Multiple sequence alignment - TraesCS7D01G409500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G409500 chr7D 100.000 5739 0 0 1 5739 528086022 528080284 0.000000e+00 10599.0
1 TraesCS7D01G409500 chr7D 95.652 92 2 2 1 92 193222646 193222557 4.630000e-31 147.0
2 TraesCS7D01G409500 chr7A 94.983 2392 88 14 1032 3409 608364244 608361871 0.000000e+00 3723.0
3 TraesCS7D01G409500 chr7A 88.407 1846 141 31 3457 5265 608361886 608360077 0.000000e+00 2156.0
4 TraesCS7D01G409500 chr7A 96.546 579 15 1 2168 2741 574084607 574084029 0.000000e+00 953.0
5 TraesCS7D01G409500 chr7A 96.014 577 18 1 2168 2739 540870958 540870382 0.000000e+00 933.0
6 TraesCS7D01G409500 chr7A 95.292 531 19 4 5213 5739 608360080 608359552 0.000000e+00 837.0
7 TraesCS7D01G409500 chr7B 92.657 1389 80 9 3457 4839 565579959 565578587 0.000000e+00 1980.0
8 TraesCS7D01G409500 chr7B 92.657 1144 75 7 1032 2169 565582234 565581094 0.000000e+00 1639.0
9 TraesCS7D01G409500 chr7B 95.946 518 20 1 2892 3409 565580460 565579944 0.000000e+00 839.0
10 TraesCS7D01G409500 chr7B 87.968 507 32 11 5246 5739 565577948 565577458 6.450000e-159 571.0
11 TraesCS7D01G409500 chr7B 88.354 395 33 8 4855 5248 565578455 565578073 4.050000e-126 462.0
12 TraesCS7D01G409500 chr7B 86.667 135 2 1 2756 2890 565581089 565580971 1.000000e-27 135.0
13 TraesCS7D01G409500 chr7B 94.737 57 3 0 3400 3456 738358519 738358575 7.920000e-14 89.8
14 TraesCS7D01G409500 chr7B 94.643 56 3 0 3401 3456 741051800 741051855 2.850000e-13 87.9
15 TraesCS7D01G409500 chr7B 92.982 57 4 0 3400 3456 738661949 738662005 3.680000e-12 84.2
16 TraesCS7D01G409500 chr2D 96.996 932 25 3 78 1006 555579915 555578984 0.000000e+00 1563.0
17 TraesCS7D01G409500 chr2D 92.415 936 61 9 78 1005 174449841 174448908 0.000000e+00 1327.0
18 TraesCS7D01G409500 chr2D 94.974 577 29 0 2169 2745 625181637 625182213 0.000000e+00 905.0
19 TraesCS7D01G409500 chr2D 96.875 96 0 2 5124 5219 204499056 204498964 2.140000e-34 158.0
20 TraesCS7D01G409500 chr2D 95.745 94 2 2 1 93 44018171 44018263 3.580000e-32 150.0
21 TraesCS7D01G409500 chr2D 93.000 100 4 3 1 97 191123693 191123594 5.990000e-30 143.0
22 TraesCS7D01G409500 chr2D 94.643 56 1 2 3409 3462 81455871 81455816 1.020000e-12 86.1
23 TraesCS7D01G409500 chr3D 96.681 934 28 3 78 1009 285008927 285007995 0.000000e+00 1550.0
24 TraesCS7D01G409500 chr3D 94.444 504 25 2 2238 2741 370120971 370120471 0.000000e+00 773.0
25 TraesCS7D01G409500 chr3D 96.783 373 10 1 2378 2750 434026381 434026011 6.320000e-174 621.0
26 TraesCS7D01G409500 chr3D 96.226 212 8 0 2169 2380 434026674 434026463 1.180000e-91 348.0
27 TraesCS7D01G409500 chr6D 96.344 930 31 3 78 1005 389353655 389352727 0.000000e+00 1526.0
28 TraesCS7D01G409500 chr6D 93.814 97 4 2 1 96 23072277 23072372 1.670000e-30 145.0
29 TraesCS7D01G409500 chr1B 95.513 936 37 5 78 1010 33919624 33920557 0.000000e+00 1491.0
30 TraesCS7D01G409500 chr1B 92.119 939 65 7 78 1010 655841300 655840365 0.000000e+00 1315.0
31 TraesCS7D01G409500 chr5B 95.494 932 38 4 78 1006 612689680 612690610 0.000000e+00 1485.0
32 TraesCS7D01G409500 chr2B 95.494 932 38 4 78 1006 682844208 682843278 0.000000e+00 1485.0
33 TraesCS7D01G409500 chr2B 95.050 101 3 1 5120 5220 258656173 258656075 2.140000e-34 158.0
34 TraesCS7D01G409500 chr2B 84.884 86 10 3 3403 3487 539370650 539370733 3.680000e-12 84.2
35 TraesCS7D01G409500 chr1D 91.710 953 66 10 78 1020 457084942 457085891 0.000000e+00 1310.0
36 TraesCS7D01G409500 chr1D 93.939 99 4 2 5124 5222 267593032 267593128 1.290000e-31 148.0
37 TraesCS7D01G409500 chr1D 95.699 93 2 1 1 93 430004708 430004618 1.290000e-31 148.0
38 TraesCS7D01G409500 chr1D 94.643 56 2 1 3408 3462 416875047 416874992 1.020000e-12 86.1
