Multiple sequence alignment - TraesCS7D01G408800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G408800 chr7D 100.000 4326 0 0 1 4326 526499187 526494862 0.000000e+00 7989.0
1 TraesCS7D01G408800 chr7D 98.753 3529 38 3 1 3524 526447138 526443611 0.000000e+00 6268.0
2 TraesCS7D01G408800 chr7D 96.696 2270 62 4 1270 3526 526528198 526525929 0.000000e+00 3764.0
3 TraesCS7D01G408800 chr7D 93.741 1358 78 5 1270 2625 527196811 527195459 0.000000e+00 2030.0
4 TraesCS7D01G408800 chr7D 93.407 1365 82 6 1270 2632 526804067 526802709 0.000000e+00 2015.0
5 TraesCS7D01G408800 chr7D 93.520 1358 81 5 1270 2625 526975490 526974138 0.000000e+00 2013.0
6 TraesCS7D01G408800 chr7D 94.952 733 32 4 544 1273 526380791 526380061 0.000000e+00 1144.0
7 TraesCS7D01G408800 chr7D 88.318 779 61 21 522 1273 526529039 526528264 0.000000e+00 907.0
8 TraesCS7D01G408800 chr7D 85.731 855 69 23 2737 3546 527195381 527194535 0.000000e+00 854.0
9 TraesCS7D01G408800 chr7D 87.668 746 52 14 2821 3532 526974001 526973262 0.000000e+00 832.0
10 TraesCS7D01G408800 chr7D 85.538 809 71 25 495 1273 526976348 526975556 0.000000e+00 804.0
11 TraesCS7D01G408800 chr7D 84.777 808 77 23 495 1273 527197667 527196877 0.000000e+00 769.0
12 TraesCS7D01G408800 chr7D 87.040 625 60 14 2737 3347 526802635 526802018 0.000000e+00 686.0
13 TraesCS7D01G408800 chr7D 92.092 392 11 5 3953 4324 526525483 526525092 6.370000e-148 534.0
14 TraesCS7D01G408800 chr7D 88.352 455 35 8 495 948 526804917 526804480 8.240000e-147 531.0
15 TraesCS7D01G408800 chr7D 94.462 325 8 2 3643 3958 526525839 526525516 3.890000e-135 492.0
16 TraesCS7D01G408800 chr7D 87.173 382 20 9 3953 4326 526442985 526442625 1.450000e-109 407.0
17 TraesCS7D01G408800 chr7D 87.462 327 27 7 950 1273 526804448 526804133 8.840000e-97 364.0
18 TraesCS7D01G408800 chr7D 88.760 258 8 3 259 496 526381389 526381133 3.270000e-76 296.0
19 TraesCS7D01G408800 chr7D 84.184 196 9 11 3371 3546 526800880 526800687 2.070000e-38 171.0
20 TraesCS7D01G408800 chr7D 81.863 204 30 5 3667 3866 526443332 526443132 9.620000e-37 165.0
21 TraesCS7D01G408800 chr7D 93.204 103 5 2 3561 3661 4902285 4902183 2.690000e-32 150.0
22 TraesCS7D01G408800 chr7D 92.708 96 7 0 3467 3562 526525932 526525837 5.830000e-29 139.0
23 TraesCS7D01G408800 chr7D 92.222 90 6 1 3474 3562 526443606 526443517 4.540000e-25 126.0
24 TraesCS7D01G408800 chr7D 91.139 79 4 3 3461 3537 527464931 527464854 2.130000e-18 104.0
25 TraesCS7D01G408800 chr7D 89.873 79 5 3 3461 3537 526973297 526973220 9.900000e-17 99.0
26 TraesCS7D01G408800 chr7D 86.364 88 3 1 3844 3922 51686000 51685913 2.140000e-13 87.9
27 TraesCS7D01G408800 chr7D 96.078 51 0 2 447 496 526529458 526529409 9.970000e-12 82.4
28 TraesCS7D01G408800 chr7D 88.235 51 4 2 2667 2716 562030291 562030340 4.670000e-05 60.2
