 3.36
561 562 3.194861 CAAGTCAACAGAAACCGAGACA 58.805 45.455 0.00 0.00 0.00 3.41
562 563 2.822764 AGTCAACAGAAACCGAGACAC 58.177 47.619 0.00 0.00 0.00 3.67
563 564 1.521423 GTCAACAGAAACCGAGACACG 59.479 52.381 0.00 0.00 42.18 4.49
564 565 1.135527 TCAACAGAAACCGAGACACGT 59.864 47.619 0.00 0.00 40.78 4.49
565 566 1.257936 CAACAGAAACCGAGACACGTG 59.742 52.381 15.48 15.48 40.78 4.49
566 567 0.742505 ACAGAAACCGAGACACGTGA 59.257 50.000 25.01 0.00 40.78 4.35
567 568 1.135527 ACAGAAACCGAGACACGTGAA 59.864 47.619 25.01 0.00 40.78 3.18
568 569 2.198406 CAGAAACCGAGACACGTGAAA 58.802 47.619 25.01 0.00 40.78 2.69
575 576 3.924686 ACCGAGACACGTGAAAATATGTC 59.075 43.478 25.01 6.48 41.47 3.06
624 625 1.751927 GACGAGCGGTTCCTAGGGA 60.752 63.158 9.46 0.00 0.00 4.20
627 628 1.325355 CGAGCGGTTCCTAGGGATTA 58.675 55.000 9.46 0.00 0.00 1.75
650 651 1.139058 CGAACTCTGGATCCCCGATTT 59.861 52.381 9.90 6.38 34.29 2.17
696 698 1.032114 CCAATTCCGGCTGTCCCTTC 61.032 60.000 0.00 0.00 0.00 3.46
843 859 0.175989 CTAGTGAGGCGGGAGGTTTC 59.824 60.000 0.00 0.00 0.00 2.78
897 914 1.852157 TGGTGATTGCCCTCTGGGT 60.852 57.895 4.42 0.00 46.51 4.51
951 973 2.758852 TTTCTAGCCCGTCCCCCACT 62.759 60.000 0.00 0.00 0.00 4.00
997 1019 0.179100 CTCGGCGGATCATGTTGAGT 60.179 55.000 7.21 0.00 0.00 3.41
1034 1056 2.354773 GCTTACGGCGATCGAGGG 60.355 66.667 21.57 9.14 42.43 4.30
1072 1094 3.773667 GGATGATGAGGATGAGGCTGATA 59.226 47.826 0.00 0.00 0.00 2.15
1092 1114 2.359850 GTGGCTCCGGATTGTGCA 60.360 61.111 3.57 0.00 0.00 4.57
1136 1158 2.174210 CCAACATCCTCCACATCCAGAT 59.826 50.000 0.00 0.00 0.00 2.90
1228 1251 4.693095 ACGTTTTTGTTGCTGAATTTGGTT 59.307 33.333 0.00 0.00 0.00 3.67
1395 1426 1.893062 GCCAAGGTTGATGAAGGCC 59.107 57.895 0.00 0.00 36.17 5.19
1440 1471 7.736447 CAAGCCCATTGGTAAAATTGTTAAA 57.264 32.000 1.20 0.00 35.08 1.52
1500 1531 7.451877 GGATACATGAGGGTTAGAGTTGAGATA 59.548 40.741 0.00 0.00 0.00 1.98
1501 1532 8.964533 ATACATGAGGGTTAGAGTTGAGATAT 57.035 34.615 0.00 0.00 0.00 1.63
1537 1576 1.013596 TGTTTGCTGTGACTTCGGTG 58.986 50.000 0.00 0.00 0.00 4.94
1600 1639 2.747436 CTGCCTTTTCACTGCTTTTCC 58.253 47.619 0.00 0.00 0.00 3.13
1602 1641 2.765699 TGCCTTTTCACTGCTTTTCCTT 59.234 40.909 0.00 0.00 0.00 3.36
1610 1649 2.627699 CACTGCTTTTCCTTTGGGCTTA 59.372 45.455 0.00 0.00 0.00 3.09
1620 1659 2.009774 CTTTGGGCTTATCGGTCACTG 58.990 52.381 0.00 0.00 0.00 3.66
1627 1666 2.259618 CTTATCGGTCACTGTTCGGTG 58.740 52.381 5.51 5.51 38.44 4.94
1697 1737 1.271379 TGGCAAAGAAGCTCTGCATTG 59.729 47.619 10.91 4.30 37.83 2.82
1730 1770 1.404035 ACAAAAAGTCTGGTGGTTCGC 59.596 47.619 0.00 0.00 0.00 4.70
1928 1970 3.189770 AAGGGAGGGGAAGGTCGGT 62.190 63.158 0.00 0.00 0.00 4.69
1932 1974 1.199425 GGAGGGGAAGGTCGGTTTCT 61.199 60.000 0.00 0.00 0.00 2.52
1935 1977 0.978907 GGGGAAGGTCGGTTTCTACA 59.021 55.000 0.00 0.00 0.00 2.74
1937 1979 2.420642 GGGAAGGTCGGTTTCTACAAC 58.579 52.381 0.00 0.00 0.00 3.32
1945 1987 1.346722 CGGTTTCTACAACCAGGGAGT 59.653 52.381 4.68 0.00 40.28 3.85
1954 1996 1.070134 CAACCAGGGAGTTGTTCTCGA 59.930 52.381 0.00 0.00 43.60 4.04
1965 2007 1.924731 TGTTCTCGAGTGGTCAGGAT 58.075 50.000 13.13 0.00 0.00 3.24
1968 2010 3.830178 TGTTCTCGAGTGGTCAGGATAAA 59.170 43.478 13.13 0.00 0.00 1.40
1992 2034 1.474478 GGCACATCGAGACAGAAGAGA 59.526 52.381 0.00 0.00 0.00 3.10
2020 2062 3.082579 AAGTCTCTCCCATCGGCGC 62.083 63.158 0.00 0.00 0.00 6.53
2031 2073 4.193334 TCGGCGCCGATCAGTGAG 62.193 66.667 45.37 16.92 44.01 3.51
2044 2086 2.032681 GTGAGCAGGAACCGGCTT 59.967 61.111 18.18 0.00 46.66 4.35
2047 2089 0.618458 TGAGCAGGAACCGGCTTATT 59.382 50.000 18.18 0.00 46.66 1.40
2148 2211 2.986413 CCTCGATCGGCGGATCCT 60.986 66.667 23.88 0.00 45.16 3.24
2158 2221 3.536917 CGGATCCTGTGGCGGCTA 61.537 66.667 11.43 0.00 0.00 3.93
2211 2274 2.038814 TTGCTGGAACTGTCGAGGCA 62.039 55.000 0.00 0.00 30.63 4.75
