Multiple sequence alignment - TraesCS7D01G410400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G410400 chr7D 100.000 2384 0 0 1 2384 529683069 529680686 0.000000e+00 4403.0
1 TraesCS7D01G410400 chr7D 90.777 1583 87 26 853 2384 529772419 529773993 0.000000e+00 2060.0
2 TraesCS7D01G410400 chr7D 80.370 270 29 8 593 840 529772106 529772373 1.460000e-42 183.0
3 TraesCS7D01G410400 chr7B 91.529 968 37 11 1457 2384 567636612 567635650 0.000000e+00 1291.0
4 TraesCS7D01G410400 chr7B 92.148 917 41 7 1494 2384 567883717 567884628 0.000000e+00 1266.0
5 TraesCS7D01G410400 chr7B 95.113 532 22 2 855 1385 567882656 567883184 0.000000e+00 835.0
6 TraesCS7D01G410400 chr7B 97.022 403 12 0 1021 1423 567637087 567636685 0.000000e+00 678.0
7 TraesCS7D01G410400 chr7B 84.270 267 22 4 593 840 567882343 567882608 2.370000e-60 243.0
8 TraesCS7D01G410400 chr7B 91.736 121 4 3 623 737 567639289 567639169 1.900000e-36 163.0
9 TraesCS7D01G410400 chr7A 89.932 884 56 11 531 1386 609173129 609172251 0.000000e+00 1109.0
10 TraesCS7D01G410400 chr7A 91.373 823 38 5 1595 2384 609338908 609339730 0.000000e+00 1096.0
11 TraesCS7D01G410400 chr7A 94.228 693 35 2 1692 2384 609134510 609133823 0.000000e+00 1053.0
12 TraesCS7D01G410400 chr7A 94.792 576 19 6 853 1419 609335686 609336259 0.000000e+00 887.0
13 TraesCS7D01G410400 chr7A 96.460 113 4 0 623 735 609335418 609335530 1.130000e-43 187.0
14 TraesCS7D01G410400 chr7A 89.362 94 10 0 1594 1687 609141013 609140920 4.160000e-23 119.0
15 TraesCS7D01G410400 chr3D 91.776 304 24 1 229 532 120098325 120098627 2.830000e-114 422.0
16 TraesCS7D01G410400 chr3D 87.879 231 26 2 1 230 602804615 602804386 1.090000e-68 270.0
17 TraesCS7D01G410400 chr3D 77.133 293 59 8 246 535 552414115 552413828 1.900000e-36 163.0
18 TraesCS7D01G410400 chr3D 90.351 114 11 0 7 120 119736867 119736980 1.480000e-32 150.0
19 TraesCS7D01G410400 chr1B 87.948 307 35 2 229 535 675254421 675254117 6.260000e-96 361.0
20 TraesCS7D01G410400 chr2A 87.541 305 34 4 229 532 92626817 92627118 1.360000e-92 350.0
21 TraesCS7D01G410400 chr5A 89.157 249 26 1 229 477 559782726 559782479 2.300000e-80 309.0
22 TraesCS7D01G410400 chr6D 84.321 287 34 4 232 518 295041357 295041082 1.090000e-68 270.0
23 TraesCS7D01G410400 chr6D 83.505 291 37 4 232 522 294959716 294959437 6.540000e-66 261.0
24 TraesCS7D01G410400 chr3A 87.446 231 27 2 1 230 733038584 733038813 5.050000e-67 265.0
25 TraesCS7D01G410400 chr1D 79.181 293 54 7 246 535 383698202 383697914 1.870000e-46 196.0
26 TraesCS7D01G410400 chr3B 77.199 307 60 8 233 535 529788786 529788486 1.130000e-38 171.0
27 TraesCS7D01G410400 chr4B 83.654 104 17 0 1247 1350 654751736 654751633 5.420000e-17 99.0
28 TraesCS7D01G410400 chr4B 82.692 104 18 0 1247 1350 654761975 654761872 2.520000e-15 93.5
29 TraesCS7D01G410400 chr4B 82.692 104 18 0 1247 1350 654774181 654774078 2.520000e-15 93.5
30 TraesCS7D01G410400 chr4B 81.731 104 19 0 1247 1350 654699241 654699138 1.170000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G410400 chr7D 529680686 529683069 2383 True 4403.000000 4403 100.000000 1 2384 1 chr7D.!!$R1 2383
1 TraesCS7D01G410400 chr7D 529772106 529773993 1887 False 1121.500000 2060 85.573500 593 2384 2 chr7D.!!$F1 1791
2 TraesCS7D01G410400 chr7B 567882343 567884628 2285 False 781.333333 1266 90.510333 593 2384 3 chr7B.!!$F1 1791
3 TraesCS7D01G410400 chr7B 567635650 567639289 3639 True 710.666667 1291 93.429000 623 2384 3 chr7B.!!$R1 1761
4 TraesCS7D01G410400 chr7A 609172251 609173129 878 True 1109.000000 1109 89.932000 531 1386 1 chr7A.!!$R3 855
5 TraesCS7D01G410400 chr7A 609133823 609134510 687 True 1053.000000 1053 94.228000 1692 2384 1 chr7A.!!$R1 692
6 TraesCS7D01G410400 chr7A 609335418 609339730 4312 False 723.333333 1096 94.208333 623 2384 3 chr7A.!!$F1 1761

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 94 0.030908 TAAAGGTTTTGGCGTTGCGG 59.969 50.0 0.0 0.0 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1919 6698 0.101579 GAGCTACCTCCAGAAGACGC 59.898 60.0 0.0 0.0 31.68 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.186903 AAGGCGGTGCGACCATAG 59.813 61.111 6.21 0.00 38.47 2.23
18 19 3.385749 AAGGCGGTGCGACCATAGG 62.386 63.158 6.21 0.00 38.47 2.57
19 20 4.910585 GGCGGTGCGACCATAGGG 62.911 72.222 0.00 0.00 38.47 3.53
37 38 8.299990 CCATAGGGTTAGGTCAGAGATAATAG 57.700 42.308 0.00 0.00 0.00 1.73
38 39 7.147811 CCATAGGGTTAGGTCAGAGATAATAGC 60.148 44.444 0.00 0.00 0.00 2.97
39 40 5.088026 AGGGTTAGGTCAGAGATAATAGCC 58.912 45.833 0.00 0.00 0.00 3.93
40 41 4.223255 GGGTTAGGTCAGAGATAATAGCCC 59.777 50.000 0.00 0.00 0.00 5.19
41 42 5.088026 GGTTAGGTCAGAGATAATAGCCCT 58.912 45.833 0.00 0.00 0.00 5.19
42 43 6.254522 GGTTAGGTCAGAGATAATAGCCCTA 58.745 44.000 0.00 0.00 0.00 3.53
43 44 6.724905 GGTTAGGTCAGAGATAATAGCCCTAA 59.275 42.308 0.00 0.00 32.43 2.69
44 45 7.400627 GGTTAGGTCAGAGATAATAGCCCTAAT 59.599 40.741 0.00 0.00 36.16 1.73
45 46 8.817876 GTTAGGTCAGAGATAATAGCCCTAATT 58.182 37.037 0.00 0.00 36.16 1.40
47 48 8.368962 AGGTCAGAGATAATAGCCCTAATTAC 57.631 38.462 0.00 0.00 0.00 1.89
48 49 7.956315 AGGTCAGAGATAATAGCCCTAATTACA 59.044 37.037 0.00 0.00 0.00 2.41
49 50 8.763601 GGTCAGAGATAATAGCCCTAATTACAT 58.236 37.037 0.00 0.00 0.00 2.29
50 51 9.810545 GTCAGAGATAATAGCCCTAATTACATC 57.189 37.037 0.00 0.00 0.00 3.06
51 52 9.547279 TCAGAGATAATAGCCCTAATTACATCA 57.453 33.333 0.00 0.00 0.00 3.07
65 66 8.657387 CTAATTACATCATTAGGAGAGAGGGA 57.343 38.462 0.00 0.00 34.33 4.20
66 67 6.926630 ATTACATCATTAGGAGAGAGGGAC 57.073 41.667 0.00 0.00 0.00 4.46
67 68 4.271807 ACATCATTAGGAGAGAGGGACA 57.728 45.455 0.00 0.00 0.00 4.02
68 69 4.624913 ACATCATTAGGAGAGAGGGACAA 58.375 43.478 0.00 0.00 0.00 3.18
69 70 4.653341 ACATCATTAGGAGAGAGGGACAAG 59.347 45.833 0.00 0.00 0.00 3.16
70 71 4.338795 TCATTAGGAGAGAGGGACAAGT 57.661 45.455 0.00 0.00 0.00 3.16
71 72 4.689062 TCATTAGGAGAGAGGGACAAGTT 58.311 43.478 0.00 0.00 0.00 2.66
72 73 4.712337 TCATTAGGAGAGAGGGACAAGTTC 59.288 45.833 0.00 0.00 0.00 3.01
73 74 1.945580 AGGAGAGAGGGACAAGTTCC 58.054 55.000 0.00 0.00 45.00 3.62
74 75 1.435168 AGGAGAGAGGGACAAGTTCCT 59.565 52.381 0.00 0.00 45.09 3.36
75 76 2.655407 AGGAGAGAGGGACAAGTTCCTA 59.345 50.000 0.00 0.00 45.09 2.94
76 77 3.077695 AGGAGAGAGGGACAAGTTCCTAA 59.922 47.826 0.00 0.00 45.09 2.69
77 78 3.838903 GGAGAGAGGGACAAGTTCCTAAA 59.161 47.826 0.00 0.00 45.09 1.85
78 79 4.081365 GGAGAGAGGGACAAGTTCCTAAAG 60.081 50.000 0.00 0.00 45.09 1.85
79 80 3.841255 AGAGAGGGACAAGTTCCTAAAGG 59.159 47.826 0.00 0.00 45.09 3.11
80 81 3.583526 GAGAGGGACAAGTTCCTAAAGGT 59.416 47.826 0.00 0.00 45.09 3.50
81 82 3.981375 AGAGGGACAAGTTCCTAAAGGTT 59.019 43.478 0.00 0.00 45.09 3.50
82 83 4.415846 AGAGGGACAAGTTCCTAAAGGTTT 59.584 41.667 0.00 0.00 45.09 3.27
83 84 5.103643 AGAGGGACAAGTTCCTAAAGGTTTT 60.104 40.000 0.00 0.00 45.09 2.43
84 85 4.893524 AGGGACAAGTTCCTAAAGGTTTTG 59.106 41.667 0.00 2.88 45.09 2.44
85 86 4.038763 GGGACAAGTTCCTAAAGGTTTTGG 59.961 45.833 0.00 0.00 45.09 3.28
86 87 4.500887 GGACAAGTTCCTAAAGGTTTTGGC 60.501 45.833 0.00 2.28 41.95 4.52
87 88 3.067601 ACAAGTTCCTAAAGGTTTTGGCG 59.932 43.478 0.00 0.00 33.84 5.69
88 89 2.940158 AGTTCCTAAAGGTTTTGGCGT 58.060 42.857 0.00 0.00 33.84 5.68
89 90 3.293337 AGTTCCTAAAGGTTTTGGCGTT 58.707 40.909 0.00 0.00 33.84 4.84
90 91 3.067601 AGTTCCTAAAGGTTTTGGCGTTG 59.932 43.478 0.00 0.00 33.84 4.10
91 92 1.338655 TCCTAAAGGTTTTGGCGTTGC 59.661 47.619 0.00 0.00 33.84 4.17
92 93 1.404477 CTAAAGGTTTTGGCGTTGCG 58.596 50.000 0.00 0.00 0.00 4.85
93 94 0.030908 TAAAGGTTTTGGCGTTGCGG 59.969 50.000 0.00 0.00 0.00 5.69
94 95 2.636778 AAAGGTTTTGGCGTTGCGGG 62.637 55.000 0.00 0.00 0.00 6.13
103 104 3.342627 CGTTGCGGGCGTCTCAAA 61.343 61.111 0.00 0.00 0.00 2.69
104 105 2.677003 CGTTGCGGGCGTCTCAAAT 61.677 57.895 0.00 0.00 0.00 2.32
105 106 1.579429 GTTGCGGGCGTCTCAAATT 59.421 52.632 0.00 0.00 0.00 1.82
106 107 0.039527 GTTGCGGGCGTCTCAAATTT 60.040 50.000 0.00 0.00 0.00 1.82
107 108 0.671251 TTGCGGGCGTCTCAAATTTT 59.329 45.000 0.00 0.00 0.00 1.82
108 109 0.671251 TGCGGGCGTCTCAAATTTTT 59.329 45.000 0.00 0.00 0.00 1.94
109 110 1.335506 TGCGGGCGTCTCAAATTTTTC 60.336 47.619 0.00 0.00 0.00 2.29