29 TraesCS7D01G408800 chr7D 79.762 84 12 5 3847 3926 133687569 133687487 6.040000e-04 56.5
30 TraesCS7D01G408800 chr7A 95.982 2912 77 6 493 3390 606637922 606635037 0.000000e+00 4693.0
31 TraesCS7D01G408800 chr7A 92.585 1416 94 11 1270 2677 606940924 606939512 0.000000e+00 2023.0
32 TraesCS7D01G408800 chr7A 86.015 808 79 21 495 1273 606941792 606940990 0.000000e+00 835.0
33 TraesCS7D01G408800 chr7A 84.437 302 40 7 4019 4316 606634374 606634076 1.520000e-74 291.0
34 TraesCS7D01G408800 chr7A 90.698 215 11 4 3643 3848 606634758 606634544 1.180000e-70 278.0
35 TraesCS7D01G408800 chr7A 96.000 150 6 0 3377 3526 606634997 606634848 1.200000e-60 244.0
36 TraesCS7D01G408800 chr7A 88.742 151 6 4 259 398 606638509 606638359 1.600000e-39 174.0
37 TraesCS7D01G408800 chr7A 90.566 106 10 0 3956 4061 606580406 606580301 1.620000e-29 141.0
38 TraesCS7D01G408800 chr7A 97.500 80 1 1 3953 4031 606634481 606634402 7.550000e-28 135.0
39 TraesCS7D01G408800 chr7A 91.209 91 8 0 3467 3557 606634851 606634761 1.630000e-24 124.0
40 TraesCS7D01G408800 chr7A 97.826 46 0 1 451 496 606638338 606638294 1.290000e-10 78.7
41 TraesCS7D01G408800 chr7A 100.000 34 0 0 3846 3879 594413673 594413640 3.610000e-06 63.9
42 TraesCS7D01G408800 chr7A 87.273 55 5 2 1 53 606638615 606638561 1.300000e-05 62.1
43 TraesCS7D01G408800 chr7B 94.816 2334 76 12 1270 3562 563477439 563475110 0.000000e+00 3598.0
44 TraesCS7D01G408800 chr7B 95.754 2167 76 6 1376 3526 563660353 563658187 0.000000e+00 3478.0
45 TraesCS7D01G408800 chr7B 95.141 782 32 4 493 1273 563478281 563477505 0.000000e+00 1229.0
46 TraesCS7D01G408800 chr7B 96.330 654 17 3 627 1273 562995258 562994605 0.000000e+00 1068.0
47 TraesCS7D01G408800 chr7B 86.881 808 70 24 495 1273 563737356 563736556 0.000000e+00 872.0
48 TraesCS7D01G408800 chr7B 85.581 860 73 22 2728 3546 563735097 563734248 0.000000e+00 854.0
49 TraesCS7D01G408800 chr7B 90.123 324 24 4 950 1273 563666777 563666462 8.660000e-112 414.0
50 TraesCS7D01G408800 chr7B 93.981 216 10 1 3643 3858 563658091 563657879 1.500000e-84 324.0
51 TraesCS7D01G408800 chr7B 96.335 191 6 1 259 448 562995530 562995340 3.250000e-81 313.0
52 TraesCS7D01G408800 chr7B 89.113 248 12 5 250 496 563478839 563478606 1.180000e-75 294.0
53 TraesCS7D01G408800 chr7B 97.183 142 4 0 3643 3784 563475112 563474971 1.550000e-59 241.0
54 TraesCS7D01G408800 chr7B 92.025 163 13 0 4084 4246 677889233 677889395 3.360000e-56 230.0
55 TraesCS7D01G408800 chr7B 90.580 138 6 2 3953 4084 563657694 563657558 4.450000e-40 176.0
56 TraesCS7D01G408800 chr7B 97.260 73 2 0 4244 4316 563462310 563462238 1.630000e-24 124.0
57 TraesCS7D01G408800 chr7B 98.413 63 1 0 3955 4017 563462915 563462853 1.270000e-20 111.0
58 TraesCS7D01G408800 chr7B 96.923 65 2 0 4021 4085 563462373 563462309 4.570000e-20 110.0
