Multiple sequence alignment - TraesCS7D01G407900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G407900 chr7D 100.000 3009 0 0 1 3009 525733318 525736326 0.000000e+00 5557
1 TraesCS7D01G407900 chr1D 94.361 2607 127 8 422 3009 42897255 42894650 0.000000e+00 3982
2 TraesCS7D01G407900 chr1D 94.955 1665 68 5 1352 3009 7181412 7183067 0.000000e+00 2595
3 TraesCS7D01G407900 chr1D 88.930 1084 84 20 1954 3008 392708462 392707386 0.000000e+00 1304
4 TraesCS7D01G407900 chr1D 93.750 336 21 0 2674 3009 4306600 4306265 3.460000e-139 505
5 TraesCS7D01G407900 chr5A 93.820 2605 128 8 422 3009 634624170 634626758 0.000000e+00 3888
6 TraesCS7D01G407900 chr5A 93.167 2605 135 15 422 3009 573012213 573009635 0.000000e+00 3784
7 TraesCS7D01G407900 chr5A 94.118 782 37 2 2237 3009 552242117 552241336 0.000000e+00 1181
8 TraesCS7D01G407900 chr1A 93.316 2618 126 11 422 3009 572001395 571998797 0.000000e+00 3819
9 TraesCS7D01G407900 chr6A 93.300 2612 134 12 422 3009 116690039 116692633 0.000000e+00 3816
10 TraesCS7D01G407900 chr6A 90.049 613 55 4 2400 3009 117535456 117536065 0.000000e+00 789
11 TraesCS7D01G407900 chr3B 91.980 2631 157 20 422 3009 726424353 726426972 0.000000e+00 3640
12 TraesCS7D01G407900 chr3B 92.030 1744 106 16 422 2146 13510174 13511903 0.000000e+00 2420
13 TraesCS7D01G407900 chr1B 91.851 2626 138 22 422 3009 539849941 539847354 0.000000e+00 3594
14 TraesCS7D01G407900 chr5B 91.899 2617 132 22 422 3009 418362482 418359917 0.000000e+00 3585
15 TraesCS7D01G407900 chr4D 94.351 2372 76 14 636 2997 488848778 488851101 0.000000e+00 3585
16 TraesCS7D01G407900 chr4D 95.057 1659 62 6 1352 3009 108843144 108844783 0.000000e+00 2591
17 TraesCS7D01G407900 chr4D 81.516 541 79 12 2472 3008 392722743 392722220 2.770000e-115 425
18 TraesCS7D01G407900 chr4D 79.773 529 72 15 2472 2997 428642862 428643358 4.770000e-93 351
19 TraesCS7D01G407900 chr4D 99.160 119 1 0 1 119 468945378 468945260 6.530000e-52 215
20 TraesCS7D01G407900 chr4D 96.774 124 4 0 1 124 139012025 139012148 1.090000e-49 207
21 TraesCS7D01G407900 chr4A 89.120 2592 211 25 422 3009 85532113 85529589 0.000000e+00 3158
22 TraesCS7D01G407900 chr2B 94.682 1824 83 6 422 2238 80552659 80550843 0.000000e+00 2819
23 TraesCS7D01G407900 chr2B 93.451 794 48 2 2219 3009 80549106 80548314 0.000000e+00 1175
24 TraesCS7D01G407900 chr3D 95.479 1659 62 6 1354 3009 594954002 594952354 0.000000e+00 2636
25 TraesCS7D01G407900 chr3D 99.160 119 1 0 1 119 524602573 524602455 6.530000e-52 215
26 TraesCS7D01G407900 chr6D 92.145 1795 115 10 1221 3009 45727752 45729526 0.000000e+00 2510
27 TraesCS7D01G407900 chr6D 99.160 119 1 0 1 119 156586183 156586065 6.530000e-52 215
28 TraesCS7D01G407900 chr6D 99.160 119 1 0 1 119 333441799 333441917 6.530000e-52 215
29 TraesCS7D01G407900 chr6D 97.581 124 3 0 1 124 422956545 422956668 2.350000e-51 213
30 TraesCS7D01G407900 chr2A 91.996 987 52 3 2050 3009 773325948 773324962 0.000000e+00 1360
31 TraesCS7D01G407900 chr7A 95.252 695 30 1 2318 3009 689938334 689939028 0.000000e+00 1098
32 TraesCS7D01G407900 chr7B 92.459 305 19 2 120 420 562391562 562391866 1.660000e-117 433
33 TraesCS7D01G407900 chr2D 99.160 119 1 0 1 119 793516 793634 6.530000e-52 215
34 TraesCS7D01G407900 chr2D 97.581 124 3 0 1 124 384814411 384814288 2.350000e-51 213
35 TraesCS7D01G407900 chr6B 94.697 132 5 2 1 131 226332128 226331998 1.410000e-48 204