110 111 1.335506 GCGGGCGTCTCAAATTTTTCA 60.336 47.619 0.00 0.00 0.00 2.69
111 112 2.671070 GCGGGCGTCTCAAATTTTTCAT 60.671 45.455 0.00 0.00 0.00 2.57
112 113 3.426963 GCGGGCGTCTCAAATTTTTCATA 60.427 43.478 0.00 0.00 0.00 2.15
113 114 4.728534 CGGGCGTCTCAAATTTTTCATAA 58.271 39.130 0.00 0.00 0.00 1.90
114 115 5.339990 CGGGCGTCTCAAATTTTTCATAAT 58.660 37.500 0.00 0.00 0.00 1.28
115 116 6.491394 CGGGCGTCTCAAATTTTTCATAATA 58.509 36.000 0.00 0.00 0.00 0.98
116 117 7.138736 CGGGCGTCTCAAATTTTTCATAATAT 58.861 34.615 0.00 0.00 0.00 1.28
117 118 7.113404 CGGGCGTCTCAAATTTTTCATAATATG 59.887 37.037 0.00 0.00 0.00 1.78
118 119 8.134895 GGGCGTCTCAAATTTTTCATAATATGA 58.865 33.333 0.00 0.00 37.55 2.15
119 120 9.173939 GGCGTCTCAAATTTTTCATAATATGAG 57.826 33.333 2.98 0.00 40.94 2.90
120 121 8.685536 GCGTCTCAAATTTTTCATAATATGAGC 58.314 33.333 2.98 0.00 40.94 4.26
121 122 9.720667 CGTCTCAAATTTTTCATAATATGAGCA 57.279 29.630 2.98 0.00 40.94 4.26
123 124 9.740239 TCTCAAATTTTTCATAATATGAGCAGC 57.260 29.630 2.98 0.00 40.94 5.25
124 125 9.524106 CTCAAATTTTTCATAATATGAGCAGCA 57.476 29.630 2.98 0.00 40.94 4.41
125 126 9.524106 TCAAATTTTTCATAATATGAGCAGCAG 57.476 29.630 2.98 0.00 40.94 4.24
126 127 9.524106 CAAATTTTTCATAATATGAGCAGCAGA 57.476 29.630 2.98 0.00 40.94 4.26
134 135 8.509690 TCATAATATGAGCAGCAGAATAAAAGC 58.490 33.333 0.00 0.00 33.59 3.51
135 136 5.702349 ATATGAGCAGCAGAATAAAAGCC 57.298 39.130 0.00 0.00 0.00 4.35
136 137 2.794103 TGAGCAGCAGAATAAAAGCCA 58.206 42.857 0.00 0.00 0.00 4.75
137 138 2.751259 TGAGCAGCAGAATAAAAGCCAG 59.249 45.455 0.00 0.00 0.00 4.85
138 139 3.012518 GAGCAGCAGAATAAAAGCCAGA 58.987 45.455 0.00 0.00 0.00 3.86
139 140 2.751806 AGCAGCAGAATAAAAGCCAGAC 59.248 45.455 0.00 0.00 0.00 3.51
140 141 2.751806 GCAGCAGAATAAAAGCCAGACT 59.248 45.455 0.00 0.00 0.00 3.24
141 142 3.427233 GCAGCAGAATAAAAGCCAGACTG 60.427 47.826 0.00 0.00 0.00 3.51
142 143 4.005650 CAGCAGAATAAAAGCCAGACTGA 58.994 43.478 3.32 0.00 0.00 3.41
143 144 4.006319 AGCAGAATAAAAGCCAGACTGAC 58.994 43.478 3.32 0.00 0.00 3.51
144 145 3.181516 GCAGAATAAAAGCCAGACTGACG 60.182 47.826 3.32 0.00 0.00 4.35
145 146 3.372206 CAGAATAAAAGCCAGACTGACGG 59.628 47.826 3.32 0.00 0.00 4.79
146 147 2.403252 ATAAAAGCCAGACTGACGGG 57.597 50.000 3.32 0.00 36.93 5.28
147 148 0.323629 TAAAAGCCAGACTGACGGGG 59.676 55.000 3.32 0.00 34.46 5.73
148 149 2.411765 AAAAGCCAGACTGACGGGGG 62.412 60.000 3.32 0.00 34.46 5.40
149 150 3.846405 AAGCCAGACTGACGGGGGA 62.846 63.158 3.32 0.00 34.46 4.81
150 151 3.319198 GCCAGACTGACGGGGGAA 61.319 66.667 3.32 0.00 34.46 3.97
151 152 2.982130 CCAGACTGACGGGGGAAG 59.018 66.667 3.32 0.00 0.00 3.46
152 153 2.266055 CAGACTGACGGGGGAAGC 59.734 66.667 0.00 0.00 0.00 3.86
153 154 3.003763 AGACTGACGGGGGAAGCC 61.004 66.667 0.00 0.00 0.00 4.35
154 155 4.097361 GACTGACGGGGGAAGCCC 62.097 72.222 0.00 0.00 44.51 5.19
179 180 4.627611 CTGAACCAGCACATTCCATAAG 57.372 45.455 0.00 0.00 0.00 1.73
180 181 4.012374 CTGAACCAGCACATTCCATAAGT 58.988 43.478 0.00 0.00 0.00 2.24
181 182 4.009675 TGAACCAGCACATTCCATAAGTC 58.990 43.478 0.00 0.00 0.00 3.01
182 183 3.719268 ACCAGCACATTCCATAAGTCA 57.281 42.857 0.00 0.00 0.00 3.41
183 184 3.614092 ACCAGCACATTCCATAAGTCAG 58.386 45.455 0.00 0.00 0.00 3.51
184 185 3.264193 ACCAGCACATTCCATAAGTCAGA 59.736 43.478 0.00 0.00 0.00 3.27
185 186 3.624861 CCAGCACATTCCATAAGTCAGAC 59.375 47.826 0.00 0.00 0.00 3.51
186 187 4.256110 CAGCACATTCCATAAGTCAGACA 58.744 43.478 2.66 0.00 0.00 3.41
187 188 4.331992 CAGCACATTCCATAAGTCAGACAG 59.668 45.833 2.66 0.00 0.00 3.51
188 189 4.019860 AGCACATTCCATAAGTCAGACAGT 60.020 41.667 2.66 0.00 0.00 3.55
189 190 4.093998 GCACATTCCATAAGTCAGACAGTG 59.906 45.833 2.66 0.00 0.00 3.66
190 191 4.633126 CACATTCCATAAGTCAGACAGTGG 59.367 45.833 2.66 7.82 0.00 4.00
191 192 4.287067 ACATTCCATAAGTCAGACAGTGGT 59.713 41.667 14.86 0.00 0.00 4.16
192 193 3.961480 TCCATAAGTCAGACAGTGGTG 57.039 47.619 14.86 0.00 0.00 4.17
193 194 3.506398 TCCATAAGTCAGACAGTGGTGA 58.494 45.455 14.86 0.00 0.00 4.02
194 195 3.511540 TCCATAAGTCAGACAGTGGTGAG 59.488 47.826 14.86 0.00 0.00 3.51
195 196 3.368843 CCATAAGTCAGACAGTGGTGAGG 60.369 52.174 2.66 0.00 0.00 3.86
196 197 2.088104 AAGTCAGACAGTGGTGAGGA 57.912 50.000 2.66 0.00 0.00 3.71
197 198 2.088104 AGTCAGACAGTGGTGAGGAA 57.912 50.000 2.66 0.00 0.00 3.36
198 199 1.689273 AGTCAGACAGTGGTGAGGAAC 59.311 52.381 2.66 0.00 0.00 3.62
199 200 0.673985 TCAGACAGTGGTGAGGAACG 59.326 55.000 0.00 0.00 0.00 3.95
200 201 0.319900 CAGACAGTGGTGAGGAACGG 60.320 60.000 0.00 0.00 0.00 4.44
201 202 1.004918 GACAGTGGTGAGGAACGGG 60.005 63.158 0.00 0.00 0.00 5.28
202 203 2.347490 CAGTGGTGAGGAACGGGG 59.653 66.667 0.00 0.00 0.00 5.73
203 204 3.637273 AGTGGTGAGGAACGGGGC 61.637 66.667 0.00 0.00 0.00 5.80
204 205 3.948719 GTGGTGAGGAACGGGGCA 61.949 66.667 0.00 0.00 0.00 5.36
205 206 3.172106 TGGTGAGGAACGGGGCAA 61.172 61.111 0.00 0.00 0.00 4.52
206 207 2.671963 GGTGAGGAACGGGGCAAC 60.672 66.667 0.00 0.00 0.00 4.17
207 208 2.112297 GTGAGGAACGGGGCAACA 59.888 61.111 0.00 0.00 39.74 3.33
208 209 1.966451 GTGAGGAACGGGGCAACAG 60.966 63.158 0.00 0.00 39.74 3.16
209 210 3.056328 GAGGAACGGGGCAACAGC 61.056 66.667 0.00 0.00 39.74 4.40
241 242 2.991250 CCCAAATGGTACTCCTGTGAG 58.009 52.381 0.00 0.00 44.62 3.51
242 243 2.356125 CCCAAATGGTACTCCTGTGAGG 60.356 54.545 0.00 0.00 43.29 3.86
243 244 2.359900 CAAATGGTACTCCTGTGAGGC 58.640 52.381 0.00 0.00 43.29 4.70
244 245 1.656587 AATGGTACTCCTGTGAGGCA 58.343 50.000 0.00 0.00 43.29 4.75
245 246 0.905357 ATGGTACTCCTGTGAGGCAC 59.095 55.000 0.00 0.00 43.29 5.01
246 247 0.471022 TGGTACTCCTGTGAGGCACA 60.471 55.000 0.00 0.00 43.29 4.57
254 255 2.980233 GTGAGGCACACACCCTGC 60.980 66.667 10.29 0.00 43.98 4.85
255 256 3.487626 TGAGGCACACACCCTGCA 61.488 61.111 0.00 0.00 36.27 4.41
256 257 2.203337 GAGGCACACACCCTGCAA 60.203 61.111 0.00 0.00 36.27 4.08
257 258 2.519302 AGGCACACACCCTGCAAC 60.519 61.111 0.00 0.00 36.27 4.17
258 259 2.832661 GGCACACACCCTGCAACA 60.833 61.111 0.00 0.00 36.27 3.33
259 260 2.422231 GGCACACACCCTGCAACAA 61.422 57.895 0.00 0.00 36.27 2.83
260 261 1.515020 GCACACACCCTGCAACAAA 59.485 52.632 0.00 0.00 34.56 2.83
261 262 0.528249 GCACACACCCTGCAACAAAG 60.528 55.000 0.00 0.00 34.56 2.77
262 263 1.102154 CACACACCCTGCAACAAAGA 58.898 50.000 0.00 0.00 0.00 2.52
263 264 1.682854 CACACACCCTGCAACAAAGAT 59.317 47.619 0.00 0.00 0.00 2.40
264 265 1.956477 ACACACCCTGCAACAAAGATC 59.044 47.619 0.00 0.00 0.00 2.75
265 266 2.233271 CACACCCTGCAACAAAGATCT 58.767 47.619 0.00 0.00 0.00 2.75
266 267 2.227388 CACACCCTGCAACAAAGATCTC 59.773 50.000 0.00 0.00 0.00 2.75
267 268 2.158623 ACACCCTGCAACAAAGATCTCA 60.159 45.455 0.00 0.00 0.00 3.27
268 269 3.087031 CACCCTGCAACAAAGATCTCAT 58.913 45.455 0.00 0.00 0.00 2.90
269 270 3.087031 ACCCTGCAACAAAGATCTCATG 58.913 45.455 0.00 0.91 0.00 3.07
270 271 2.426024 CCCTGCAACAAAGATCTCATGG 59.574 50.000 11.82 1.32 0.00 3.66
271 272 3.349927 CCTGCAACAAAGATCTCATGGA 58.650 45.455 11.82 3.21 0.00 3.41
272 273 3.760151 CCTGCAACAAAGATCTCATGGAA 59.240 43.478 11.82 0.00 0.00 3.53
273 274 4.142447 CCTGCAACAAAGATCTCATGGAAG 60.142 45.833 11.82 4.08 0.00 3.46
274 275 3.192001 TGCAACAAAGATCTCATGGAAGC 59.808 43.478 11.82 11.68 0.00 3.86
275 276 3.192001 GCAACAAAGATCTCATGGAAGCA 59.808 43.478 11.82 0.00 0.00 3.91
276 277 4.321452 GCAACAAAGATCTCATGGAAGCAA 60.321 41.667 11.82 0.00 0.00 3.91
277 278 5.399858 CAACAAAGATCTCATGGAAGCAAG 58.600 41.667 11.82 0.00 0.00 4.01
278 279 4.660168 ACAAAGATCTCATGGAAGCAAGT 58.340 39.130 11.82 0.00 0.00 3.16
279 280 5.809001 ACAAAGATCTCATGGAAGCAAGTA 58.191 37.500 11.82 0.00 0.00 2.24
280 281 5.645497 ACAAAGATCTCATGGAAGCAAGTAC 59.355 40.000 11.82 0.00 0.00 2.73
281 282 5.426689 AAGATCTCATGGAAGCAAGTACA 57.573 39.130 0.00 0.00 0.00 2.90
282 283 5.627182 AGATCTCATGGAAGCAAGTACAT 57.373 39.130 0.00 0.00 0.00 2.29
283 284 5.999044 AGATCTCATGGAAGCAAGTACATT 58.001 37.500 0.00 0.00 0.00 2.71
284 285 5.821470 AGATCTCATGGAAGCAAGTACATTG 59.179 40.000 0.00 0.00 42.20 2.82
285 286 4.264253 TCTCATGGAAGCAAGTACATTGG 58.736 43.478 0.00 0.00 39.47 3.16
295 296 5.728351 GCAAGTACATTGGTAGCGATTAA 57.272 39.130 0.00 0.00 39.47 1.40
296 297 5.738370 GCAAGTACATTGGTAGCGATTAAG 58.262 41.667 0.00 0.00 39.47 1.85
