Multiple sequence alignment - TraesCS7D01G408000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G408000 chr7D 100.000 6197 0 0 1 6197 525766021 525772217 0.000000e+00 11444.0
1 TraesCS7D01G408000 chr7D 95.238 168 2 5 1942 2109 397555077 397554916 1.710000e-65 261.0
2 TraesCS7D01G408000 chr7B 89.737 3342 246 45 2111 5414 562402679 562405961 0.000000e+00 4181.0
3 TraesCS7D01G408000 chr7B 95.699 1488 41 11 463 1945 562401206 562402675 0.000000e+00 2372.0
4 TraesCS7D01G408000 chr7B 87.955 714 33 27 5502 6195 562406450 562407130 0.000000e+00 793.0
5 TraesCS7D01G408000 chr7B 89.565 230 16 4 199 428 562393127 562393348 1.020000e-72 285.0
6 TraesCS7D01G408000 chr7B 92.737 179 7 5 1935 2113 102234485 102234313 2.870000e-63 254.0
7 TraesCS7D01G408000 chr7B 89.623 106 9 2 119 224 562392658 562392761 3.900000e-27 134.0
8 TraesCS7D01G408000 chr7B 84.444 90 7 2 5422 5507 562406277 562406363 1.430000e-11 82.4
9 TraesCS7D01G408000 chr7A 90.989 2841 161 26 2111 4911 606323561 606326346 0.000000e+00 3740.0
10 TraesCS7D01G408000 chr7A 91.835 1629 79 19 355 1936 606321927 606323548 0.000000e+00 2222.0
11 TraesCS7D01G408000 chr7A 92.233 515 25 10 4909 5420 606327397 606327899 0.000000e+00 715.0
12 TraesCS7D01G408000 chr7A 85.933 718 39 17 5516 6195 606328080 606328773 0.000000e+00 710.0
13 TraesCS7D01G408000 chr7A 94.220 173 4 5 1942 2114 494786829 494786995 6.160000e-65 259.0
14 TraesCS7D01G408000 chr6D 75.499 702 116 37 3340 4001 60140792 60141477 6.080000e-75 292.0
15 TraesCS7D01G408000 chr6D 91.358 162 14 0 5016 5177 60142028 60142189 8.090000e-54 222.0
16 TraesCS7D01G408000 chr6B 75.434 692 121 35 3340 3996 133994582 133995259 2.190000e-74 291.0
17 TraesCS7D01G408000 chr6B 89.375 160 17 0 5016 5175 133995968 133996127 1.050000e-47 202.0
18 TraesCS7D01G408000 chr3D 94.767 172 3 5 1942 2113 187836469 187836304 4.760000e-66 263.0
19 TraesCS7D01G408000 chr3D 88.136 118 9 1 3 120 91822142 91822254 1.080000e-27 135.0
20 TraesCS7D01G408000 chr3A 94.767 172 3 5 1942 2113 238686210 238686375 4.760000e-66 263.0
21 TraesCS7D01G408000 chr5D 94.706 170 3 5 1940 2109 59947845 59947682 6.160000e-65 259.0
22 TraesCS7D01G408000 chr5D 86.885 122 10 2 3 123 370953295 370953179 1.400000e-26 132.0
23 TraesCS7D01G408000 chr5D 84.167 120 15 3 3 121 524592928 524592812 5.080000e-21 113.0
24 TraesCS7D01G408000 chr4D 92.818 181 5 7 1933 2113 326382441 326382613 7.970000e-64 255.0
25 TraesCS7D01G408000 chr5B 90.404 198 11 7 1913 2109 358272021 358271831 2.870000e-63 254.0
26 TraesCS7D01G408000 chr5B 89.848 197 11 8 1938 2134 222353364 222353551 1.730000e-60 244.0
27 TraesCS7D01G408000 chr6A 92.593 162 12 0 5016 5177 76634380 76634541 3.740000e-57 233.0
28 TraesCS7D01G408000 chr6A 90.000 140 14 0 3340 3479 76633205 76633344 1.370000e-41 182.0
29 TraesCS7D01G408000 chr1D 88.288 111 9 2 12 122 467601922 467602028 5.040000e-26 130.0
30 TraesCS7D01G408000 chrUn 83.193 119 14 2 3 120 236261701 236261814 3.060000e-18 104.0
31 TraesCS7D01G408000 chrUn 83.193 119 14 2 3 120 275752904 275753017 3.060000e-18 104.0
32 TraesCS7D01G408000 chrUn 83.193 119 14 2 3 120 393889168 393889281 3.060000e-18 104.0
33 TraesCS7D01G408000 chrUn 82.353 119 15 4 3 120 154152305 154152418 1.420000e-16 99.0
34 TraesCS7D01G408000 chr2A 83.193 119 14 2 3 120 22966279 22966392 3.060000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G408000 chr7D 525766021 525772217 6196 False 11444.00 11444 100.00000 1 6197 1 chr7D.!!$F1 6196
1 TraesCS7D01G408000 chr7B 562401206 562407130 5924 False 1857.10 4181 89.45875 463 6195 4 chr7B.!!$F2 5732
2 TraesCS7D01G408000 chr7B 562392658 562393348 690 False 209.50 285 89.59400 119 428 2 chr7B.!!$F1 309
3 TraesCS7D01G408000 chr7A 606321927 606328773 6846 False 1846.75 3740 90.24750 355 6195 4 chr7A.!!$F2 5840
4 TraesCS7D01G408000 chr6D 60140792 60142189 1397 False 257.00 292 83.42850 3340 5177 2 chr6D.!!$F1 1837
5 TraesCS7D01G408000 chr6B 133994582 133996127 1545 False 246.50 291 82.40450 3340 5175 2 chr6B.!!$F1 1835
6 TraesCS7D01G408000 chr6A 76633205 76634541 1336 False 207.50 233 91.29650 3340 5177 2 chr6A.!!$F1 1837

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
75 76 0.041926 GCGCTAAAAACCACGTCGTT 60.042 50.000 0.00 0.00 0.00 3.85 F
212 602 0.179045 CACTAGATGGGGGAAAGCCG 60.179 60.000 0.00 0.00 33.83 5.52 F
351 741 0.476338 TGTGCCAGCAAAGGAACCTA 59.524 50.000 0.00 0.00 36.26 3.08 F
2121 2564 0.613260 GGGAGTACATGTGTGCCTCA 59.387 55.000 9.11 0.00 32.44 3.86 F
2197 2640 1.000717 GACAATGGTTTGGTTCCACGG 60.001 52.381 0.00 0.00 37.81 4.94 F
2823 3287 1.242076 CCTGGCACTGAAACTTCCTG 58.758 55.000 0.00 0.00 0.00 3.86 F
4499 5306 0.661020 ACAACAGCACCAACGTTAGC 59.339 50.000 0.00 5.93 0.00 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1561 1982 0.109532 TCCCCTGCAAATCGTCACAA 59.890 50.000 0.00 0.00 0.00 3.33 R
2099 2542 0.107654 GGCACACATGTACTCCCTCC 60.108 60.000 0.00 0.00 0.00 4.30 R
2197 2640 0.449388 CCTTGAGCAGGCGAATTGTC 59.551 55.000 0.00 0.00 35.13 3.18 R
3786 4283 1.817357 CCTCATCTGCTGCAGTTTCA 58.183 50.000 27.24 10.28 32.61 2.69 R
4206 5009 9.490379 GAAATTACTCGGGTATTGATAAGACAT 57.510 33.333 0.00 0.00 0.00 3.06 R
4736 5566 1.272490 TCACTCGCTTCGACCTCAAAT 59.728 47.619 0.00 0.00 0.00 2.32 R
5399 7300 0.179045 CCCCAGCAATCGTAAGGGAG 60.179 60.000 0.00 0.00 42.25 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.978010 CTTCCCCGCACGCTTGTT 60.978 61.111 0.00 0.00 0.00 2.83
19 20 2.517402 TTCCCCGCACGCTTGTTT 60.517 55.556 0.00 0.00 0.00 2.83
20 21 2.458006 CTTCCCCGCACGCTTGTTTC 62.458 60.000 0.00 0.00 0.00 2.78
21 22 4.038080 CCCCGCACGCTTGTTTCC 62.038 66.667 0.00 0.00 0.00 3.13
22 23 3.283684 CCCGCACGCTTGTTTCCA 61.284 61.111 0.00 0.00 0.00 3.53