39 TraesCS7D01G409500 chr3A 96.220 582 13 3 2168 2744 45583043 45582466 0.000000e+00 944.0
40 TraesCS7D01G409500 chr3A 95.712 583 20 2 2168 2745 197199786 197199204 0.000000e+00 933.0
41 TraesCS7D01G409500 chr3A 97.701 87 2 0 1 87 699369678 699369764 3.580000e-32 150.0
42 TraesCS7D01G409500 chr2A 95.502 578 20 2 2169 2741 494154496 494155072 0.000000e+00 918.0
43 TraesCS7D01G409500 chr2A 100.000 86 0 0 1 86 72154771 72154856 5.950000e-35 159.0
44 TraesCS7D01G409500 chr2A 95.699 93 2 1 5128 5220 278914286 278914376 1.290000e-31 148.0
45 TraesCS7D01G409500 chr2A 90.351 114 5 6 5124 5234 726302151 726302041 1.670000e-30 145.0
46 TraesCS7D01G409500 chr6B 93.939 99 5 1 5123 5220 157607056 157607154 1.290000e-31 148.0
47 TraesCS7D01G409500 chr5D 94.792 96 4 1 1 96 118482314 118482220 1.290000e-31 148.0
48 TraesCS7D01G409500 chr5D 91.803 61 4 1 3403 3462 517369151 517369211 3.680000e-12 84.2
49 TraesCS7D01G409500 chr1A 96.667 90 2 1 1 89 96568540 96568451 1.290000e-31 148.0
50 TraesCS7D01G409500 chr6A 90.654 107 8 2 5124 5228 99206768 99206874 2.160000e-29 141.0
51 TraesCS7D01G409500 chr6A 91.803 61 3 2 3404 3462 8674743 8674803 3.680000e-12 84.2
52 TraesCS7D01G409500 chr3B 96.296 54 1 1 3409 3461 16129711 16129764 2.850000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G409500 chr7D 528080284 528086022 5738 True 10599.000000 10599 100.000000 1 5739 1 chr7D.!!$R2 5738
1 TraesCS7D01G409500 chr7A 608359552 608364244 4692 True 2238.666667 3723 92.894000 1032 5739 3 chr7A.!!$R3 4707
2 TraesCS7D01G409500 chr7A 574084029 574084607 578 True 953.000000 953 96.546000 2168 2741 1 chr7A.!!$R2 573
3 TraesCS7D01G409500 chr7A 540870382 540870958 576 True 933.000000 933 96.014000 2168 2739 1 chr7A.!!$R1 571
4 TraesCS7D01G409500 chr7B 565577458 565582234 4776 True 937.666667 1980 90.708167 1032 5739 6 chr7B.!!$R1 4707
5 TraesCS7D01G409500 chr2D 555578984 555579915 931 True 1563.000000 1563 96.996000 78 1006 1 chr2D.!!$R5 928
6 TraesCS7D01G409500 chr2D 174448908 174449841 933 True 1327.000000 1327 92.415000 78 1005 1 chr2D.!!$R2 927
7 TraesCS7D01G409500 chr2D 625181637 625182213 576 False 905.000000 905 94.974000 2169 2745 1 chr2D.!!$F2 576
8 TraesCS7D01G409500 chr3D 285007995 285008927 932 True 1550.000000 1550 96.681000 78 1009 1 chr3D.!!$R1 931
9 TraesCS7D01G409500 chr3D 370120471 370120971 500 True 773.000000 773 94.444000 2238 2741 1 chr3D.!!$R2 503
10 TraesCS7D01G409500 chr3D 434026011 434026674 663 True 484.500000 621 96.504500 2169 2750 2 chr3D.!!$R3 581
11 TraesCS7D01G409500 chr6D 389352727 389353655 928 True 1526.000000 1526 96.344000 78 1005 1 chr6D.!!$R1 927
12 TraesCS7D01G409500 chr1B 33919624 33920557 933 False 1491.000000 1491 95.513000 78 1010 1 chr1B.!!$F1 932
13 TraesCS7D01G409500 chr1B 655840365 655841300 935 True 1315.000000 1315 92.119000 78 1010 1 chr1B.!!$R1 932
14 TraesCS7D01G409500 chr5B 612689680 612690610 930 False 1485.000000 1485 95.494000 78 1006 1 chr5B.!!$F1 928
15 TraesCS7D01G409500 chr2B 682843278 682844208 930 True 1485.000000 1485 95.494000 78 1006 1 chr2B.!!$R2 928
16 TraesCS7D01G409500 chr1D 457084942 457085891 949 False 1310.000000 1310 91.710000 78 1020 1 chr1D.!!$F2 942
17 TraesCS7D01G409500 chr3A 45582466 45583043 577 True 944.000000 944 96.220000 2168 2744 1 chr3A.!!$R1 576
18 TraesCS7D01G409500 chr3A 197199204 197199786 582 True 933.000000 933 95.712000 2168 2745 1 chr3A.!!$R2 577
19 TraesCS7D01G409500 chr2A 494154496 494155072 576 False 918.000000 918 95.502000 2169 2741 1 chr2A.!!$F3 572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
494 500 1.627864 AATCCTGTCCGGTTTTTGGG 58.372 50.0 0.00 0.00 0.00 4.12 F
1028 1037 0.906775 AGGTGGTACCCGTTACATGG 59.093 55.0 10.07 0.00 39.75 3.66 F
1378 1394 0.906775 GAATCCGTCCCTAACCACCA 59.093 55.0 0.00 0.00 0.00 4.17 F