2335 2398 7.505585 AGTTAAGAATTTCATGTGGTCTTTGGA 59.494 33.333 0.00 0.00 31.28 3.53
2349 2413 4.336713 GGTCTTTGGATATTCTGGCTGTTC 59.663 45.833 0.00 0.00 0.00 3.18
2368 2432 1.824224 CTGCTGTCAGCTGTGAGGGA 61.824 60.000 24.76 1.82 42.97 4.20
2372 2436 0.394192 TGTCAGCTGTGAGGGACTTG 59.606 55.000 14.67 0.00 41.55 3.16
2385 2449 1.152756 GACTTGGTGGTGGCCTTGT 60.153 57.895 3.32 0.00 0.00 3.16
2452 2516 5.227569 ACAAGAGGTGTATTGATGTCACA 57.772 39.130 0.00 0.00 39.29 3.58
2459 2523 4.563580 GGTGTATTGATGTCACAGTCCAGT 60.564 45.833 0.00 0.00 34.27 4.00
2473 2538 0.044092 TCCAGTTGGATGAGGGCCTA 59.956 55.000 5.73 0.00 39.78 3.93
2492 2557 2.283173 CCTGGCGGGCCTCTTTTT 60.283 61.111 11.55 0.00 36.94 1.94
2536 2601 4.683400 GCGGATAGATCTCACTTTTGGGAA 60.683 45.833 0.00 0.00 35.19 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.546267 AGATGTCACCTGGCTCTGGT 60.546 55.000 0.00 0.00 36.11 4.00
1 2 0.617413 AAGATGTCACCTGGCTCTGG 59.383 55.000 0.00 0.00 0.00 3.86
2 3 1.277273 TGAAGATGTCACCTGGCTCTG 59.723 52.381 0.00 0.00 0.00 3.35
3 4 1.554160 CTGAAGATGTCACCTGGCTCT 59.446 52.381 0.00 0.00 31.13 4.09
4 5 1.406614 CCTGAAGATGTCACCTGGCTC 60.407 57.143 0.00 0.00 31.13 4.70
5 6 0.617413 CCTGAAGATGTCACCTGGCT 59.383 55.000 0.00 0.00 31.13 4.75
6 7 0.393537 CCCTGAAGATGTCACCTGGC 60.394 60.000 0.00 0.00 31.13 4.85
7 8 0.393537 GCCCTGAAGATGTCACCTGG 60.394 60.000 0.00 0.00 31.13 4.45
8 9 0.393537 GGCCCTGAAGATGTCACCTG 60.394 60.000 0.00 0.00 31.13 4.00
9 10 0.842030 TGGCCCTGAAGATGTCACCT 60.842 55.000 0.00 0.00 31.13 4.00
10 11 0.257039 ATGGCCCTGAAGATGTCACC 59.743 55.000 0.00 0.00 31.13 4.02
11 12 1.673168 GATGGCCCTGAAGATGTCAC 58.327 55.000 0.00 0.00 31.13 3.67
12 13 0.178767 CGATGGCCCTGAAGATGTCA 59.821 55.000 0.00 0.00 34.17 3.58
13 14 0.465705 TCGATGGCCCTGAAGATGTC 59.534 55.000 0.00 0.00 0.00 3.06
14 15 0.179000 GTCGATGGCCCTGAAGATGT 59.821 55.000 0.00 0.00 0.00 3.06
15 16 0.178767 TGTCGATGGCCCTGAAGATG 59.821 55.000 0.00 0.00 0.00 2.90
16 17 0.911769 TTGTCGATGGCCCTGAAGAT 59.088 50.000 0.00 0.00 0.00 2.40
17 18 0.036388 GTTGTCGATGGCCCTGAAGA 60.036 55.000 0.00 0.00 0.00 2.87
18 19 0.036010 AGTTGTCGATGGCCCTGAAG 60.036 55.000 0.00 0.00 0.00 3.02
19 20 0.036388 GAGTTGTCGATGGCCCTGAA 60.036 55.000 0.00 0.00 0.00 3.02
20 21 1.596934 GAGTTGTCGATGGCCCTGA 59.403 57.895 0.00 0.00 0.00 3.86
21 22 1.450312 GGAGTTGTCGATGGCCCTG 60.450 63.158 0.00 0.00 0.00 4.45
22 23 2.990479 GGAGTTGTCGATGGCCCT 59.010 61.111 0.00 0.00 0.00 5.19
23 24 2.511600 CGGAGTTGTCGATGGCCC 60.512 66.667 0.00 0.00 0.00 5.80
24 25 2.264794 ACGGAGTTGTCGATGGCC 59.735 61.111 0.00 0.00 37.78 5.36
71 72 3.726144 AGAAGGGGCTCTGCAGGC 61.726 66.667 15.13 15.77 44.78 4.85
72 73 2.271497 CAGAAGGGGCTCTGCAGG 59.729 66.667 15.13 5.82 36.67 4.85
73 74 2.271497 CCAGAAGGGGCTCTGCAG 59.729 66.667 7.63 7.63 41.36 4.41
83 84 1.221840 CACGGTGGATCCCAGAAGG 59.778 63.158 9.90 0.00 32.34 3.46
84 85 0.176680 CTCACGGTGGATCCCAGAAG 59.823 60.000 9.90 0.00 32.34 2.85
85 86 0.252057 TCTCACGGTGGATCCCAGAA 60.252 55.000 9.90 0.00 32.34 3.02
86 87 0.252057 TTCTCACGGTGGATCCCAGA 60.252 55.000 9.90 0.00 32.34 3.86
87 88 0.613260 TTTCTCACGGTGGATCCCAG 59.387 55.000 9.90 4.08 32.34 4.45
88 89 1.060729 TTTTCTCACGGTGGATCCCA 58.939 50.000 9.90 0.00 0.00 4.37
89 90 2.194201 TTTTTCTCACGGTGGATCCC 57.806 50.000 9.90 0.00 0.00 3.85
105 106 5.576774 CGTGAAAAGAGAGGCAAAACTTTTT 59.423 36.000 0.00 0.00 40.85 1.94
106 107 5.102313 CGTGAAAAGAGAGGCAAAACTTTT 58.898 37.500 0.00 0.00 42.57 2.27
107 108 4.440112 CCGTGAAAAGAGAGGCAAAACTTT 60.440 41.667 0.00 0.00 34.67 2.66
108 109 3.066760 CCGTGAAAAGAGAGGCAAAACTT 59.933 43.478 0.00 0.00 0.00 2.66
109 110 2.618709 CCGTGAAAAGAGAGGCAAAACT 59.381 45.455 0.00 0.00 0.00 2.66
110 111 2.858646 GCCGTGAAAAGAGAGGCAAAAC 60.859 50.000 0.00 0.00 46.48 2.43
111 112 1.336755 GCCGTGAAAAGAGAGGCAAAA 59.663 47.619 0.00 0.00 46.48 2.44
112 113 0.951558 GCCGTGAAAAGAGAGGCAAA 59.048 50.000 0.00 0.00 46.48 3.68