23 24 2.252260 CCGCACGCTTGTTTCCAG 59.748 61.111 0.00 0.00 0.00 3.86
24 25 2.427410 CGCACGCTTGTTTCCAGC 60.427 61.111 0.00 0.00 0.00 4.85
25 26 2.050077 GCACGCTTGTTTCCAGCC 60.050 61.111 0.00 0.00 0.00 4.85
26 27 2.844451 GCACGCTTGTTTCCAGCCA 61.844 57.895 0.00 0.00 0.00 4.75
27 28 1.008538 CACGCTTGTTTCCAGCCAC 60.009 57.895 0.00 0.00 0.00 5.01
28 29 2.193536 ACGCTTGTTTCCAGCCACC 61.194 57.895 0.00 0.00 0.00 4.61
29 30 2.644992 GCTTGTTTCCAGCCACCG 59.355 61.111 0.00 0.00 0.00 4.94
30 31 2.644992 CTTGTTTCCAGCCACCGC 59.355 61.111 0.00 0.00 0.00 5.68
55 56 4.072088 CGCGAAACCGTCCAGCAC 62.072 66.667 0.00 0.00 0.00 4.40
69 70 3.823450 GCACGCGCTAAAAACCAC 58.177 55.556 5.73 0.00 34.30 4.16
70 71 2.072654 GCACGCGCTAAAAACCACG 61.073 57.895 5.73 0.00 34.30 4.94
71 72 1.277440 CACGCGCTAAAAACCACGT 59.723 52.632 5.73 0.00 0.00 4.49
72 73 0.720173 CACGCGCTAAAAACCACGTC 60.720 55.000 5.73 0.00 0.00 4.34
73 74 1.506277 CGCGCTAAAAACCACGTCG 60.506 57.895 5.56 0.00 0.00 5.12
74 75 1.566077 GCGCTAAAAACCACGTCGT 59.434 52.632 0.00 0.00 0.00 4.34
75 76 0.041926 GCGCTAAAAACCACGTCGTT 60.042 50.000 0.00 0.00 0.00 3.85
76 77 1.595246 GCGCTAAAAACCACGTCGTTT 60.595 47.619 5.40 5.40 37.56 3.60
77 78 2.707392 CGCTAAAAACCACGTCGTTTT 58.293 42.857 16.81 16.81 45.53 2.43
82 83 2.735643 AAACCACGTCGTTTTTACCG 57.264 45.000 5.40 0.00 31.94 4.02
83 84 0.304401 AACCACGTCGTTTTTACCGC 59.696 50.000 0.00 0.00 0.00 5.68
84 85 1.154800 CCACGTCGTTTTTACCGCG 60.155 57.895 0.00 0.00 0.00 6.46
85 86 1.785533 CACGTCGTTTTTACCGCGC 60.786 57.895 0.00 0.00 0.00 6.86
86 87 2.566262 CGTCGTTTTTACCGCGCG 60.566 61.111 25.67 25.67 0.00 6.86
87 88 2.862000 GTCGTTTTTACCGCGCGC 60.862 61.111 27.36 23.91 0.00 6.86
88 89 4.412541 TCGTTTTTACCGCGCGCG 62.413 61.111 43.73 43.73 39.44 6.86
89 90 4.706166 CGTTTTTACCGCGCGCGT 62.706 61.111 45.51 35.15 37.81 6.01
90 91 3.154311 GTTTTTACCGCGCGCGTG 61.154 61.111 45.51 37.57 37.81 5.34
104 105 2.127758 CGTGCCTTTTGACGCGAC 60.128 61.111 15.93 7.62 42.13 5.19
105 106 2.594962 CGTGCCTTTTGACGCGACT 61.595 57.895 15.93 0.00 42.13 4.18
106 107 1.279527 CGTGCCTTTTGACGCGACTA 61.280 55.000 15.93 0.00 42.13 2.59
107 108 1.076332 GTGCCTTTTGACGCGACTAT 58.924 50.000 15.93 0.00 0.00 2.12
108 109 1.463444 GTGCCTTTTGACGCGACTATT 59.537 47.619 15.93 0.00 0.00 1.73
109 110 1.463056 TGCCTTTTGACGCGACTATTG 59.537 47.619 15.93 0.00 0.00 1.90
110 111 1.730064 GCCTTTTGACGCGACTATTGA 59.270 47.619 15.93 0.00 0.00 2.57
111 112 2.158841 GCCTTTTGACGCGACTATTGAA 59.841 45.455 15.93 0.00 0.00 2.69
112 113 3.725010 GCCTTTTGACGCGACTATTGAAG 60.725 47.826 15.93 4.54 0.00 3.02
113 114 3.678072 CCTTTTGACGCGACTATTGAAGA 59.322 43.478 15.93 0.00 0.00 2.87
114 115 4.330074 CCTTTTGACGCGACTATTGAAGAT 59.670 41.667 15.93 0.00 0.00 2.40
115 116 4.840401 TTTGACGCGACTATTGAAGATG 57.160 40.909 15.93 0.00 0.00 2.90
116 117 2.193447 TGACGCGACTATTGAAGATGC 58.807 47.619 15.93 0.00 0.00 3.91
117 118 2.159240 TGACGCGACTATTGAAGATGCT 60.159 45.455 15.93 0.00 0.00 3.79
124 125 6.155827 GCGACTATTGAAGATGCTCTAATCT 58.844 40.000 0.00 0.00 38.59 2.40
134 135 4.767928 AGATGCTCTAATCTAGTTACCGGG 59.232 45.833 6.32 0.00 35.09 5.73
137 138 4.340381 TGCTCTAATCTAGTTACCGGGAAC 59.660 45.833 22.80 22.80 0.00 3.62
169 170 2.156504 GCAACTCTTGTGTGATCAGTCG 59.843 50.000 0.00 0.00 0.00 4.18
206 596 2.126882 CCAATCACACTAGATGGGGGA 58.873 52.381 0.00 0.00 35.75 4.81
212 602 0.179045 CACTAGATGGGGGAAAGCCG 60.179 60.000 0.00 0.00 33.83 5.52
213 603 1.227973 CTAGATGGGGGAAAGCCGC 60.228 63.158 0.00 0.00 45.88 6.53
238 628 5.531287 GGGTGTGAAGGATACAAATGATACC 59.469 44.000 0.00 0.00 41.41 2.73
239 629 5.236478 GGTGTGAAGGATACAAATGATACCG 59.764 44.000 0.00 0.00 41.41 4.02
242 632 6.537301 TGTGAAGGATACAAATGATACCGTTC 59.463 38.462 0.00 0.00 41.41 3.95
262 652 6.071463 CGTTCCAAATTAACAGAGTCGAAAG 58.929 40.000 0.00 0.00 0.00 2.62
333 723 5.399301 GTGACCACATTCTCGAAAATGTTTG 59.601 40.000 14.36 11.03 45.29 2.93
351 741 0.476338 TGTGCCAGCAAAGGAACCTA 59.524 50.000 0.00 0.00 36.26 3.08
357 747 4.219725 TGCCAGCAAAGGAACCTAATTTAC 59.780 41.667 0.00 0.00 0.00 2.01
424 814 4.046462 TCTTTTGTCGACTCTACCGTTTG 58.954 43.478 17.92 0.00 0.00 2.93
460 877 5.878332 TGTATTTTCGTGACTGCAATCAT 57.122 34.783 0.00 0.00 0.00 2.45
461 878 6.976636 TGTATTTTCGTGACTGCAATCATA 57.023 33.333 0.00 0.00 0.00 2.15
462 879 7.371126 TGTATTTTCGTGACTGCAATCATAA 57.629 32.000 0.00 0.00 0.00 1.90
548 965 2.503375 GTACACGGCGGTCACGAG 60.503 66.667 13.24 0.00 44.60 4.18
687 1104 3.244700 CCATCTTCCATCCATCAGGTACC 60.245 52.174 2.73 2.73 35.89 3.34
720 1137 1.290732 CCTCCCTCTTCTTCCTCCTCT 59.709 57.143 0.00 0.00 0.00 3.69
763 1180 5.297547 TCAACTCGTCAAGCTAAATTCAGT 58.702 37.500 0.00 0.00 0.00 3.41
790 1207 2.619931 TCTCTTCCTGATGACCAACCA 58.380 47.619 0.00 0.00 0.00 3.67
792 1209 1.001974 TCTTCCTGATGACCAACCACG 59.998 52.381 0.00 0.00 0.00 4.94
795 1212 1.628340 TCCTGATGACCAACCACGATT 59.372 47.619 0.00 0.00 0.00 3.34
1095 1513 3.660111 GGCAGCTGTTTCGCCGTT 61.660 61.111 16.64 0.00 35.79 4.44
1112 1530 1.228429 TTCCAAGAACCGGGCCAAG 60.228 57.895 6.32 0.00 0.00 3.61
1263 1681 1.530655 CGTCAAACCAAAGGCCCCT 60.531 57.895 0.00 0.00 0.00 4.79
1335 1753 0.655208 TGTTGCTTGTGTACAGTGCG 59.345 50.000 0.00 0.00 32.52 5.34
1336 1754 0.934496 GTTGCTTGTGTACAGTGCGA 59.066 50.000 0.00 0.00 32.52 5.10
1490 1908 2.381911 GTGCTCCCATTGTTCATCCAT 58.618 47.619 0.00 0.00 0.00 3.41
1711 2134 6.016555 TGAGACTGGGATCGGATTTATCATA 58.983 40.000 0.00 0.00 0.00 2.15
1828 2271 6.823182 TCATGTAATAATCCAGACAACCACTG 59.177 38.462 0.00 0.00 35.43 3.66
1920 2363 6.311200 GGATGCATTGAAGGTATTTGACAAAC 59.689 38.462 0.00 0.00 0.00 2.93
1923 2366 6.867816 TGCATTGAAGGTATTTGACAAACATC 59.132 34.615 1.94 0.00 0.00 3.06
1947 2390 8.958119 TCACTAATTATTTGTCATGTACTCCC 57.042 34.615 0.00 0.00 0.00 4.30