1465 1481 1.015868 AGAGCTAGGAACGTACTCGC 58.984 55.0 8.16 8.16 41.18 5.03 F
3437 4061 0.550393 AGAAAAGGAGGAGGACCCCC 60.550 60.0 0.00 0.00 36.73 5.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1358 1374 0.906775 GGTGGTTAGGGACGGATTCA 59.093 55.000 0.00 0.00 0.00 2.57 R
1890 1907 1.539388 TGGAACCTTGCATGCTAAACG 59.461 47.619 20.33 4.23 0.00 3.60 R
2183 2203 2.363359 TGAGCTCTCACGTGATATGCAT 59.637 45.455 27.19 3.79 34.14 3.96 R
3441 4065 0.105593 ATGTACGCCCAGATGCAGAG 59.894 55.000 0.00 0.00 0.00 3.35 R
5318 6223 0.243907 CGAGAGGTAGGTGTGTGTGG 59.756 60.000 0.00 0.00 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.685276 ACAATAGACAATTATCATGAACAAGGA 57.315 29.630 0.00 0.00 0.00 3.36
63 64 7.839680 AACCATTTTATTATTGCCTCTAGGG 57.160 36.000 0.00 0.00 35.18 3.53
76 77 4.437682 CCTCTAGGGCATATTTCCAACA 57.562 45.455 0.00 0.00 0.00 3.33
255 257 3.854666 CAGTCTCTTGGTGTCGATGAAT 58.145 45.455 0.00 0.00 0.00 2.57
494 500 1.627864 AATCCTGTCCGGTTTTTGGG 58.372 50.000 0.00 0.00 0.00 4.12
789 796 3.118445 AGGAAGCTGGAGTTGCTATTCTC 60.118 47.826 0.00 0.00 40.22 2.87
1021 1030 3.793819 AAAAACATAGGTGGTACCCGT 57.206 42.857 10.07 5.18 39.75 5.28
1022 1031 3.793819 AAAACATAGGTGGTACCCGTT 57.206 42.857 10.07 0.52 39.75 4.44
1023 1032 4.906747 AAAACATAGGTGGTACCCGTTA 57.093 40.909 10.07 0.00 39.75 3.18
1024 1033 3.893326 AACATAGGTGGTACCCGTTAC 57.107 47.619 10.07 0.00 39.75 2.50
1025 1034 2.818921 ACATAGGTGGTACCCGTTACA 58.181 47.619 10.07 0.00 39.75 2.41
1026 1035 3.377573 ACATAGGTGGTACCCGTTACAT 58.622 45.455 10.07 0.50 39.75 2.29
1027 1036 3.133362 ACATAGGTGGTACCCGTTACATG 59.867 47.826 10.07 7.93 39.75 3.21
1028 1037 0.906775 AGGTGGTACCCGTTACATGG 59.093 55.000 10.07 0.00 39.75 3.66
1250 1265 1.068434 CCAGCGATTCTTCCTCTCCTC 59.932 57.143 0.00 0.00 0.00 3.71
1290 1305 3.324117 GAACCTTTCTTCCGGTGAGTAC 58.676 50.000 0.00 0.00 32.86 2.73
1343 1359 3.492756 CGTTCGCAATCCCAACAAATTTT 59.507 39.130 0.00 0.00 0.00 1.82
1358 1374 1.265454 ATTTTCCGTCTCTCCCCGCT 61.265 55.000 0.00 0.00 0.00 5.52
1371 1387 2.131709 CCCGCTGAATCCGTCCCTA 61.132 63.158 0.00 0.00 0.00 3.53
1376 1392 1.742750 GCTGAATCCGTCCCTAACCAC 60.743 57.143 0.00 0.00 0.00 4.16
1378 1394 0.906775 GAATCCGTCCCTAACCACCA 59.093 55.000 0.00 0.00 0.00 4.17
1388 1404 1.196012 CTAACCACCACTCCCTCTCC 58.804 60.000 0.00 0.00 0.00 3.71
1426 1442 4.051167 TCCTCCCTGACCGGCGTA 62.051 66.667 6.01 0.00 0.00 4.42
1458 1474 2.233922 TGGAAAGGAAGAGCTAGGAACG 59.766 50.000 0.00 0.00 0.00 3.95
1465 1481 1.015868 AGAGCTAGGAACGTACTCGC 58.984 55.000 8.16 8.16 41.18 5.03
1568 1584 3.273618 AGTGGTAAGATTCCTCCTCCTCT 59.726 47.826 0.00 0.00 0.00 3.69
1572 1588 3.328535 AAGATTCCTCCTCCTCTCTCC 57.671 52.381 0.00 0.00 0.00 3.71
1676 1692 3.884895 CCTGCTCACCACCATGTAATTA 58.115 45.455 0.00 0.00 0.00 1.40
1679 1695 4.513442 TGCTCACCACCATGTAATTAGAC 58.487 43.478 0.00 0.00 0.00 2.59
1687 1703 7.012327 CACCACCATGTAATTAGACGAATGAAT 59.988 37.037 0.00 0.00 0.00 2.57
1849 1866 5.584649 CCTTTCTTGTAATTGCCGATGACTA 59.415 40.000 0.00 0.00 0.00 2.59
1853 1870 8.725405 TTCTTGTAATTGCCGATGACTATTTA 57.275 30.769 0.00 0.00 0.00 1.40
1854 1871 8.725405 TCTTGTAATTGCCGATGACTATTTAA 57.275 30.769 0.00 0.00 0.00 1.52
1929 1946 5.608798 TCCAAAGGGGGAGATAAAAAGAA 57.391 39.130 0.00 0.00 37.22 2.52
2042 2062 1.134699 TCTGATCAAATTCGAGCGGCT 60.135 47.619 0.00 0.00 0.00 5.52
2057 2077 4.295051 GAGCGGCTAATAGAGAAAGAGTG 58.705 47.826 0.60 0.00 0.00 3.51
2063 2083 5.103000 GCTAATAGAGAAAGAGTGTGCGAA 58.897 41.667 0.00 0.00 0.00 4.70
2099 2119 3.450817 TGGAGATGCTCGAATTAGTTGGA 59.549 43.478 0.00 0.00 0.00 3.53
2221 2241 8.749354 TGAGAGCTCATATAGTCAAACTACAAA 58.251 33.333 17.77 0.00 31.98 2.83
2315 2335 2.352617 GCCGGCAAATGAAATTGTGAGA 60.353 45.455 24.80 0.00 36.10 3.27