297 298 5.277345 GCAAGTACATTGGTAGCGATTAAGG 60.277 44.000 0.00 0.00 39.47 2.69
298 299 5.609533 AGTACATTGGTAGCGATTAAGGT 57.390 39.130 0.00 0.00 0.00 3.50
299 300 5.985911 AGTACATTGGTAGCGATTAAGGTT 58.014 37.500 0.00 0.00 0.00 3.50
300 301 7.116075 AGTACATTGGTAGCGATTAAGGTTA 57.884 36.000 0.00 0.00 0.00 2.85
301 302 7.208080 AGTACATTGGTAGCGATTAAGGTTAG 58.792 38.462 0.00 0.00 0.00 2.34
302 303 4.814771 ACATTGGTAGCGATTAAGGTTAGC 59.185 41.667 0.00 0.00 0.00 3.09
303 304 3.464111 TGGTAGCGATTAAGGTTAGCC 57.536 47.619 0.00 0.00 0.00 3.93
304 305 2.223876 TGGTAGCGATTAAGGTTAGCCG 60.224 50.000 0.00 0.00 40.50 5.52
305 306 2.401351 GTAGCGATTAAGGTTAGCCGG 58.599 52.381 0.00 0.00 40.50 6.13
306 307 0.532196 AGCGATTAAGGTTAGCCGGC 60.532 55.000 21.89 21.89 40.50 6.13
307 308 0.532196 GCGATTAAGGTTAGCCGGCT 60.532 55.000 34.85 34.85 40.50 5.52
308 309 1.269936 GCGATTAAGGTTAGCCGGCTA 60.270 52.381 32.24 32.24 40.50 3.93
309 310 2.401351 CGATTAAGGTTAGCCGGCTAC 58.599 52.381 35.44 26.94 40.50 3.58
310 311 2.223876 CGATTAAGGTTAGCCGGCTACA 60.224 50.000 35.44 22.54 40.50 2.74
311 312 2.678471 TTAAGGTTAGCCGGCTACAC 57.322 50.000 35.44 30.26 40.50 2.90
312 313 1.559368 TAAGGTTAGCCGGCTACACA 58.441 50.000 35.44 19.11 40.50 3.72
313 314 0.688487 AAGGTTAGCCGGCTACACAA 59.312 50.000 35.44 20.58 40.50 3.33
314 315 0.249398 AGGTTAGCCGGCTACACAAG 59.751 55.000 35.44 0.00 40.50 3.16
323 324 3.861341 GCTACACAAGCCCAGATCA 57.139 52.632 0.00 0.00 46.25 2.92
324 325 2.113860 GCTACACAAGCCCAGATCAA 57.886 50.000 0.00 0.00 46.25 2.57
325 326 2.648059 GCTACACAAGCCCAGATCAAT 58.352 47.619 0.00 0.00 46.25 2.57
326 327 2.615912 GCTACACAAGCCCAGATCAATC 59.384 50.000 0.00 0.00 46.25 2.67
327 328 2.134789 ACACAAGCCCAGATCAATCC 57.865 50.000 0.00 0.00 0.00 3.01
328 329 1.341383 ACACAAGCCCAGATCAATCCC 60.341 52.381 0.00 0.00 0.00 3.85
329 330 1.002069 ACAAGCCCAGATCAATCCCA 58.998 50.000 0.00 0.00 0.00 4.37
330 331 1.572415 ACAAGCCCAGATCAATCCCAT 59.428 47.619 0.00 0.00 0.00 4.00
331 332 2.236766 CAAGCCCAGATCAATCCCATC 58.763 52.381 0.00 0.00 0.00 3.51
332 333 0.776176 AGCCCAGATCAATCCCATCC 59.224 55.000 0.00 0.00 0.00 3.51
333 334 0.479815 GCCCAGATCAATCCCATCCA 59.520 55.000 0.00 0.00 0.00 3.41
334 335 1.076677 GCCCAGATCAATCCCATCCAT 59.923 52.381 0.00 0.00 0.00 3.41
335 336 2.883058 GCCCAGATCAATCCCATCCATC 60.883 54.545 0.00 0.00 0.00 3.51
336 337 2.377531 CCCAGATCAATCCCATCCATCA 59.622 50.000 0.00 0.00 0.00 3.07
337 338 3.011369 CCCAGATCAATCCCATCCATCAT 59.989 47.826 0.00 0.00 0.00 2.45
338 339 4.228895 CCCAGATCAATCCCATCCATCATA 59.771 45.833 0.00 0.00 0.00 2.15
339 340 5.281349 CCCAGATCAATCCCATCCATCATAA 60.281 44.000 0.00 0.00 0.00 1.90
340 341 6.432581 CCAGATCAATCCCATCCATCATAAT 58.567 40.000 0.00 0.00 0.00 1.28
341 342 6.895756 CCAGATCAATCCCATCCATCATAATT 59.104 38.462 0.00 0.00 0.00 1.40
342 343 7.399191 CCAGATCAATCCCATCCATCATAATTT 59.601 37.037 0.00 0.00 0.00 1.82
343 344 8.812972 CAGATCAATCCCATCCATCATAATTTT 58.187 33.333 0.00 0.00 0.00 1.82
347 348 9.825706 TCAATCCCATCCATCATAATTTTATCA 57.174 29.630 0.00 0.00 0.00 2.15
350 351 9.604569 ATCCCATCCATCATAATTTTATCAACA 57.395 29.630 0.00 0.00 0.00 3.33
351 352 9.431690 TCCCATCCATCATAATTTTATCAACAA 57.568 29.630 0.00 0.00 0.00 2.83
352 353 9.701098 CCCATCCATCATAATTTTATCAACAAG 57.299 33.333 0.00 0.00 0.00 3.16
356 357 8.344831 TCCATCATAATTTTATCAACAAGAGCG 58.655 33.333 0.00 0.00 0.00 5.03
357 358 8.131100 CCATCATAATTTTATCAACAAGAGCGT 58.869 33.333 0.00 0.00 0.00 5.07
358 359 9.507280 CATCATAATTTTATCAACAAGAGCGTT 57.493 29.630 0.00 0.00 0.00 4.84
361 362 9.438291 CATAATTTTATCAACAAGAGCGTTAGG 57.562 33.333 0.00 0.00 0.00 2.69
362 363 4.939509 TTTATCAACAAGAGCGTTAGGC 57.060 40.909 0.00 0.00 44.05 3.93
374 375 3.175109 GCGTTAGGCTTAGTATGGTGT 57.825 47.619 0.00 0.00 39.11 4.16
375 376 2.864343 GCGTTAGGCTTAGTATGGTGTG 59.136 50.000 0.00 0.00 39.11 3.82
376 377 3.677976 GCGTTAGGCTTAGTATGGTGTGT 60.678 47.826 0.00 0.00 39.11 3.72
377 378 4.440525 GCGTTAGGCTTAGTATGGTGTGTA 60.441 45.833 0.00 0.00 39.11 2.90
378 379 5.653507 CGTTAGGCTTAGTATGGTGTGTAA 58.346 41.667 0.00 0.00 0.00 2.41
379 380 6.101332 CGTTAGGCTTAGTATGGTGTGTAAA 58.899 40.000 0.00 0.00 0.00 2.01
380 381 6.035327 CGTTAGGCTTAGTATGGTGTGTAAAC 59.965 42.308 0.00 0.00 0.00 2.01
381 382 5.492855 AGGCTTAGTATGGTGTGTAAACA 57.507 39.130 0.00 0.00 0.00 2.83
382 383 5.871834 AGGCTTAGTATGGTGTGTAAACAA 58.128 37.500 0.00 0.00 0.00 2.83
383 384 5.938125 AGGCTTAGTATGGTGTGTAAACAAG 59.062 40.000 0.00 0.00 0.00 3.16
384 385 5.123344 GGCTTAGTATGGTGTGTAAACAAGG 59.877 44.000 0.00 0.00 0.00 3.61
385 386 5.391629 GCTTAGTATGGTGTGTAAACAAGGC 60.392 44.000 0.00 0.00 0.00 4.35
386 387 4.093472 AGTATGGTGTGTAAACAAGGCA 57.907 40.909 0.00 0.00 0.00 4.75
387 388 4.072131 AGTATGGTGTGTAAACAAGGCAG 58.928 43.478 0.00 0.00 0.00 4.85
388 389 1.686355 TGGTGTGTAAACAAGGCAGG 58.314 50.000 0.00 0.00 0.00 4.85
389 390 1.213182 TGGTGTGTAAACAAGGCAGGA 59.787 47.619 0.00 0.00 0.00 3.86
390 391 2.303175 GGTGTGTAAACAAGGCAGGAA 58.697 47.619 0.00 0.00 0.00 3.36
391 392 2.691011 GGTGTGTAAACAAGGCAGGAAA 59.309 45.455 0.00 0.00 0.00 3.13
392 393 3.131400 GGTGTGTAAACAAGGCAGGAAAA 59.869 43.478 0.00 0.00 0.00 2.29
393 394 4.359706 GTGTGTAAACAAGGCAGGAAAAG 58.640 43.478 0.00 0.00 0.00 2.27
394 395 3.383185 TGTGTAAACAAGGCAGGAAAAGG 59.617 43.478 0.00 0.00 0.00 3.11
395 396 2.364002 TGTAAACAAGGCAGGAAAAGGC 59.636 45.455 0.00 0.00 0.00 4.35
396 397 1.494960 AAACAAGGCAGGAAAAGGCA 58.505 45.000 0.00 0.00 0.00 4.75
397 398 1.043022 AACAAGGCAGGAAAAGGCAG 58.957 50.000 0.00 0.00 0.00 4.85
398 399 0.106015 ACAAGGCAGGAAAAGGCAGT 60.106 50.000 0.00 0.00 0.00 4.40
399 400 0.316204 CAAGGCAGGAAAAGGCAGTG 59.684 55.000 0.00 0.00 0.00 3.66
400 401 0.829182 AAGGCAGGAAAAGGCAGTGG 60.829 55.000 0.00 0.00 0.00 4.00
401 402 1.228552 GGCAGGAAAAGGCAGTGGA 60.229 57.895 0.00 0.00 0.00 4.02
402 403 1.527433 GGCAGGAAAAGGCAGTGGAC 61.527 60.000 0.00 0.00 0.00 4.02
403 404 0.823356 GCAGGAAAAGGCAGTGGACA 60.823 55.000 0.00 0.00 0.00 4.02
404 405 1.242076 CAGGAAAAGGCAGTGGACAG 58.758 55.000 0.00 0.00 0.00 3.51
405 406 0.846693 AGGAAAAGGCAGTGGACAGT 59.153 50.000 0.00 0.00 0.00 3.55
406 407 0.954452 GGAAAAGGCAGTGGACAGTG 59.046 55.000 2.80 2.80 34.93 3.66
407 408 0.954452 GAAAAGGCAGTGGACAGTGG 59.046 55.000 9.03 0.00 32.50 4.00
408 409 0.258774 AAAAGGCAGTGGACAGTGGT 59.741 50.000 9.03 0.00 32.50 4.16
409 410 0.258774 AAAGGCAGTGGACAGTGGTT 59.741 50.000 9.03 0.00 32.50 3.67
410 411 0.179018 AAGGCAGTGGACAGTGGTTC 60.179 55.000 9.03 0.00 32.50 3.62
411 412 1.056700 AGGCAGTGGACAGTGGTTCT 61.057 55.000 9.03 0.00 32.50 3.01
419 420 4.454948 CAGTGGTTCTGGCGACAA 57.545 55.556 0.00 0.00 42.06 3.18
420 421 1.941812 CAGTGGTTCTGGCGACAAC 59.058 57.895 0.00 0.00 42.06 3.32
421 422 1.227853 AGTGGTTCTGGCGACAACC 60.228 57.895 5.08 5.08 40.91 3.77
422 423 1.525077 GTGGTTCTGGCGACAACCA 60.525 57.895 10.90 10.90 46.44 3.67
423 424 1.224870 TGGTTCTGGCGACAACCAA 59.775 52.632 12.54 0.00 45.82 3.67
424 425 1.098712 TGGTTCTGGCGACAACCAAC 61.099 55.000 12.54 5.65 45.82 3.77
425 426 1.278637 GTTCTGGCGACAACCAACG 59.721 57.895 0.00 0.00 42.06 4.10
426 427 1.144276 TTCTGGCGACAACCAACGA 59.856 52.632 0.00 0.00 42.06 3.85
427 428 0.250124 TTCTGGCGACAACCAACGAT 60.250 50.000 0.00 0.00 42.06 3.73
428 429 0.669318 TCTGGCGACAACCAACGATC 60.669 55.000 0.00 0.00 42.06 3.69
429 430 0.670546 CTGGCGACAACCAACGATCT 60.671 55.000 0.00 0.00 42.06 2.75
430 431 0.604073 TGGCGACAACCAACGATCTA 59.396 50.000 0.00 0.00 36.55 1.98
431 432 1.278238 GGCGACAACCAACGATCTAG 58.722 55.000 0.00 0.00 0.00 2.43
432 433 0.645868 GCGACAACCAACGATCTAGC 59.354 55.000 0.00 0.00 0.00 3.42
433 434 1.278238 CGACAACCAACGATCTAGCC 58.722 55.000 0.00 0.00 0.00 3.93
434 435 1.403647 CGACAACCAACGATCTAGCCA 60.404 52.381 0.00 0.00 0.00 4.75
435 436 2.271800 GACAACCAACGATCTAGCCAG 58.728 52.381 0.00 0.00 0.00 4.85
436 437 1.899814 ACAACCAACGATCTAGCCAGA 59.100 47.619 0.00 0.00 34.56 3.86
437 438 2.301870 ACAACCAACGATCTAGCCAGAA 59.698 45.455 0.00 0.00 33.50 3.02
438 439 3.244422 ACAACCAACGATCTAGCCAGAAA 60.244 43.478 0.00 0.00 33.50 2.52
439 440 3.695830 ACCAACGATCTAGCCAGAAAA 57.304 42.857 0.00 0.00 33.50 2.29