59 TraesCS7D01G408800 chr7B 94.545 55 1 2 443 496 563672615 563672562 2.770000e-12 84.2
60 TraesCS7D01G408800 chr3D 92.121 165 13 0 4083 4247 500129017 500128853 2.600000e-57 233.0
61 TraesCS7D01G408800 chr3D 82.796 93 8 5 3838 3922 390200733 390200641 4.640000e-10 76.8
62 TraesCS7D01G408800 chr4B 91.975 162 13 0 4084 4245 344463459 344463298 1.210000e-55 228.0
63 TraesCS7D01G408800 chr4B 94.898 98 4 1 3549 3645 399119738 399119835 7.490000e-33 152.0
64 TraesCS7D01G408800 chr4B 95.122 41 2 0 3839 3879 256137150 256137190 1.000000e-06 65.8
65 TraesCS7D01G408800 chr4B 97.059 34 1 0 2679 2712 643651411 643651378 1.680000e-04 58.4
66 TraesCS7D01G408800 chrUn 89.595 173 17 1 4081 4252 141680743 141680915 7.280000e-53 219.0
67 TraesCS7D01G408800 chr4D 90.741 162 15 0 4079 4240 471702650 471702489 2.620000e-52 217.0
68 TraesCS7D01G408800 chr4D 100.000 90 0 0 3560 3649 508008872 508008783 2.680000e-37 167.0
69 TraesCS7D01G408800 chr4D 92.308 52 4 0 3846 3897 29863456 29863405 1.670000e-09 75.0
70 TraesCS7D01G408800 chr6B 89.412 170 17 1 4080 4248 583051196 583051365 3.390000e-51 213.0
71 TraesCS7D01G408800 chr2D 86.528 193 23 3 4061 4252 387193673 387193863 4.380000e-50 209.0
72 TraesCS7D01G408800 chr5A 95.833 96 4 0 3554 3649 496022118 496022213 5.790000e-34 156.0
73 TraesCS7D01G408800 chr2B 95.000 100 3 2 3547 3645 197683228 197683326 5.790000e-34 156.0
74 TraesCS7D01G408800 chr2B 95.000 100 3 2 3561 3660 201234264 201234361 5.790000e-34 156.0
75 TraesCS7D01G408800 chr3B 94.949 99 4 1 3549 3646 44751056 44750958 2.080000e-33 154.0
76 TraesCS7D01G408800 chr3A 93.333 105 5 2 3554 3658 726304016 726303914 2.080000e-33 154.0
77 TraesCS7D01G408800 chr3A 97.059 34 1 0 2679 2712 538834881 538834914 1.680000e-04 58.4
78 TraesCS7D01G408800 chr1D 80.976 205 28 9 4051 4247 494168430 494168631 7.490000e-33 152.0
79 TraesCS7D01G408800 chr1B 92.523 107 6 2 3543 3649 234252573 234252677 7.490000e-33 152.0
80 TraesCS7D01G408800 chr1B 82.955 88 6 7 3847 3925 40609519 40609432 2.160000e-08 71.3
81 TraesCS7D01G408800 chr4A 83.117 77 10 3 3846 3922 90090690 90090617 2.790000e-07 67.6
82 TraesCS7D01G408800 chr5D 93.182 44 1 2 3847 3890 563340954 563340913 3.610000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G408800 chr7D 526494862 526499187 4325 True 7989.000000 7989 100.000000 1 4326 1 chr7D.!!$R4 4325
1 TraesCS7D01G408800 chr7D 526442625 526447138 4513 True 1741.500000 6268 90.002750 1 4326 4 chr7D.!!$R7 4325
2 TraesCS7D01G408800 chr7D 527194535 527197667 3132 True 1217.666667 2030 88.083000 495 3546 3 chr7D.!!$R11 3051
3 TraesCS7D01G408800 chr7D 526525092 526529458 4366 True 986.400000 3764 93.392333 447 4324 6 chr7D.!!$R8 3877