2520 2634 3.888930 GGAGAGTCTGAGTATGGAAGAGG 59.111 52.174 0.00 0.00 0.00 3.69
2895 3518 2.415697 AAAGGAAAACCGTCATTGCG 57.584 45.000 0.00 0.00 0.00 4.85
3026 3649 3.744426 ACGTTGGGAATTAAACTGTCTCG 59.256 43.478 0.00 0.00 0.00 4.04
3255 3879 9.755804 TGTGTAGAACATTTGCATAATTTTTGA 57.244 25.926 0.00 0.00 32.36 2.69
3404 4028 6.867662 CAGGGTATCTGTTACATGGAATTC 57.132 41.667 0.00 0.00 38.64 2.17
3405 4029 6.595682 CAGGGTATCTGTTACATGGAATTCT 58.404 40.000 5.23 0.00 38.64 2.40
3406 4030 6.708054 CAGGGTATCTGTTACATGGAATTCTC 59.292 42.308 5.23 0.00 38.64 2.87
3407 4031 6.386927 AGGGTATCTGTTACATGGAATTCTCA 59.613 38.462 5.23 2.28 31.99 3.27
3408 4032 7.072961 AGGGTATCTGTTACATGGAATTCTCAT 59.927 37.037 5.23 4.63 31.99 2.90
3409 4033 7.721399 GGGTATCTGTTACATGGAATTCTCATT 59.279 37.037 5.23 2.39 31.99 2.57
3410 4034 9.125026 GGTATCTGTTACATGGAATTCTCATTT 57.875 33.333 5.23 3.56 31.99 2.32
3435 4059 4.652679 TTTTAGAAAAGGAGGAGGACCC 57.347 45.455 0.00 0.00 36.73 4.46
3436 4060 2.265526 TAGAAAAGGAGGAGGACCCC 57.734 55.000 0.00 0.00 36.73 4.95
3437 4061 0.550393 AGAAAAGGAGGAGGACCCCC 60.550 60.000 0.00 0.00 36.73 5.40
3438 4062 1.911702 GAAAAGGAGGAGGACCCCCG 61.912 65.000 0.00 0.00 37.58 5.73
3439 4063 3.945064 AAAGGAGGAGGACCCCCGG 62.945 68.421 0.00 0.00 37.58 5.73
3451 4075 4.559063 CCCCGGCCTCTGCATCTG 62.559 72.222 0.00 0.00 40.13 2.90
3452 4076 4.559063 CCCGGCCTCTGCATCTGG 62.559 72.222 0.00 0.00 40.13 3.86
3453 4077 4.559063 CCGGCCTCTGCATCTGGG 62.559 72.222 0.00 0.00 40.13 4.45
3456 4080 4.479993 GCCTCTGCATCTGGGCGT 62.480 66.667 0.00 0.00 37.47 5.68
3457 4081 3.094062 GCCTCTGCATCTGGGCGTA 62.094 63.158 0.00 0.00 37.47 4.42
3458 4082 1.227380 CCTCTGCATCTGGGCGTAC 60.227 63.158 0.00 0.00 36.28 3.67
3459 4083 1.517361 CTCTGCATCTGGGCGTACA 59.483 57.895 0.00 0.00 36.28 2.90
3460 4084 0.105593 CTCTGCATCTGGGCGTACAT 59.894 55.000 0.00 0.00 36.28 2.29
3461 4085 0.179076 TCTGCATCTGGGCGTACATG 60.179 55.000 0.00 0.00 36.28 3.21
3462 4086 1.153188 TGCATCTGGGCGTACATGG 60.153 57.895 0.00 0.00 36.28 3.66
3670 4294 5.709164 ACAGGAAAGATCTTCAAATGGTCTG 59.291 40.000 8.78 9.70 0.00 3.51
3721 4345 7.272144 AGAGTATTTGGAGGTGGTAGAATTT 57.728 36.000 0.00 0.00 0.00 1.82
3753 4377 2.425143 TTCCTTAGCATTGCCTCTGG 57.575 50.000 4.70 3.31 0.00 3.86
3956 4583 9.377312 GCATTTATTTTGCCCTAAGTTTTCATA 57.623 29.630 0.00 0.00 33.95 2.15
4014 4641 9.569122 TTATACAGGAGCTACTTGAAAAACTTT 57.431 29.630 0.00 0.00 0.00 2.66
4089 4716 4.322567 ACAATCAGCAGAGAGGAACTTTC 58.677 43.478 0.00 0.00 41.55 2.62
4132 4759 1.300971 CCAGCAACACACGAGGATGG 61.301 60.000 0.00 0.00 0.00 3.51
4143 4770 1.519455 GAGGATGGTCCGACAAGCG 60.519 63.158 0.00 0.00 42.75 4.68
4268 4895 1.650363 GGTGCGCGTAAAGTTTGGT 59.350 52.632 8.43 0.00 0.00 3.67
4373 5000 1.858372 GCGCCGGCTTGAAAAGGTAA 61.858 55.000 26.68 0.00 46.35 2.85
4381 5008 5.113383 CGGCTTGAAAAGGTAAAAGGTTTT 58.887 37.500 0.00 0.00 46.35 2.43
4407 5038 1.602311 CTGCTGCAGACTTCCAAACT 58.398 50.000 24.88 0.00 32.44 2.66
4415 5046 4.225942 TGCAGACTTCCAAACTATCCAGAT 59.774 41.667 0.00 0.00 0.00 2.90
4425 5056 5.469421 CCAAACTATCCAGATCATCTTCTGC 59.531 44.000 0.00 0.00 41.50 4.26
4437 5069 3.686241 TCATCTTCTGCGGTTTTCTGATG 59.314 43.478 0.00 0.00 33.51 3.07
4440 5072 1.603456 TCTGCGGTTTTCTGATGCAA 58.397 45.000 0.00 0.00 34.78 4.08
4444 5076 2.295629 TGCGGTTTTCTGATGCAATTGA 59.704 40.909 10.34 0.00 31.69 2.57
4447 5079 4.201647 GCGGTTTTCTGATGCAATTGAATG 60.202 41.667 10.34 0.00 0.00 2.67
4482 5114 0.396435 CTGCACTGGACAGGGTTGTA 59.604 55.000 3.22 0.00 37.76 2.41
4483 5115 0.107831 TGCACTGGACAGGGTTGTAC 59.892 55.000 3.22 0.00 37.76 2.90
4485 5117 1.621814 GCACTGGACAGGGTTGTACTA 59.378 52.381 3.22 0.00 39.05 1.82
4575 5207 1.225855 CACTAGCGGCTGTTCAACAA 58.774 50.000 13.86 0.00 0.00 2.83