440 441 4.015872 ACCAACGATCTAGCCAGAAAAA 57.984 40.909 0.00 0.00 33.50 1.94
441 442 4.003648 ACCAACGATCTAGCCAGAAAAAG 58.996 43.478 0.00 0.00 33.50 2.27
442 443 3.375299 CCAACGATCTAGCCAGAAAAAGG 59.625 47.826 0.00 0.00 33.50 3.11
443 444 3.983044 ACGATCTAGCCAGAAAAAGGT 57.017 42.857 0.00 0.00 33.50 3.50
444 445 4.287766 ACGATCTAGCCAGAAAAAGGTT 57.712 40.909 0.00 0.00 33.50 3.50
445 446 4.003648 ACGATCTAGCCAGAAAAAGGTTG 58.996 43.478 0.00 0.00 33.50 3.77
446 447 4.253685 CGATCTAGCCAGAAAAAGGTTGA 58.746 43.478 0.00 0.00 33.50 3.18
447 448 4.331168 CGATCTAGCCAGAAAAAGGTTGAG 59.669 45.833 0.00 0.00 33.50 3.02
448 449 4.021102 TCTAGCCAGAAAAAGGTTGAGG 57.979 45.455 0.00 0.00 0.00 3.86
449 450 3.650942 TCTAGCCAGAAAAAGGTTGAGGA 59.349 43.478 0.00 0.00 0.00 3.71
450 451 3.312736 AGCCAGAAAAAGGTTGAGGAA 57.687 42.857 0.00 0.00 0.00 3.36
451 452 2.959030 AGCCAGAAAAAGGTTGAGGAAC 59.041 45.455 0.00 0.00 0.00 3.62
460 461 2.941210 GTTGAGGAACCATTGCCGA 58.059 52.632 0.00 0.00 0.00 5.54
461 462 1.463674 GTTGAGGAACCATTGCCGAT 58.536 50.000 0.00 0.00 0.00 4.18
462 463 2.639065 GTTGAGGAACCATTGCCGATA 58.361 47.619 0.00 0.00 0.00 2.92
463 464 2.614057 GTTGAGGAACCATTGCCGATAG 59.386 50.000 0.00 0.00 0.00 2.08
464 465 1.837439 TGAGGAACCATTGCCGATAGT 59.163 47.619 0.00 0.00 0.00 2.12
465 466 3.035363 TGAGGAACCATTGCCGATAGTA 58.965 45.455 0.00 0.00 0.00 1.82
466 467 3.452990 TGAGGAACCATTGCCGATAGTAA 59.547 43.478 0.00 0.00 0.00 2.24
467 468 3.805207 AGGAACCATTGCCGATAGTAAC 58.195 45.455 0.00 0.00 0.00 2.50
468 469 2.876550 GGAACCATTGCCGATAGTAACC 59.123 50.000 0.00 0.00 0.00 2.85
469 470 3.433173 GGAACCATTGCCGATAGTAACCT 60.433 47.826 0.00 0.00 0.00 3.50
470 471 3.194005 ACCATTGCCGATAGTAACCTG 57.806 47.619 0.00 0.00 0.00 4.00
471 472 2.504175 ACCATTGCCGATAGTAACCTGT 59.496 45.455 0.00 0.00 0.00 4.00
472 473 2.872245 CCATTGCCGATAGTAACCTGTG 59.128 50.000 0.00 0.00 0.00 3.66
473 474 3.431626 CCATTGCCGATAGTAACCTGTGA 60.432 47.826 0.00 0.00 0.00 3.58
474 475 3.965379 TTGCCGATAGTAACCTGTGAA 57.035 42.857 0.00 0.00 0.00 3.18
475 476 3.965379 TGCCGATAGTAACCTGTGAAA 57.035 42.857 0.00 0.00 0.00 2.69
476 477 4.481368 TGCCGATAGTAACCTGTGAAAT 57.519 40.909 0.00 0.00 0.00 2.17
477 478 4.439057 TGCCGATAGTAACCTGTGAAATC 58.561 43.478 0.00 0.00 0.00 2.17
478 479 4.161565 TGCCGATAGTAACCTGTGAAATCT 59.838 41.667 0.00 0.00 0.00 2.40
479 480 4.745620 GCCGATAGTAACCTGTGAAATCTC 59.254 45.833 0.00 0.00 0.00 2.75
480 481 5.452077 GCCGATAGTAACCTGTGAAATCTCT 60.452 44.000 0.00 0.00 0.00 3.10
481 482 6.210078 CCGATAGTAACCTGTGAAATCTCTC 58.790 44.000 0.00 0.00 0.00 3.20
482 483 5.910166 CGATAGTAACCTGTGAAATCTCTCG 59.090 44.000 0.00 0.00 0.00 4.04
483 484 6.238402 CGATAGTAACCTGTGAAATCTCTCGA 60.238 42.308 0.00 0.00 0.00 4.04
484 485 5.723672 AGTAACCTGTGAAATCTCTCGAA 57.276 39.130 0.00 0.00 0.00 3.71
485 486 6.287589 AGTAACCTGTGAAATCTCTCGAAT 57.712 37.500 0.00 0.00 0.00 3.34
486 487 7.406031 AGTAACCTGTGAAATCTCTCGAATA 57.594 36.000 0.00 0.00 0.00 1.75
487 488 7.484975 AGTAACCTGTGAAATCTCTCGAATAG 58.515 38.462 0.00 0.00 0.00 1.73
488 489 5.923733 ACCTGTGAAATCTCTCGAATAGT 57.076 39.130 0.00 0.00 0.00 2.12
489 490 5.655488 ACCTGTGAAATCTCTCGAATAGTG 58.345 41.667 0.00 0.00 0.00 2.74
490 491 5.186021 ACCTGTGAAATCTCTCGAATAGTGT 59.814 40.000 0.00 0.00 0.00 3.55
491 492 5.518128 CCTGTGAAATCTCTCGAATAGTGTG 59.482 44.000 0.00 0.00 0.00 3.82
492 493 4.864806 TGTGAAATCTCTCGAATAGTGTGC 59.135 41.667 0.00 0.00 0.00 4.57
493 494 4.864806 GTGAAATCTCTCGAATAGTGTGCA 59.135 41.667 0.00 0.00 0.00 4.57
494 495 5.348724 GTGAAATCTCTCGAATAGTGTGCAA 59.651 40.000 0.00 0.00 0.00 4.08
495 496 5.578336 TGAAATCTCTCGAATAGTGTGCAAG 59.422 40.000 0.00 0.00 0.00 4.01
496 497 4.727507 ATCTCTCGAATAGTGTGCAAGT 57.272 40.909 0.00 0.00 0.00 3.16
497 498 3.838120 TCTCTCGAATAGTGTGCAAGTG 58.162 45.455 0.00 0.00 0.00 3.16
498 499 3.255888 TCTCTCGAATAGTGTGCAAGTGT 59.744 43.478 0.00 0.00 0.00 3.55
499 500 3.990092 TCTCGAATAGTGTGCAAGTGTT 58.010 40.909 0.00 0.00 0.00 3.32
500 501 4.377021 TCTCGAATAGTGTGCAAGTGTTT 58.623 39.130 0.00 0.00 0.00 2.83
501 502 4.211164 TCTCGAATAGTGTGCAAGTGTTTG 59.789 41.667 0.00 0.00 37.36 2.93
502 503 4.123506 TCGAATAGTGTGCAAGTGTTTGA 58.876 39.130 0.00 0.00 36.36 2.69
503 504 4.572795 TCGAATAGTGTGCAAGTGTTTGAA 59.427 37.500 0.00 0.00 36.36 2.69
504 505 5.065346 TCGAATAGTGTGCAAGTGTTTGAAA 59.935 36.000 0.00 0.00 36.36 2.69
505 506 5.741510 CGAATAGTGTGCAAGTGTTTGAAAA 59.258 36.000 0.00 0.00 36.36 2.29
506 507 6.417635 CGAATAGTGTGCAAGTGTTTGAAAAT 59.582 34.615 0.00 0.00 36.36 1.82
507 508 7.589587 CGAATAGTGTGCAAGTGTTTGAAAATA 59.410 33.333 0.00 0.00 36.36 1.40
508 509 8.801715 AATAGTGTGCAAGTGTTTGAAAATAG 57.198 30.769 0.00 0.00 36.36 1.73
509 510 5.043248 AGTGTGCAAGTGTTTGAAAATAGC 58.957 37.500 0.00 0.00 36.36 2.97
510 511 5.043248 GTGTGCAAGTGTTTGAAAATAGCT 58.957 37.500 0.00 0.00 36.36 3.32
511 512 5.519927 GTGTGCAAGTGTTTGAAAATAGCTT 59.480 36.000 0.00 0.00 36.36 3.74
512 513 6.035975 GTGTGCAAGTGTTTGAAAATAGCTTT 59.964 34.615 0.00 0.00 36.36 3.51
513 514 7.221838 GTGTGCAAGTGTTTGAAAATAGCTTTA 59.778 33.333 0.00 0.00 36.36 1.85
514 515 7.221838 TGTGCAAGTGTTTGAAAATAGCTTTAC 59.778 33.333 0.00 0.00 36.36 2.01
515 516 6.699642 TGCAAGTGTTTGAAAATAGCTTTACC 59.300 34.615 0.00 0.00 36.36 2.85
516 517 6.699642 GCAAGTGTTTGAAAATAGCTTTACCA 59.300 34.615 0.00 0.00 36.36 3.25
517 518 7.223777 GCAAGTGTTTGAAAATAGCTTTACCAA 59.776 33.333 0.00 0.00 36.36 3.67
518 519 8.755018 CAAGTGTTTGAAAATAGCTTTACCAAG 58.245 33.333 0.00 0.00 36.36 3.61
519 520 7.433680 AGTGTTTGAAAATAGCTTTACCAAGG 58.566 34.615 0.00 0.00 0.00 3.61
520 521 7.286775 AGTGTTTGAAAATAGCTTTACCAAGGA 59.713 33.333 0.00 0.00 0.00 3.36
521 522 7.923878 GTGTTTGAAAATAGCTTTACCAAGGAA 59.076 33.333 0.00 0.00 0.00 3.36
522 523 8.141268 TGTTTGAAAATAGCTTTACCAAGGAAG 58.859 33.333 0.00 0.00 0.00 3.46
523 524 6.834168 TGAAAATAGCTTTACCAAGGAAGG 57.166 37.500 0.00 0.00 0.00 3.46
524 525 6.548321 TGAAAATAGCTTTACCAAGGAAGGA 58.452 36.000 0.00 0.00 0.00 3.36
525 526 6.659242 TGAAAATAGCTTTACCAAGGAAGGAG 59.341 38.462 0.00 0.00 0.00 3.69
526 527 4.779993 ATAGCTTTACCAAGGAAGGAGG 57.220 45.455 0.00 0.00 0.00 4.30
527 528 1.004862 AGCTTTACCAAGGAAGGAGGC 59.995 52.381 0.00 0.00 0.00 4.70
528 529 1.739067 CTTTACCAAGGAAGGAGGCG 58.261 55.000 0.00 0.00 0.00 5.52
529 530 1.003233 CTTTACCAAGGAAGGAGGCGT 59.997 52.381 0.00 0.00 0.00 5.68
544 545 7.362660 GGAAGGAGGCGTTTTTAATCTTGTTAT 60.363 37.037 0.00 0.00 0.00 1.89
601 602 7.956943 CGAATTGGTCCAAGAAAATAATTTTGC 59.043 33.333 10.72 0.00 31.94 3.68
728 739 1.456518 CTGGAGCTCCTCGGATGGA 60.457 63.158 32.28 9.62 36.82 3.41
729 740 0.831288 CTGGAGCTCCTCGGATGGAT 60.831 60.000 32.28 0.00 35.30 3.41
762 792 1.059657 CGCAAATCGCCACTTTGTCG 61.060 55.000 0.00 0.00 36.26 4.35
772 810 2.928116 GCCACTTTGTCGGTCAGTATAC 59.072 50.000 0.00 0.00 0.00 1.47
788 826 4.885907 CAGTATACCCTTTGTCGTCCTAGA 59.114 45.833 0.00 0.00 0.00 2.43
792 830 1.749634 CCCTTTGTCGTCCTAGATCGT 59.250 52.381 0.00 0.00 0.00 3.73
985 1063 1.613317 TACATCACCGGCCCACTCAG 61.613 60.000 0.00 0.00 0.00 3.35
990 1068 4.760047 CCGGCCCACTCAGGAACG 62.760 72.222 0.00 0.00 41.22 3.95
991 1069 4.003788 CGGCCCACTCAGGAACGT 62.004 66.667 0.00 0.00 41.22 3.99
1238 3070 2.130426 GCTGCTCCCTCATCTCCGA 61.130 63.158 0.00 0.00 0.00 4.55
1386 3218 1.503542 CTTCCGCTGCGCTTGATTT 59.496 52.632 18.00 0.00 0.00 2.17
1397 3248 2.291465 GCGCTTGATTTGATCAGCCATA 59.709 45.455 0.00 0.00 40.94 2.74
1425 3276 2.406401 GCGTGTGCATGATCAGCC 59.594 61.111 0.09 0.00 42.15 4.85
1426 3277 2.400962 GCGTGTGCATGATCAGCCA 61.401 57.895 0.09 0.00 42.15 4.75
1427 3278 1.721664 GCGTGTGCATGATCAGCCAT 61.722 55.000 0.09 0.00 42.15 4.40
1428 3279 1.585297 CGTGTGCATGATCAGCCATA 58.415 50.000 0.09 0.00 0.00 2.74
1429 3280 1.529865 CGTGTGCATGATCAGCCATAG 59.470 52.381 0.09 2.22 0.00 2.23
1430 3281 2.569059 GTGTGCATGATCAGCCATAGT 58.431 47.619 0.09 0.00 0.00 2.12
1431 3282 2.289820 GTGTGCATGATCAGCCATAGTG 59.710 50.000 0.09 0.00 0.00 2.74
1432 3283 1.266175 GTGCATGATCAGCCATAGTGC 59.734 52.381 0.09 4.86 0.00 4.40
1433 3284 1.134037 TGCATGATCAGCCATAGTGCA 60.134 47.619 12.61 12.61 0.00 4.57
1434 3285 2.160205 GCATGATCAGCCATAGTGCAT 58.840 47.619 9.71 0.00 0.00 3.96