1948 2391 8.768397 TCACTAATTATTTGTCATGTACTCCCT 58.232 33.333 0.00 0.00 0.00 4.20
1949 2392 9.046296 CACTAATTATTTGTCATGTACTCCCTC 57.954 37.037 0.00 0.00 0.00 4.30
1950 2393 8.211629 ACTAATTATTTGTCATGTACTCCCTCC 58.788 37.037 0.00 0.00 0.00 4.30
1951 2394 3.543680 ATTTGTCATGTACTCCCTCCG 57.456 47.619 0.00 0.00 0.00 4.63
1952 2395 2.225382 TTGTCATGTACTCCCTCCGA 57.775 50.000 0.00 0.00 0.00 4.55
1953 2396 2.454336 TGTCATGTACTCCCTCCGAT 57.546 50.000 0.00 0.00 0.00 4.18
1954 2397 2.747177 TGTCATGTACTCCCTCCGATT 58.253 47.619 0.00 0.00 0.00 3.34
1955 2398 2.693591 TGTCATGTACTCCCTCCGATTC 59.306 50.000 0.00 0.00 0.00 2.52
1956 2399 2.036089 GTCATGTACTCCCTCCGATTCC 59.964 54.545 0.00 0.00 0.00 3.01
1957 2400 2.091278 TCATGTACTCCCTCCGATTCCT 60.091 50.000 0.00 0.00 0.00 3.36
1958 2401 3.139584 TCATGTACTCCCTCCGATTCCTA 59.860 47.826 0.00 0.00 0.00 2.94
1959 2402 3.675348 TGTACTCCCTCCGATTCCTAA 57.325 47.619 0.00 0.00 0.00 2.69
1960 2403 3.563223 TGTACTCCCTCCGATTCCTAAG 58.437 50.000 0.00 0.00 0.00 2.18
1961 2404 2.850695 ACTCCCTCCGATTCCTAAGT 57.149 50.000 0.00 0.00 0.00 2.24
1962 2405 3.967467 ACTCCCTCCGATTCCTAAGTA 57.033 47.619 0.00 0.00 0.00 2.24
1963 2406 3.564264 ACTCCCTCCGATTCCTAAGTAC 58.436 50.000 0.00 0.00 0.00 2.73
1964 2407 3.053095 ACTCCCTCCGATTCCTAAGTACA 60.053 47.826 0.00 0.00 0.00 2.90
1965 2408 3.563223 TCCCTCCGATTCCTAAGTACAG 58.437 50.000 0.00 0.00 0.00 2.74
1966 2409 3.053095 TCCCTCCGATTCCTAAGTACAGT 60.053 47.826 0.00 0.00 0.00 3.55
1967 2410 4.166725 TCCCTCCGATTCCTAAGTACAGTA 59.833 45.833 0.00 0.00 0.00 2.74
1968 2411 5.078256 CCCTCCGATTCCTAAGTACAGTAT 58.922 45.833 0.00 0.00 0.00 2.12
1969 2412 6.044754 TCCCTCCGATTCCTAAGTACAGTATA 59.955 42.308 0.00 0.00 0.00 1.47
1970 2413 6.718454 CCCTCCGATTCCTAAGTACAGTATAA 59.282 42.308 0.00 0.00 0.00 0.98
1971 2414 7.094291 CCCTCCGATTCCTAAGTACAGTATAAG 60.094 44.444 0.00 0.00 0.00 1.73
1972 2415 7.447853 CCTCCGATTCCTAAGTACAGTATAAGT 59.552 40.741 0.00 0.00 0.00 2.24
1973 2416 8.388484 TCCGATTCCTAAGTACAGTATAAGTC 57.612 38.462 0.00 0.00 0.00 3.01
1974 2417 8.216423 TCCGATTCCTAAGTACAGTATAAGTCT 58.784 37.037 0.00 0.00 0.00 3.24
1975 2418 8.848182 CCGATTCCTAAGTACAGTATAAGTCTT 58.152 37.037 0.00 0.00 0.00 3.01
2005 2448 8.307483 AGAGATTTCAATATGGACTACATACGG 58.693 37.037 0.00 0.00 44.41 4.02
2006 2449 8.190326 AGATTTCAATATGGACTACATACGGA 57.810 34.615 0.00 0.00 44.41 4.69
2007 2450 8.816894 AGATTTCAATATGGACTACATACGGAT 58.183 33.333 0.00 0.00 44.41 4.18
2008 2451 8.777865 ATTTCAATATGGACTACATACGGATG 57.222 34.615 5.94 5.94 44.41 3.51
2010 2453 8.411991 TTCAATATGGACTACATACGGATGTA 57.588 34.615 19.32 19.32 44.77 2.29
2011 2454 8.589701 TCAATATGGACTACATACGGATGTAT 57.410 34.615 20.64 9.39 45.42 2.29
2012 2455 9.689501 TCAATATGGACTACATACGGATGTATA 57.310 33.333 20.64 11.30 45.42 1.47
2017 2460 8.728337 TGGACTACATACGGATGTATATAGAC 57.272 38.462 20.64 10.95 45.42 2.59
2018 2461 7.493645 TGGACTACATACGGATGTATATAGACG 59.506 40.741 20.64 9.79 45.42 4.18
2019 2462 7.493971 GGACTACATACGGATGTATATAGACGT 59.506 40.741 20.64 12.85 45.42 4.34
2020 2463 9.521503 GACTACATACGGATGTATATAGACGTA 57.478 37.037 20.64 9.65 45.42 3.57
2021 2464 9.526713 ACTACATACGGATGTATATAGACGTAG 57.473 37.037 20.64 9.36 45.42 3.51
2022 2465 9.526713 CTACATACGGATGTATATAGACGTAGT 57.473 37.037 20.64 11.55 45.77 2.73
2023 2466 8.783833 ACATACGGATGTATATAGACGTAGTT 57.216 34.615 12.79 0.00 43.41 2.24
2024 2467 9.224267 ACATACGGATGTATATAGACGTAGTTT 57.776 33.333 12.79 0.00 43.41 2.66
2040 2483 7.684937 ACGTAGTTTAGAGTGTAGATTCACT 57.315 36.000 0.00 0.00 45.46 3.41
2050 2493 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2051 2494 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2052 2495 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2053 2496 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2054 2497 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2055 2498 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2056 2499 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2057 2500 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2058 2501 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2059 2502 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2060 2503 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2061 2504 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2062 2505 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
2063 2506 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
2064 2507 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
2065 2508 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
2066 2509 5.801531 TTTGCTCCGTATGTAGTCCATAT 57.198 39.130 0.00 0.00 38.29 1.78
2067 2510 5.801531 TTGCTCCGTATGTAGTCCATATT 57.198 39.130 0.00 0.00 38.29 1.28
2068 2511 5.134202 TGCTCCGTATGTAGTCCATATTG 57.866 43.478 0.00 0.00 38.29 1.90
2069 2512 4.021456 TGCTCCGTATGTAGTCCATATTGG 60.021 45.833 0.00 0.00 38.29 3.16
2070 2513 4.219944 GCTCCGTATGTAGTCCATATTGGA 59.780 45.833 0.00 0.00 45.98 3.53
2103 2546 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
2104 2547 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2105 2548 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2106 2549 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2107 2550 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2108 2551 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2109 2552 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
2112 2555 1.486211 AGGAACGGAGGGAGTACATG 58.514 55.000 0.00 0.00 0.00 3.21
2121 2564 0.613260 GGGAGTACATGTGTGCCTCA 59.387 55.000 9.11 0.00 32.44 3.86
2197 2640 1.000717 GACAATGGTTTGGTTCCACGG 60.001 52.381 0.00 0.00 37.81 4.94
2239 2682 7.463961 GGATAAGTTCCCTGATATCGTAAGA 57.536 40.000 0.00 0.00 45.49 2.10