4675 5309 4.207165 CCGGGAATTGAAGTTGGACATAT 58.793 43.478 0.00 0.00 0.00 1.78
4684 5318 5.928976 TGAAGTTGGACATATGGGATACTG 58.071 41.667 7.80 0.00 0.00 2.74
4689 5323 2.897969 GGACATATGGGATACTGGTCGT 59.102 50.000 7.80 0.00 0.00 4.34
4734 5368 9.632638 ATGTATTGGAATATAAAGCAAGTCTGT 57.367 29.630 0.00 0.00 0.00 3.41
4749 5383 6.319658 AGCAAGTCTGTTAAATACATCATGGG 59.680 38.462 0.00 0.00 35.85 4.00
4750 5384 6.498304 CAAGTCTGTTAAATACATCATGGGC 58.502 40.000 0.00 0.00 35.85 5.36
4751 5385 6.006275 AGTCTGTTAAATACATCATGGGCT 57.994 37.500 0.00 0.00 35.85 5.19
4752 5386 6.058183 AGTCTGTTAAATACATCATGGGCTC 58.942 40.000 0.00 0.00 35.85 4.70
4753 5387 5.822519 GTCTGTTAAATACATCATGGGCTCA 59.177 40.000 0.00 0.00 35.85 4.26
4754 5388 6.488006 GTCTGTTAAATACATCATGGGCTCAT 59.512 38.462 0.00 0.00 35.85 2.90
4755 5389 6.487668 TCTGTTAAATACATCATGGGCTCATG 59.512 38.462 21.16 21.16 40.99 3.07
4756 5390 6.294342 CTGTTAAATACATCATGGGCTCATGG 60.294 42.308 26.13 13.64 40.41 3.66
4766 5400 1.188863 GGGCTCATGGCAATGTTTCT 58.811 50.000 0.00 0.00 44.01 2.52
4773 5407 3.066621 TCATGGCAATGTTTCTTATCGGC 59.933 43.478 0.00 0.00 35.15 5.54
4877 5629 5.600226 AGCTATCAAGTGAGCTTGGACTGA 61.600 45.833 7.39 0.00 46.99 3.41
4893 5645 3.378427 GGACTGAAGAATTGTATGCACCC 59.622 47.826 0.00 0.00 0.00 4.61
4921 5673 4.202151 TGCTCGTATCTACTGTACGTCCTA 60.202 45.833 0.00 0.00 43.84 2.94
4943 5695 9.508642 TCCTACACATGTTTCACAAATAATGTA 57.491 29.630 0.00 0.00 41.46 2.29
4973 5735 3.214328 AGCTGTTTCACATCGAAAAGGT 58.786 40.909 0.00 0.00 45.11 3.50
4974 5736 3.251004 AGCTGTTTCACATCGAAAAGGTC 59.749 43.478 0.00 0.00 45.11 3.85
4989 5766 5.354234 CGAAAAGGTCCAGCAATATGTAACT 59.646 40.000 0.00 0.00 0.00 2.24
4993 5770 6.006275 AGGTCCAGCAATATGTAACTTGAT 57.994 37.500 0.00 0.00 0.00 2.57
5022 5799 6.127980 ACGGAATATAGATCACGATGTACCTG 60.128 42.308 0.00 0.00 0.00 4.00
5059 5836 0.679321 GCCCAGGAAGAAAGGAGCAG 60.679 60.000 0.00 0.00 0.00 4.24
5070 5847 1.889545 AAGGAGCAGCACTGAAGTTC 58.110 50.000 0.81 0.00 0.00 3.01
5075 5852 1.331756 AGCAGCACTGAAGTTCGTTTG 59.668 47.619 0.81 0.00 0.00 2.93
5078 5855 2.549754 CAGCACTGAAGTTCGTTTGGAT 59.450 45.455 0.00 0.00 0.00 3.41
5087 5864 2.304761 AGTTCGTTTGGATTGCCTCCTA 59.695 45.455 4.25 0.00 45.21 2.94
5103 5880 8.777865 TTGCCTCCTATGATTTCTATTTATCG 57.222 34.615 0.00 0.00 0.00 2.92
5104 5881 8.134202 TGCCTCCTATGATTTCTATTTATCGA 57.866 34.615 0.00 0.00 0.00 3.59
5105 5882 8.593679 TGCCTCCTATGATTTCTATTTATCGAA 58.406 33.333 0.00 0.00 0.00 3.71
5106 5883 9.092876 GCCTCCTATGATTTCTATTTATCGAAG 57.907 37.037 0.00 0.00 0.00 3.79
5280 6185 3.985279 CGATTTTGAGTAGTTCGTCCACA 59.015 43.478 0.00 0.00 0.00 4.17
5314 6219 9.329913 CTTTCTCTCCACATTTAAATTTACACG 57.670 33.333 0.00 0.00 0.00 4.49
5318 6223 5.462405 TCCACATTTAAATTTACACGCACC 58.538 37.500 0.00 0.00 0.00 5.01
5325 6230 0.948678 ATTTACACGCACCCACACAC 59.051 50.000 0.00 0.00 0.00 3.82
5380 6286 3.318886 ACATACACAACATCGCGTACAA 58.681 40.909 5.77 0.00 0.00 2.41
5396 6302 1.019278 ACAACACATCGATCACCGGC 61.019 55.000 0.00 0.00 39.14 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.685276 TCCTTGTTCATGATAATTGTCTATTGT 57.315 29.630 0.00 0.00 0.00 2.71
37 38 9.533831 CCCTAGAGGCAATAATAAAATGGTTAT 57.466 33.333 0.00 0.00 0.00 1.89
38 39 8.934023 CCCTAGAGGCAATAATAAAATGGTTA 57.066 34.615 0.00 0.00 0.00 2.85
39 40 7.839680 CCCTAGAGGCAATAATAAAATGGTT 57.160 36.000 0.00 0.00 0.00 3.67
55 56 4.137543 GTGTTGGAAATATGCCCTAGAGG 58.862 47.826 0.00 0.00 39.47 3.69
56 57 4.780815 TGTGTTGGAAATATGCCCTAGAG 58.219 43.478 0.00 0.00 0.00 2.43
57 58 4.780815 CTGTGTTGGAAATATGCCCTAGA 58.219 43.478 0.00 0.00 0.00 2.43
58 59 3.316308 GCTGTGTTGGAAATATGCCCTAG 59.684 47.826 0.00 0.00 0.00 3.02