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G407900 chr7D 525733318 525736326 3008 False 5557 5557 100.0000 1 3009 1 chr7D.!!$F1 3008
1 TraesCS7D01G407900 chr1D 42894650 42897255 2605 True 3982 3982 94.3610 422 3009 1 chr1D.!!$R2 2587
2 TraesCS7D01G407900 chr1D 7181412 7183067 1655 False 2595 2595 94.9550 1352 3009 1 chr1D.!!$F1 1657
3 TraesCS7D01G407900 chr1D 392707386 392708462 1076 True 1304 1304 88.9300 1954 3008 1 chr1D.!!$R3 1054
4 TraesCS7D01G407900 chr5A 634624170 634626758 2588 False 3888 3888 93.8200 422 3009 1 chr5A.!!$F1 2587
5 TraesCS7D01G407900 chr5A 573009635 573012213 2578 True 3784 3784 93.1670 422 3009 1 chr5A.!!$R2 2587
6 TraesCS7D01G407900 chr5A 552241336 552242117 781 True 1181 1181 94.1180 2237 3009 1 chr5A.!!$R1 772
7 TraesCS7D01G407900 chr1A 571998797 572001395 2598 True 3819 3819 93.3160 422 3009 1 chr1A.!!$R1 2587
8 TraesCS7D01G407900 chr6A 116690039 116692633 2594 False 3816 3816 93.3000 422 3009 1 chr6A.!!$F1 2587
9 TraesCS7D01G407900 chr6A 117535456 117536065 609 False 789 789 90.0490 2400 3009 1 chr6A.!!$F2 609
10 TraesCS7D01G407900 chr3B 726424353 726426972 2619 False 3640 3640 91.9800 422 3009 1 chr3B.!!$F2 2587
11 TraesCS7D01G407900 chr3B 13510174 13511903 1729 False 2420 2420 92.0300 422 2146 1 chr3B.!!$F1 1724
12 TraesCS7D01G407900 chr1B 539847354 539849941 2587 True 3594 3594 91.8510 422 3009 1 chr1B.!!$R1 2587
13 TraesCS7D01G407900 chr5B 418359917 418362482 2565 True 3585 3585 91.8990 422 3009 1 chr5B.!!$R1 2587
14 TraesCS7D01G407900 chr4D 488848778 488851101 2323 False 3585 3585 94.3510 636 2997 1 chr4D.!!$F4 2361
15 TraesCS7D01G407900 chr4D 108843144 108844783 1639 False 2591 2591 95.0570 1352 3009 1 chr4D.!!$F1 1657
16 TraesCS7D01G407900 chr4D 392722220 392722743 523 True 425 425 81.5160 2472 3008 1 chr4D.!!$R1 536
17 TraesCS7D01G407900 chr4A 85529589 85532113 2524 True 3158 3158 89.1200 422 3009 1 chr4A.!!$R1 2587
18 TraesCS7D01G407900 chr2B 80548314 80552659 4345 True 1997 2819 94.0665 422 3009 2 chr2B.!!$R1 2587
19 TraesCS7D01G407900 chr3D 594952354 594954002 1648 True 2636 2636 95.4790 1354 3009 1 chr3D.!!$R2 1655
20 TraesCS7D01G407900 chr6D 45727752 45729526 1774 False 2510 2510 92.1450 1221 3009 1 chr6D.!!$F1 1788
21 TraesCS7D01G407900 chr2A 773324962 773325948 986 True 1360 1360 91.9960 2050 3009 1 chr2A.!!$R1 959
22 TraesCS7D01G407900 chr7A 689938334 689939028 694 False 1098 1098 95.2520 2318 3009 1 chr7A.!!$F1 691

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
291 292 0.030235 CGCGGTCGTATCCTTCATCA 59.970 55.0 0.00 0.0 0.0 3.07 F
345 346 0.100682 TATGCAGCTCGAGTTCGTCC 59.899 55.0 15.13 0.0 40.8 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1945 1997 2.345760 GCACCCATGACCAGCCTTG 61.346 63.158 0.0 0.0 0.00 3.61 R
2120 2182 6.256053 ACCAAAATGATCTGAAACCATAGGT 58.744 36.000 0.0 0.0 37.65 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 8.902540 TGTTTTAGAGTTGTGTTGTGATATCT 57.097 30.769 3.98 0.00 0.00 1.98
40 41 9.337396 TGTTTTAGAGTTGTGTTGTGATATCTT 57.663 29.630 3.98 0.00 0.00 2.40
41 42 9.813080 GTTTTAGAGTTGTGTTGTGATATCTTC 57.187 33.333 3.98 0.00 0.00 2.87
42 43 8.547967 TTTAGAGTTGTGTTGTGATATCTTCC 57.452 34.615 3.98 0.00 0.00 3.46
43 44 5.491982 AGAGTTGTGTTGTGATATCTTCCC 58.508 41.667 3.98 0.00 0.00 3.97
44 45 4.253685 AGTTGTGTTGTGATATCTTCCCG 58.746 43.478 3.98 0.00 0.00 5.14
45 46 3.973206 TGTGTTGTGATATCTTCCCGT 57.027 42.857 3.98 0.00 0.00 5.28
46 47 3.595173 TGTGTTGTGATATCTTCCCGTG 58.405 45.455 3.98 0.00 0.00 4.94