113 114 2.629002 GCCGTGAAAAGAGAGGCAA 58.371 52.632 0.00 0.00 46.48 4.52
114 115 4.379174 GCCGTGAAAAGAGAGGCA 57.621 55.556 0.00 0.00 46.48 4.75
115 116 2.391389 CGGCCGTGAAAAGAGAGGC 61.391 63.158 19.50 0.00 46.51 4.70
116 117 1.741770 CCGGCCGTGAAAAGAGAGG 60.742 63.158 26.12 0.00 0.00 3.69
117 118 0.320421 TTCCGGCCGTGAAAAGAGAG 60.320 55.000 26.12 4.17 0.00 3.20
118 119 0.107081 TTTCCGGCCGTGAAAAGAGA 59.893 50.000 28.29 14.15 0.00 3.10
119 120 0.948678 TTTTCCGGCCGTGAAAAGAG 59.051 50.000 32.48 16.12 36.93 2.85
120 121 1.538075 GATTTTCCGGCCGTGAAAAGA 59.462 47.619 35.53 25.25 42.91 2.52
121 122 1.402325 GGATTTTCCGGCCGTGAAAAG 60.402 52.381 35.53 20.38 42.91 2.27
122 123 0.599060 GGATTTTCCGGCCGTGAAAA 59.401 50.000 35.26 35.26 43.56 2.29
123 124 2.259281 GGATTTTCCGGCCGTGAAA 58.741 52.632 27.33 27.33 0.00 2.69
124 125 3.990466 GGATTTTCCGGCCGTGAA 58.010 55.556 26.12 22.90 0.00 3.18
133 134 0.958876 AGCAACGGACCGGATTTTCC 60.959 55.000 20.00 2.91 0.00 3.13
134 135 0.168128 CAGCAACGGACCGGATTTTC 59.832 55.000 20.00 0.00 0.00 2.29
135 136 0.536460 ACAGCAACGGACCGGATTTT 60.536 50.000 20.00 0.00 0.00 1.82
136 137 0.322322 TACAGCAACGGACCGGATTT 59.678 50.000 20.00 0.00 0.00 2.17
137 138 0.539986 ATACAGCAACGGACCGGATT 59.460 50.000 20.00 0.63 0.00 3.01
138 139 0.179084 CATACAGCAACGGACCGGAT 60.179 55.000 20.00 3.40 0.00 4.18
139 140 1.216977 CATACAGCAACGGACCGGA 59.783 57.895 20.00 0.00 0.00 5.14
140 141 0.179084 ATCATACAGCAACGGACCGG 60.179 55.000 20.00 0.00 0.00 5.28
141 142 0.930310 CATCATACAGCAACGGACCG 59.070 55.000 13.61 13.61 0.00 4.79
142 143 2.024176 ACATCATACAGCAACGGACC 57.976 50.000 0.00 0.00 0.00 4.46
143 144 3.306166 GTGTACATCATACAGCAACGGAC 59.694 47.826 0.00 0.00 0.00 4.79
144 145 3.517602 GTGTACATCATACAGCAACGGA 58.482 45.455 0.00 0.00 0.00 4.69
145 146 2.607635 GGTGTACATCATACAGCAACGG 59.392 50.000 0.00 0.00 43.22 4.44
146 147 3.521560 AGGTGTACATCATACAGCAACG 58.478 45.455 9.22 0.00 45.34 4.10
147 148 5.880054 AAAGGTGTACATCATACAGCAAC 57.120 39.130 9.22 0.00 45.34 4.17
148 149 5.414454 GGAAAAGGTGTACATCATACAGCAA 59.586 40.000 9.22 0.00 45.34 3.91
149 150 4.941263 GGAAAAGGTGTACATCATACAGCA 59.059 41.667 9.22 0.00 45.34 4.41
150 151 5.065218 CAGGAAAAGGTGTACATCATACAGC 59.935 44.000 9.22 7.94 43.83 4.40
151 152 6.173339 ACAGGAAAAGGTGTACATCATACAG 58.827 40.000 9.22 0.00 0.00 2.74
152 153 6.121776 ACAGGAAAAGGTGTACATCATACA 57.878 37.500 9.22 0.00 0.00 2.29
153 154 8.732746 AATACAGGAAAAGGTGTACATCATAC 57.267 34.615 9.22 0.00 32.05 2.39
154 155 9.173021 CAAATACAGGAAAAGGTGTACATCATA 57.827 33.333 9.22 0.00 32.05 2.15
155 156 7.122650 CCAAATACAGGAAAAGGTGTACATCAT 59.877 37.037 9.22 0.00 32.05 2.45
156 157 6.432783 CCAAATACAGGAAAAGGTGTACATCA 59.567 38.462 9.22 0.00 32.05 3.07
157 158 6.433093 ACCAAATACAGGAAAAGGTGTACATC 59.567 38.462 0.00 0.00 32.05 3.06
158 159 6.311735 ACCAAATACAGGAAAAGGTGTACAT 58.688 36.000 0.00 0.00 32.05 2.29
159 160 5.697067 ACCAAATACAGGAAAAGGTGTACA 58.303 37.500 0.00 0.00 32.05 2.90
160 161 5.182570 GGACCAAATACAGGAAAAGGTGTAC 59.817 44.000 0.00 0.00 32.05 2.90
161 162 5.073965 AGGACCAAATACAGGAAAAGGTGTA 59.926 40.000 0.00 0.00 33.75 2.90
162 163 4.141018 AGGACCAAATACAGGAAAAGGTGT 60.141 41.667 0.00 0.00 0.00 4.16
163 164 4.407365 AGGACCAAATACAGGAAAAGGTG 58.593 43.478 0.00 0.00 0.00 4.00
164 165 4.741928 AGGACCAAATACAGGAAAAGGT 57.258 40.909 0.00 0.00 0.00 3.50
165 166 5.045140 TCCTAGGACCAAATACAGGAAAAGG 60.045 44.000 7.62 0.00 0.00 3.11
166 167 5.880887 GTCCTAGGACCAAATACAGGAAAAG 59.119 44.000 28.87 0.00 39.08 2.27
167 168 5.812286 GTCCTAGGACCAAATACAGGAAAA 58.188 41.667 28.87 0.00 39.08 2.29
168 169 5.431179 GTCCTAGGACCAAATACAGGAAA 57.569 43.478 28.87 0.00 39.08 3.13
181 182 0.981801 GGGGGTTCAGGTCCTAGGAC 60.982 65.000 30.72 30.72 43.87 3.85
182 183 1.160289 AGGGGGTTCAGGTCCTAGGA 61.160 60.000 7.62 7.62 0.00 2.94