2256 2699 4.332819 CGTAAGATTGTTCCCCTCATTCAC 59.667 45.833 0.00 0.00 43.02 3.18
2258 2701 5.779241 AAGATTGTTCCCCTCATTCACTA 57.221 39.130 0.00 0.00 0.00 2.74
2263 2706 6.575244 TTGTTCCCCTCATTCACTATGTAT 57.425 37.500 0.00 0.00 35.64 2.29
2368 2811 5.041191 ACCCTTATTCATCTGATGGACAC 57.959 43.478 17.06 0.00 0.00 3.67
2403 2846 5.893255 TGAGGGAAGATGGTAATGAAAATGG 59.107 40.000 0.00 0.00 0.00 3.16
2409 2853 3.883830 TGGTAATGAAAATGGCGCATT 57.116 38.095 10.83 4.34 35.39 3.56
2410 2854 4.991153 TGGTAATGAAAATGGCGCATTA 57.009 36.364 10.83 0.00 32.43 1.90
2411 2855 5.528043 TGGTAATGAAAATGGCGCATTAT 57.472 34.783 10.83 0.00 37.00 1.28
2412 2856 6.641169 TGGTAATGAAAATGGCGCATTATA 57.359 33.333 10.83 0.00 37.00 0.98
2413 2857 7.043961 TGGTAATGAAAATGGCGCATTATAA 57.956 32.000 10.83 0.00 37.00 0.98
2414 2858 7.665690 TGGTAATGAAAATGGCGCATTATAAT 58.334 30.769 10.83 0.00 37.00 1.28
2415 2859 8.797438 TGGTAATGAAAATGGCGCATTATAATA 58.203 29.630 10.83 0.00 37.00 0.98
2416 2860 9.801873 GGTAATGAAAATGGCGCATTATAATAT 57.198 29.630 10.83 0.00 37.00 1.28
2418 2862 8.619146 AATGAAAATGGCGCATTATAATATCG 57.381 30.769 10.83 12.36 32.43 2.92
2419 2863 6.027131 TGAAAATGGCGCATTATAATATCGC 58.973 36.000 24.46 24.46 44.39 4.58
2420 2864 5.559427 AAATGGCGCATTATAATATCGCA 57.441 34.783 29.19 21.03 46.60 5.10
2469 2921 4.888038 TGATATGTTGATCTGCTTGCAC 57.112 40.909 0.00 0.00 0.00 4.57
2585 3037 3.625764 GCATACGGCCAAGAAACTATCAA 59.374 43.478 2.24 0.00 36.11 2.57
2586 3038 4.275936 GCATACGGCCAAGAAACTATCAAT 59.724 41.667 2.24 0.00 36.11 2.57
2587 3039 5.560953 GCATACGGCCAAGAAACTATCAATC 60.561 44.000 2.24 0.00 36.11 2.67
2588 3040 4.222124 ACGGCCAAGAAACTATCAATCT 57.778 40.909 2.24 0.00 0.00 2.40
2589 3041 5.353394 ACGGCCAAGAAACTATCAATCTA 57.647 39.130 2.24 0.00 0.00 1.98
2590 3042 5.930135 ACGGCCAAGAAACTATCAATCTAT 58.070 37.500 2.24 0.00 0.00 1.98
2591 3043 5.992217 ACGGCCAAGAAACTATCAATCTATC 59.008 40.000 2.24 0.00 0.00 2.08
2592 3044 5.991606 CGGCCAAGAAACTATCAATCTATCA 59.008 40.000 2.24 0.00 0.00 2.15
2655 3107 6.637657 TGTATGAGCCTGAGATGCTATTATG 58.362 40.000 0.00 0.00 39.69 1.90
2664 3116 7.095910 CCTGAGATGCTATTATGTAGAACCTG 58.904 42.308 0.00 0.00 0.00 4.00
2794 3252 6.318648 TGAACAGTCAACAGCTTAAGTCATTT 59.681 34.615 4.02 0.00 0.00 2.32
2823 3287 1.242076 CCTGGCACTGAAACTTCCTG 58.758 55.000 0.00 0.00 0.00 3.86
2847 3311 9.904647 CTGAAAATAAATTCAAAATATGCCACG 57.095 29.630 0.00 0.00 38.75 4.94
2877 3341 3.636282 TTCGTCACAAGAATCTCGTCA 57.364 42.857 0.00 0.00 0.00 4.35
2895 3359 3.133003 CGTCAGGTACTTCCCAGATCATT 59.867 47.826 0.00 0.00 34.60 2.57
2905 3369 6.189859 ACTTCCCAGATCATTGAAATTAGCA 58.810 36.000 0.00 0.00 0.00 3.49
3289 3758 9.231297 CTCTTCTCTTGGTATTATGTTTTGGAA 57.769 33.333 0.00 0.00 0.00 3.53
3418 3887 1.298157 TTGGAGCAATCCGTTCTGCG 61.298 55.000 0.00 0.00 43.51 5.18
3606 4099 2.315176 TCATTTTATGGGCCATTCCGG 58.685 47.619 26.58 11.11 34.94 5.14
3697 4190 9.334947 CTCTATTGATTTTCATCCTGTGTACAT 57.665 33.333 0.00 0.00 0.00 2.29
4195 4998 1.400242 GCTAGTTTTGCCGCACAAGAG 60.400 52.381 0.00 0.00 40.06 2.85
4206 5009 2.938451 CCGCACAAGAGCATTTCTCATA 59.062 45.455 0.00 0.00 44.35 2.15
4227 5030 8.873186 TCATATGTCTTATCAATACCCGAGTA 57.127 34.615 1.90 0.00 0.00 2.59
4238 5045 6.342906 TCAATACCCGAGTAATTTCATCGTT 58.657 36.000 6.08 0.00 34.71 3.85
4284 5091 4.365514 TCAGTTGGTAGCCATTTCAAGA 57.634 40.909 0.00 0.00 31.53 3.02
4313 5120 5.009410 GGCCGCTAAAGTAGTACTAGATCAA 59.991 44.000 1.87 0.00 0.00 2.57
4318 5125 7.956403 CGCTAAAGTAGTACTAGATCAATACGG 59.044 40.741 1.87 0.00 0.00 4.02
4494 5301 2.598192 CTCAAAAACAACAGCACCAACG 59.402 45.455 0.00 0.00 0.00 4.10
4499 5306 0.661020 ACAACAGCACCAACGTTAGC 59.339 50.000 0.00 5.93 0.00 3.09
4562 5384 6.398234 TTTGCTTTTGTATTCCTGCTTGTA 57.602 33.333 0.00 0.00 0.00 2.41
4636 5461 2.990195 ACAGGTGGCCATATCATCCTA 58.010 47.619 9.72 0.00 0.00 2.94
4646 5471 7.994911 GTGGCCATATCATCCTATGAATGAATA 59.005 37.037 9.72 0.00 43.50 1.75
4736 5566 6.641169 TGCATGGTGTTTCTGTTGTTATAA 57.359 33.333 0.00 0.00 0.00 0.98
4746 5576 8.286800 TGTTTCTGTTGTTATAATTTGAGGTCG 58.713 33.333 0.00 0.00 0.00 4.79
4770 5600 3.251004 AGCGAGTGAAATTCTGAACCAAC 59.749 43.478 0.00 0.00 0.00 3.77
4779 5609 2.151502 TCTGAACCAACCAAAAGCCA 57.848 45.000 0.00 0.00 0.00 4.75
4780 5610 2.676748 TCTGAACCAACCAAAAGCCAT 58.323 42.857 0.00 0.00 0.00 4.40
4784 5614 3.964031 TGAACCAACCAAAAGCCATAACT 59.036 39.130 0.00 0.00 0.00 2.24
4791 5621 5.405935 ACCAAAAGCCATAACTTTGATCC 57.594 39.130 0.00 0.00 39.76 3.36
4793 5623 5.170748 CCAAAAGCCATAACTTTGATCCAC 58.829 41.667 0.00 0.00 39.76 4.02
4816 5646 7.445402 CCACCCTTATGAATGGTTATGAGTAAG 59.555 40.741 0.00 0.00 0.00 2.34
4878 5708 5.696270 AGAAAATGATCTCGCATGCGTTATA 59.304 36.000 36.50 21.40 40.74 0.98
4879 5709 6.369890 AGAAAATGATCTCGCATGCGTTATAT 59.630 34.615 36.50 24.61 40.74 0.86
4937 6821 6.743110 TGAAAGAGAGGATCGAATGATGTAG 58.257 40.000 0.00 0.00 42.67 2.74
4960 6848 3.410631 TCATTTTGGCTCGTCTTGGTA 57.589 42.857 0.00 0.00 0.00 3.25
4992 6884 5.877031 AGTGAAATTCTGAAGCAATCATCG 58.123 37.500 0.00 0.00 37.44 3.84
5009 6901 7.116233 GCAATCATCGTACATTGTTTCCTTTTT 59.884 33.333 0.00 0.00 33.27 1.94
5010 6902 8.427012 CAATCATCGTACATTGTTTCCTTTTTG 58.573 33.333 0.00 0.00 0.00 2.44
5013 6905 3.738791 CGTACATTGTTTCCTTTTTGGCC 59.261 43.478 0.00 0.00 35.26 5.36
5025 6917 1.408969 TTTTGGCCTTTCAGGTGTCC 58.591 50.000 3.32 0.00 37.80 4.02
5197 7089 1.686325 GGGATCCGCTGCCAAGTAGA 61.686 60.000 5.45 0.00 34.90 2.59
5198 7090 0.178068 GGATCCGCTGCCAAGTAGAA 59.822 55.000 0.00 0.00 0.00 2.10
5199 7091 1.576356 GATCCGCTGCCAAGTAGAAG 58.424 55.000 0.00 0.00 0.00 2.85
5200 7092 0.179000 ATCCGCTGCCAAGTAGAAGG 59.821 55.000 0.00 0.00 0.00 3.46