47 48 3.259625 TGTGTTGTGATATCTTCCCGTGA 59.740 43.478 3.98 0.00 0.00 4.35
48 49 3.865745 GTGTTGTGATATCTTCCCGTGAG 59.134 47.826 3.98 0.00 0.00 3.51
49 50 3.513912 TGTTGTGATATCTTCCCGTGAGT 59.486 43.478 3.98 0.00 0.00 3.41
50 51 4.113354 GTTGTGATATCTTCCCGTGAGTC 58.887 47.826 3.98 0.00 0.00 3.36
51 52 2.693591 TGTGATATCTTCCCGTGAGTCC 59.306 50.000 3.98 0.00 0.00 3.85
52 53 2.959707 GTGATATCTTCCCGTGAGTCCT 59.040 50.000 3.98 0.00 0.00 3.85
53 54 3.385111 GTGATATCTTCCCGTGAGTCCTT 59.615 47.826 3.98 0.00 0.00 3.36
54 55 3.384789 TGATATCTTCCCGTGAGTCCTTG 59.615 47.826 3.98 0.00 0.00 3.61
55 56 1.938585 ATCTTCCCGTGAGTCCTTGA 58.061 50.000 0.00 0.00 0.00 3.02
56 57 1.938585 TCTTCCCGTGAGTCCTTGAT 58.061 50.000 0.00 0.00 0.00 2.57
57 58 1.825474 TCTTCCCGTGAGTCCTTGATC 59.175 52.381 0.00 0.00 0.00 2.92
58 59 1.827969 CTTCCCGTGAGTCCTTGATCT 59.172 52.381 0.00 0.00 0.00 2.75
59 60 1.938585 TCCCGTGAGTCCTTGATCTT 58.061 50.000 0.00 0.00 0.00 2.40
60 61 1.550524 TCCCGTGAGTCCTTGATCTTG 59.449 52.381 0.00 0.00 0.00 3.02
61 62 1.550524 CCCGTGAGTCCTTGATCTTGA 59.449 52.381 0.00 0.00 0.00 3.02
62 63 2.169352 CCCGTGAGTCCTTGATCTTGAT 59.831 50.000 0.00 0.00 0.00 2.57
63 64 3.452474 CCGTGAGTCCTTGATCTTGATC 58.548 50.000 3.82 3.82 0.00 2.92
64 65 3.111838 CGTGAGTCCTTGATCTTGATCG 58.888 50.000 6.19 0.00 0.00 3.69
65 66 3.428180 CGTGAGTCCTTGATCTTGATCGT 60.428 47.826 6.19 0.00 0.00 3.73
66 67 4.201920 CGTGAGTCCTTGATCTTGATCGTA 60.202 45.833 6.19 0.00 0.00 3.43
67 68 5.038033 GTGAGTCCTTGATCTTGATCGTAC 58.962 45.833 6.19 2.53 0.00 3.67
68 69 4.705023 TGAGTCCTTGATCTTGATCGTACA 59.295 41.667 6.19 0.00 0.00 2.90
69 70 5.000012 AGTCCTTGATCTTGATCGTACAC 58.000 43.478 6.19 1.73 0.00 2.90
70 71 4.462834 AGTCCTTGATCTTGATCGTACACA 59.537 41.667 6.19 0.00 0.00 3.72
71 72 5.127845 AGTCCTTGATCTTGATCGTACACAT 59.872 40.000 6.19 0.00 0.00 3.21
72 73 5.812642 GTCCTTGATCTTGATCGTACACATT 59.187 40.000 6.19 0.00 0.00 2.71
73 74 6.313905 GTCCTTGATCTTGATCGTACACATTT 59.686 38.462 6.19 0.00 0.00 2.32
74 75 6.313658 TCCTTGATCTTGATCGTACACATTTG 59.686 38.462 6.19 0.00 0.00 2.32
75 76 5.469373 TGATCTTGATCGTACACATTTGC 57.531 39.130 6.19 0.00 0.00 3.68
76 77 3.989705 TCTTGATCGTACACATTTGCG 57.010 42.857 0.00 0.00 0.00 4.85
77 78 3.322369 TCTTGATCGTACACATTTGCGT 58.678 40.909 0.00 0.00 0.00 5.24
78 79 3.122780 TCTTGATCGTACACATTTGCGTG 59.877 43.478 0.00 0.00 42.81 5.34
79 80 1.127766 TGATCGTACACATTTGCGTGC 59.872 47.619 0.00 0.00 40.73 5.34
80 81 1.127766 GATCGTACACATTTGCGTGCA 59.872 47.619 0.00 0.00 40.73 4.57
81 82 1.152510 TCGTACACATTTGCGTGCAT 58.847 45.000 0.00 0.00 40.73 3.96
82 83 1.136113 TCGTACACATTTGCGTGCATG 60.136 47.619 0.09 0.09 40.73 4.06
83 84 1.136113 CGTACACATTTGCGTGCATGA 60.136 47.619 10.93 0.00 40.73 3.07
84 85 2.476018 CGTACACATTTGCGTGCATGAT 60.476 45.455 10.93 0.00 40.73 2.45
85 86 2.728690 ACACATTTGCGTGCATGATT 57.271 40.000 10.93 0.00 40.73 2.57
86 87 3.846423 ACACATTTGCGTGCATGATTA 57.154 38.095 10.93 0.00 40.73 1.75
87 88 3.761657 ACACATTTGCGTGCATGATTAG 58.238 40.909 10.93 0.00 40.73 1.73
88 89 3.191162 ACACATTTGCGTGCATGATTAGT 59.809 39.130 10.93 0.00 40.73 2.24
89 90 3.544682 CACATTTGCGTGCATGATTAGTG 59.455 43.478 10.93 7.27 0.00 2.74
90 91 3.191162 ACATTTGCGTGCATGATTAGTGT 59.809 39.130 10.93 4.47 0.00 3.55
91 92 4.394610 ACATTTGCGTGCATGATTAGTGTA 59.605 37.500 10.93 0.00 0.00 2.90
92 93 4.335082 TTTGCGTGCATGATTAGTGTAC 57.665 40.909 10.93 0.00 0.00 2.90
95 96 2.536365 CGTGCATGATTAGTGTACGGT 58.464 47.619 0.00 0.00 46.91 4.83