4 TraesCS7D01G408800 chr7D 526973220 526976348 3128 True 937.000000 2013 89.149750 495 3537 4 chr7D.!!$R10 3042
5 TraesCS7D01G408800 chr7D 526800687 526804917 4230 True 753.400000 2015 88.089000 495 3546 5 chr7D.!!$R9 3051
6 TraesCS7D01G408800 chr7D 526380061 526381389 1328 True 720.000000 1144 91.856000 259 1273 2 chr7D.!!$R6 1014
7 TraesCS7D01G408800 chr7A 606939512 606941792 2280 True 1429.000000 2023 89.300000 495 2677 2 chr7A.!!$R4 2182
8 TraesCS7D01G408800 chr7A 606634076 606638615 4539 True 675.533333 4693 92.185222 1 4316 9 chr7A.!!$R3 4315
9 TraesCS7D01G408800 chr7B 563474971 563478839 3868 True 1340.500000 3598 94.063250 250 3784 4 chr7B.!!$R5 3534
10 TraesCS7D01G408800 chr7B 563657558 563660353 2795 True 1326.000000 3478 93.438333 1376 4084 3 chr7B.!!$R6 2708
11 TraesCS7D01G408800 chr7B 563734248 563737356 3108 True 863.000000 872 86.231000 495 3546 2 chr7B.!!$R7 3051
12 TraesCS7D01G408800 chr7B 562994605 562995530 925 True 690.500000 1068 96.332500 259 1273 2 chr7B.!!$R3 1014

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2677 3281 8.735303 TGTCGACATGGTTGTTTAAATAAATG 57.265 30.769 15.76 3.87 35.79 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
3800 5942 5.122239 ACGTCATGTTTGTATGTTCAGATGG 59.878 40.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2677 3281 8.735303 TGTCGACATGGTTGTTTAAATAAATG 57.265 30.769 15.76 3.87 35.79 2.32
2693 3297 1.978455 AATGCTCCCGCCGTTCCATA 61.978 55.000 0.00 0.00 34.43 2.74
3025 3656 1.156736 CAGTTGAATGGTGGTCGACC 58.843 55.000 28.17 28.17 46.37 4.79
3061 3692 3.640407 GACCTGCAGACCCTGGCA 61.640 66.667 17.39 0.00 38.52 4.92
3124 3755 2.362503 ATCGACCGGAGCCTGTCA 60.363 61.111 9.46 0.40 31.81 3.58
3466 5274 3.575256 TGGTACTGTCGTGGTCTGTTATT 59.425 43.478 0.00 0.00 0.00 1.40
3557 5519 7.809546 TTATTGGTGTGTGTCTGACATAAAA 57.190 32.000 14.37 5.00 36.78 1.52
3559 5521 4.133820 TGGTGTGTGTCTGACATAAAAGG 58.866 43.478 14.37 0.00 36.78 3.11
3560 5522 4.134563 GGTGTGTGTCTGACATAAAAGGT 58.865 43.478 14.37 0.00 36.78 3.50
3561 5523 5.163290 TGGTGTGTGTCTGACATAAAAGGTA 60.163 40.000 14.37 0.00 36.78 3.08
3562 5524 5.178809 GGTGTGTGTCTGACATAAAAGGTAC 59.821 44.000 14.37 5.34 36.78 3.34
3563 5525 5.989777 GTGTGTGTCTGACATAAAAGGTACT 59.010 40.000 14.37 0.00 37.25 2.73
3564 5526 6.145696 GTGTGTGTCTGACATAAAAGGTACTC 59.854 42.308 14.37 0.00 34.87 2.59
3565 5527 5.638234 GTGTGTCTGACATAAAAGGTACTCC 59.362 44.000 14.37 0.00 34.87 3.85
3566 5528 5.176592 GTGTCTGACATAAAAGGTACTCCC 58.823 45.833 14.37 0.00 38.49 4.30
3567 5529 9.361969 GTGTGTCTGACATAAAAGGTACTCCCT 62.362 44.444 14.37 0.00 40.72 4.20
3568 5530 5.187186 TGTCTGACATAAAAGGTACTCCCTC 59.813 44.000 6.36 0.00 45.47 4.30
3569 5531 5.422650 GTCTGACATAAAAGGTACTCCCTCT 59.577 44.000 2.24 0.00 45.47 3.69
3570 5532 5.422331 TCTGACATAAAAGGTACTCCCTCTG 59.578 44.000 0.00 0.00 45.47 3.35