183 184 0.691413 GAGGGGGTTCAGGTCCTAGG 60.691 65.000 0.82 0.82 0.00 3.02
184 185 0.042731 TGAGGGGGTTCAGGTCCTAG 59.957 60.000 0.00 0.00 0.00 3.02
185 186 0.722676 ATGAGGGGGTTCAGGTCCTA 59.277 55.000 0.00 0.00 0.00 2.94
186 187 0.916358 CATGAGGGGGTTCAGGTCCT 60.916 60.000 0.00 0.00 0.00 3.85
187 188 1.208165 ACATGAGGGGGTTCAGGTCC 61.208 60.000 0.00 0.00 37.53 4.46
188 189 0.698818 AACATGAGGGGGTTCAGGTC 59.301 55.000 0.00 0.00 40.81 3.85
189 190 1.158007 AAACATGAGGGGGTTCAGGT 58.842 50.000 0.00 0.00 43.24 4.00
190 191 2.309136 AAAACATGAGGGGGTTCAGG 57.691 50.000 0.00 0.00 35.16 3.86
191 192 3.500343 AGAAAAACATGAGGGGGTTCAG 58.500 45.455 0.00 0.00 0.00 3.02
192 193 3.496331 GAGAAAAACATGAGGGGGTTCA 58.504 45.455 0.00 0.00 0.00 3.18
193 194 2.826128 GGAGAAAAACATGAGGGGGTTC 59.174 50.000 0.00 0.00 0.00 3.62
194 195 2.492753 GGGAGAAAAACATGAGGGGGTT 60.493 50.000 0.00 0.00 0.00 4.11
195 196 1.077169 GGGAGAAAAACATGAGGGGGT 59.923 52.381 0.00 0.00 0.00 4.95
196 197 1.077005 TGGGAGAAAAACATGAGGGGG 59.923 52.381 0.00 0.00 0.00 5.40
197 198 2.171003 GTGGGAGAAAAACATGAGGGG 58.829 52.381 0.00 0.00 0.00 4.79
198 199 2.821969 CAGTGGGAGAAAAACATGAGGG 59.178 50.000 0.00 0.00 0.00 4.30
199 200 2.229784 GCAGTGGGAGAAAAACATGAGG 59.770 50.000 0.00 0.00 0.00 3.86
200 201 3.152341 AGCAGTGGGAGAAAAACATGAG 58.848 45.455 0.00 0.00 0.00 2.90
201 202 3.228188 AGCAGTGGGAGAAAAACATGA 57.772 42.857 0.00 0.00 0.00 3.07
202 203 3.305608 GGAAGCAGTGGGAGAAAAACATG 60.306 47.826 0.00 0.00 0.00 3.21
203 204 2.893489 GGAAGCAGTGGGAGAAAAACAT 59.107 45.455 0.00 0.00 0.00 2.71
204 205 2.091885 AGGAAGCAGTGGGAGAAAAACA 60.092 45.455 0.00 0.00 0.00 2.83
205 206 2.294512 CAGGAAGCAGTGGGAGAAAAAC 59.705 50.000 0.00 0.00 0.00 2.43
206 207 2.586425 CAGGAAGCAGTGGGAGAAAAA 58.414 47.619 0.00 0.00 0.00 1.94
207 208 1.819305 GCAGGAAGCAGTGGGAGAAAA 60.819 52.381 0.00 0.00 44.79 2.29
208 209 0.250901 GCAGGAAGCAGTGGGAGAAA 60.251 55.000 0.00 0.00 44.79 2.52
209 210 1.376466 GCAGGAAGCAGTGGGAGAA 59.624 57.895 0.00 0.00 44.79 2.87
210 211 3.072476 GCAGGAAGCAGTGGGAGA 58.928 61.111 0.00 0.00 44.79 3.71
226 227 2.606272 GCTGGCTTTTCATTGCATTAGC 59.394 45.455 0.00 0.00 42.57 3.09
227 228 3.852286 TGCTGGCTTTTCATTGCATTAG 58.148 40.909 0.00 0.00 0.00 1.73
228 229 3.957591 TGCTGGCTTTTCATTGCATTA 57.042 38.095 0.00 0.00 0.00 1.90
229 230 2.843401 TGCTGGCTTTTCATTGCATT 57.157 40.000 0.00 0.00 0.00 3.56
230 231 2.843401 TTGCTGGCTTTTCATTGCAT 57.157 40.000 0.00 0.00 0.00 3.96
231 232 2.809119 CAATTGCTGGCTTTTCATTGCA 59.191 40.909 0.00 0.00 0.00 4.08
232 233 2.413634 GCAATTGCTGGCTTTTCATTGC 60.414 45.455 23.21 7.40 38.21 3.56
233 234 3.465122 GCAATTGCTGGCTTTTCATTG 57.535 42.857 23.21 0.00 38.21 2.82
246 247 5.697633 TCTTTTTGAAAGATCCAGCAATTGC 59.302 36.000 23.05 23.05 42.49 3.56
247 248 7.718272 TTCTTTTTGAAAGATCCAGCAATTG 57.282 32.000 0.00 0.00 0.00 2.32
250 251 9.260002 GTTTATTCTTTTTGAAAGATCCAGCAA 57.740 29.630 4.16 0.00 38.29 3.91
251 252 8.420222 TGTTTATTCTTTTTGAAAGATCCAGCA 58.580 29.630 4.16 0.61 38.29 4.41
252 253 8.703336 GTGTTTATTCTTTTTGAAAGATCCAGC 58.297 33.333 4.16 0.00 38.29 4.85
253 254 9.971922 AGTGTTTATTCTTTTTGAAAGATCCAG 57.028 29.630 4.16 0.00 38.29 3.86
293 294 8.967218 CATGTCTTCAACACGAATGTAATTTTT 58.033 29.630 0.00 0.00 41.75 1.94
294 295 8.349245 TCATGTCTTCAACACGAATGTAATTTT 58.651 29.630 0.00 0.00 41.75 1.82
295 296 7.870826 TCATGTCTTCAACACGAATGTAATTT 58.129 30.769 0.00 0.00 41.75 1.82
296 297 7.433708 TCATGTCTTCAACACGAATGTAATT 57.566 32.000 0.00 0.00 41.75 1.40
297 298 7.433708 TTCATGTCTTCAACACGAATGTAAT 57.566 32.000 0.00 0.00 41.75 1.89
298 299 6.565811 GCTTCATGTCTTCAACACGAATGTAA 60.566 38.462 0.00 0.00 39.19 2.41
299 300 5.107104 GCTTCATGTCTTCAACACGAATGTA 60.107 40.000 0.00 0.00 39.19 2.29
300 301 4.319766 GCTTCATGTCTTCAACACGAATGT 60.320 41.667 0.00 0.00 39.19 2.71