96 97 2.534349 CGTGCATGATTAGTGTACGGTC 59.466 50.000 0.00 0.00 46.91 4.79
97 98 3.517602 GTGCATGATTAGTGTACGGTCA 58.482 45.455 0.00 0.00 0.00 4.02
98 99 3.930229 GTGCATGATTAGTGTACGGTCAA 59.070 43.478 0.00 0.00 0.00 3.18
99 100 4.390603 GTGCATGATTAGTGTACGGTCAAA 59.609 41.667 0.00 0.00 0.00 2.69
100 101 5.064707 GTGCATGATTAGTGTACGGTCAAAT 59.935 40.000 0.00 0.00 0.00 2.32
101 102 5.293324 TGCATGATTAGTGTACGGTCAAATC 59.707 40.000 0.00 0.00 0.00 2.17
102 103 5.556382 GCATGATTAGTGTACGGTCAAATCG 60.556 44.000 0.00 0.00 0.00 3.34
103 104 4.426416 TGATTAGTGTACGGTCAAATCGG 58.574 43.478 0.00 0.00 0.00 4.18
104 105 2.945447 TAGTGTACGGTCAAATCGGG 57.055 50.000 0.00 0.00 0.00 5.14
105 106 1.259609 AGTGTACGGTCAAATCGGGA 58.740 50.000 0.00 0.00 0.00 5.14
106 107 1.203994 AGTGTACGGTCAAATCGGGAG 59.796 52.381 0.00 0.00 0.00 4.30
107 108 0.108520 TGTACGGTCAAATCGGGAGC 60.109 55.000 0.00 0.00 0.00 4.70
110 111 3.795638 GGTCAAATCGGGAGCGTC 58.204 61.111 0.00 0.00 0.00 5.19
111 112 1.079405 GGTCAAATCGGGAGCGTCA 60.079 57.895 0.00 0.00 0.00 4.35
112 113 1.359459 GGTCAAATCGGGAGCGTCAC 61.359 60.000 0.00 0.00 0.00 3.67
113 114 0.669318 GTCAAATCGGGAGCGTCACA 60.669 55.000 0.00 0.00 0.00 3.58
114 115 0.034198 TCAAATCGGGAGCGTCACAA 59.966 50.000 0.00 0.00 0.00 3.33
115 116 0.443869 CAAATCGGGAGCGTCACAAG 59.556 55.000 0.00 0.00 0.00 3.16
116 117 0.034896 AAATCGGGAGCGTCACAAGT 59.965 50.000 0.00 0.00 0.00 3.16
117 118 0.034896 AATCGGGAGCGTCACAAGTT 59.965 50.000 0.00 0.00 0.00 2.66
118 119 0.670546 ATCGGGAGCGTCACAAGTTG 60.671 55.000 0.00 0.00 0.00 3.16
119 120 2.946762 GGGAGCGTCACAAGTTGC 59.053 61.111 1.81 0.00 0.00 4.17
120 121 1.891919 GGGAGCGTCACAAGTTGCA 60.892 57.895 1.81 0.00 0.00 4.08
121 122 1.444119 GGGAGCGTCACAAGTTGCAA 61.444 55.000 1.81 0.00 0.00 4.08
122 123 0.593128 GGAGCGTCACAAGTTGCAAT 59.407 50.000 0.59 0.00 0.00 3.56
123 124 1.400242 GGAGCGTCACAAGTTGCAATC 60.400 52.381 0.59 0.00 0.00 2.67
124 125 0.593128 AGCGTCACAAGTTGCAATCC 59.407 50.000 0.59 0.00 0.00 3.01
125 126 0.387239 GCGTCACAAGTTGCAATCCC 60.387 55.000 0.59 0.00 0.00 3.85
126 127 0.240945 CGTCACAAGTTGCAATCCCC 59.759 55.000 0.59 0.00 0.00 4.81
127 128 1.620822 GTCACAAGTTGCAATCCCCT 58.379 50.000 0.59 0.00 0.00 4.79
128 129 2.790433 GTCACAAGTTGCAATCCCCTA 58.210 47.619 0.59 0.00 0.00 3.53
129 130 3.356290 GTCACAAGTTGCAATCCCCTAT 58.644 45.455 0.59 0.00 0.00 2.57
130 131 3.129287 GTCACAAGTTGCAATCCCCTATG 59.871 47.826 0.59 0.00 0.00 2.23
131 132 3.091545 CACAAGTTGCAATCCCCTATGT 58.908 45.455 0.59 0.32 0.00 2.29
132 133 3.129287 CACAAGTTGCAATCCCCTATGTC 59.871 47.826 0.59 0.00 0.00 3.06
133 134 2.689983 CAAGTTGCAATCCCCTATGTCC 59.310 50.000 0.59 0.00 0.00 4.02
134 135 1.215423 AGTTGCAATCCCCTATGTCCC 59.785 52.381 0.59 0.00 0.00 4.46
135 136 1.215423 GTTGCAATCCCCTATGTCCCT 59.785 52.381 0.59 0.00 0.00 4.20
136 137 1.607225 TGCAATCCCCTATGTCCCTT 58.393 50.000 0.00 0.00 0.00 3.95
137 138 1.494721 TGCAATCCCCTATGTCCCTTC 59.505 52.381 0.00 0.00 0.00 3.46
138 139 1.494721 GCAATCCCCTATGTCCCTTCA 59.505 52.381 0.00 0.00 0.00 3.02
139 140 2.749800 GCAATCCCCTATGTCCCTTCAC 60.750 54.545 0.00 0.00 0.00 3.18
140 141 2.780010 CAATCCCCTATGTCCCTTCACT 59.220 50.000 0.00 0.00 0.00 3.41
141 142 2.661176 TCCCCTATGTCCCTTCACTT 57.339 50.000 0.00 0.00 0.00 3.16
142 143 2.478292 TCCCCTATGTCCCTTCACTTC 58.522 52.381 0.00 0.00 0.00 3.01
143 144 1.490910 CCCCTATGTCCCTTCACTTCC 59.509 57.143 0.00 0.00 0.00 3.46
144 145 2.482494 CCCTATGTCCCTTCACTTCCT 58.518 52.381 0.00 0.00 0.00 3.36