5253 7145 6.449698 CCCCTGTGATTATTGATTAATGTGC 58.550 40.000 0.00 0.00 30.44 4.57
5256 7148 8.145767 CCCTGTGATTATTGATTAATGTGCAAT 58.854 33.333 0.00 0.00 36.35 3.56
5320 7213 5.437060 TGACCCTAAGCACTTGAATAATCC 58.563 41.667 0.00 0.00 0.00 3.01
5332 7225 3.857052 TGAATAATCCGCAAGTCTCGTT 58.143 40.909 0.00 0.00 0.00 3.85
5356 7249 9.257651 GTTCTAGTACATGACTGTTAGTTTGTT 57.742 33.333 0.00 0.00 39.39 2.83
5420 7321 0.463833 CCCTTACGATTGCTGGGGAC 60.464 60.000 0.00 0.00 36.17 4.46
5441 7652 5.998363 GGACTTGAATTTTCACTGGAGTACT 59.002 40.000 0.00 0.00 36.83 2.73
5507 7722 2.807967 TGGCGTGATTTTCTTCAGAGTG 59.192 45.455 0.00 0.00 0.00 3.51
5510 7725 3.666374 GCGTGATTTTCTTCAGAGTGCAG 60.666 47.826 0.00 0.00 0.00 4.41
5511 7726 3.742882 CGTGATTTTCTTCAGAGTGCAGA 59.257 43.478 0.00 0.00 0.00 4.26
5512 7727 4.376819 CGTGATTTTCTTCAGAGTGCAGAC 60.377 45.833 0.00 0.00 0.00 3.51
5513 7728 4.754114 GTGATTTTCTTCAGAGTGCAGACT 59.246 41.667 0.00 0.00 33.98 3.24
5538 7846 0.249615 CGATCGTGTGATCCCAGCAT 60.250 55.000 7.03 0.00 46.89 3.79
5539 7847 1.224075 GATCGTGTGATCCCAGCATG 58.776 55.000 0.00 0.00 44.39 4.06
5553 7861 0.897621 AGCATGGACGATGAGTGTGA 59.102 50.000 1.05 0.00 33.31 3.58
5652 7978 1.412453 AAGCACGGGACCCAACAGTA 61.412 55.000 12.15 0.00 0.00 2.74
5694 8020 1.639298 GCTTCTGGTAAGCACGCAGG 61.639 60.000 4.91 0.00 42.56 4.85
5695 8021 1.639298 CTTCTGGTAAGCACGCAGGC 61.639 60.000 0.00 0.00 0.00 4.85
5696 8022 2.358615 CTGGTAAGCACGCAGGCA 60.359 61.111 0.00 0.00 35.83 4.75
5758 8088 8.366671 AGTAATTAACTCCGATCATTAAGTGC 57.633 34.615 0.00 0.00 30.33 4.40
5914 8272 3.237741 CCCTCCTCATCCGCTCCC 61.238 72.222 0.00 0.00 0.00 4.30
5963 8321 7.809806 GGCCTCGAAAGATAATAATTTCAATGG 59.190 37.037 0.00 0.00 40.84 3.16
5976 8334 9.461312 AATAATTTCAATGGAGTACAGCAGTAA 57.539 29.630 0.00 0.00 30.67 2.24
5977 8335 7.944729 AATTTCAATGGAGTACAGCAGTAAT 57.055 32.000 0.00 0.00 30.67 1.89
6006 8369 5.048504 ACTTCGTCCAAGTCATAACGTTCTA 60.049 40.000 2.82 0.00 42.07 2.10
6016 8379 5.008415 AGTCATAACGTTCTAGTACCATCCG 59.992 44.000 2.82 0.00 0.00 4.18
6018 8381 3.772060 AACGTTCTAGTACCATCCGTC 57.228 47.619 0.00 0.00 0.00 4.79
6049 8412 1.372499 GTACTCCACGTCGCTGCAA 60.372 57.895 0.00 0.00 0.00 4.08
6145 8517 5.300969 AGTCATTCAACATTCATCCGTTG 57.699 39.130 0.00 0.00 43.09 4.10
6146 8518 4.156556 AGTCATTCAACATTCATCCGTTGG 59.843 41.667 0.00 0.00 42.22 3.77
6147 8519 3.119531 TCATTCAACATTCATCCGTTGGC 60.120 43.478 0.00 0.00 42.22 4.52
6148 8520 1.173043 TCAACATTCATCCGTTGGCC 58.827 50.000 0.00 0.00 42.22 5.36
6166 8539 2.005370 CCCATTCATTAGGCATGGCT 57.995 50.000 26.37 26.37 36.83 4.75
6195 8568 3.739810 CCTCATCACTGCTTATCATCACG 59.260 47.826 0.00 0.00 0.00 4.35
6196 8569 3.126073 TCATCACTGCTTATCATCACGC 58.874 45.455 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.458006 GAAACAAGCGTGCGGGGAAG 62.458 60.000 0.00 0.00 0.00 3.46
2 3 2.517402 AAACAAGCGTGCGGGGAA 60.517 55.556 0.00 0.00 0.00 3.97
3 4 2.975799 GAAACAAGCGTGCGGGGA 60.976 61.111 0.00 0.00 0.00 4.81
4 5 4.038080 GGAAACAAGCGTGCGGGG 62.038 66.667 0.00 0.00 0.00 5.73
5 6 3.254014 CTGGAAACAAGCGTGCGGG 62.254 63.158 0.00 0.00 42.06 6.13
6 7 2.252260 CTGGAAACAAGCGTGCGG 59.748 61.111 0.00 0.00 42.06 5.69
7 8 2.427410 GCTGGAAACAAGCGTGCG 60.427 61.111 0.00 0.00 42.06 5.34
8 9 2.050077 GGCTGGAAACAAGCGTGC 60.050 61.111 0.00 0.00 42.06 5.34
9 10 1.008538 GTGGCTGGAAACAAGCGTG 60.009 57.895 0.00 0.00 42.06 5.34
10 11 2.193536 GGTGGCTGGAAACAAGCGT 61.194 57.895 0.00 0.00 42.06 5.07
11 12 2.644992 GGTGGCTGGAAACAAGCG 59.355 61.111 0.00 0.00 42.06 4.68
12 13 2.644992 CGGTGGCTGGAAACAAGC 59.355 61.111 0.00 0.00 42.06 4.01
13 14 2.644992 GCGGTGGCTGGAAACAAG 59.355 61.111 0.00 0.00 42.06 3.16
38 39 4.072088 GTGCTGGACGGTTTCGCG 62.072 66.667 0.00 0.00 40.63 5.87
39 40 4.072088 CGTGCTGGACGGTTTCGC 62.072 66.667 14.19 0.00 44.85 4.70
52 53 2.072654 CGTGGTTTTTAGCGCGTGC 61.073 57.895 14.39 14.39 43.24 5.34
53 54 0.720173 GACGTGGTTTTTAGCGCGTG 60.720 55.000 18.66 0.00 32.56 5.34
54 55 1.566077 GACGTGGTTTTTAGCGCGT 59.434 52.632 14.56 14.56 35.20 6.01
55 56 1.506277 CGACGTGGTTTTTAGCGCG 60.506 57.895 0.00 0.00 0.00 6.86
56 57 0.041926 AACGACGTGGTTTTTAGCGC 60.042 50.000 10.40 0.00 0.00 5.92
57 58 2.372148 AAACGACGTGGTTTTTAGCG 57.628 45.000 21.12 4.46 36.78 4.26
63 64 1.267982 GCGGTAAAAACGACGTGGTTT 60.268 47.619 21.12 21.12 41.65 3.27
64 65 0.304401 GCGGTAAAAACGACGTGGTT 59.696 50.000 10.40 10.40 0.00 3.67
65 66 1.820233 CGCGGTAAAAACGACGTGGT 61.820 55.000 0.00 0.00 33.65 4.16
66 67 1.154800 CGCGGTAAAAACGACGTGG 60.155 57.895 0.00 0.00 33.65 4.94
67 68 1.785533 GCGCGGTAAAAACGACGTG 60.786 57.895 8.83 0.00 39.57 4.49
68 69 2.545829 GCGCGGTAAAAACGACGT 59.454 55.556 8.83 0.00 34.88 4.34
69 70 2.566262 CGCGCGGTAAAAACGACG 60.566 61.111 24.84 0.00 35.27 5.12
70 71 2.862000 GCGCGCGGTAAAAACGAC 60.862 61.111 33.06 6.44 0.00 4.34
71 72 4.412541 CGCGCGCGGTAAAAACGA 62.413 61.111 43.28 0.00 35.56 3.85
87 88 1.279527 TAGTCGCGTCAAAAGGCACG 61.280 55.000 5.77 0.00 39.09 5.34
88 89 1.076332 ATAGTCGCGTCAAAAGGCAC 58.924 50.000 5.77 0.00 36.04 5.01
89 90 1.463056 CAATAGTCGCGTCAAAAGGCA 59.537 47.619 5.77 0.00 36.04 4.75
90 91 1.730064 TCAATAGTCGCGTCAAAAGGC 59.270 47.619 5.77 0.00 0.00 4.35
91 92 3.678072 TCTTCAATAGTCGCGTCAAAAGG 59.322 43.478 5.77 0.00 0.00 3.11
92 93 4.903638 TCTTCAATAGTCGCGTCAAAAG 57.096 40.909 5.77 2.72 0.00 2.27
93 94 4.435518 GCATCTTCAATAGTCGCGTCAAAA 60.436 41.667 5.77 0.00 0.00 2.44
94 95 3.062099 GCATCTTCAATAGTCGCGTCAAA 59.938 43.478 5.77 0.00 0.00 2.69
95 96 2.603110 GCATCTTCAATAGTCGCGTCAA 59.397 45.455 5.77 0.00 0.00 3.18
96 97 2.159240 AGCATCTTCAATAGTCGCGTCA 60.159 45.455 5.77 0.00 0.00 4.35
97 98 2.464865 AGCATCTTCAATAGTCGCGTC 58.535 47.619 5.77 0.00 0.00 5.19
98 99 2.464865 GAGCATCTTCAATAGTCGCGT 58.535 47.619 5.77 0.00 0.00 6.01