301 302 4.083643 AGCTTCATGTCTTCAACACGAATG 60.084 41.667 0.00 0.00 39.19 2.67
302 303 4.067896 AGCTTCATGTCTTCAACACGAAT 58.932 39.130 0.00 0.00 39.19 3.34
303 304 3.466836 AGCTTCATGTCTTCAACACGAA 58.533 40.909 0.00 0.00 41.75 3.85
304 305 3.111853 AGCTTCATGTCTTCAACACGA 57.888 42.857 0.00 0.00 41.75 4.35
305 306 4.201753 CCATAGCTTCATGTCTTCAACACG 60.202 45.833 0.00 0.00 41.75 4.49
306 307 4.937620 TCCATAGCTTCATGTCTTCAACAC 59.062 41.667 0.00 0.00 41.75 3.32
307 308 5.164620 TCCATAGCTTCATGTCTTCAACA 57.835 39.130 0.00 0.00 43.51 3.33
308 309 6.690194 AATCCATAGCTTCATGTCTTCAAC 57.310 37.500 0.00 0.00 0.00 3.18
309 310 6.095860 CCAAATCCATAGCTTCATGTCTTCAA 59.904 38.462 0.00 0.00 0.00 2.69
310 311 5.591472 CCAAATCCATAGCTTCATGTCTTCA 59.409 40.000 0.00 0.00 0.00 3.02
311 312 5.591877 ACCAAATCCATAGCTTCATGTCTTC 59.408 40.000 0.00 0.00 0.00 2.87
312 313 5.359009 CACCAAATCCATAGCTTCATGTCTT 59.641 40.000 0.00 0.00 0.00 3.01
313 314 4.885907 CACCAAATCCATAGCTTCATGTCT 59.114 41.667 0.00 0.00 0.00 3.41
314 315 4.883585 TCACCAAATCCATAGCTTCATGTC 59.116 41.667 0.00 0.00 0.00 3.06
315 316 4.858850 TCACCAAATCCATAGCTTCATGT 58.141 39.130 0.00 0.00 0.00 3.21
316 317 5.533528 TCATCACCAAATCCATAGCTTCATG 59.466 40.000 0.00 0.00 0.00 3.07
317 318 5.698104 TCATCACCAAATCCATAGCTTCAT 58.302 37.500 0.00 0.00 0.00 2.57
318 319 5.114764 TCATCACCAAATCCATAGCTTCA 57.885 39.130 0.00 0.00 0.00 3.02
319 320 6.645790 ATTCATCACCAAATCCATAGCTTC 57.354 37.500 0.00 0.00 0.00 3.86
320 321 7.946219 TGATATTCATCACCAAATCCATAGCTT 59.054 33.333 0.00 0.00 36.22 3.74
321 322 7.464273 TGATATTCATCACCAAATCCATAGCT 58.536 34.615 0.00 0.00 36.22 3.32
322 323 7.392673 ACTGATATTCATCACCAAATCCATAGC 59.607 37.037 0.00 0.00 36.22 2.97
323 324 8.859236 ACTGATATTCATCACCAAATCCATAG 57.141 34.615 0.00 0.00 36.22 2.23
324 325 9.948964 CTACTGATATTCATCACCAAATCCATA 57.051 33.333 0.00 0.00 36.22 2.74
325 326 8.663167 TCTACTGATATTCATCACCAAATCCAT 58.337 33.333 0.00 0.00 36.22 3.41
326 327 7.933577 GTCTACTGATATTCATCACCAAATCCA 59.066 37.037 0.00 0.00 36.22 3.41
327 328 7.933577 TGTCTACTGATATTCATCACCAAATCC 59.066 37.037 0.00 0.00 36.22 3.01
328 329 8.768955 GTGTCTACTGATATTCATCACCAAATC 58.231 37.037 0.00 0.00 36.22 2.17
329 330 7.716998 GGTGTCTACTGATATTCATCACCAAAT 59.283 37.037 0.00 0.00 41.34 2.32
330 331 7.047891 GGTGTCTACTGATATTCATCACCAAA 58.952 38.462 0.00 0.00 41.34 3.28
331 332 6.582636 GGTGTCTACTGATATTCATCACCAA 58.417 40.000 0.00 0.00 41.34 3.67
332 333 5.221244 CGGTGTCTACTGATATTCATCACCA 60.221 44.000 0.00 0.00 41.64 4.17
333 334 5.009710 TCGGTGTCTACTGATATTCATCACC 59.990 44.000 0.00 0.00 37.28 4.02
334 335 5.915758 GTCGGTGTCTACTGATATTCATCAC 59.084 44.000 0.00 0.00 43.71 3.06
335 336 5.592688 TGTCGGTGTCTACTGATATTCATCA 59.407 40.000 0.00 0.00 43.71 3.07
336 337 6.073327 TGTCGGTGTCTACTGATATTCATC 57.927 41.667 0.00 0.00 43.71 2.92
337 338 6.465439 TTGTCGGTGTCTACTGATATTCAT 57.535 37.500 0.00 0.00 43.71 2.57
338 339 5.907866 TTGTCGGTGTCTACTGATATTCA 57.092 39.130 0.00 0.00 43.71 2.57
339 340 7.591006 TTTTTGTCGGTGTCTACTGATATTC 57.409 36.000 0.00 0.00 43.71 1.75
430 431 9.035607 GCTCTCTCTATCGATTTATTTTTGACA 57.964 33.333 1.71 0.00 0.00 3.58
431 432 8.211181 CGCTCTCTCTATCGATTTATTTTTGAC 58.789 37.037 1.71 0.00 0.00 3.18
432 433 7.382488 CCGCTCTCTCTATCGATTTATTTTTGA 59.618 37.037 1.71 0.00 0.00 2.69
433 434 7.359598 CCCGCTCTCTCTATCGATTTATTTTTG 60.360 40.741 1.71 0.00 0.00 2.44
434 435 6.647067 CCCGCTCTCTCTATCGATTTATTTTT 59.353 38.462 1.71 0.00 0.00 1.94
435 436 6.015350 TCCCGCTCTCTCTATCGATTTATTTT 60.015 38.462 1.71 0.00 0.00 1.82
436 437 5.477291 TCCCGCTCTCTCTATCGATTTATTT 59.523 40.000 1.71 0.00 0.00 1.40
437 438 5.010933 TCCCGCTCTCTCTATCGATTTATT 58.989 41.667 1.71 0.00 0.00 1.40
438 439 4.590918 TCCCGCTCTCTCTATCGATTTAT 58.409 43.478 1.71 0.00 0.00 1.40
439 440 4.004314 CTCCCGCTCTCTCTATCGATTTA 58.996 47.826 1.71 0.00 0.00 1.40