3571 5533 5.091552 TGACATAAAAGGTACTCCCTCTGT 58.908 41.667 0.00 0.00 45.47 3.41
3572 5534 6.258354 TGACATAAAAGGTACTCCCTCTGTA 58.742 40.000 0.00 0.00 45.47 2.74
3573 5535 6.727231 TGACATAAAAGGTACTCCCTCTGTAA 59.273 38.462 0.00 0.00 45.47 2.41
3574 5536 7.236019 TGACATAAAAGGTACTCCCTCTGTAAA 59.764 37.037 0.00 0.00 45.47 2.01
3575 5537 7.392418 ACATAAAAGGTACTCCCTCTGTAAAC 58.608 38.462 0.00 0.00 45.47 2.01
3576 5538 7.237055 ACATAAAAGGTACTCCCTCTGTAAACT 59.763 37.037 0.00 0.00 45.47 2.66
3577 5539 8.755977 CATAAAAGGTACTCCCTCTGTAAACTA 58.244 37.037 0.00 0.00 45.47 2.24
3578 5540 7.622502 AAAAGGTACTCCCTCTGTAAACTAA 57.377 36.000 0.00 0.00 45.47 2.24
3579 5541 7.809880 AAAGGTACTCCCTCTGTAAACTAAT 57.190 36.000 0.00 0.00 45.47 1.73
3580 5542 8.906238 AAAGGTACTCCCTCTGTAAACTAATA 57.094 34.615 0.00 0.00 45.47 0.98
3581 5543 9.503369 AAAGGTACTCCCTCTGTAAACTAATAT 57.497 33.333 0.00 0.00 45.47 1.28
3587 5549 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
3588 5550 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
3589 5551 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
3590 5552 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
3591 5553 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
3608 5570 9.570488 AAGAGCGTTTAGATAACTAAAGTAGTG 57.430 33.333 5.51 0.00 45.42 2.74
3609 5571 8.954350 AGAGCGTTTAGATAACTAAAGTAGTGA 58.046 33.333 5.51 0.00 45.42 3.41
3610 5572 9.733219 GAGCGTTTAGATAACTAAAGTAGTGAT 57.267 33.333 5.51 0.00 45.42 3.06
3611 5573 9.733219 AGCGTTTAGATAACTAAAGTAGTGATC 57.267 33.333 5.51 5.03 45.42 2.92
3622 5584 9.978044 AACTAAAGTAGTGATCTAAACGTTCTT 57.022 29.630 0.00 0.00 39.39 2.52
3639 5601 8.862550 AACGTTCTTATATTAGTTTACGGAGG 57.137 34.615 0.00 0.00 32.54 4.30
3640 5602 7.428826 ACGTTCTTATATTAGTTTACGGAGGG 58.571 38.462 13.71 0.00 32.54 4.30
3641 5603 7.285401 ACGTTCTTATATTAGTTTACGGAGGGA 59.715 37.037 13.71 0.00 32.54 4.20
3765 5890 6.293955 CGATTTTTCTTGTTCACTGGGTACAT 60.294 38.462 0.00 0.00 0.00 2.29
3800 5942 2.292103 TTGTGAAAAGGTGCAGCAAC 57.708 45.000 19.63 0.57 0.00 4.17
3824 5966 5.122239 CCATCTGAACATACAAACATGACGT 59.878 40.000 0.00 0.00 0.00 4.34
3884 6200 8.231837 TCCATAATGTAAGACGTTTTTGTTAGC 58.768 33.333 0.00 0.00 0.00 3.09
4325 6735 1.948145 CAGGCATGCTCCTCTGAATTC 59.052 52.381 18.92 0.00 33.25 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
357 358 1.306654 AACCCTCTCGCCACCCATA 60.307 57.895 0.00 0.00 0.00 2.74
2003 2584 8.862325 ATCAGATTCCAGTTTATACAACACAA 57.138 30.769 0.00 0.00 0.00 3.33
2693 3297 6.811170 CCCATAATGCAAAAACGTCTTACATT 59.189 34.615 11.46 11.46 0.00 2.71
2840 3466 7.653713 CCTGTACAGTTTAAGCAGACCATATAG 59.346 40.741 21.18 0.00 0.00 1.31
3139 3770 1.934220 GCGTCATCTCGTCCCACTGA 61.934 60.000 0.00 0.00 0.00 3.41