112 113 4.765856 TCCCGGTAACTAGATTAGAGCATC 59.234 45.833 0.00 0.00 0.00 3.91
113 114 4.737578 TCCCGGTAACTAGATTAGAGCAT 58.262 43.478 0.00 0.00 0.00 3.79
114 115 4.174704 TCCCGGTAACTAGATTAGAGCA 57.825 45.455 0.00 0.00 0.00 4.26
115 116 4.261952 GGTTCCCGGTAACTAGATTAGAGC 60.262 50.000 9.99 0.00 0.00 4.09
116 117 4.280425 GGGTTCCCGGTAACTAGATTAGAG 59.720 50.000 9.99 0.00 0.00 2.43
117 118 4.218312 GGGTTCCCGGTAACTAGATTAGA 58.782 47.826 9.99 0.00 0.00 2.10
124 125 4.324176 GGTTAATTGGGTTCCCGGTAACTA 60.324 45.833 9.99 0.00 0.00 2.24
134 135 2.817844 AGAGTTGCGGTTAATTGGGTTC 59.182 45.455 0.00 0.00 0.00 3.62
137 138 2.556622 ACAAGAGTTGCGGTTAATTGGG 59.443 45.455 0.00 0.00 0.00 4.12
139 140 3.974401 CACACAAGAGTTGCGGTTAATTG 59.026 43.478 0.00 0.00 0.00 2.32
140 141 3.880490 TCACACAAGAGTTGCGGTTAATT 59.120 39.130 0.00 0.00 0.00 1.40
148 149 2.156504 CGACTGATCACACAAGAGTTGC 59.843 50.000 0.00 0.00 0.00 4.17
149 150 3.642705 TCGACTGATCACACAAGAGTTG 58.357 45.455 0.00 0.00 0.00 3.16
169 170 9.727627 GTGTGATTGGATTTATTCAATTCTCTC 57.272 33.333 0.00 0.00 34.18 3.20
206 596 2.978010 CTTCACACCCGCGGCTTT 60.978 61.111 22.85 2.23 0.00 3.51
212 602 1.816074 TTTGTATCCTTCACACCCGC 58.184 50.000 0.00 0.00 0.00 6.13
213 603 3.605634 TCATTTGTATCCTTCACACCCG 58.394 45.455 0.00 0.00 0.00 5.28
238 628 5.585500 TTCGACTCTGTTAATTTGGAACG 57.415 39.130 0.00 0.00 0.00 3.95
239 629 5.851703 GCTTTCGACTCTGTTAATTTGGAAC 59.148 40.000 0.00 0.00 0.00 3.62
242 632 4.455877 AGGCTTTCGACTCTGTTAATTTGG 59.544 41.667 0.00 0.00 0.00 3.28
251 641 4.552166 TTTCAAAAGGCTTTCGACTCTG 57.448 40.909 13.76 6.84 0.00 3.35
262 652 5.291971 TCTCAAGCTTGATTTTCAAAAGGC 58.708 37.500 28.57 0.00 35.73 4.35
305 695 1.079819 CGAGAATGTGGTCACGCCT 60.080 57.895 0.00 0.00 38.35 5.52
333 723 1.616159 TTAGGTTCCTTTGCTGGCAC 58.384 50.000 0.00 0.00 0.00 5.01
375 765 8.686334 TGATAAAATAAATCAGGTTCCTTGCTC 58.314 33.333 0.00 0.00 0.00 4.26
447 864 4.446371 AGCCTACTTATGATTGCAGTCAC 58.554 43.478 14.74 0.00 0.00 3.67
460 877 1.200716 CCAACGTGTCGAGCCTACTTA 59.799 52.381 0.00 0.00 0.00 2.24
461 878 0.038526 CCAACGTGTCGAGCCTACTT 60.039 55.000 0.00 0.00 0.00 2.24
462 879 1.177256 ACCAACGTGTCGAGCCTACT 61.177 55.000 0.00 0.00 0.00 2.57
574 991 7.440505 AGAGATCTCCTGTACTAACTAGACA 57.559 40.000 19.30 0.00 0.00 3.41
720 1137 0.400213 AGGGACGTGCAAATCTTGGA 59.600 50.000 9.96 0.00 0.00 3.53
763 1180 2.774234 GTCATCAGGAAGAGATTGGGGA 59.226 50.000 0.00 0.00 0.00 4.81
1095 1513 2.434331 CTTGGCCCGGTTCTTGGA 59.566 61.111 0.00 0.00 0.00 3.53
1179 1597 2.519541 TCCTCGATGCTCCTCCCG 60.520 66.667 0.00 0.00 0.00 5.14
1245 1663 1.530655 AGGGGCCTTTGGTTTGACG 60.531 57.895 0.84 0.00 0.00 4.35
1250 1668 2.115266 CGTCAGGGGCCTTTGGTT 59.885 61.111 0.84 0.00 0.00 3.67
1263 1681 3.356639 GATCTCAGGCGTGCCGTCA 62.357 63.158 5.02 0.00 41.95 4.35
1323 1741 3.297391 TGCAATCGCACTGTACACA 57.703 47.368 0.00 0.00 45.36 3.72
1335 1753 6.101997 CCCCTAAATTCAGTTTCTTGCAATC 58.898 40.000 0.00 0.00 0.00 2.67
1336 1754 5.569428 GCCCCTAAATTCAGTTTCTTGCAAT 60.569 40.000 0.00 0.00 0.00 3.56
1490 1908 4.985538 AGTAGATTTCAAGGCAACCTTCA 58.014 39.130 0.00 0.00 42.67 3.02
1561 1982 0.109532 TCCCCTGCAAATCGTCACAA 59.890 50.000 0.00 0.00 0.00 3.33
1567 1988 0.253044 TCCTCTTCCCCTGCAAATCG 59.747 55.000 0.00 0.00 0.00 3.34
1711 2134 6.379133 AGCTCCAACACATTCATCAAACATAT 59.621 34.615 0.00 0.00 0.00 1.78
1726 2149 3.815401 ACACACATTTAGAGCTCCAACAC 59.185 43.478 10.93 0.00 0.00 3.32
1828 2271 5.520288 CGTGCCTTATACACCTGCATATATC 59.480 44.000 0.00 0.00 34.45 1.63
1923 2366 8.964476 AGGGAGTACATGACAAATAATTAGTG 57.036 34.615 0.00 0.00 0.00 2.74
1936 2379 2.091278 AGGAATCGGAGGGAGTACATGA 60.091 50.000 0.00 0.00 0.00 3.07
1939 2382 3.053095 ACTTAGGAATCGGAGGGAGTACA 60.053 47.826 0.00 0.00 0.00 2.90
1941 2384 3.967467 ACTTAGGAATCGGAGGGAGTA 57.033 47.619 0.00 0.00 0.00 2.59
1942 2385 2.850695 ACTTAGGAATCGGAGGGAGT 57.149 50.000 0.00 0.00 0.00 3.85
1945 2388 3.297736 ACTGTACTTAGGAATCGGAGGG 58.702 50.000 0.00 0.00 0.00 4.30
1946 2389 7.447853 ACTTATACTGTACTTAGGAATCGGAGG 59.552 40.741 0.00 0.00 0.00 4.30
1947 2390 8.393671 ACTTATACTGTACTTAGGAATCGGAG 57.606 38.462 0.00 0.00 0.00 4.63
1948 2391 8.216423 AGACTTATACTGTACTTAGGAATCGGA 58.784 37.037 0.00 0.00 0.00 4.55
1949 2392 8.393671 AGACTTATACTGTACTTAGGAATCGG 57.606 38.462 0.00 0.00 0.00 4.18
1979 2422 8.307483 CCGTATGTAGTCCATATTGAAATCTCT 58.693 37.037 0.00 0.00 38.29 3.10
1980 2423 8.304596 TCCGTATGTAGTCCATATTGAAATCTC 58.695 37.037 0.00 0.00 38.29 2.75
1981 2424 8.190326 TCCGTATGTAGTCCATATTGAAATCT 57.810 34.615 0.00 0.00 38.29 2.40
1982 2425 8.873830 CATCCGTATGTAGTCCATATTGAAATC 58.126 37.037 0.00 0.00 38.29 2.17
1983 2426 8.375506 ACATCCGTATGTAGTCCATATTGAAAT 58.624 33.333 0.00 0.00 44.66 2.17
1984 2427 7.732025 ACATCCGTATGTAGTCCATATTGAAA 58.268 34.615 0.00 0.00 44.66 2.69
1985 2428 7.297936 ACATCCGTATGTAGTCCATATTGAA 57.702 36.000 0.00 0.00 44.66 2.69
1986 2429 6.911250 ACATCCGTATGTAGTCCATATTGA 57.089 37.500 0.00 0.00 44.66 2.57
2002 2445 9.149225 CTCTAAACTACGTCTATATACATCCGT 57.851 37.037 0.00 0.00 0.00 4.69
2003 2446 9.149225 ACTCTAAACTACGTCTATATACATCCG 57.851 37.037 0.00 0.00 0.00 4.18
2012 2455 9.610705 TGAATCTACACTCTAAACTACGTCTAT 57.389 33.333 0.00 0.00 0.00 1.98
2013 2456 8.877779 GTGAATCTACACTCTAAACTACGTCTA 58.122 37.037 0.00 0.00 37.73 2.59
2014 2457 7.607223 AGTGAATCTACACTCTAAACTACGTCT 59.393 37.037 0.00 0.00 46.36 4.18
2015 2458 7.750769 AGTGAATCTACACTCTAAACTACGTC 58.249 38.462 0.00 0.00 46.36 4.34
2016 2459 7.684937 AGTGAATCTACACTCTAAACTACGT 57.315 36.000 0.00 0.00 46.36 3.57
2028 2471 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