1435 3286 2.095212 GCATGATCAGCCATAGTGCATG 60.095 50.000 9.71 0.00 35.87 4.06
1436 3287 1.601166 TGATCAGCCATAGTGCATGC 58.399 50.000 11.82 11.82 32.84 4.06
1437 3288 1.134037 TGATCAGCCATAGTGCATGCA 60.134 47.619 18.46 18.46 32.84 3.96
1438 3289 2.160205 GATCAGCCATAGTGCATGCAT 58.840 47.619 25.64 15.04 32.84 3.96
1439 3290 1.314730 TCAGCCATAGTGCATGCATG 58.685 50.000 25.64 22.70 32.84 4.06
1501 3814 1.130749 TGTGCGTTGTGTTAAAAGCGT 59.869 42.857 0.00 0.00 37.35 5.07
1507 3820 4.373619 GCGTTGTGTTAAAAGCGTCATTTC 60.374 41.667 0.00 0.00 0.00 2.17
1546 4749 7.648112 AGCACTGTATCTTGTACGTATATTGTG 59.352 37.037 0.00 3.06 0.00 3.33
1603 6382 5.760253 AGCATGCACGTTTAATTATAGCTCT 59.240 36.000 21.98 0.00 0.00 4.09
1878 6657 0.399949 TACCCCTTGAGGCCGATCAT 60.400 55.000 0.00 0.00 0.00 2.45
2090 6894 3.063084 GGAGTCGAGGTCCGTGCT 61.063 66.667 0.00 0.00 39.75 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.186903 CTATGGTCGCACCGCCTT 59.813 61.111 1.66 0.00 42.58 4.35
1 2 3.849951 CCTATGGTCGCACCGCCT 61.850 66.667 1.66 0.00 42.58 5.52
2 3 4.910585 CCCTATGGTCGCACCGCC 62.911 72.222 1.66 0.00 42.58 6.13
3 4 4.157120 ACCCTATGGTCGCACCGC 62.157 66.667 1.66 0.00 43.06 5.68
12 13 7.147811 GCTATTATCTCTGACCTAACCCTATGG 60.148 44.444 0.00 0.00 37.80 2.74
13 14 7.147811 GGCTATTATCTCTGACCTAACCCTATG 60.148 44.444 0.00 0.00 0.00 2.23
14 15 6.898521 GGCTATTATCTCTGACCTAACCCTAT 59.101 42.308 0.00 0.00 0.00 2.57
15 16 6.254522 GGCTATTATCTCTGACCTAACCCTA 58.745 44.000 0.00 0.00 0.00 3.53
16 17 5.088026 GGCTATTATCTCTGACCTAACCCT 58.912 45.833 0.00 0.00 0.00 4.34
17 18 4.223255 GGGCTATTATCTCTGACCTAACCC 59.777 50.000 0.00 0.00 0.00 4.11
18 19 5.088026 AGGGCTATTATCTCTGACCTAACC 58.912 45.833 0.00 0.00 35.92 2.85
19 20 7.778185 TTAGGGCTATTATCTCTGACCTAAC 57.222 40.000 2.38 0.00 43.09 2.34
21 22 9.476928 GTAATTAGGGCTATTATCTCTGACCTA 57.523 37.037 0.00 0.00 39.03 3.08
22 23 7.956315 TGTAATTAGGGCTATTATCTCTGACCT 59.044 37.037 0.00 0.00 41.48 3.85
23 24 8.135382 TGTAATTAGGGCTATTATCTCTGACC 57.865 38.462 0.00 0.00 0.00 4.02
24 25 9.810545 GATGTAATTAGGGCTATTATCTCTGAC 57.189 37.037 0.00 0.00 0.00 3.51
25 26 9.547279 TGATGTAATTAGGGCTATTATCTCTGA 57.453 33.333 0.00 0.00 0.00 3.27
40 41 8.527810 GTCCCTCTCTCCTAATGATGTAATTAG 58.472 40.741 0.00 0.00 39.07 1.73
41 42 8.010697 TGTCCCTCTCTCCTAATGATGTAATTA 58.989 37.037 0.00 0.00 0.00 1.40
42 43 6.846505 TGTCCCTCTCTCCTAATGATGTAATT 59.153 38.462 0.00 0.00 0.00 1.40
43 44 6.385443 TGTCCCTCTCTCCTAATGATGTAAT 58.615 40.000 0.00 0.00 0.00 1.89
44 45 5.777449 TGTCCCTCTCTCCTAATGATGTAA 58.223 41.667 0.00 0.00 0.00 2.41
45 46 5.403558 TGTCCCTCTCTCCTAATGATGTA 57.596 43.478 0.00 0.00 0.00 2.29
46 47 4.271807 TGTCCCTCTCTCCTAATGATGT 57.728 45.455 0.00 0.00 0.00 3.06
47 48 4.653341 ACTTGTCCCTCTCTCCTAATGATG 59.347 45.833 0.00 0.00 0.00 3.07
48 49 4.889780 ACTTGTCCCTCTCTCCTAATGAT 58.110 43.478 0.00 0.00 0.00 2.45
49 50 4.338795 ACTTGTCCCTCTCTCCTAATGA 57.661 45.455 0.00 0.00 0.00 2.57
50 51 4.141824 GGAACTTGTCCCTCTCTCCTAATG 60.142 50.000 0.00 0.00 41.10 1.90
51 52 4.034410 GGAACTTGTCCCTCTCTCCTAAT 58.966 47.826 0.00 0.00 41.10 1.73
52 53 3.442076 GGAACTTGTCCCTCTCTCCTAA 58.558 50.000 0.00 0.00 41.10 2.69
53 54 3.103080 GGAACTTGTCCCTCTCTCCTA 57.897 52.381 0.00 0.00 41.10 2.94
54 55 1.945580 GGAACTTGTCCCTCTCTCCT 58.054 55.000 0.00 0.00 41.10 3.69
64 65 4.617959 GCCAAAACCTTTAGGAACTTGTC 58.382 43.478 2.06 0.00 41.75 3.18
65 66 3.067601 CGCCAAAACCTTTAGGAACTTGT 59.932 43.478 2.06 0.00 41.75 3.16
66 67 3.067601 ACGCCAAAACCTTTAGGAACTTG 59.932 43.478 2.06 3.14 41.75 3.16
67 68 3.293337 ACGCCAAAACCTTTAGGAACTT 58.707 40.909 2.06 0.00 41.75 2.66
68 69 2.940158 ACGCCAAAACCTTTAGGAACT 58.060 42.857 2.06 0.00 46.37 3.01
69 70 3.377439 CAACGCCAAAACCTTTAGGAAC 58.623 45.455 2.06 0.00 38.94 3.62
70 71 2.223852 GCAACGCCAAAACCTTTAGGAA 60.224 45.455 2.06 0.00 38.94 3.36
71 72 1.338655 GCAACGCCAAAACCTTTAGGA 59.661 47.619 2.06 0.00 38.94 2.94
72 73 1.778334 GCAACGCCAAAACCTTTAGG 58.222 50.000 0.00 0.00 42.17 2.69
73 74 1.404477 CGCAACGCCAAAACCTTTAG 58.596 50.000 0.00 0.00 0.00 1.85
74 75 0.030908 CCGCAACGCCAAAACCTTTA 59.969 50.000 0.00 0.00 0.00 1.85
75 76 1.227118 CCGCAACGCCAAAACCTTT 60.227 52.632 0.00 0.00 0.00 3.11
76 77 2.415426 CCGCAACGCCAAAACCTT 59.585 55.556 0.00 0.00 0.00 3.50
77 78 3.601685 CCCGCAACGCCAAAACCT 61.602 61.111 0.00 0.00 0.00 3.50
86 87 2.182614 AATTTGAGACGCCCGCAACG 62.183 55.000 0.00 0.00 34.30 4.10
87 88 0.039527 AAATTTGAGACGCCCGCAAC 60.040 50.000 0.00 0.00 34.30 4.17
88 89 0.671251 AAAATTTGAGACGCCCGCAA 59.329 45.000 0.00 0.00 32.69 4.85
89 90 0.671251 AAAAATTTGAGACGCCCGCA 59.329 45.000 0.00 0.00 0.00 5.69
90 91 1.335506 TGAAAAATTTGAGACGCCCGC 60.336 47.619 0.00 0.00 0.00 6.13
91 92 2.697431 TGAAAAATTTGAGACGCCCG 57.303 45.000 0.00 0.00 0.00 6.13
92 93 8.134895 TCATATTATGAAAAATTTGAGACGCCC 58.865 33.333 3.84 0.00 36.11 6.13
93 94 9.173939 CTCATATTATGAAAAATTTGAGACGCC 57.826 33.333 7.73 0.00 42.64 5.68
94 95 8.685536 GCTCATATTATGAAAAATTTGAGACGC 58.314 33.333 16.26 0.17 42.64 5.19
95 96 9.720667 TGCTCATATTATGAAAAATTTGAGACG 57.279 29.630 16.26 0.00 42.64 4.18
97 98 9.740239 GCTGCTCATATTATGAAAAATTTGAGA 57.260 29.630 16.26 5.68 42.64 3.27
98 99 9.524106 TGCTGCTCATATTATGAAAAATTTGAG 57.476 29.630 7.73 10.70 42.77 3.02
99 100 9.524106 CTGCTGCTCATATTATGAAAAATTTGA 57.476 29.630 7.73 0.00 39.11 2.69
100 101 9.524106 TCTGCTGCTCATATTATGAAAAATTTG 57.476 29.630 7.73 0.00 39.11 2.32
108 109 8.509690 GCTTTTATTCTGCTGCTCATATTATGA 58.490 33.333 6.23 6.23 37.76 2.15
109 110 7.754027 GGCTTTTATTCTGCTGCTCATATTATG 59.246 37.037 0.00 0.00 0.00 1.90
110 111 7.449395 TGGCTTTTATTCTGCTGCTCATATTAT 59.551 33.333 0.00 0.00 0.00 1.28
111 112 6.772233 TGGCTTTTATTCTGCTGCTCATATTA 59.228 34.615 0.00 0.00 0.00 0.98
112 113 5.595542 TGGCTTTTATTCTGCTGCTCATATT 59.404 36.000 0.00 0.00 0.00 1.28
113 114 5.135383 TGGCTTTTATTCTGCTGCTCATAT 58.865 37.500 0.00 0.00 0.00 1.78
114 115 4.525996 TGGCTTTTATTCTGCTGCTCATA 58.474 39.130 0.00 0.00 0.00 2.15
115 116 3.359033 TGGCTTTTATTCTGCTGCTCAT 58.641 40.909 0.00 0.00 0.00 2.90
116 117 2.751259 CTGGCTTTTATTCTGCTGCTCA 59.249 45.455 0.00 0.00 0.00 4.26
117 118 3.012518 TCTGGCTTTTATTCTGCTGCTC 58.987 45.455 0.00 0.00 0.00 4.26
118 119 2.751806 GTCTGGCTTTTATTCTGCTGCT 59.248 45.455 0.00 0.00 0.00 4.24
119 120 2.751806 AGTCTGGCTTTTATTCTGCTGC 59.248 45.455 0.00 0.00 0.00 5.25
120 121 4.005650 TCAGTCTGGCTTTTATTCTGCTG 58.994 43.478 0.00 0.00 0.00 4.41
121 122 4.006319 GTCAGTCTGGCTTTTATTCTGCT 58.994 43.478 0.00 0.00 0.00 4.24
122 123 3.181516 CGTCAGTCTGGCTTTTATTCTGC 60.182 47.826 2.39 0.00 0.00 4.26
123 124 3.372206 CCGTCAGTCTGGCTTTTATTCTG 59.628 47.826 2.39 0.00 0.00 3.02
124 125 3.600388 CCGTCAGTCTGGCTTTTATTCT 58.400 45.455 2.39 0.00 0.00 2.40
125 126 2.678336 CCCGTCAGTCTGGCTTTTATTC 59.322 50.000 2.39 0.00 0.00 1.75
126 127 2.618045 CCCCGTCAGTCTGGCTTTTATT 60.618 50.000 2.39 0.00 0.00 1.40
127 128 1.065418 CCCCGTCAGTCTGGCTTTTAT 60.065 52.381 2.39 0.00 0.00 1.40
128 129 0.323629 CCCCGTCAGTCTGGCTTTTA 59.676 55.000 2.39 0.00 0.00 1.52
129 130 1.073199 CCCCGTCAGTCTGGCTTTT 59.927 57.895 2.39 0.00 0.00 2.27
130 131 2.750350 CCCCGTCAGTCTGGCTTT 59.250 61.111 2.39 0.00 0.00 3.51
131 132 3.322466 CCCCCGTCAGTCTGGCTT 61.322 66.667 2.39 0.00 0.00 4.35
132 133 3.846405 TTCCCCCGTCAGTCTGGCT 62.846 63.158 2.39 0.00 0.00 4.75
133 134 3.316573 CTTCCCCCGTCAGTCTGGC 62.317 68.421 0.00 0.00 0.00 4.85
134 135 2.982130 CTTCCCCCGTCAGTCTGG 59.018 66.667 0.00 0.00 0.00 3.86
135 136 2.266055 GCTTCCCCCGTCAGTCTG 59.734 66.667 0.00 0.00 0.00 3.51
136 137 3.003763 GGCTTCCCCCGTCAGTCT 61.004 66.667 0.00 0.00 0.00 3.24
137 138 4.097361 GGGCTTCCCCCGTCAGTC 62.097 72.222 0.00 0.00 45.91 3.51
158 159 4.012374 ACTTATGGAATGTGCTGGTTCAG 58.988 43.478 0.00 0.00 34.12 3.02
159 160 4.009675 GACTTATGGAATGTGCTGGTTCA 58.990 43.478 0.00 0.00 0.00 3.18
160 161 4.009675 TGACTTATGGAATGTGCTGGTTC 58.990 43.478 0.00 0.00 0.00 3.62
161 162 4.012374 CTGACTTATGGAATGTGCTGGTT 58.988 43.478 0.00 0.00 0.00 3.67
162 163 3.264193 TCTGACTTATGGAATGTGCTGGT 59.736 43.478 0.00 0.00 0.00 4.00
163 164 3.624861 GTCTGACTTATGGAATGTGCTGG 59.375 47.826 0.00 0.00 0.00 4.85