59 60 3.287222 GCTGTGTTGGAAATATGCCCTA 58.713 45.455 0.00 0.00 0.00 3.53
60 61 2.102578 GCTGTGTTGGAAATATGCCCT 58.897 47.619 0.00 0.00 0.00 5.19
61 62 1.136891 GGCTGTGTTGGAAATATGCCC 59.863 52.381 0.00 0.00 34.93 5.36
62 63 1.824230 TGGCTGTGTTGGAAATATGCC 59.176 47.619 0.00 0.00 38.89 4.40
63 64 3.450578 CATGGCTGTGTTGGAAATATGC 58.549 45.455 0.00 0.00 0.00 3.14
64 65 3.181473 CCCATGGCTGTGTTGGAAATATG 60.181 47.826 6.09 0.00 31.94 1.78
65 66 3.033184 CCCATGGCTGTGTTGGAAATAT 58.967 45.455 6.09 0.00 31.94 1.28
66 67 2.455557 CCCATGGCTGTGTTGGAAATA 58.544 47.619 6.09 0.00 31.94 1.40
67 68 1.269012 CCCATGGCTGTGTTGGAAAT 58.731 50.000 6.09 0.00 31.94 2.17
68 69 0.831288 CCCCATGGCTGTGTTGGAAA 60.831 55.000 6.09 0.00 31.94 3.13
69 70 1.228831 CCCCATGGCTGTGTTGGAA 60.229 57.895 6.09 0.00 31.94 3.53
70 71 2.440147 CCCCATGGCTGTGTTGGA 59.560 61.111 6.09 0.00 31.94 3.53
71 72 2.681064 CCCCCATGGCTGTGTTGG 60.681 66.667 6.09 0.00 0.00 3.77
151 152 4.873129 CGCGATCCCTCACACGGG 62.873 72.222 0.00 0.00 46.13 5.28
194 196 1.920835 GCCCCTCCAACCTCACTCT 60.921 63.158 0.00 0.00 0.00 3.24
646 653 3.726557 TGATGCTCCCAACAGAGAAAT 57.273 42.857 0.00 0.00 35.82 2.17
932 941 5.873179 AAATTAGTACATGACACCAACCG 57.127 39.130 0.00 0.00 0.00 4.44
936 945 8.375506 AGAAGAGAAAATTAGTACATGACACCA 58.624 33.333 0.00 0.00 0.00 4.17
1017 1026 2.078392 GTGTACAACCCATGTAACGGG 58.922 52.381 0.00 0.00 45.81 5.28
1018 1027 2.739913 CTGTGTACAACCCATGTAACGG 59.260 50.000 0.00 0.00 45.81 4.44
1019 1028 3.655486 TCTGTGTACAACCCATGTAACG 58.345 45.455 0.00 0.00 45.81 3.18
1020 1029 4.000988 CCTCTGTGTACAACCCATGTAAC 58.999 47.826 0.00 0.00 45.81 2.50
1021 1030 3.558321 GCCTCTGTGTACAACCCATGTAA 60.558 47.826 0.00 0.00 45.81 2.41
1022 1031 2.027561 GCCTCTGTGTACAACCCATGTA 60.028 50.000 0.00 0.00 43.63 2.29
1023 1032 1.271379 GCCTCTGTGTACAACCCATGT 60.271 52.381 0.00 0.00 46.36 3.21
1024 1033 1.453155 GCCTCTGTGTACAACCCATG 58.547 55.000 0.00 0.00 0.00 3.66
1025 1034 0.328258 GGCCTCTGTGTACAACCCAT 59.672 55.000 0.00 0.00 0.00 4.00
1026 1035 1.758592 GGCCTCTGTGTACAACCCA 59.241 57.895 0.00 0.00 0.00 4.51
1027 1036 1.002502 GGGCCTCTGTGTACAACCC 60.003 63.158 0.84 0.00 0.00 4.11
1028 1037 0.328258 ATGGGCCTCTGTGTACAACC 59.672 55.000 4.53 0.00 0.00 3.77
1029 1038 1.739067 GATGGGCCTCTGTGTACAAC 58.261 55.000 4.53 0.00 0.00 3.32
1030 1039 0.249120 CGATGGGCCTCTGTGTACAA 59.751 55.000 4.53 0.00 0.00 2.41
1101 1116 0.827368 CTCCTGGGTAGAGTTGGAGC 59.173 60.000 0.00 0.00 37.98 4.70
1343 1359 2.856039 ATTCAGCGGGGAGAGACGGA 62.856 60.000 0.00 0.00 0.00 4.69
1358 1374 0.906775 GGTGGTTAGGGACGGATTCA 59.093 55.000 0.00 0.00 0.00 2.57
1371 1387 1.539124 GGGAGAGGGAGTGGTGGTT 60.539 63.158 0.00 0.00 0.00 3.67
1425 1441 2.604079 TTTCCACCCGCCGGAGTA 60.604 61.111 5.05 0.00 33.01 2.59
1426 1442 4.016706 CTTTCCACCCGCCGGAGT 62.017 66.667 5.05 0.00 33.01 3.85
1458 1474 2.799371 CCTCCACCTCGCGAGTAC 59.201 66.667 32.41 0.00 0.00 2.73
1507 1523 1.066587 CAGAGATCCGTTCCCTCGC 59.933 63.158 0.00 0.00 32.52 5.03
1710 1726 7.870509 TTGCATATCAGACTTTGCTTCTATT 57.129 32.000 0.00 0.00 36.10 1.73
1715 1732 6.154021 AGGAAATTGCATATCAGACTTTGCTT 59.846 34.615 0.00 0.00 36.10 3.91
1724 1741 6.755141 CCAAAGTGAAGGAAATTGCATATCAG 59.245 38.462 0.00 0.00 0.00 2.90
1849 1866 9.174166 GAATACACCATGGTCAACTACTTAAAT 57.826 33.333 16.53 0.00 0.00 1.40
1853 1870 6.121776 TGAATACACCATGGTCAACTACTT 57.878 37.500 16.53 1.75 0.00 2.24
1854 1871 5.755409 TGAATACACCATGGTCAACTACT 57.245 39.130 16.53 0.00 0.00 2.57
1887 1904 3.181510 GGAACCTTGCATGCTAAACGTAG 60.182 47.826 20.33 4.76 0.00 3.51
1890 1907 1.539388 TGGAACCTTGCATGCTAAACG 59.461 47.619 20.33 4.23 0.00 3.60
1929 1946 5.294552 GCAACAGAGTAAGTGAACAAGTTCT 59.705 40.000 13.49 0.00 40.14 3.01
2042 2062 6.510879 TCTTCGCACACTCTTTCTCTATTA 57.489 37.500 0.00 0.00 0.00 0.98