2029 2472 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2030 2473 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2031 2474 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2032 2475 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2033 2476 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2034 2477 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2035 2478 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2036 2479 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2037 2480 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2038 2481 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2039 2482 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
2040 2483 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
2041 2484 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
2042 2485 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
2043 2486 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
2044 2487 5.801531 ATATGGACTACATACGGAGCAAA 57.198 39.130 0.00 0.00 44.41 3.68
2045 2488 5.510690 CCAATATGGACTACATACGGAGCAA 60.511 44.000 0.00 0.00 44.41 3.91
2046 2489 4.021456 CCAATATGGACTACATACGGAGCA 60.021 45.833 0.00 0.00 44.41 4.26
2047 2490 4.219944 TCCAATATGGACTACATACGGAGC 59.780 45.833 0.00 0.00 42.67 4.70
2048 2491 5.977489 TCCAATATGGACTACATACGGAG 57.023 43.478 0.00 0.00 42.67 4.63
2077 2520 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
2078 2521 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
2079 2522 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2080 2523 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2081 2524 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2082 2525 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2083 2526 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2084 2527 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2085 2528 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
2086 2529 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
2087 2530 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
2088 2531 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
2089 2532 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
2090 2533 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
2091 2534 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
2092 2535 2.024655 ACATGTACTCCCTCCGTTCCTA 60.025 50.000 0.00 0.00 0.00 2.94
2093 2536 1.273098 ACATGTACTCCCTCCGTTCCT 60.273 52.381 0.00 0.00 0.00 3.36
2094 2537 1.134788 CACATGTACTCCCTCCGTTCC 60.135 57.143 0.00 0.00 0.00 3.62
2095 2538 1.549170 ACACATGTACTCCCTCCGTTC 59.451 52.381 0.00 0.00 0.00 3.95
2096 2539 1.275291 CACACATGTACTCCCTCCGTT 59.725 52.381 0.00 0.00 0.00 4.44
2097 2540 0.895530 CACACATGTACTCCCTCCGT 59.104 55.000 0.00 0.00 0.00 4.69
2098 2541 0.460284 GCACACATGTACTCCCTCCG 60.460 60.000 0.00 0.00 0.00 4.63
2099 2542 0.107654 GGCACACATGTACTCCCTCC 60.108 60.000 0.00 0.00 0.00 4.30
2100 2543 0.905357 AGGCACACATGTACTCCCTC 59.095 55.000 0.00 0.00 0.00 4.30
2101 2544 0.905357 GAGGCACACATGTACTCCCT 59.095 55.000 0.00 1.90 0.00 4.20
2102 2545 0.613260 TGAGGCACACATGTACTCCC 59.387 55.000 0.00 0.00 33.16 4.30
2103 2546 1.550524 TCTGAGGCACACATGTACTCC 59.449 52.381 0.00 0.00 33.16 3.85
2104 2547 3.319137 TTCTGAGGCACACATGTACTC 57.681 47.619 0.00 5.12 34.08 2.59
2105 2548 3.261643 TCATTCTGAGGCACACATGTACT 59.738 43.478 0.00 0.00 0.00 2.73
2106 2549 3.372206 GTCATTCTGAGGCACACATGTAC 59.628 47.826 0.00 0.00 0.00 2.90
2107 2550 3.261643 AGTCATTCTGAGGCACACATGTA 59.738 43.478 0.00 0.00 0.00 2.29
2108 2551 2.039480 AGTCATTCTGAGGCACACATGT 59.961 45.455 0.00 0.00 0.00 3.21
2109 2552 2.708051 AGTCATTCTGAGGCACACATG 58.292 47.619 0.00 0.00 0.00 3.21
2112 2555 2.225019 CACAAGTCATTCTGAGGCACAC 59.775 50.000 0.00 0.00 0.00 3.82
2121 2564 6.479884 AGGAATAAAGAGCACAAGTCATTCT 58.520 36.000 0.00 0.00 0.00 2.40
2197 2640 0.449388 CCTTGAGCAGGCGAATTGTC 59.551 55.000 0.00 0.00 35.13 3.18
2239 2682 5.456921 ACATAGTGAATGAGGGGAACAAT 57.543 39.130 0.00 0.00 39.07 2.71
2245 2688 5.466728 CGACAAATACATAGTGAATGAGGGG 59.533 44.000 0.00 0.00 39.07 4.79
2256 2699 5.408204 TGATGCAAGCGACAAATACATAG 57.592 39.130 0.00 0.00 0.00 2.23
2258 2701 4.700268 TTGATGCAAGCGACAAATACAT 57.300 36.364 0.00 0.00 0.00 2.29
2284 2727 9.784680 CATATGATTAGAAGCAAAGATATTGGC 57.215 33.333 0.00 0.00 0.00 4.52
2312 2755 7.327975 ACATCCGTGTAGACAATCTAAATTCA 58.672 34.615 0.00 0.00 36.63 2.57
2415 2859 9.764363 TCTGAAAAGTGTAAGATAATATGCGAT 57.236 29.630 0.00 0.00 0.00 4.58
2416 2860 9.764363 ATCTGAAAAGTGTAAGATAATATGCGA 57.236 29.630 0.00 0.00 0.00 5.10
2417 2861 9.803130 CATCTGAAAAGTGTAAGATAATATGCG 57.197 33.333 0.00 0.00 0.00 4.73
2592 3044 9.712305 CCAACAATAATTATCGAGAACTAGGAT 57.288 33.333 0.00 0.00 0.00 3.24
2655 3107 0.250513 CCAGGAGCCACAGGTTCTAC 59.749 60.000 0.00 0.00 33.37 2.59
2664 3116 3.219281 TGTCTTAAAAACCAGGAGCCAC 58.781 45.455 0.00 0.00 0.00 5.01
2823 3287 8.386606 TGCGTGGCATATTTTGAATTTATTTTC 58.613 29.630 0.00 0.00 31.71 2.29
2844 3308 3.804688 TGTGACGAAATACATTTGCGTG 58.195 40.909 13.19 0.00 35.41 5.34
2845 3309 4.212425 TCTTGTGACGAAATACATTTGCGT 59.788 37.500 10.04 10.04 36.76 5.24
2847 3311 7.023575 AGATTCTTGTGACGAAATACATTTGC 58.976 34.615 0.00 0.00 0.00 3.68
2877 3341 5.779241 TTTCAATGATCTGGGAAGTACCT 57.221 39.130 0.00 0.00 38.98 3.08
2923 3387 6.930667 TTCCTGGTTTAAACACTACAGAAC 57.069 37.500 19.57 0.15 0.00 3.01
2927 3391 6.642707 CCAATTCCTGGTTTAAACACTACA 57.357 37.500 19.57 7.62 40.78 2.74
3126 3595 4.202151 ACTTGTGCCTTCTGAAAAACATCC 60.202 41.667 0.00 0.00 0.00 3.51
3214 3683 6.878389 TGCACAACTGATATACTGTTTCATCA 59.122 34.615 0.00 0.00 38.31 3.07
3289 3758 5.012239 ACAGTTGCATACTCATCAACCAAT 58.988 37.500 0.00 0.00 40.51 3.16
3418 3887 1.909700 TGAAACCCTCAGCATCCAAC 58.090 50.000 0.00 0.00 0.00 3.77