145 146 2.436173 CCCTATGTCCCTTCACTTCCTC 59.564 54.545 0.00 0.00 0.00 3.71
146 147 2.436173 CCTATGTCCCTTCACTTCCTCC 59.564 54.545 0.00 0.00 0.00 4.30
147 148 0.905357 ATGTCCCTTCACTTCCTCCG 59.095 55.000 0.00 0.00 0.00 4.63
148 149 0.471211 TGTCCCTTCACTTCCTCCGT 60.471 55.000 0.00 0.00 0.00 4.69
149 150 0.246910 GTCCCTTCACTTCCTCCGTC 59.753 60.000 0.00 0.00 0.00 4.79
150 151 0.178944 TCCCTTCACTTCCTCCGTCA 60.179 55.000 0.00 0.00 0.00 4.35
151 152 0.037232 CCCTTCACTTCCTCCGTCAC 60.037 60.000 0.00 0.00 0.00 3.67
152 153 0.388649 CCTTCACTTCCTCCGTCACG 60.389 60.000 0.00 0.00 0.00 4.35
153 154 1.006571 TTCACTTCCTCCGTCACGC 60.007 57.895 0.00 0.00 0.00 5.34
154 155 1.740332 TTCACTTCCTCCGTCACGCA 61.740 55.000 0.00 0.00 0.00 5.24
155 156 1.300620 CACTTCCTCCGTCACGCAA 60.301 57.895 0.00 0.00 0.00 4.85
157 158 1.289066 CTTCCTCCGTCACGCAAGA 59.711 57.895 0.00 0.00 43.62 3.02
158 159 0.734253 CTTCCTCCGTCACGCAAGAG 60.734 60.000 0.00 0.00 43.62 2.85
159 160 1.461091 TTCCTCCGTCACGCAAGAGT 61.461 55.000 0.00 0.00 43.62 3.24
160 161 1.444553 CCTCCGTCACGCAAGAGTC 60.445 63.158 0.00 0.00 43.62 3.36
161 162 1.285950 CTCCGTCACGCAAGAGTCA 59.714 57.895 0.00 0.00 43.62 3.41
162 163 0.318699 CTCCGTCACGCAAGAGTCAA 60.319 55.000 0.00 0.00 43.62 3.18
163 164 0.318699 TCCGTCACGCAAGAGTCAAG 60.319 55.000 0.00 0.00 43.62 3.02
164 165 0.318699 CCGTCACGCAAGAGTCAAGA 60.319 55.000 0.00 0.00 43.62 3.02
165 166 0.778815 CGTCACGCAAGAGTCAAGAC 59.221 55.000 0.00 0.00 43.62 3.01
166 167 1.140816 GTCACGCAAGAGTCAAGACC 58.859 55.000 0.00 0.00 43.62 3.85
167 168 0.750249 TCACGCAAGAGTCAAGACCA 59.250 50.000 0.00 0.00 43.62 4.02
168 169 1.344438 TCACGCAAGAGTCAAGACCAT 59.656 47.619 0.00 0.00 43.62 3.55
169 170 1.462283 CACGCAAGAGTCAAGACCATG 59.538 52.381 0.00 0.00 43.62 3.66
170 171 1.081892 CGCAAGAGTCAAGACCATGG 58.918 55.000 11.19 11.19 43.02 3.66
171 172 0.807496 GCAAGAGTCAAGACCATGGC 59.193 55.000 13.04 4.70 0.00 4.40
172 173 1.081892 CAAGAGTCAAGACCATGGCG 58.918 55.000 13.04 0.00 0.00 5.69
173 174 0.036010 AAGAGTCAAGACCATGGCGG 60.036 55.000 13.04 0.00 42.50 6.13
174 175 2.045926 AGTCAAGACCATGGCGGC 60.046 61.111 13.04 0.00 39.03 6.53
175 176 3.134127 GTCAAGACCATGGCGGCC 61.134 66.667 13.04 13.32 39.03 6.13
176 177 4.424711 TCAAGACCATGGCGGCCC 62.425 66.667 17.97 0.00 39.03 5.80
177 178 4.431131 CAAGACCATGGCGGCCCT 62.431 66.667 17.97 3.08 39.03 5.19
178 179 4.431131 AAGACCATGGCGGCCCTG 62.431 66.667 17.97 17.08 39.03 4.45
180 181 4.864334 GACCATGGCGGCCCTGAG 62.864 72.222 23.64 15.97 39.03 3.35
188 189 4.559063 CGGCCCTGAGCTCCATGG 62.559 72.222 12.15 4.97 43.05 3.66
191 192 3.790437 CCCTGAGCTCCATGGCGT 61.790 66.667 12.15 0.00 37.29 5.68
192 193 2.270205 CCTGAGCTCCATGGCGTT 59.730 61.111 12.15 0.00 37.29 4.84
193 194 1.817099 CCTGAGCTCCATGGCGTTC 60.817 63.158 12.15 11.33 37.29 3.95
194 195 1.220206 CTGAGCTCCATGGCGTTCT 59.780 57.895 17.97 7.25 37.29 3.01
195 196 0.392193 CTGAGCTCCATGGCGTTCTT 60.392 55.000 17.97 0.00 37.29 2.52
196 197 0.391661 TGAGCTCCATGGCGTTCTTC 60.392 55.000 17.97 5.67 37.29 2.87
197 198 0.107945 GAGCTCCATGGCGTTCTTCT 60.108 55.000 6.96 0.00 37.29 2.85
198 199 0.107945 AGCTCCATGGCGTTCTTCTC 60.108 55.000 6.96 0.00 37.29 2.87
199 200 1.092345 GCTCCATGGCGTTCTTCTCC 61.092 60.000 6.96 0.00 0.00 3.71
200 201 0.807667 CTCCATGGCGTTCTTCTCCG 60.808 60.000 6.96 0.00 0.00 4.63
201 202 1.079127 CCATGGCGTTCTTCTCCGT 60.079 57.895 0.00 0.00 0.00 4.69
202 203 1.084370 CCATGGCGTTCTTCTCCGTC 61.084 60.000 0.00 0.00 0.00 4.79