2057 2077 3.423571 CAAAAGCTCATCATCTTCGCAC 58.576 45.455 0.00 0.00 0.00 5.34
2063 2083 3.884091 GCATCTCCAAAAGCTCATCATCT 59.116 43.478 0.00 0.00 0.00 2.90
2099 2119 6.854496 TTAAGTGCTTGAACGAGTACAATT 57.146 33.333 11.58 2.86 35.08 2.32
2183 2203 2.363359 TGAGCTCTCACGTGATATGCAT 59.637 45.455 27.19 3.79 34.14 3.96
2190 2210 4.451900 TGACTATATGAGCTCTCACGTGA 58.548 43.478 18.88 18.88 43.11 4.35
2249 2269 8.904099 ACCTAGATAAAACAGGCACAATATAC 57.096 34.615 0.00 0.00 32.31 1.47
2520 2634 7.835634 AAGCACACTTCTACTTTATTCTAGC 57.164 36.000 0.00 0.00 0.00 3.42
2610 2724 7.487822 TCTCATTACTTCACTGGATTCTTCT 57.512 36.000 0.00 0.00 0.00 2.85
2957 3580 4.409247 ACAAGTGAGACAGTTTAGTTCCCT 59.591 41.667 0.00 0.00 0.00 4.20
3026 3649 6.213677 TCATACGACACATCTGGTAATAAGC 58.786 40.000 0.00 0.00 0.00 3.09
3220 3844 8.341892 TGCAAATGTTCTACACAATAATACCA 57.658 30.769 0.00 0.00 39.50 3.25
3413 4037 4.202641 GGGGTCCTCCTCCTTTTCTAAAAA 60.203 45.833 0.00 0.00 35.33 1.94
3414 4038 3.332783 GGGGTCCTCCTCCTTTTCTAAAA 59.667 47.826 0.00 0.00 35.33 1.52
3415 4039 2.917600 GGGGTCCTCCTCCTTTTCTAAA 59.082 50.000 0.00 0.00 35.33 1.85
3416 4040 2.558974 GGGGTCCTCCTCCTTTTCTAA 58.441 52.381 0.00 0.00 35.33 2.10
3417 4041 2.265526 GGGGTCCTCCTCCTTTTCTA 57.734 55.000 0.00 0.00 35.33 2.10
3418 4042 3.106441 GGGGTCCTCCTCCTTTTCT 57.894 57.895 0.00 0.00 35.33 2.52
3434 4058 4.559063 CAGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
3435 4059 4.559063 CCAGATGCAGAGGCCGGG 62.559 72.222 2.18 0.00 40.13 5.73
3436 4060 4.559063 CCCAGATGCAGAGGCCGG 62.559 72.222 0.00 0.00 40.13 6.13
3439 4063 3.094062 TACGCCCAGATGCAGAGGC 62.094 63.158 8.59 8.59 42.18 4.70
3440 4064 1.227380 GTACGCCCAGATGCAGAGG 60.227 63.158 0.00 0.00 0.00 3.69
3441 4065 0.105593 ATGTACGCCCAGATGCAGAG 59.894 55.000 0.00 0.00 0.00 3.35
3442 4066 0.179076 CATGTACGCCCAGATGCAGA 60.179 55.000 0.00 0.00 0.00 4.26
3443 4067 1.162181 CCATGTACGCCCAGATGCAG 61.162 60.000 0.00 0.00 0.00 4.41
3444 4068 1.153188 CCATGTACGCCCAGATGCA 60.153 57.895 0.00 0.00 0.00 3.96
3445 4069 0.463654 TTCCATGTACGCCCAGATGC 60.464 55.000 0.00 0.00 0.00 3.91
3446 4070 2.260844 ATTCCATGTACGCCCAGATG 57.739 50.000 0.00 0.00 0.00 2.90
3447 4071 2.439507 AGAATTCCATGTACGCCCAGAT 59.560 45.455 0.65 0.00 0.00 2.90
3448 4072 1.837439 AGAATTCCATGTACGCCCAGA 59.163 47.619 0.65 0.00 0.00 3.86
3449 4073 2.213499 GAGAATTCCATGTACGCCCAG 58.787 52.381 0.65 0.00 0.00 4.45
3450 4074 1.557371 TGAGAATTCCATGTACGCCCA 59.443 47.619 0.65 0.00 0.00 5.36
3451 4075 2.325583 TGAGAATTCCATGTACGCCC 57.674 50.000 0.65 0.00 0.00 6.13
3452 4076 3.885484 CATGAGAATTCCATGTACGCC 57.115 47.619 20.25 0.00 37.28 5.68
3458 4082 5.184479 ACCAAGAACACATGAGAATTCCATG 59.816 40.000 23.96 23.96 45.03 3.66
3459 4083 5.327732 ACCAAGAACACATGAGAATTCCAT 58.672 37.500 0.00 2.82 0.00 3.41
3460 4084 4.728772 ACCAAGAACACATGAGAATTCCA 58.271 39.130 0.00 0.28 0.00 3.53
3461 4085 5.712152 AACCAAGAACACATGAGAATTCC 57.288 39.130 0.00 0.00 0.00 3.01
3462 4086 8.352942 AGTAAAACCAAGAACACATGAGAATTC 58.647 33.333 0.00 0.00 0.00 2.17
3670 4294 6.968904 CAGTTGCCATAGTTGATGTAACAATC 59.031 38.462 0.00 0.00 41.88 2.67
3721 4345 8.836413 GCAATGCTAAGGAATGTAACTGTATAA 58.164 33.333 0.00 0.00 0.00 0.98
3753 4377 2.097825 AGATGGCATTTTCAGGCTCAC 58.902 47.619 0.00 0.00 0.00 3.51
3956 4583 9.762933 AAAGTAACAACTTAATGATGCAAACAT 57.237 25.926 0.00 0.00 39.98 2.71
3990 4617 9.740710 ATAAAGTTTTTCAAGTAGCTCCTGTAT 57.259 29.630 0.00 0.00 0.00 2.29
4014 4641 2.367486 TGCAGCTGCTTGTAATGCATA 58.633 42.857 36.61 11.53 46.44 3.14
4086 4713 0.882927 CCTTTGTCAGACGCGGGAAA 60.883 55.000 12.47 0.00 0.00 3.13
4089 4716 3.423154 GCCTTTGTCAGACGCGGG 61.423 66.667 12.47 0.00 0.00 6.13
4094 4721 0.668535 GTGTTGGGCCTTTGTCAGAC 59.331 55.000 4.53 0.00 0.00 3.51