164 165 4.256110 TGTCTGACTTATGGAATGTGCTG 58.744 43.478 9.51 0.00 0.00 4.41
165 166 4.019860 ACTGTCTGACTTATGGAATGTGCT 60.020 41.667 9.51 0.00 0.00 4.40
166 167 4.093998 CACTGTCTGACTTATGGAATGTGC 59.906 45.833 9.51 0.00 0.00 4.57
167 168 4.633126 CCACTGTCTGACTTATGGAATGTG 59.367 45.833 15.92 8.22 0.00 3.21
168 169 4.287067 ACCACTGTCTGACTTATGGAATGT 59.713 41.667 23.33 6.58 0.00 2.71
169 170 4.633126 CACCACTGTCTGACTTATGGAATG 59.367 45.833 23.33 13.31 0.00 2.67
170 171 4.532126 TCACCACTGTCTGACTTATGGAAT 59.468 41.667 23.33 7.37 0.00 3.01
171 172 3.901222 TCACCACTGTCTGACTTATGGAA 59.099 43.478 23.33 13.02 0.00 3.53
172 173 3.506398 TCACCACTGTCTGACTTATGGA 58.494 45.455 23.33 8.01 0.00 3.41
173 174 3.368843 CCTCACCACTGTCTGACTTATGG 60.369 52.174 18.06 18.06 0.00 2.74
174 175 3.511540 TCCTCACCACTGTCTGACTTATG 59.488 47.826 9.51 4.69 0.00 1.90
175 176 3.779444 TCCTCACCACTGTCTGACTTAT 58.221 45.455 9.51 0.00 0.00 1.73
176 177 3.238788 TCCTCACCACTGTCTGACTTA 57.761 47.619 9.51 0.00 0.00 2.24
177 178 2.088104 TCCTCACCACTGTCTGACTT 57.912 50.000 9.51 0.00 0.00 3.01
178 179 1.689273 GTTCCTCACCACTGTCTGACT 59.311 52.381 9.51 0.00 0.00 3.41
179 180 1.603172 CGTTCCTCACCACTGTCTGAC 60.603 57.143 0.00 0.00 0.00 3.51
180 181 0.673985 CGTTCCTCACCACTGTCTGA 59.326 55.000 0.00 0.00 0.00 3.27
181 182 0.319900 CCGTTCCTCACCACTGTCTG 60.320 60.000 0.00 0.00 0.00 3.51
182 183 1.472662 CCCGTTCCTCACCACTGTCT 61.473 60.000 0.00 0.00 0.00 3.41
183 184 1.004918 CCCGTTCCTCACCACTGTC 60.005 63.158 0.00 0.00 0.00 3.51
184 185 2.516888 CCCCGTTCCTCACCACTGT 61.517 63.158 0.00 0.00 0.00 3.55
185 186 2.347490 CCCCGTTCCTCACCACTG 59.653 66.667 0.00 0.00 0.00 3.66
186 187 3.637273 GCCCCGTTCCTCACCACT 61.637 66.667 0.00 0.00 0.00 4.00
187 188 3.485346 TTGCCCCGTTCCTCACCAC 62.485 63.158 0.00 0.00 0.00 4.16
188 189 3.172106 TTGCCCCGTTCCTCACCA 61.172 61.111 0.00 0.00 0.00 4.17
189 190 2.671963 GTTGCCCCGTTCCTCACC 60.672 66.667 0.00 0.00 0.00 4.02
190 191 1.966451 CTGTTGCCCCGTTCCTCAC 60.966 63.158 0.00 0.00 0.00 3.51
191 192 2.429930 CTGTTGCCCCGTTCCTCA 59.570 61.111 0.00 0.00 0.00 3.86
192 193 3.056328 GCTGTTGCCCCGTTCCTC 61.056 66.667 0.00 0.00 0.00 3.71
209 210 0.036199 CATTTGGGTGTGCCATTGGG 60.036 55.000 4.53 0.00 36.17 4.12
210 211 0.036199 CCATTTGGGTGTGCCATTGG 60.036 55.000 0.00 0.00 36.17 3.16
211 212 3.536548 CCATTTGGGTGTGCCATTG 57.463 52.632 0.00 0.00 36.17 2.82
218 219 6.328356 CTCACAGGAGTACCATTTGGGTGT 62.328 50.000 0.96 0.00 41.70 4.16
219 220 3.869912 CTCACAGGAGTACCATTTGGGTG 60.870 52.174 0.96 0.00 41.70 4.61
220 221 2.305927 CTCACAGGAGTACCATTTGGGT 59.694 50.000 0.96 0.00 42.20 4.51
221 222 2.356125 CCTCACAGGAGTACCATTTGGG 60.356 54.545 0.96 0.00 37.67 4.12
222 223 2.941415 GCCTCACAGGAGTACCATTTGG 60.941 54.545 0.00 0.00 37.67 3.28
223 224 2.290260 TGCCTCACAGGAGTACCATTTG 60.290 50.000 0.00 0.00 37.67 2.32
224 225 1.985159 TGCCTCACAGGAGTACCATTT 59.015 47.619 0.00 0.00 37.67 2.32
225 226 1.279271 GTGCCTCACAGGAGTACCATT 59.721 52.381 0.00 0.00 37.67 3.16
226 227 0.905357 GTGCCTCACAGGAGTACCAT 59.095 55.000 0.00 0.00 37.67 3.55
227 228 0.471022 TGTGCCTCACAGGAGTACCA 60.471 55.000 0.00 0.00 39.62 3.25
228 229 0.037232 GTGTGCCTCACAGGAGTACC 60.037 60.000 0.00 0.00 45.43 3.34
229 230 3.516578 GTGTGCCTCACAGGAGTAC 57.483 57.895 0.00 0.00 45.43 2.73
237 238 2.980233 GCAGGGTGTGTGCCTCAC 60.980 66.667 2.74 2.74 46.31 3.51
238 239 3.054189 TTGCAGGGTGTGTGCCTCA 62.054 57.895 0.00 0.00 40.43 3.86
239 240 2.203337 TTGCAGGGTGTGTGCCTC 60.203 61.111 0.00 0.00 40.43 4.70
240 241 2.519302 GTTGCAGGGTGTGTGCCT 60.519 61.111 0.00 0.00 40.43 4.75
241 242 1.954362 TTTGTTGCAGGGTGTGTGCC 61.954 55.000 0.00 0.00 40.43 5.01
242 243 0.528249 CTTTGTTGCAGGGTGTGTGC 60.528 55.000 0.00 0.00 41.59 4.57
243 244 1.102154 TCTTTGTTGCAGGGTGTGTG 58.898 50.000 0.00 0.00 0.00 3.82
244 245 1.956477 GATCTTTGTTGCAGGGTGTGT 59.044 47.619 0.00 0.00 0.00 3.72
245 246 2.227388 GAGATCTTTGTTGCAGGGTGTG 59.773 50.000 0.00 0.00 0.00 3.82
246 247 2.158623 TGAGATCTTTGTTGCAGGGTGT 60.159 45.455 0.00 0.00 0.00 4.16
247 248 2.507484 TGAGATCTTTGTTGCAGGGTG 58.493 47.619 0.00 0.00 0.00 4.61
248 249 2.957402 TGAGATCTTTGTTGCAGGGT 57.043 45.000 0.00 0.00 0.00 4.34
249 250 2.426024 CCATGAGATCTTTGTTGCAGGG 59.574 50.000 0.00 0.00 0.00 4.45
250 251 3.349927 TCCATGAGATCTTTGTTGCAGG 58.650 45.455 0.00 0.00 0.00 4.85
251 252 4.674623 GCTTCCATGAGATCTTTGTTGCAG 60.675 45.833 0.00 0.00 0.00 4.41
252 253 3.192001 GCTTCCATGAGATCTTTGTTGCA 59.808 43.478 0.00 0.00 0.00 4.08
253 254 3.192001 TGCTTCCATGAGATCTTTGTTGC 59.808 43.478 0.00 3.39 0.00 4.17
254 255 5.048224 ACTTGCTTCCATGAGATCTTTGTTG 60.048 40.000 0.00 0.00 0.00 3.33
255 256 5.075493 ACTTGCTTCCATGAGATCTTTGTT 58.925 37.500 0.00 0.00 0.00 2.83
256 257 4.660168 ACTTGCTTCCATGAGATCTTTGT 58.340 39.130 0.00 0.00 0.00 2.83
257 258 5.645067 TGTACTTGCTTCCATGAGATCTTTG 59.355 40.000 0.00 0.00 0.00 2.77
258 259 5.809001 TGTACTTGCTTCCATGAGATCTTT 58.191 37.500 0.00 0.00 0.00 2.52
259 260 5.426689 TGTACTTGCTTCCATGAGATCTT 57.573 39.130 0.00 0.00 0.00 2.40
260 261 5.627182 ATGTACTTGCTTCCATGAGATCT 57.373 39.130 0.00 0.00 0.00 2.75
261 262 5.008415 CCAATGTACTTGCTTCCATGAGATC 59.992 44.000 0.00 0.00 33.20 2.75
262 263 4.885907 CCAATGTACTTGCTTCCATGAGAT 59.114 41.667 0.00 0.00 33.20 2.75
263 264 4.263462 ACCAATGTACTTGCTTCCATGAGA 60.263 41.667 0.00 0.00 33.20 3.27
264 265 4.012374 ACCAATGTACTTGCTTCCATGAG 58.988 43.478 0.00 0.00 33.20 2.90
265 266 4.032960 ACCAATGTACTTGCTTCCATGA 57.967 40.909 0.00 0.00 33.20 3.07
266 267 4.201950 GCTACCAATGTACTTGCTTCCATG 60.202 45.833 0.00 0.00 33.20 3.66
267 268 3.947834 GCTACCAATGTACTTGCTTCCAT 59.052 43.478 0.00 0.00 33.20 3.41
268 269 3.343617 GCTACCAATGTACTTGCTTCCA 58.656 45.455 0.00 0.00 33.20 3.53
269 270 2.351726 CGCTACCAATGTACTTGCTTCC 59.648 50.000 0.00 0.00 33.20 3.46
270 271 3.259064 TCGCTACCAATGTACTTGCTTC 58.741 45.455 0.00 0.00 33.20 3.86
271 272 3.328382 TCGCTACCAATGTACTTGCTT 57.672 42.857 0.00 0.00 33.20 3.91
272 273 3.543680 ATCGCTACCAATGTACTTGCT 57.456 42.857 0.00 0.00 33.20 3.91
273 274 5.277345 CCTTAATCGCTACCAATGTACTTGC 60.277 44.000 0.00 0.00 33.20 4.01
274 275 5.815740 ACCTTAATCGCTACCAATGTACTTG 59.184 40.000 0.00 0.00 34.42 3.16
275 276 5.985911 ACCTTAATCGCTACCAATGTACTT 58.014 37.500 0.00 0.00 0.00 2.24
276 277 5.609533 ACCTTAATCGCTACCAATGTACT 57.390 39.130 0.00 0.00 0.00 2.73
277 278 6.073927 GCTAACCTTAATCGCTACCAATGTAC 60.074 42.308 0.00 0.00 0.00 2.90
278 279 5.987347 GCTAACCTTAATCGCTACCAATGTA 59.013 40.000 0.00 0.00 0.00 2.29
279 280 4.814771 GCTAACCTTAATCGCTACCAATGT 59.185 41.667 0.00 0.00 0.00 2.71
280 281 4.213482 GGCTAACCTTAATCGCTACCAATG 59.787 45.833 0.00 0.00 0.00 2.82
281 282 4.386711 GGCTAACCTTAATCGCTACCAAT 58.613 43.478 0.00 0.00 0.00 3.16
282 283 3.738899 CGGCTAACCTTAATCGCTACCAA 60.739 47.826 0.00 0.00 0.00 3.67
283 284 2.223876 CGGCTAACCTTAATCGCTACCA 60.224 50.000 0.00 0.00 0.00 3.25
284 285 2.401351 CGGCTAACCTTAATCGCTACC 58.599 52.381 0.00 0.00 0.00 3.18
285 286 2.401351 CCGGCTAACCTTAATCGCTAC 58.599 52.381 0.00 0.00 0.00 3.58
286 287 1.269936 GCCGGCTAACCTTAATCGCTA 60.270 52.381 22.15 0.00 0.00 4.26
287 288 0.532196 GCCGGCTAACCTTAATCGCT 60.532 55.000 22.15 0.00 0.00 4.93
288 289 0.532196 AGCCGGCTAACCTTAATCGC 60.532 55.000 31.86 0.00 0.00 4.58
289 290 2.223876 TGTAGCCGGCTAACCTTAATCG 60.224 50.000 36.82 0.00 0.00 3.34
290 291 3.129109 GTGTAGCCGGCTAACCTTAATC 58.871 50.000 36.82 21.71 0.00 1.75
291 292 2.502538 TGTGTAGCCGGCTAACCTTAAT 59.497 45.455 36.82 11.28 0.00 1.40
292 293 1.901159 TGTGTAGCCGGCTAACCTTAA 59.099 47.619 36.82 13.86 0.00 1.85
293 294 1.559368 TGTGTAGCCGGCTAACCTTA 58.441 50.000 36.82 14.71 0.00 2.69
294 295 0.688487 TTGTGTAGCCGGCTAACCTT 59.312 50.000 36.82 13.77 0.00 3.50
295 296 0.249398 CTTGTGTAGCCGGCTAACCT 59.751 55.000 36.82 14.61 0.00 3.50
296 297 1.366854 GCTTGTGTAGCCGGCTAACC 61.367 60.000 36.82 27.89 44.48 2.85
297 298 2.087344 GCTTGTGTAGCCGGCTAAC 58.913 57.895 36.82 31.21 44.48 2.34
298 299 4.609995 GCTTGTGTAGCCGGCTAA 57.390 55.556 36.82 22.53 44.48 3.09
306 307 3.209410 GGATTGATCTGGGCTTGTGTAG 58.791 50.000 0.00 0.00 0.00 2.74
307 308 2.092429 GGGATTGATCTGGGCTTGTGTA 60.092 50.000 0.00 0.00 0.00 2.90