203 204 1.084370 CATGGCGTTCTTCTCCGTCC 61.084 60.000 0.00 0.00 0.00 4.79
204 205 1.541310 ATGGCGTTCTTCTCCGTCCA 61.541 55.000 0.00 0.00 35.72 4.02
205 206 1.218316 GGCGTTCTTCTCCGTCCAT 59.782 57.895 0.00 0.00 0.00 3.41
206 207 0.806492 GGCGTTCTTCTCCGTCCATC 60.806 60.000 0.00 0.00 0.00 3.51
207 208 0.806492 GCGTTCTTCTCCGTCCATCC 60.806 60.000 0.00 0.00 0.00 3.51
208 209 0.179108 CGTTCTTCTCCGTCCATCCC 60.179 60.000 0.00 0.00 0.00 3.85
209 210 0.178301 GTTCTTCTCCGTCCATCCCC 59.822 60.000 0.00 0.00 0.00 4.81
210 211 0.981277 TTCTTCTCCGTCCATCCCCC 60.981 60.000 0.00 0.00 0.00 5.40
211 212 1.383248 CTTCTCCGTCCATCCCCCT 60.383 63.158 0.00 0.00 0.00 4.79
212 213 1.689233 TTCTCCGTCCATCCCCCTG 60.689 63.158 0.00 0.00 0.00 4.45
213 214 3.866582 CTCCGTCCATCCCCCTGC 61.867 72.222 0.00 0.00 0.00 4.85
217 218 4.129148 GTCCATCCCCCTGCCCAC 62.129 72.222 0.00 0.00 0.00 4.61
220 221 4.447342 CATCCCCCTGCCCACCAC 62.447 72.222 0.00 0.00 0.00 4.16
226 227 4.033776 CCTGCCCACCACGACCAT 62.034 66.667 0.00 0.00 0.00 3.55
227 228 2.665089 CCTGCCCACCACGACCATA 61.665 63.158 0.00 0.00 0.00 2.74
228 229 1.153369 CTGCCCACCACGACCATAG 60.153 63.158 0.00 0.00 0.00 2.23
229 230 2.513897 GCCCACCACGACCATAGC 60.514 66.667 0.00 0.00 0.00 2.97
230 231 2.189521 CCCACCACGACCATAGCC 59.810 66.667 0.00 0.00 0.00 3.93
231 232 2.367202 CCCACCACGACCATAGCCT 61.367 63.158 0.00 0.00 0.00 4.58
232 233 1.144057 CCACCACGACCATAGCCTC 59.856 63.158 0.00 0.00 0.00 4.70
233 234 1.330655 CCACCACGACCATAGCCTCT 61.331 60.000 0.00 0.00 0.00 3.69
234 235 0.179100 CACCACGACCATAGCCTCTG 60.179 60.000 0.00 0.00 0.00 3.35
235 236 1.330655 ACCACGACCATAGCCTCTGG 61.331 60.000 0.00 0.00 39.80 3.86
236 237 1.043116 CCACGACCATAGCCTCTGGA 61.043 60.000 2.71 0.00 37.22 3.86
237 238 1.043816 CACGACCATAGCCTCTGGAT 58.956 55.000 2.71 0.00 37.22 3.41
238 239 1.043816 ACGACCATAGCCTCTGGATG 58.956 55.000 2.71 0.00 37.22 3.51
239 240 0.320247 CGACCATAGCCTCTGGATGC 60.320 60.000 2.71 0.00 37.22 3.91
240 241 0.761187 GACCATAGCCTCTGGATGCA 59.239 55.000 2.71 0.00 37.22 3.96
241 242 0.471617 ACCATAGCCTCTGGATGCAC 59.528 55.000 2.71 0.00 37.22 4.57
242 243 0.763652 CCATAGCCTCTGGATGCACT 59.236 55.000 0.00 0.00 35.70 4.40
243 244 1.973515 CCATAGCCTCTGGATGCACTA 59.026 52.381 0.00 0.00 35.70 2.74
244 245 2.028294 CCATAGCCTCTGGATGCACTAG 60.028 54.545 0.00 0.00 35.70 2.57
245 246 1.043816 TAGCCTCTGGATGCACTAGC 58.956 55.000 0.00 0.00 42.57 3.42
256 257 2.816958 CACTAGCAGCCGCCACAG 60.817 66.667 0.00 0.00 39.83 3.66
257 258 2.997315 ACTAGCAGCCGCCACAGA 60.997 61.111 0.00 0.00 39.83 3.41
258 259 2.510238 CTAGCAGCCGCCACAGAC 60.510 66.667 0.00 0.00 39.83 3.51
259 260 4.082523 TAGCAGCCGCCACAGACC 62.083 66.667 0.00 0.00 39.83 3.85
265 266 4.704833 CCGCCACAGACCCACCAG 62.705 72.222 0.00 0.00 0.00 4.00
267 268 3.958860 GCCACAGACCCACCAGCT 61.959 66.667 0.00 0.00 0.00 4.24
268 269 2.348998 CCACAGACCCACCAGCTC 59.651 66.667 0.00 0.00 0.00 4.09
269 270 2.348998 CACAGACCCACCAGCTCC 59.651 66.667 0.00 0.00 0.00 4.70
270 271 2.205462 ACAGACCCACCAGCTCCT 59.795 61.111 0.00 0.00 0.00 3.69
271 272 1.915769 ACAGACCCACCAGCTCCTC 60.916 63.158 0.00 0.00 0.00 3.71
272 273 2.284995 AGACCCACCAGCTCCTCC 60.285 66.667 0.00 0.00 0.00 4.30
273 274 3.775654 GACCCACCAGCTCCTCCG 61.776 72.222 0.00 0.00 0.00 4.63
281 282 4.790962 AGCTCCTCCGCGGTCGTA 62.791 66.667 27.15 4.17 34.40 3.43
282 283 3.593794 GCTCCTCCGCGGTCGTAT 61.594 66.667 27.15 0.00 0.00 3.06