3466 5274 4.751767 AATTCAGCAGGGTTTCAACAAA 57.248 36.364 0.00 0.00 0.00 2.83
3561 5523 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
3562 5524 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
3563 5525 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
3564 5526 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
3565 5527 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
3582 5544 9.570488 CACTACTTTAGTTATCTAAACGCTCTT 57.430 33.333 2.47 0.00 40.05 2.85
3583 5545 8.954350 TCACTACTTTAGTTATCTAAACGCTCT 58.046 33.333 2.47 0.00 40.05 4.09
3584 5546 9.733219 ATCACTACTTTAGTTATCTAAACGCTC 57.267 33.333 2.47 0.00 40.05 5.03
3585 5547 9.733219 GATCACTACTTTAGTTATCTAAACGCT 57.267 33.333 2.47 0.00 40.05 5.07
3586 5548 9.733219 AGATCACTACTTTAGTTATCTAAACGC 57.267 33.333 7.85 0.00 43.99 4.84
3596 5558 9.978044 AAGAACGTTTAGATCACTACTTTAGTT 57.022 29.630 0.46 0.00 36.76 2.24
3613 5575 9.305925 CCTCCGTAAACTAATATAAGAACGTTT 57.694 33.333 0.46 0.00 0.00 3.60
3614 5576 7.922811 CCCTCCGTAAACTAATATAAGAACGTT 59.077 37.037 0.00 0.00 0.00 3.99
3615 5577 7.285401 TCCCTCCGTAAACTAATATAAGAACGT 59.715 37.037 0.00 0.00 0.00 3.99
3616 5578 7.651808 TCCCTCCGTAAACTAATATAAGAACG 58.348 38.462 0.00 0.00 0.00 3.95
3617 5579 8.637099 ACTCCCTCCGTAAACTAATATAAGAAC 58.363 37.037 0.00 0.00 0.00 3.01
3618 5580 8.773033 ACTCCCTCCGTAAACTAATATAAGAA 57.227 34.615 0.00 0.00 0.00 2.52
3619 5581 9.512588 CTACTCCCTCCGTAAACTAATATAAGA 57.487 37.037 0.00 0.00 0.00 2.10
3620 5582 9.294614 ACTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
3625 5587 9.819754 AATATACTACTCCCTCCGTAAACTAAT 57.180 33.333 0.00 0.00 0.00 1.73
3626 5588 9.289782 GAATATACTACTCCCTCCGTAAACTAA 57.710 37.037 0.00 0.00 0.00 2.24
3627 5589 8.664079 AGAATATACTACTCCCTCCGTAAACTA 58.336 37.037 0.00 0.00 0.00 2.24
3628 5590 7.525165 AGAATATACTACTCCCTCCGTAAACT 58.475 38.462 0.00 0.00 0.00 2.66
3629 5591 7.757941 AGAATATACTACTCCCTCCGTAAAC 57.242 40.000 0.00 0.00 0.00 2.01
3630 5592 8.664079 AGTAGAATATACTACTCCCTCCGTAAA 58.336 37.037 0.00 0.00 46.61 2.01
3631 5593 8.099537 CAGTAGAATATACTACTCCCTCCGTAA 58.900 40.741 0.00 0.00 46.61 3.18
3632 5594 7.236432 ACAGTAGAATATACTACTCCCTCCGTA 59.764 40.741 0.00 0.00 46.61 4.02
3633 5595 6.044171 ACAGTAGAATATACTACTCCCTCCGT 59.956 42.308 0.00 0.00 46.61 4.69
3634 5596 6.372103 CACAGTAGAATATACTACTCCCTCCG 59.628 46.154 0.00 0.00 46.61 4.63
3635 5597 7.460071 TCACAGTAGAATATACTACTCCCTCC 58.540 42.308 0.00 0.00 46.61 4.30
3636 5598 8.921353 TTCACAGTAGAATATACTACTCCCTC 57.079 38.462 0.00 0.00 46.61 4.30
3637 5599 9.884814 AATTCACAGTAGAATATACTACTCCCT 57.115 33.333 0.00 0.00 46.61 4.20
3800 5942 5.122239 ACGTCATGTTTGTATGTTCAGATGG 59.878 40.000 0.00 0.00 0.00 3.51
3884 6200 5.753744 TGTAATGTAGGACGTTTTTGCAAG 58.246 37.500 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.