308 309 1.341383 GGGATTGATCTGGGCTTGTGT 60.341 52.381 0.00 0.00 0.00 3.72
309 310 1.341285 TGGGATTGATCTGGGCTTGTG 60.341 52.381 0.00 0.00 0.00 3.33
310 311 1.002069 TGGGATTGATCTGGGCTTGT 58.998 50.000 0.00 0.00 0.00 3.16
311 312 2.236766 GATGGGATTGATCTGGGCTTG 58.763 52.381 0.00 0.00 0.00 4.01
312 313 1.146566 GGATGGGATTGATCTGGGCTT 59.853 52.381 0.00 0.00 0.00 4.35
313 314 0.776176 GGATGGGATTGATCTGGGCT 59.224 55.000 0.00 0.00 0.00 5.19
314 315 0.479815 TGGATGGGATTGATCTGGGC 59.520 55.000 0.00 0.00 0.00 5.36
315 316 2.377531 TGATGGATGGGATTGATCTGGG 59.622 50.000 0.00 0.00 0.00 4.45
316 317 3.801307 TGATGGATGGGATTGATCTGG 57.199 47.619 0.00 0.00 0.00 3.86
317 318 7.956328 AATTATGATGGATGGGATTGATCTG 57.044 36.000 0.00 0.00 0.00 2.90
318 319 8.967779 AAAATTATGATGGATGGGATTGATCT 57.032 30.769 0.00 0.00 0.00 2.75
321 322 9.825706 TGATAAAATTATGATGGATGGGATTGA 57.174 29.630 0.00 0.00 0.00 2.57
324 325 9.604569 TGTTGATAAAATTATGATGGATGGGAT 57.395 29.630 0.00 0.00 0.00 3.85
325 326 9.431690 TTGTTGATAAAATTATGATGGATGGGA 57.568 29.630 0.00 0.00 0.00 4.37
326 327 9.701098 CTTGTTGATAAAATTATGATGGATGGG 57.299 33.333 0.00 0.00 0.00 4.00
330 331 8.344831 CGCTCTTGTTGATAAAATTATGATGGA 58.655 33.333 0.00 0.00 0.00 3.41
331 332 8.131100 ACGCTCTTGTTGATAAAATTATGATGG 58.869 33.333 0.00 0.00 0.00 3.51
332 333 9.507280 AACGCTCTTGTTGATAAAATTATGATG 57.493 29.630 0.00 0.00 0.00 3.07
335 336 9.438291 CCTAACGCTCTTGTTGATAAAATTATG 57.562 33.333 0.00 0.00 33.32 1.90
336 337 8.129211 GCCTAACGCTCTTGTTGATAAAATTAT 58.871 33.333 0.00 0.00 33.32 1.28
337 338 7.469260 GCCTAACGCTCTTGTTGATAAAATTA 58.531 34.615 0.00 0.00 33.32 1.40
338 339 6.322491 GCCTAACGCTCTTGTTGATAAAATT 58.678 36.000 0.00 0.00 33.32 1.82
339 340 5.880341 GCCTAACGCTCTTGTTGATAAAAT 58.120 37.500 0.00 0.00 33.32 1.82
340 341 5.291293 GCCTAACGCTCTTGTTGATAAAA 57.709 39.130 0.00 0.00 33.32 1.52
341 342 4.939509 GCCTAACGCTCTTGTTGATAAA 57.060 40.909 0.00 0.00 33.32 1.40
354 355 2.864343 CACACCATACTAAGCCTAACGC 59.136 50.000 0.00 0.00 37.98 4.84
355 356 4.119442 ACACACCATACTAAGCCTAACG 57.881 45.455 0.00 0.00 0.00 3.18
356 357 6.875195 TGTTTACACACCATACTAAGCCTAAC 59.125 38.462 0.00 0.00 0.00 2.34
357 358 7.006865 TGTTTACACACCATACTAAGCCTAA 57.993 36.000 0.00 0.00 0.00 2.69
358 359 6.608539 TGTTTACACACCATACTAAGCCTA 57.391 37.500 0.00 0.00 0.00 3.93
359 360 5.492855 TGTTTACACACCATACTAAGCCT 57.507 39.130 0.00 0.00 0.00 4.58
360 361 5.123344 CCTTGTTTACACACCATACTAAGCC 59.877 44.000 0.00 0.00 30.32 4.35
361 362 5.391629 GCCTTGTTTACACACCATACTAAGC 60.392 44.000 0.00 0.00 30.32 3.09
362 363 5.703592 TGCCTTGTTTACACACCATACTAAG 59.296 40.000 0.00 0.00 30.32 2.18
363 364 5.622180 TGCCTTGTTTACACACCATACTAA 58.378 37.500 0.00 0.00 30.32 2.24
364 365 5.230323 TGCCTTGTTTACACACCATACTA 57.770 39.130 0.00 0.00 30.32 1.82
365 366 4.072131 CTGCCTTGTTTACACACCATACT 58.928 43.478 0.00 0.00 30.32 2.12
366 367 3.190535 CCTGCCTTGTTTACACACCATAC 59.809 47.826 0.00 0.00 30.32 2.39
367 368 3.073209 TCCTGCCTTGTTTACACACCATA 59.927 43.478 0.00 0.00 30.32 2.74
368 369 2.158534 TCCTGCCTTGTTTACACACCAT 60.159 45.455 0.00 0.00 30.32 3.55
369 370 1.213182 TCCTGCCTTGTTTACACACCA 59.787 47.619 0.00 0.00 30.32 4.17
370 371 1.975660 TCCTGCCTTGTTTACACACC 58.024 50.000 0.00 0.00 30.32 4.16
371 372 4.359706 CTTTTCCTGCCTTGTTTACACAC 58.640 43.478 0.00 0.00 30.32 3.82
372 373 3.383185 CCTTTTCCTGCCTTGTTTACACA 59.617 43.478 0.00 0.00 0.00 3.72
373 374 3.798889 GCCTTTTCCTGCCTTGTTTACAC 60.799 47.826 0.00 0.00 0.00 2.90
374 375 2.364002 GCCTTTTCCTGCCTTGTTTACA 59.636 45.455 0.00 0.00 0.00 2.41
375 376 2.364002 TGCCTTTTCCTGCCTTGTTTAC 59.636 45.455 0.00 0.00 0.00 2.01
376 377 2.627699 CTGCCTTTTCCTGCCTTGTTTA 59.372 45.455 0.00 0.00 0.00 2.01
377 378 1.413812 CTGCCTTTTCCTGCCTTGTTT 59.586 47.619 0.00 0.00 0.00 2.83
378 379 1.043022 CTGCCTTTTCCTGCCTTGTT 58.957 50.000 0.00 0.00 0.00 2.83
379 380 0.106015 ACTGCCTTTTCCTGCCTTGT 60.106 50.000 0.00 0.00 0.00 3.16
380 381 0.316204 CACTGCCTTTTCCTGCCTTG 59.684 55.000 0.00 0.00 0.00 3.61
381 382 0.829182 CCACTGCCTTTTCCTGCCTT 60.829 55.000 0.00 0.00 0.00 4.35
382 383 1.228675 CCACTGCCTTTTCCTGCCT 60.229 57.895 0.00 0.00 0.00 4.75
383 384 1.228552 TCCACTGCCTTTTCCTGCC 60.229 57.895 0.00 0.00 0.00 4.85
384 385 0.823356 TGTCCACTGCCTTTTCCTGC 60.823 55.000 0.00 0.00 0.00 4.85
385 386 1.242076 CTGTCCACTGCCTTTTCCTG 58.758 55.000 0.00 0.00 0.00 3.86
386 387 0.846693 ACTGTCCACTGCCTTTTCCT 59.153 50.000 0.00 0.00 0.00 3.36
387 388 0.954452 CACTGTCCACTGCCTTTTCC 59.046 55.000 0.00 0.00 0.00 3.13
388 389 0.954452 CCACTGTCCACTGCCTTTTC 59.046 55.000 0.00 0.00 0.00 2.29
389 390 0.258774 ACCACTGTCCACTGCCTTTT 59.741 50.000 0.00 0.00 0.00 2.27
390 391 0.258774 AACCACTGTCCACTGCCTTT 59.741 50.000 0.00 0.00 0.00 3.11
391 392 0.179018 GAACCACTGTCCACTGCCTT 60.179 55.000 0.00 0.00 0.00 4.35
392 393 1.056700 AGAACCACTGTCCACTGCCT 61.057 55.000 0.00 0.00 0.00 4.75
393 394 0.886490 CAGAACCACTGTCCACTGCC 60.886 60.000 0.00 0.00 41.30 4.85
394 395 0.886490 CCAGAACCACTGTCCACTGC 60.886 60.000 0.00 0.00 44.40 4.40
395 396 0.886490 GCCAGAACCACTGTCCACTG 60.886 60.000 0.00 0.00 44.40 3.66
396 397 1.451936 GCCAGAACCACTGTCCACT 59.548 57.895 0.00 0.00 44.40 4.00
397 398 1.961277 CGCCAGAACCACTGTCCAC 60.961 63.158 0.00 0.00 44.40 4.02
398 399 2.137528 TCGCCAGAACCACTGTCCA 61.138 57.895 0.00 0.00 44.40 4.02
399 400 1.668151 GTCGCCAGAACCACTGTCC 60.668 63.158 0.00 0.00 44.40 4.02
400 401 0.531974 TTGTCGCCAGAACCACTGTC 60.532 55.000 0.00 0.00 44.40 3.51
401 402 0.814010 GTTGTCGCCAGAACCACTGT 60.814 55.000 0.00 0.00 44.40 3.55
402 403 1.507141 GGTTGTCGCCAGAACCACTG 61.507 60.000 5.47 0.00 45.36 3.66
403 404 1.227853 GGTTGTCGCCAGAACCACT 60.228 57.895 5.47 0.00 41.24 4.00
404 405 1.525077 TGGTTGTCGCCAGAACCAC 60.525 57.895 9.05 0.00 45.37 4.16
406 407 1.652563 GTTGGTTGTCGCCAGAACC 59.347 57.895 3.26 3.26 41.85 3.62
407 408 1.155424 TCGTTGGTTGTCGCCAGAAC 61.155 55.000 0.00 0.00 40.01 3.01
408 409 0.250124 ATCGTTGGTTGTCGCCAGAA 60.250 50.000 0.00 0.00 40.01 3.02
409 410 0.669318 GATCGTTGGTTGTCGCCAGA 60.669 55.000 0.00 0.00 40.01 3.86
410 411 0.670546 AGATCGTTGGTTGTCGCCAG 60.671 55.000 0.00 0.00 40.01 4.85
411 412 0.604073 TAGATCGTTGGTTGTCGCCA 59.396 50.000 0.00 0.00 36.62 5.69
412 413 1.278238 CTAGATCGTTGGTTGTCGCC 58.722 55.000 0.00 0.00 0.00 5.54
413 414 0.645868 GCTAGATCGTTGGTTGTCGC 59.354 55.000 0.00 0.00 0.00 5.19
414 415 1.278238 GGCTAGATCGTTGGTTGTCG 58.722 55.000 0.00 0.00 0.00 4.35
415 416 2.094182 TCTGGCTAGATCGTTGGTTGTC 60.094 50.000 0.00 0.00 0.00 3.18
416 417 1.899814 TCTGGCTAGATCGTTGGTTGT 59.100 47.619 0.00 0.00 0.00 3.32
417 418 2.672961 TCTGGCTAGATCGTTGGTTG 57.327 50.000 0.00 0.00 0.00 3.77
418 419 3.695830 TTTCTGGCTAGATCGTTGGTT 57.304 42.857 0.00 0.00 31.81 3.67
419 420 3.695830 TTTTCTGGCTAGATCGTTGGT 57.304 42.857 0.00 0.00 31.81 3.67
420 421 3.375299 CCTTTTTCTGGCTAGATCGTTGG 59.625 47.826 0.00 0.00 31.81 3.77
421 422 4.003648 ACCTTTTTCTGGCTAGATCGTTG 58.996 43.478 0.00 0.00 31.81 4.10
422 423 4.287766 ACCTTTTTCTGGCTAGATCGTT 57.712 40.909 0.00 0.00 31.81 3.85
423 424 3.983044 ACCTTTTTCTGGCTAGATCGT 57.017 42.857 0.00 0.00 31.81 3.73
424 425 4.253685 TCAACCTTTTTCTGGCTAGATCG 58.746 43.478 0.00 0.00 31.81 3.69
425 426 4.637977 CCTCAACCTTTTTCTGGCTAGATC 59.362 45.833 0.00 0.00 31.81 2.75
426 427 4.289672 TCCTCAACCTTTTTCTGGCTAGAT 59.710 41.667 0.00 0.00 31.81 1.98
427 428 3.650942 TCCTCAACCTTTTTCTGGCTAGA 59.349 43.478 0.00 0.00 0.00 2.43
428 429 4.021102 TCCTCAACCTTTTTCTGGCTAG 57.979 45.455 0.00 0.00 0.00 3.42
429 430 4.142038 GTTCCTCAACCTTTTTCTGGCTA 58.858 43.478 0.00 0.00 0.00 3.93
430 431 2.959030 GTTCCTCAACCTTTTTCTGGCT 59.041 45.455 0.00 0.00 0.00 4.75
431 432 3.371102 GTTCCTCAACCTTTTTCTGGC 57.629 47.619 0.00 0.00 0.00 4.85
442 443 1.463674 ATCGGCAATGGTTCCTCAAC 58.536 50.000 0.00 0.00 0.00 3.18
443 444 2.238646 ACTATCGGCAATGGTTCCTCAA 59.761 45.455 0.00 0.00 0.00 3.02
444 445 1.837439 ACTATCGGCAATGGTTCCTCA 59.163 47.619 0.00 0.00 0.00 3.86
445 446 2.622064 ACTATCGGCAATGGTTCCTC 57.378 50.000 0.00 0.00 0.00 3.71
446 447 3.433173 GGTTACTATCGGCAATGGTTCCT 60.433 47.826 0.00 0.00 30.71 3.36
447 448 2.876550 GGTTACTATCGGCAATGGTTCC 59.123 50.000 0.00 0.00 30.71 3.62