440 441 2.817258 CTCCCGCTCTCTCTATCGATTT 59.183 50.000 1.71 0.00 0.00 2.17
441 442 2.224670 ACTCCCGCTCTCTCTATCGATT 60.225 50.000 1.71 0.00 0.00 3.34
442 443 1.349688 ACTCCCGCTCTCTCTATCGAT 59.650 52.381 2.16 2.16 0.00 3.59
443 444 0.759959 ACTCCCGCTCTCTCTATCGA 59.240 55.000 0.00 0.00 0.00 3.59
444 445 0.871722 CACTCCCGCTCTCTCTATCG 59.128 60.000 0.00 0.00 0.00 2.92
445 446 2.151202 CTCACTCCCGCTCTCTCTATC 58.849 57.143 0.00 0.00 0.00 2.08
446 447 1.771854 TCTCACTCCCGCTCTCTCTAT 59.228 52.381 0.00 0.00 0.00 1.98
447 448 1.140052 CTCTCACTCCCGCTCTCTCTA 59.860 57.143 0.00 0.00 0.00 2.43
448 449 0.107214 CTCTCACTCCCGCTCTCTCT 60.107 60.000 0.00 0.00 0.00 3.10
449 450 1.101049 CCTCTCACTCCCGCTCTCTC 61.101 65.000 0.00 0.00 0.00 3.20
450 451 1.077068 CCTCTCACTCCCGCTCTCT 60.077 63.158 0.00 0.00 0.00 3.10
451 452 1.077357 TCCTCTCACTCCCGCTCTC 60.077 63.158 0.00 0.00 0.00 3.20
452 453 1.077068 CTCCTCTCACTCCCGCTCT 60.077 63.158 0.00 0.00 0.00 4.09
453 454 1.077357 TCTCCTCTCACTCCCGCTC 60.077 63.158 0.00 0.00 0.00 5.03
454 455 1.379309 GTCTCCTCTCACTCCCGCT 60.379 63.158 0.00 0.00 0.00 5.52
455 456 1.662438 CTGTCTCCTCTCACTCCCGC 61.662 65.000 0.00 0.00 0.00 6.13
456 457 0.322997 ACTGTCTCCTCTCACTCCCG 60.323 60.000 0.00 0.00 0.00 5.14
457 458 1.181786 CACTGTCTCCTCTCACTCCC 58.818 60.000 0.00 0.00 0.00 4.30
458 459 1.181786 CCACTGTCTCCTCTCACTCC 58.818 60.000 0.00 0.00 0.00 3.85
459 460 1.181786 CCCACTGTCTCCTCTCACTC 58.818 60.000 0.00 0.00 0.00 3.51
460 461 0.252012 CCCCACTGTCTCCTCTCACT 60.252 60.000 0.00 0.00 0.00 3.41
461 462 0.251832 TCCCCACTGTCTCCTCTCAC 60.252 60.000 0.00 0.00 0.00 3.51
462 463 0.487325 TTCCCCACTGTCTCCTCTCA 59.513 55.000 0.00 0.00 0.00 3.27
463 464 1.484240 CATTCCCCACTGTCTCCTCTC 59.516 57.143 0.00 0.00 0.00 3.20
464 465 1.577736 CATTCCCCACTGTCTCCTCT 58.422 55.000 0.00 0.00 0.00 3.69
465 466 0.543749 CCATTCCCCACTGTCTCCTC 59.456 60.000 0.00 0.00 0.00 3.71
466 467 0.119155 TCCATTCCCCACTGTCTCCT 59.881 55.000 0.00 0.00 0.00 3.69
467 468 1.133976 CATCCATTCCCCACTGTCTCC 60.134 57.143 0.00 0.00 0.00 3.71
468 469 1.133976 CCATCCATTCCCCACTGTCTC 60.134 57.143 0.00 0.00 0.00 3.36
469 470 0.921896 CCATCCATTCCCCACTGTCT 59.078 55.000 0.00 0.00 0.00 3.41
470 471 0.625849 ACCATCCATTCCCCACTGTC 59.374 55.000 0.00 0.00 0.00 3.51
471 472 0.332632 CACCATCCATTCCCCACTGT 59.667 55.000 0.00 0.00 0.00 3.55
472 473 0.625316 TCACCATCCATTCCCCACTG 59.375 55.000 0.00 0.00 0.00 3.66
473 474 1.381867 TTCACCATCCATTCCCCACT 58.618 50.000 0.00 0.00 0.00 4.00
474 475 2.230130 TTTCACCATCCATTCCCCAC 57.770 50.000 0.00 0.00 0.00 4.61
475 476 3.266477 TTTTTCACCATCCATTCCCCA 57.734 42.857 0.00 0.00 0.00 4.96
494 495 1.134220 TGTGAGAGCGTGGTCCTTTTT 60.134 47.619 0.00 0.00 0.00 1.94
495 496 0.468226 TGTGAGAGCGTGGTCCTTTT 59.532 50.000 0.00 0.00 0.00 2.27
496 497 0.687354 ATGTGAGAGCGTGGTCCTTT 59.313 50.000 0.00 0.00 0.00 3.11
497 498 1.204941 GTATGTGAGAGCGTGGTCCTT 59.795 52.381 0.00 0.00 0.00 3.36
498 499 0.818296 GTATGTGAGAGCGTGGTCCT 59.182 55.000 0.00 0.00 0.00 3.85
499 500 0.179108 GGTATGTGAGAGCGTGGTCC 60.179 60.000 0.00 0.00 0.00 4.46
500 501 0.179108 GGGTATGTGAGAGCGTGGTC 60.179 60.000 0.00 0.00 0.00 4.02
501 502 0.902984 TGGGTATGTGAGAGCGTGGT 60.903 55.000 0.00 0.00 0.00 4.16
502 503 0.465705 ATGGGTATGTGAGAGCGTGG 59.534 55.000 0.00 0.00 0.00 4.94
503 504 1.575244 CATGGGTATGTGAGAGCGTG 58.425 55.000 0.00 0.00 0.00 5.34
504 505 0.179073 GCATGGGTATGTGAGAGCGT 60.179 55.000 0.00 0.00 36.65 5.07
505 506 1.217585 CGCATGGGTATGTGAGAGCG 61.218 60.000 0.68 0.00 45.49 5.03
506 507 0.882042 CCGCATGGGTATGTGAGAGC 60.882 60.000 9.14 0.00 45.49 4.09
507 508 0.882042 GCCGCATGGGTATGTGAGAG 60.882 60.000 9.14 0.00 45.49 3.20
508 509 1.146041 GCCGCATGGGTATGTGAGA 59.854 57.895 9.14 0.00 45.49 3.27
509 510 1.893808 GGCCGCATGGGTATGTGAG 60.894 63.158 9.14 0.00 45.49 3.51
510 511 2.191908 GGCCGCATGGGTATGTGA 59.808 61.111 9.14 0.00 45.49 3.58