4132 4759 3.712881 GTGTGGCGCTTGTCGGAC 61.713 66.667 7.64 0.00 38.94 4.79
4143 4770 3.294493 ATTGGGTGCACGTGTGGC 61.294 61.111 18.38 3.00 0.00 5.01
4172 4799 2.420022 CTCAATGGACTTTGGTAAGCCG 59.580 50.000 0.00 0.00 37.67 5.52
4268 4895 6.149308 CACTTGGTAGAACAATGTGCATTCTA 59.851 38.462 3.17 3.17 34.55 2.10
4337 4964 0.245539 CGCCTTTCCTCCGTAGAACA 59.754 55.000 0.00 0.00 0.00 3.18
4367 4994 7.393515 CAGCAGGTAGATAAAACCTTTTACCTT 59.606 37.037 0.00 0.00 45.26 3.50
4373 5000 4.662278 TGCAGCAGGTAGATAAAACCTTT 58.338 39.130 0.00 0.00 45.26 3.11
4381 5008 2.695666 GGAAGTCTGCAGCAGGTAGATA 59.304 50.000 22.62 0.00 40.51 1.98
4407 5038 3.234353 ACCGCAGAAGATGATCTGGATA 58.766 45.455 0.00 0.00 45.60 2.59
4415 5046 3.401033 TCAGAAAACCGCAGAAGATGA 57.599 42.857 0.00 0.00 0.00 2.92
4425 5056 4.925054 ACATTCAATTGCATCAGAAAACCG 59.075 37.500 0.00 0.00 0.00 4.44
4459 5091 0.773644 ACCCTGTCCAGTGCAGATTT 59.226 50.000 0.00 0.00 36.12 2.17
4482 5114 1.623811 AGGGACGAAGCATGTTGTAGT 59.376 47.619 0.00 0.00 0.00 2.73
4483 5115 2.002586 CAGGGACGAAGCATGTTGTAG 58.997 52.381 0.00 0.00 0.00 2.74
4485 5117 1.237285 GCAGGGACGAAGCATGTTGT 61.237 55.000 0.00 0.00 0.00 3.32
4749 5383 4.285292 CGATAAGAAACATTGCCATGAGC 58.715 43.478 4.52 0.00 44.14 4.26
4750 5384 4.790766 GCCGATAAGAAACATTGCCATGAG 60.791 45.833 4.52 0.00 34.11 2.90
4751 5385 3.066621 GCCGATAAGAAACATTGCCATGA 59.933 43.478 4.52 0.00 34.11 3.07
4752 5386 3.181488 TGCCGATAAGAAACATTGCCATG 60.181 43.478 0.00 0.00 36.34 3.66
4753 5387 3.023119 TGCCGATAAGAAACATTGCCAT 58.977 40.909 0.00 0.00 0.00 4.40
4754 5388 2.441410 TGCCGATAAGAAACATTGCCA 58.559 42.857 0.00 0.00 0.00 4.92
4755 5389 3.550842 GGATGCCGATAAGAAACATTGCC 60.551 47.826 0.00 0.00 0.00 4.52
4756 5390 3.550842 GGGATGCCGATAAGAAACATTGC 60.551 47.826 0.00 0.00 0.00 3.56
4766 5400 0.464735 CAAACCGGGGATGCCGATAA 60.465 55.000 6.32 0.00 0.00 1.75
4773 5407 4.705023 ACTAAAATTCTCAAACCGGGGATG 59.295 41.667 6.32 1.05 0.00 3.51
4877 5629 4.142093 GCAGAATGGGTGCATACAATTCTT 60.142 41.667 16.90 5.13 38.58 2.52
4893 5645 5.140872 CGTACAGTAGATACGAGCAGAATG 58.859 45.833 0.00 0.00 46.60 2.67
4943 5695 3.827008 TGTGAAACAGCTTCTCACTCT 57.173 42.857 16.53 0.00 45.67 3.24
4973 5735 7.438160 CGTAGAATCAAGTTACATATTGCTGGA 59.562 37.037 0.00 0.00 0.00 3.86
4974 5736 7.307396 CCGTAGAATCAAGTTACATATTGCTGG 60.307 40.741 0.00 0.00 0.00 4.85
4989 5766 8.331730 TCGTGATCTATATTCCGTAGAATCAA 57.668 34.615 0.00 0.00 41.91 2.57
4993 5770 7.683437 ACATCGTGATCTATATTCCGTAGAA 57.317 36.000 0.00 0.00 36.15 2.10
5022 5799 1.334869 GGCAATCGACAATGATCCACC 59.665 52.381 0.00 0.00 0.00 4.61
5059 5836 3.300009 CAATCCAAACGAACTTCAGTGC 58.700 45.455 0.00 0.00 0.00 4.40
5078 5855 8.593679 TCGATAAATAGAAATCATAGGAGGCAA 58.406 33.333 0.00 0.00 0.00 4.52
5087 5864 9.155975 CGATTCCCTTCGATAAATAGAAATCAT 57.844 33.333 0.00 0.00 41.62 2.45
5102 5879 2.596904 ACACATACCGATTCCCTTCG 57.403 50.000 0.00 0.00 38.83 3.79
5103 5880 3.869065 TGAACACATACCGATTCCCTTC 58.131 45.455 0.00 0.00 0.00 3.46
5104 5881 3.992943 TGAACACATACCGATTCCCTT 57.007 42.857 0.00 0.00 0.00 3.95
5105 5882 3.008594 TGTTGAACACATACCGATTCCCT 59.991 43.478 0.00 0.00 0.00 4.20
5106 5883 3.340034 TGTTGAACACATACCGATTCCC 58.660 45.455 0.00 0.00 0.00 3.97
5280 6185 1.070786 TGGAGAGAAAGCGCGGTTT 59.929 52.632 33.76 33.76 0.00 3.27
5314 6219 1.599797 GGTAGGTGTGTGTGGGTGC 60.600 63.158 0.00 0.00 0.00 5.01
5318 6223 0.243907 CGAGAGGTAGGTGTGTGTGG 59.756 60.000 0.00 0.00 0.00 4.17
5325 6230 1.134560 GGTAACTGCGAGAGGTAGGTG 59.865 57.143 0.00 0.00 31.84 4.00
5380 6286 2.186903 GGCCGGTGATCGATGTGT 59.813 61.111 0.54 0.00 42.43 3.72
5601 6519 1.511305 GAGAAGATCGTGGACGCCA 59.489 57.895 0.00 0.00 39.60 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.