283 284 2.638154 CTCCTCCGCGGTCGTATC 59.362 66.667 27.15 0.00 0.00 2.24
284 285 2.903855 TCCTCCGCGGTCGTATCC 60.904 66.667 27.15 0.00 0.00 2.59
285 286 2.905880 CCTCCGCGGTCGTATCCT 60.906 66.667 27.15 0.00 0.00 3.24
286 287 2.487532 CCTCCGCGGTCGTATCCTT 61.488 63.158 27.15 0.00 0.00 3.36
287 288 1.008767 CTCCGCGGTCGTATCCTTC 60.009 63.158 27.15 0.00 0.00 3.46
288 289 1.721664 CTCCGCGGTCGTATCCTTCA 61.722 60.000 27.15 0.00 0.00 3.02
289 290 1.105167 TCCGCGGTCGTATCCTTCAT 61.105 55.000 27.15 0.00 0.00 2.57
290 291 0.663568 CCGCGGTCGTATCCTTCATC 60.664 60.000 19.50 0.00 0.00 2.92
291 292 0.030235 CGCGGTCGTATCCTTCATCA 59.970 55.000 0.00 0.00 0.00 3.07
292 293 1.772182 GCGGTCGTATCCTTCATCAG 58.228 55.000 0.00 0.00 0.00 2.90
293 294 1.337071 GCGGTCGTATCCTTCATCAGA 59.663 52.381 0.00 0.00 0.00 3.27
294 295 2.029828 GCGGTCGTATCCTTCATCAGAT 60.030 50.000 0.00 0.00 0.00 2.90
295 296 3.569548 CGGTCGTATCCTTCATCAGATG 58.430 50.000 3.71 3.71 0.00 2.90
296 297 3.321497 GGTCGTATCCTTCATCAGATGC 58.679 50.000 5.41 0.00 0.00 3.91
297 298 3.006323 GGTCGTATCCTTCATCAGATGCT 59.994 47.826 5.41 0.00 0.00 3.79
298 299 4.233789 GTCGTATCCTTCATCAGATGCTC 58.766 47.826 5.41 0.00 0.00 4.26
299 300 3.256879 TCGTATCCTTCATCAGATGCTCC 59.743 47.826 5.41 0.00 0.00 4.70
300 301 3.006217 CGTATCCTTCATCAGATGCTCCA 59.994 47.826 5.41 0.00 0.00 3.86
301 302 3.773418 ATCCTTCATCAGATGCTCCAG 57.227 47.619 5.41 0.00 0.00 3.86
302 303 2.475155 TCCTTCATCAGATGCTCCAGT 58.525 47.619 5.41 0.00 0.00 4.00
303 304 2.169978 TCCTTCATCAGATGCTCCAGTG 59.830 50.000 5.41 0.00 0.00 3.66
304 305 2.093075 CCTTCATCAGATGCTCCAGTGT 60.093 50.000 5.41 0.00 0.00 3.55
305 306 2.685850 TCATCAGATGCTCCAGTGTG 57.314 50.000 5.41 0.00 0.00 3.82
306 307 1.904537 TCATCAGATGCTCCAGTGTGT 59.095 47.619 5.41 0.00 0.00 3.72
307 308 2.093816 TCATCAGATGCTCCAGTGTGTC 60.094 50.000 5.41 0.00 0.00 3.67
308 309 1.341080 TCAGATGCTCCAGTGTGTCA 58.659 50.000 0.00 0.00 0.00 3.58
309 310 1.904537 TCAGATGCTCCAGTGTGTCAT 59.095 47.619 0.00 0.00 0.00 3.06
310 311 2.093816 TCAGATGCTCCAGTGTGTCATC 60.094 50.000 7.33 7.33 35.14 2.92
311 312 1.209019 AGATGCTCCAGTGTGTCATCC 59.791 52.381 10.32 0.00 35.41 3.51
312 313 0.254178 ATGCTCCAGTGTGTCATCCC 59.746 55.000 0.00 0.00 0.00 3.85
313 314 1.126948 TGCTCCAGTGTGTCATCCCA 61.127 55.000 0.00 0.00 0.00 4.37
314 315 0.674895 GCTCCAGTGTGTCATCCCAC 60.675 60.000 0.00 0.00 35.86 4.61
315 316 0.390340 CTCCAGTGTGTCATCCCACG 60.390 60.000 0.00 0.00 38.20 4.94
316 317 2.034879 CCAGTGTGTCATCCCACGC 61.035 63.158 0.00 0.00 44.29 5.34
317 318 2.034879 CAGTGTGTCATCCCACGCC 61.035 63.158 1.58 0.00 44.89 5.68
318 319 2.746277 GTGTGTCATCCCACGCCC 60.746 66.667 0.00 0.00 39.39 6.13
319 320 4.028490 TGTGTCATCCCACGCCCC 62.028 66.667 0.00 0.00 38.20 5.80
322 323 4.832608 GTCATCCCACGCCCCGAC 62.833 72.222 0.00 0.00 0.00 4.79
328 329 4.602259 CCACGCCCCGACGCATAT 62.602 66.667 0.00 0.00 36.19 1.78
329 330 3.337889 CACGCCCCGACGCATATG 61.338 66.667 0.00 0.00 36.19 1.78
332 333 3.349006 GCCCCGACGCATATGCAG 61.349 66.667 26.52 20.20 42.21 4.41
333 334 3.349006 CCCCGACGCATATGCAGC 61.349 66.667 26.52 16.14 42.21 5.25
334 335 2.280389 CCCGACGCATATGCAGCT 60.280 61.111 26.52 8.77 42.21 4.24
335 336 2.313172 CCCGACGCATATGCAGCTC 61.313 63.158 26.52 15.77 42.21 4.09
336 337 2.652079 CCGACGCATATGCAGCTCG 61.652 63.158 26.52 24.48 42.21 5.03
337 338 1.658409 CGACGCATATGCAGCTCGA 60.658 57.895 26.52 0.00 42.21 4.04
338 339 1.603744 CGACGCATATGCAGCTCGAG 61.604 60.000 26.52 8.45 42.21 4.04