448 449 3.560068 CAGGTTACTATCGGCAATGGTTC 59.440 47.826 0.00 0.00 30.71 3.62
449 450 3.054655 ACAGGTTACTATCGGCAATGGTT 60.055 43.478 0.00 0.00 30.71 3.67
450 451 2.504175 ACAGGTTACTATCGGCAATGGT 59.496 45.455 0.00 0.00 33.10 3.55
451 452 2.872245 CACAGGTTACTATCGGCAATGG 59.128 50.000 0.00 0.00 0.00 3.16
452 453 3.792401 TCACAGGTTACTATCGGCAATG 58.208 45.455 0.00 0.00 0.00 2.82
453 454 4.481368 TTCACAGGTTACTATCGGCAAT 57.519 40.909 0.00 0.00 0.00 3.56
454 455 3.965379 TTCACAGGTTACTATCGGCAA 57.035 42.857 0.00 0.00 0.00 4.52
455 456 3.965379 TTTCACAGGTTACTATCGGCA 57.035 42.857 0.00 0.00 0.00 5.69
456 457 4.694339 AGATTTCACAGGTTACTATCGGC 58.306 43.478 0.00 0.00 0.00 5.54
457 458 6.150396 AGAGATTTCACAGGTTACTATCGG 57.850 41.667 0.00 0.00 0.00 4.18
458 459 5.910166 CGAGAGATTTCACAGGTTACTATCG 59.090 44.000 0.00 0.00 33.05 2.92
459 460 7.028926 TCGAGAGATTTCACAGGTTACTATC 57.971 40.000 0.00 0.00 33.31 2.08
460 461 7.406031 TTCGAGAGATTTCACAGGTTACTAT 57.594 36.000 0.00 0.00 41.60 2.12
461 462 6.829229 TTCGAGAGATTTCACAGGTTACTA 57.171 37.500 0.00 0.00 41.60 1.82
462 463 5.723672 TTCGAGAGATTTCACAGGTTACT 57.276 39.130 0.00 0.00 41.60 2.24
463 464 7.221067 CACTATTCGAGAGATTTCACAGGTTAC 59.779 40.741 3.62 0.00 41.60 2.50
464 465 7.093902 ACACTATTCGAGAGATTTCACAGGTTA 60.094 37.037 3.62 0.00 41.60 2.85
465 466 6.102663 CACTATTCGAGAGATTTCACAGGTT 58.897 40.000 3.62 0.00 41.60 3.50
466 467 5.186021 ACACTATTCGAGAGATTTCACAGGT 59.814 40.000 3.62 0.00 41.60 4.00
467 468 5.518128 CACACTATTCGAGAGATTTCACAGG 59.482 44.000 3.62 0.00 41.60 4.00
468 469 5.005203 GCACACTATTCGAGAGATTTCACAG 59.995 44.000 3.62 0.00 41.60 3.66
469 470 4.864806 GCACACTATTCGAGAGATTTCACA 59.135 41.667 3.62 0.00 41.60 3.58
470 471 4.864806 TGCACACTATTCGAGAGATTTCAC 59.135 41.667 3.62 0.00 41.60 3.18
471 472 5.072040 TGCACACTATTCGAGAGATTTCA 57.928 39.130 3.62 0.00 41.60 2.69
472 473 5.578727 ACTTGCACACTATTCGAGAGATTTC 59.421 40.000 3.62 0.00 41.60 2.17
473 474 5.349817 CACTTGCACACTATTCGAGAGATTT 59.650 40.000 3.62 0.00 41.60 2.17
474 475 4.867047 CACTTGCACACTATTCGAGAGATT 59.133 41.667 3.62 0.00 41.60 2.40
475 476 4.081972 ACACTTGCACACTATTCGAGAGAT 60.082 41.667 3.62 0.00 41.60 2.75
476 477 3.255888 ACACTTGCACACTATTCGAGAGA 59.744 43.478 3.62 0.00 39.20 3.10
477 478 3.579709 ACACTTGCACACTATTCGAGAG 58.420 45.455 0.00 0.00 0.00 3.20
478 479 3.660501 ACACTTGCACACTATTCGAGA 57.339 42.857 0.00 0.00 0.00 4.04
479 480 4.211164 TCAAACACTTGCACACTATTCGAG 59.789 41.667 0.00 0.00 32.14 4.04
480 481 4.123506 TCAAACACTTGCACACTATTCGA 58.876 39.130 0.00 0.00 32.14 3.71
481 482 4.466567 TCAAACACTTGCACACTATTCG 57.533 40.909 0.00 0.00 32.14 3.34
482 483 7.698836 ATTTTCAAACACTTGCACACTATTC 57.301 32.000 0.00 0.00 32.14 1.75
483 484 7.382218 GCTATTTTCAAACACTTGCACACTATT 59.618 33.333 0.00 0.00 32.14 1.73
484 485 6.863126 GCTATTTTCAAACACTTGCACACTAT 59.137 34.615 0.00 0.00 32.14 2.12
485 486 6.039270 AGCTATTTTCAAACACTTGCACACTA 59.961 34.615 0.00 0.00 32.14 2.74
486 487 5.043248 GCTATTTTCAAACACTTGCACACT 58.957 37.500 0.00 0.00 32.14 3.55
487 488 5.043248 AGCTATTTTCAAACACTTGCACAC 58.957 37.500 0.00 0.00 32.14 3.82
488 489 5.261209 AGCTATTTTCAAACACTTGCACA 57.739 34.783 0.00 0.00 32.14 4.57
489 490 6.588348 AAAGCTATTTTCAAACACTTGCAC 57.412 33.333 0.00 0.00 32.14 4.57
490 491 6.699642 GGTAAAGCTATTTTCAAACACTTGCA 59.300 34.615 0.00 0.00 32.14 4.08
491 492 6.699642 TGGTAAAGCTATTTTCAAACACTTGC 59.300 34.615 0.00 0.00 32.14 4.01
492 493 8.641499 TTGGTAAAGCTATTTTCAAACACTTG 57.359 30.769 0.00 0.00 0.00 3.16
493 494 7.926018 CCTTGGTAAAGCTATTTTCAAACACTT 59.074 33.333 0.00 0.00 31.51 3.16
494 495 7.286775 TCCTTGGTAAAGCTATTTTCAAACACT 59.713 33.333 0.00 0.00 31.51 3.55
495 496 7.430441 TCCTTGGTAAAGCTATTTTCAAACAC 58.570 34.615 0.00 0.00 31.51 3.32
496 497 7.589958 TCCTTGGTAAAGCTATTTTCAAACA 57.410 32.000 0.00 0.00 31.51 2.83
497 498 7.598869 CCTTCCTTGGTAAAGCTATTTTCAAAC 59.401 37.037 0.00 0.00 31.51 2.93
498 499 7.507616 TCCTTCCTTGGTAAAGCTATTTTCAAA 59.492 33.333 0.00 0.00 31.51 2.69
499 500 7.007723 TCCTTCCTTGGTAAAGCTATTTTCAA 58.992 34.615 0.00 0.00 31.51 2.69
500 501 6.548321 TCCTTCCTTGGTAAAGCTATTTTCA 58.452 36.000 0.00 0.00 31.51 2.69
501 502 6.095580 CCTCCTTCCTTGGTAAAGCTATTTTC 59.904 42.308 0.00 0.00 31.51 2.29
502 503 5.952347 CCTCCTTCCTTGGTAAAGCTATTTT 59.048 40.000 0.00 0.00 31.51 1.82
503 504 5.510430 CCTCCTTCCTTGGTAAAGCTATTT 58.490 41.667 0.00 0.00 31.51 1.40
504 505 4.628959 GCCTCCTTCCTTGGTAAAGCTATT 60.629 45.833 0.00 0.00 31.51 1.73
505 506 3.117851 GCCTCCTTCCTTGGTAAAGCTAT 60.118 47.826 0.00 0.00 31.51 2.97
506 507 2.238898 GCCTCCTTCCTTGGTAAAGCTA 59.761 50.000 0.00 0.00 31.51 3.32
507 508 1.004862 GCCTCCTTCCTTGGTAAAGCT 59.995 52.381 0.00 0.00 31.51 3.74
508 509 1.464734 GCCTCCTTCCTTGGTAAAGC 58.535 55.000 0.00 0.00 31.51 3.51
509 510 1.003233 ACGCCTCCTTCCTTGGTAAAG 59.997 52.381 0.00 0.00 0.00 1.85
510 511 1.061546 ACGCCTCCTTCCTTGGTAAA 58.938 50.000 0.00 0.00 0.00 2.01
511 512 1.061546 AACGCCTCCTTCCTTGGTAA 58.938 50.000 0.00 0.00 0.00 2.85
512 513 1.061546 AAACGCCTCCTTCCTTGGTA 58.938 50.000 0.00 0.00 0.00 3.25
513 514 0.185175 AAAACGCCTCCTTCCTTGGT 59.815 50.000 0.00 0.00 0.00 3.67
514 515 1.328279 AAAAACGCCTCCTTCCTTGG 58.672 50.000 0.00 0.00 0.00 3.61
515 516 4.459337 AGATTAAAAACGCCTCCTTCCTTG 59.541 41.667 0.00 0.00 0.00 3.61
516 517 4.663334 AGATTAAAAACGCCTCCTTCCTT 58.337 39.130 0.00 0.00 0.00 3.36
517 518 4.302559 AGATTAAAAACGCCTCCTTCCT 57.697 40.909 0.00 0.00 0.00 3.36
518 519 4.217767 ACAAGATTAAAAACGCCTCCTTCC 59.782 41.667 0.00 0.00 0.00 3.46
519 520 5.372547 ACAAGATTAAAAACGCCTCCTTC 57.627 39.130 0.00 0.00 0.00 3.46
520 521 5.784578 AACAAGATTAAAAACGCCTCCTT 57.215 34.783 0.00 0.00 0.00 3.36
521 522 8.456471 GTTATAACAAGATTAAAAACGCCTCCT 58.544 33.333 10.81 0.00 0.00 3.69
522 523 8.456471 AGTTATAACAAGATTAAAAACGCCTCC 58.544 33.333 17.65 0.00 0.00 4.30
559 560 7.428472 GGACCAATTCGAATCGATTAAAGTTTC 59.572 37.037 11.38 6.78 35.23 2.78
563 564 6.358118 TGGACCAATTCGAATCGATTAAAG 57.642 37.500 11.38 6.05 35.23 1.85
567 568 4.513442 TCTTGGACCAATTCGAATCGATT 58.487 39.130 11.20 11.20 35.23 3.34
568 569 4.137116 TCTTGGACCAATTCGAATCGAT 57.863 40.909 11.83 0.00 35.23 3.59
571 572 9.586435 AATTATTTTCTTGGACCAATTCGAATC 57.414 29.630 11.83 0.00 0.00 2.52
601 602 5.063944 ACAAATACTAACGCAAGCAGATCTG 59.936 40.000 18.84 18.84 45.62 2.90
728 739 4.817936 GCGCAAATTGCCGGCCAT 62.818 61.111 26.77 17.16 41.12 4.40
752 782 3.518590 GGTATACTGACCGACAAAGTGG 58.481 50.000 2.25 0.00 0.00 4.00
759 789 3.733077 CGACAAAGGGTATACTGACCGAC 60.733 52.174 2.25 0.00 40.76 4.79
762 792 3.429960 GGACGACAAAGGGTATACTGACC 60.430 52.174 2.25 0.00 38.93 4.02
772 810 1.749634 ACGATCTAGGACGACAAAGGG 59.250 52.381 14.22 0.00 0.00 3.95
788 826 4.304110 AGTTGACATGTTGTACGAACGAT 58.696 39.130 0.00 0.00 0.00 3.73
792 830 4.025229 GCTGAAGTTGACATGTTGTACGAA 60.025 41.667 0.00 0.00 0.00 3.85
985 1063 2.006772 CCATTGCTCGCTACGTTCC 58.993 57.895 0.00 0.00 0.00 3.62
1238 3070 2.923035 CGTCCAGGTCCACCAGGT 60.923 66.667 7.05 0.00 42.71 4.00
1386 3218 1.134037 TGCATGCACTATGGCTGATCA 60.134 47.619 18.46 0.00 37.26 2.92
1419 3270 1.886542 CATGCATGCACTATGGCTGAT 59.113 47.619 25.37 0.00 37.26 2.90
1420 3271 1.314730 CATGCATGCACTATGGCTGA 58.685 50.000 25.37 0.00 37.26 4.26
1421 3272 3.865700 CATGCATGCACTATGGCTG 57.134 52.632 25.37 11.90 37.26 4.85
1441 3292 2.858344 GACCTGACACGTACATGCATAC 59.142 50.000 0.00 0.00 0.00 2.39
1442 3293 2.478879 CGACCTGACACGTACATGCATA 60.479 50.000 0.00 0.00 0.00 3.14
1443 3294 1.735700 CGACCTGACACGTACATGCAT 60.736 52.381 0.00 0.00 0.00 3.96
1501 3814 5.779771 AGTGCTTTTTATTGGAGGGAAATGA 59.220 36.000 0.00 0.00 0.00 2.57
1507 3820 5.888161 AGATACAGTGCTTTTTATTGGAGGG 59.112 40.000 0.00 0.00 0.00 4.30
1546 4749 1.392510 GAATAAACAGACCGTGACCGC 59.607 52.381 0.00 0.00 0.00 5.68
1603 6382 2.423898 GGGCTACAGTCAGGCGCTA 61.424 63.158 7.64 0.00 41.85 4.26
1614 6393 2.037367 AGACGCTCTGGGGCTACA 59.963 61.111 0.00 0.00 0.00 2.74
1919 6698 0.101579 GAGCTACCTCCAGAAGACGC 59.898 60.000 0.00 0.00 31.68 5.19
1920 6699 1.403679 CTGAGCTACCTCCAGAAGACG 59.596 57.143 0.00 0.00 37.29 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.