3521 3992 8.160342 CAGTCACATAACAAAGACGTAATGTAC 58.840 37.037 0.00 0.00 36.18 2.90
3606 4099 5.354234 TCGTGGATTTGAATCTAAAGCTTCC 59.646 40.000 0.00 0.00 35.73 3.46
3651 4144 2.761208 AGTAGCGTTATTGTCAGCTCCT 59.239 45.455 0.00 0.00 40.73 3.69
3729 4223 2.930826 AGCTTCAGAACGAAAAGGGA 57.069 45.000 0.00 0.00 31.71 4.20
3783 4280 2.812591 CTCATCTGCTGCAGTTTCAAGT 59.187 45.455 27.24 5.41 32.61 3.16
3786 4283 1.817357 CCTCATCTGCTGCAGTTTCA 58.183 50.000 27.24 10.28 32.61 2.69
4206 5009 9.490379 GAAATTACTCGGGTATTGATAAGACAT 57.510 33.333 0.00 0.00 0.00 3.06
4260 5067 4.032960 TGAAATGGCTACCAACTGATGT 57.967 40.909 0.00 0.00 36.95 3.06
4313 5120 3.055819 AGTCAGAGTGCACAAATCCGTAT 60.056 43.478 21.04 0.00 0.00 3.06
4318 5125 1.875514 TGCAGTCAGAGTGCACAAATC 59.124 47.619 26.34 8.13 46.61 2.17
4482 5289 2.536761 TAGCTAACGTTGGTGCTGTT 57.463 45.000 24.98 10.16 37.02 3.16
4494 5301 8.773404 TGGTCAACTTCTTAAGATTAGCTAAC 57.227 34.615 8.70 3.23 0.00 2.34
4536 5343 6.258507 ACAAGCAGGAATACAAAAGCAAAAAG 59.741 34.615 0.00 0.00 0.00 2.27
4562 5384 5.481473 TCAGCCTCCATTTTTAGCTTCAAAT 59.519 36.000 0.00 0.00 0.00 2.32
4668 5497 7.542025 TCGAACTAGTAACCTCAAGGATTAAC 58.458 38.462 2.30 0.00 38.94 2.01
4736 5566 1.272490 TCACTCGCTTCGACCTCAAAT 59.728 47.619 0.00 0.00 0.00 2.32
4746 5576 3.498397 TGGTTCAGAATTTCACTCGCTTC 59.502 43.478 0.00 0.00 0.00 3.86
4770 5600 5.170748 GTGGATCAAAGTTATGGCTTTTGG 58.829 41.667 0.00 0.00 36.64 3.28
4779 5609 7.506938 CCATTCATAAGGGTGGATCAAAGTTAT 59.493 37.037 0.00 0.00 33.53 1.89
4780 5610 6.833416 CCATTCATAAGGGTGGATCAAAGTTA 59.167 38.462 0.00 0.00 33.53 2.24
4784 5614 5.205517 ACCATTCATAAGGGTGGATCAAA 57.794 39.130 0.00 0.00 45.19 2.69
4791 5621 7.041098 GCTTACTCATAACCATTCATAAGGGTG 60.041 40.741 0.00 0.00 46.41 4.61
4793 5623 7.227156 AGCTTACTCATAACCATTCATAAGGG 58.773 38.462 0.00 0.00 38.57 3.95
4816 5646 6.823689 TGACCTCAAGGATCAGTTATTTAAGC 59.176 38.462 2.30 0.00 38.94 3.09
4822 5652 6.268847 GGATAGTGACCTCAAGGATCAGTTAT 59.731 42.308 2.30 4.79 38.94 1.89
4937 6821 3.689649 ACCAAGACGAGCCAAAATGATAC 59.310 43.478 0.00 0.00 0.00 2.24
4960 6848 6.322201 TGCTTCAGAATTTCACTCTCCTTTTT 59.678 34.615 0.00 0.00 0.00 1.94
4992 6884 4.956085 AGGCCAAAAAGGAAACAATGTAC 58.044 39.130 5.01 0.00 41.22 2.90
5013 6905 1.738099 CTCGCCGGACACCTGAAAG 60.738 63.158 5.05 0.00 0.00 2.62
5197 7089 0.905337 ACCTGACCTAGCGCTTCCTT 60.905 55.000 18.68 0.00 0.00 3.36
5198 7090 1.305381 ACCTGACCTAGCGCTTCCT 60.305 57.895 18.68 0.00 0.00 3.36
5199 7091 1.142097 GACCTGACCTAGCGCTTCC 59.858 63.158 18.68 2.89 0.00 3.46
5200 7092 0.246635 TTGACCTGACCTAGCGCTTC 59.753 55.000 18.68 8.18 0.00 3.86
5320 7213 3.466712 TGTACTAGAACGAGACTTGCG 57.533 47.619 0.00 0.00 0.00 4.85
5356 7249 9.678260 ACTCGGTAAAGAGAAAGAACTAGTATA 57.322 33.333 0.00 0.00 40.57 1.47
5357 7250 8.578448 ACTCGGTAAAGAGAAAGAACTAGTAT 57.422 34.615 0.00 0.00 40.57 2.12
5398 7299 0.830648 CCCAGCAATCGTAAGGGAGA 59.169 55.000 0.00 0.00 42.25 3.71
5399 7300 0.179045 CCCCAGCAATCGTAAGGGAG 60.179 60.000 0.00 0.00 42.25 4.30
5400 7301 0.619255 TCCCCAGCAATCGTAAGGGA 60.619 55.000 0.00 0.00 42.25 4.20
5406 7307 0.400213 TTCAAGTCCCCAGCAATCGT 59.600 50.000 0.00 0.00 0.00 3.73
5415 7316 3.496331 TCCAGTGAAAATTCAAGTCCCC 58.504 45.455 0.00 0.00 39.21 4.81
5447 7658 5.296283 CCAGTGAAAATGAATGGTGCAAAAA 59.704 36.000 0.00 0.00 30.28 1.94
5448 7659 4.815308 CCAGTGAAAATGAATGGTGCAAAA 59.185 37.500 0.00 0.00 30.28 2.44
5449 7660 4.100653 TCCAGTGAAAATGAATGGTGCAAA 59.899 37.500 0.00 0.00 30.28 3.68
5450 7661 3.640498 TCCAGTGAAAATGAATGGTGCAA 59.360 39.130 0.00 0.00 30.28 4.08
5453 7664 5.473162 TGTACTCCAGTGAAAATGAATGGTG 59.527 40.000 0.00 0.00 30.28 4.17
5455 7666 6.207417 ACTTGTACTCCAGTGAAAATGAATGG 59.793 38.462 0.00 0.00 30.28 3.16
5469 7680 1.813862 GCCAACTGCACTTGTACTCCA 60.814 52.381 5.52 0.00 40.77 3.86
5538 7846 3.614150 GCTTAACTCACACTCATCGTCCA 60.614 47.826 0.00 0.00 0.00 4.02
5539 7847 2.924290 GCTTAACTCACACTCATCGTCC 59.076 50.000 0.00 0.00 0.00 4.79
5553 7861 1.303309 GATCATGCGGCTGCTTAACT 58.697 50.000 20.27 0.00 43.34 2.24
5588 7896 2.237893 TCTTTAAATCACCTCCCCCGAC 59.762 50.000 0.00 0.00 0.00 4.79
5652 7978 2.997899 GCATTACTGCCTGCGATCT 58.002 52.632 0.00 0.00 42.88 2.75
5752 8082 1.169661 CGTTTGCCACCCAGCACTTA 61.170 55.000 0.00 0.00 43.97 2.24
5832 8176 2.031012 TCGCCTCTGCAACCACAG 59.969 61.111 0.00 0.00 39.12 3.66
5873 8217 1.945394 CTAGTAATTGCTGCCTGCCAG 59.055 52.381 6.28 0.00 44.67 4.85
5874 8218 2.018644 GCTAGTAATTGCTGCCTGCCA 61.019 52.381 6.28 0.00 42.00 4.92
5902 8260 3.237741 GGGAGGGGAGCGGATGAG 61.238 72.222 0.00 0.00 0.00 2.90
5903 8261 4.088351 TGGGAGGGGAGCGGATGA 62.088 66.667 0.00 0.00 0.00 2.92
5904 8262 3.866582 GTGGGAGGGGAGCGGATG 61.867 72.222 0.00 0.00 0.00 3.51
5914 8272 2.031157 GTGATTTGTTTCACGTGGGAGG 60.031 50.000 17.00 0.00 36.93 4.30
5963 8321 6.973474 ACGAAGTTGATATTACTGCTGTACTC 59.027 38.462 2.52 2.30 37.78 2.59
6006 8369 1.112113 ATCTTGCGACGGATGGTACT 58.888 50.000 0.00 0.00 0.00 2.73
6016 8379 2.924290 GGAGTACAGTGAATCTTGCGAC 59.076 50.000 0.00 0.00 0.00 5.19
6018 8381 2.668457 GTGGAGTACAGTGAATCTTGCG 59.332 50.000 0.00 0.00 0.00 4.85
6036 8399 2.967076 ACAGTTGCAGCGACGTGG 60.967 61.111 7.16 0.00 0.00 4.94
6049 8412 1.346068 GACTTTGAGCCTCTCCACAGT 59.654 52.381 0.00 0.00 0.00 3.55
6145 8517 0.971386 CCATGCCTAATGAATGGGCC 59.029 55.000 0.00 0.00 44.71 5.80
6146 8518 0.319405 GCCATGCCTAATGAATGGGC 59.681 55.000 1.47 0.00 45.45 5.36
6147 8519 2.005370 AGCCATGCCTAATGAATGGG 57.995 50.000 1.47 0.00 41.06 4.00
6148 8520 2.960384 TCAAGCCATGCCTAATGAATGG 59.040 45.455 0.00 0.00 43.18 3.16
6166 8539 2.502142 AGCAGTGATGAGGCATTCAA 57.498 45.000 0.00 0.00 39.77 2.69
6175 8548 3.126073 GCGTGATGATAAGCAGTGATGA 58.874 45.455 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.