511 512 2.124362 TGGCCGCATGGGTATGTG 60.124 61.111 9.14 0.00 42.96 3.21
512 513 2.192979 CTGGCCGCATGGGTATGT 59.807 61.111 9.14 0.00 38.44 2.29
513 514 2.595463 CCTGGCCGCATGGGTATG 60.595 66.667 9.14 0.00 38.44 2.39
514 515 4.586235 GCCTGGCCGCATGGGTAT 62.586 66.667 7.66 0.00 38.44 2.73
525 526 1.152881 CTTGGTATCTGGGCCTGGC 60.153 63.158 11.05 11.05 0.00 4.85
526 527 0.181350 GACTTGGTATCTGGGCCTGG 59.819 60.000 10.79 0.45 0.00 4.45
527 528 0.911769 TGACTTGGTATCTGGGCCTG 59.088 55.000 4.53 4.06 0.00 4.85
528 529 1.282157 GTTGACTTGGTATCTGGGCCT 59.718 52.381 4.53 0.00 0.00 5.19
529 530 1.004277 TGTTGACTTGGTATCTGGGCC 59.996 52.381 0.00 0.00 0.00 5.80
530 531 2.027192 TCTGTTGACTTGGTATCTGGGC 60.027 50.000 0.00 0.00 0.00 5.36
531 532 3.981071 TCTGTTGACTTGGTATCTGGG 57.019 47.619 0.00 0.00 0.00 4.45
532 533 4.455877 GGTTTCTGTTGACTTGGTATCTGG 59.544 45.833 0.00 0.00 0.00 3.86
533 534 4.152402 CGGTTTCTGTTGACTTGGTATCTG 59.848 45.833 0.00 0.00 0.00 2.90
534 535 4.039973 TCGGTTTCTGTTGACTTGGTATCT 59.960 41.667 0.00 0.00 0.00 1.98
535 536 4.312443 TCGGTTTCTGTTGACTTGGTATC 58.688 43.478 0.00 0.00 0.00 2.24
536 537 4.039973 TCTCGGTTTCTGTTGACTTGGTAT 59.960 41.667 0.00 0.00 0.00 2.73
537 538 3.385433 TCTCGGTTTCTGTTGACTTGGTA 59.615 43.478 0.00 0.00 0.00 3.25
538 539 2.169769 TCTCGGTTTCTGTTGACTTGGT 59.830 45.455 0.00 0.00 0.00 3.67
539 540 2.544267 GTCTCGGTTTCTGTTGACTTGG 59.456 50.000 0.00 0.00 0.00 3.61
540 541 3.001330 GTGTCTCGGTTTCTGTTGACTTG 59.999 47.826 0.00 0.00 0.00 3.16
541 542 3.195661 GTGTCTCGGTTTCTGTTGACTT 58.804 45.455 0.00 0.00 0.00 3.01
542 543 2.798499 CGTGTCTCGGTTTCTGTTGACT 60.798 50.000 0.00 0.00 35.71 3.41
543 544 1.521423 CGTGTCTCGGTTTCTGTTGAC 59.479 52.381 0.00 0.00 35.71 3.18
544 545 1.135527 ACGTGTCTCGGTTTCTGTTGA 59.864 47.619 0.00 0.00 44.69 3.18
545 546 1.257936 CACGTGTCTCGGTTTCTGTTG 59.742 52.381 7.58 0.00 44.69 3.33
546 547 1.135527 TCACGTGTCTCGGTTTCTGTT 59.864 47.619 16.51 0.00 44.69 3.16
547 548 0.742505 TCACGTGTCTCGGTTTCTGT 59.257 50.000 16.51 0.00 44.69 3.41
548 549 1.847818 TTCACGTGTCTCGGTTTCTG 58.152 50.000 16.51 0.00 44.69 3.02
549 550 2.589798 TTTCACGTGTCTCGGTTTCT 57.410 45.000 16.51 0.00 44.69 2.52
550 551 3.872560 ATTTTCACGTGTCTCGGTTTC 57.127 42.857 16.51 0.00 44.69 2.78
551 552 4.753107 ACATATTTTCACGTGTCTCGGTTT 59.247 37.500 16.51 0.00 44.69 3.27
552 553 4.312443 ACATATTTTCACGTGTCTCGGTT 58.688 39.130 16.51 0.00 44.69 4.44
553 554 3.921677 ACATATTTTCACGTGTCTCGGT 58.078 40.909 16.51 4.02 44.69 4.69
554 555 3.306166 GGACATATTTTCACGTGTCTCGG 59.694 47.826 16.51 3.39 44.69 4.63
555 556 4.174009 AGGACATATTTTCACGTGTCTCG 58.826 43.478 16.51 1.77 40.50 4.04
556 557 5.411781 AGAGGACATATTTTCACGTGTCTC 58.588 41.667 16.51 7.91 40.50 3.36
557 558 5.186021 AGAGAGGACATATTTTCACGTGTCT 59.814 40.000 16.51 6.02 40.50 3.41
558 559 5.411781 AGAGAGGACATATTTTCACGTGTC 58.588 41.667 16.51 2.55 40.07 3.67
559 560 5.407407 AGAGAGGACATATTTTCACGTGT 57.593 39.130 16.51 0.00 0.00 4.49
560 561 4.806247 GGAGAGAGGACATATTTTCACGTG 59.194 45.833 9.94 9.94 0.00 4.49
561 562 4.712337 AGGAGAGAGGACATATTTTCACGT 59.288 41.667 0.00 0.00 0.00 4.49
562 563 5.269505 AGGAGAGAGGACATATTTTCACG 57.730 43.478 0.00 0.00 0.00 4.35
563 564 6.740122 GCCTAGGAGAGAGGACATATTTTCAC 60.740 46.154 14.75 0.00 35.99 3.18
564 565 5.305644 GCCTAGGAGAGAGGACATATTTTCA 59.694 44.000 14.75 0.00 35.99 2.69
565 566 5.542251 AGCCTAGGAGAGAGGACATATTTTC 59.458 44.000 14.75 0.00 35.99 2.29
566 567 5.472347 AGCCTAGGAGAGAGGACATATTTT 58.528 41.667 14.75 0.00 35.99 1.82
567 568 5.083821 GAGCCTAGGAGAGAGGACATATTT 58.916 45.833 14.75 0.00 35.99 1.40
568 569 4.510205 GGAGCCTAGGAGAGAGGACATATT 60.510 50.000 14.75 0.00 35.99 1.28
575 576 1.228429 CGGGAGCCTAGGAGAGAGG 60.228 68.421 14.75 0.00 37.12 3.69
624 625 3.431766 CGGGGATCCAGAGTTCGTTTAAT 60.432 47.826 15.23 0.00 0.00 1.40
627 628 0.249398 CGGGGATCCAGAGTTCGTTT 59.751 55.000 15.23 0.00 0.00 3.60
951 973 1.300620 CGAGGACGAAACACCAGCA 60.301 57.895 0.00 0.00 42.66 4.41
954 976 2.029964 GCCGAGGACGAAACACCA 59.970 61.111 0.00 0.00 42.66 4.17
993 1015 4.442052 CGAAGCCTTTCCATCATCTACTCA 60.442 45.833 0.00 0.00 0.00 3.41
997 1019 2.485479 GCCGAAGCCTTTCCATCATCTA 60.485 50.000 0.00 0.00 0.00 1.98
1072 1094 1.077501 CACAATCCGGAGCCACCAT 60.078 57.895 11.34 0.00 38.90 3.55
1092 1114 1.655114 AAAGCACCTTCCCCACCAGT 61.655 55.000 0.00 0.00 0.00 4.00
1228 1251 3.005539 GGCTCTGTCTGCCTGGGA 61.006 66.667 0.00 0.00 46.38 4.37
1309 1340 4.927049 ACATGAAGAGGTTGGATGTTCAT 58.073 39.130 0.00 0.00 40.23 2.57
1395 1426 2.223572 GGCAAATTCCATACCGAGCTTG 60.224 50.000 0.00 0.00 0.00 4.01
1431 1462 7.177216 TCAGAATCAGCATCCACTTTAACAATT 59.823 33.333 0.00 0.00 0.00 2.32
1440 1471 2.508716 ACCATCAGAATCAGCATCCACT 59.491 45.455 0.00 0.00 0.00 4.00
1500 1531 1.613630 AAGTGGCTCCTGGACCGAT 60.614 57.895 0.00 0.00 0.00 4.18
1501 1532 2.203788 AAGTGGCTCCTGGACCGA 60.204 61.111 0.00 0.00 0.00 4.69
1537 1576 2.079925 GTGTCAGTGGATTGAAGCCTC 58.920 52.381 0.00 0.00 0.00 4.70
1600 1639 2.009774 CAGTGACCGATAAGCCCAAAG 58.990 52.381 0.00 0.00 0.00 2.77
1602 1641 0.981183 ACAGTGACCGATAAGCCCAA 59.019 50.000 0.00 0.00 0.00 4.12
1610 1649 0.391597 AACACCGAACAGTGACCGAT 59.608 50.000 0.00 0.00 40.34 4.18
1620 1659 0.589708 GTTAGGGCACAACACCGAAC 59.410 55.000 0.00 0.00 35.70 3.95
1627 1666 2.360726 CCGGGGTTAGGGCACAAC 60.361 66.667 0.00 0.00 0.00 3.32
1697 1737 4.754114 AGACTTTTTGTGACTCTCATCAGC 59.246 41.667 0.00 0.00 0.00 4.26
1730 1770 6.567701 GCAGAGGAAGAAGTAGTAGATGATCG 60.568 46.154 0.00 0.00 0.00 3.69
1935 1977 1.344763 CTCGAGAACAACTCCCTGGTT 59.655 52.381 6.58 0.00 42.18 3.67
1937 1979 0.969894 ACTCGAGAACAACTCCCTGG 59.030 55.000 21.68 0.00 42.18 4.45
1945 1987 1.699730 TCCTGACCACTCGAGAACAA 58.300 50.000 21.68 0.00 0.00 2.83
1954 1996 3.763897 GTGCCATTTTTATCCTGACCACT 59.236 43.478 0.00 0.00 0.00 4.00
1965 2007 4.574892 TCTGTCTCGATGTGCCATTTTTA 58.425 39.130 0.00 0.00 0.00 1.52
1968 2010 2.768253 TCTGTCTCGATGTGCCATTT 57.232 45.000 0.00 0.00 0.00 2.32
1981 2023 2.303022 TGGCCGATTTTCTCTTCTGTCT 59.697 45.455 0.00 0.00 0.00 3.41
1983 2025 2.859165 TGGCCGATTTTCTCTTCTGT 57.141 45.000 0.00 0.00 0.00 3.41
1992 2034 1.340114 GGGAGAGACTTGGCCGATTTT 60.340 52.381 0.00 0.00 0.00 1.82
2020 2062 0.460987 GGTTCCTGCTCACTGATCGG 60.461 60.000 0.00 0.00 0.00 4.18
2026 2068 1.192146 TAAGCCGGTTCCTGCTCACT 61.192 55.000 1.90 0.00 36.66 3.41
2031 2073 0.393808 TGGAATAAGCCGGTTCCTGC 60.394 55.000 19.21 1.75 43.41 4.85
2044 2086 2.658285 CAGGGCAAGAGCATTGGAATA 58.342 47.619 4.13 0.00 44.61 1.75
2047 2089 1.000521 CCAGGGCAAGAGCATTGGA 60.001 57.895 4.13 0.00 44.13 3.53
2107 2170 5.333111 GGTCTGATGTACGTTGTTTCTTGTC 60.333 44.000 0.00 0.00 0.00 3.18
2148 2211 4.075854 TGCATCGTAGCCGCCACA 62.076 61.111 0.00 0.00 0.00 4.17
2192 2255 1.301716 GCCTCGACAGTTCCAGCAA 60.302 57.895 0.00 0.00 0.00 3.91
2259 2322 2.760385 GAGGAGGGAGGGTCGGTG 60.760 72.222 0.00 0.00 0.00 4.94
2335 2398 3.054875 TGACAGCAGAACAGCCAGAATAT 60.055 43.478 0.00 0.00 34.23 1.28
2349 2413 1.375652 CCCTCACAGCTGACAGCAG 60.376 63.158 28.43 22.94 45.56 4.24
2360 2424 1.705002 CCACCACCAAGTCCCTCACA 61.705 60.000 0.00 0.00 0.00 3.58
2368 2432 0.755327 GAACAAGGCCACCACCAAGT 60.755 55.000 5.01 0.00 0.00 3.16
2372 2436 1.068588 GAAAAGAACAAGGCCACCACC 59.931 52.381 5.01 0.00 0.00 4.61
2385 2449 0.881118 GGCATGCGACCAGAAAAGAA 59.119 50.000 12.44 0.00 0.00 2.52
2492 2557 4.382040 CGCTCTTCTTGGTTCTCCATAGAA 60.382 45.833 0.00 0.00 43.91 2.10
2509 2574 5.355596 CAAAAGTGAGATCTATCCGCTCTT 58.644 41.667 0.00 0.00 0.00 2.85
2514 2579 4.672587 TCCCAAAAGTGAGATCTATCCG 57.327 45.455 0.00 0.00 0.00 4.18
2536 2601 1.005037 TTGCATGCGTCGAAGGAGT 60.005 52.632 14.09 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.