339 340 0.596083 GACGCATATGCAGCTCGAGT 60.596 55.000 26.52 14.34 42.21 4.18
340 341 0.179100 ACGCATATGCAGCTCGAGTT 60.179 50.000 26.52 4.78 42.21 3.01
341 342 0.506080 CGCATATGCAGCTCGAGTTC 59.494 55.000 26.52 4.11 42.21 3.01
342 343 0.506080 GCATATGCAGCTCGAGTTCG 59.494 55.000 22.84 3.91 41.59 3.95
343 344 1.845266 CATATGCAGCTCGAGTTCGT 58.155 50.000 15.13 7.39 40.80 3.85
344 345 1.783711 CATATGCAGCTCGAGTTCGTC 59.216 52.381 15.13 0.00 40.80 4.20
345 346 0.100682 TATGCAGCTCGAGTTCGTCC 59.899 55.000 15.13 0.00 40.80 4.79
346 347 1.599606 ATGCAGCTCGAGTTCGTCCT 61.600 55.000 15.13 0.00 40.80 3.85
347 348 1.803519 GCAGCTCGAGTTCGTCCTG 60.804 63.158 15.13 12.21 40.80 3.86
348 349 1.153939 CAGCTCGAGTTCGTCCTGG 60.154 63.158 15.13 0.00 40.80 4.45
349 350 2.182030 GCTCGAGTTCGTCCTGGG 59.818 66.667 15.13 0.00 40.80 4.45
350 351 2.885861 CTCGAGTTCGTCCTGGGG 59.114 66.667 3.62 0.00 40.80 4.96
351 352 1.977544 CTCGAGTTCGTCCTGGGGT 60.978 63.158 3.62 0.00 40.80 4.95
352 353 1.935327 CTCGAGTTCGTCCTGGGGTC 61.935 65.000 3.62 0.00 40.80 4.46
353 354 1.977544 CGAGTTCGTCCTGGGGTCT 60.978 63.158 0.00 0.00 34.11 3.85
354 355 1.891616 GAGTTCGTCCTGGGGTCTC 59.108 63.158 0.00 0.00 0.00 3.36
355 356 1.605971 GAGTTCGTCCTGGGGTCTCC 61.606 65.000 0.00 0.00 0.00 3.71
356 357 2.678934 TTCGTCCTGGGGTCTCCG 60.679 66.667 0.00 0.00 38.76 4.63
359 360 3.775654 GTCCTGGGGTCTCCGCTG 61.776 72.222 0.00 4.03 37.37 5.18
367 368 3.532155 GTCTCCGCTGGCTCCGAT 61.532 66.667 0.00 0.00 0.00 4.18
368 369 3.219928 TCTCCGCTGGCTCCGATC 61.220 66.667 0.00 0.00 0.00 3.69
369 370 3.222855 CTCCGCTGGCTCCGATCT 61.223 66.667 0.00 0.00 0.00 2.75
370 371 3.206211 CTCCGCTGGCTCCGATCTC 62.206 68.421 0.00 0.00 0.00 2.75
371 372 4.292178 CCGCTGGCTCCGATCTCC 62.292 72.222 0.00 0.00 0.00 3.71
372 373 3.531207 CGCTGGCTCCGATCTCCA 61.531 66.667 0.00 0.00 0.00 3.86
374 375 3.136750 CTGGCTCCGATCTCCAGG 58.863 66.667 10.51 0.00 42.70 4.45
375 376 1.760086 CTGGCTCCGATCTCCAGGT 60.760 63.158 10.51 0.00 42.70 4.00
376 377 2.025767 CTGGCTCCGATCTCCAGGTG 62.026 65.000 10.51 0.00 42.70 4.00
377 378 2.107953 GCTCCGATCTCCAGGTGC 59.892 66.667 0.00 0.00 39.38 5.01
378 379 2.415010 CTCCGATCTCCAGGTGCG 59.585 66.667 0.00 0.00 0.00 5.34
379 380 2.044352 TCCGATCTCCAGGTGCGA 60.044 61.111 0.00 0.00 0.00 5.10
380 381 2.105128 CCGATCTCCAGGTGCGAC 59.895 66.667 0.00 0.00 0.00 5.19
381 382 2.710902 CCGATCTCCAGGTGCGACA 61.711 63.158 0.00 0.00 0.00 4.35
382 383 1.439228 CGATCTCCAGGTGCGACAT 59.561 57.895 0.00 0.00 0.00 3.06
383 384 0.873312 CGATCTCCAGGTGCGACATG 60.873 60.000 0.00 0.00 0.00 3.21
384 385 0.176680 GATCTCCAGGTGCGACATGT 59.823 55.000 0.00 0.00 0.00 3.21
385 386 0.107993 ATCTCCAGGTGCGACATGTG 60.108 55.000 1.15 0.00 0.00 3.21
386 387 1.004560 CTCCAGGTGCGACATGTGT 60.005 57.895 1.15 0.00 0.00 3.72
387 388 0.246360 CTCCAGGTGCGACATGTGTA 59.754 55.000 1.15 0.00 0.00 2.90
388 389 0.682292 TCCAGGTGCGACATGTGTAA 59.318 50.000 1.15 0.00 0.00 2.41
389 390 1.277842 TCCAGGTGCGACATGTGTAAT 59.722 47.619 1.15 0.00 0.00 1.89
390 391 1.665679 CCAGGTGCGACATGTGTAATC 59.334 52.381 1.15 0.00 0.00 1.75
391 392 2.621338 CAGGTGCGACATGTGTAATCT 58.379 47.619 1.15 0.00 0.00 2.40
392 393 3.430236 CCAGGTGCGACATGTGTAATCTA 60.430 47.826 1.15 0.00 0.00 1.98
393 394 4.371786 CAGGTGCGACATGTGTAATCTAT 58.628 43.478 1.15 0.00 0.00 1.98
394 395 4.811024 CAGGTGCGACATGTGTAATCTATT 59.189 41.667 1.15 0.00 0.00 1.73
395 396 5.294306 CAGGTGCGACATGTGTAATCTATTT 59.706 40.000 1.15 0.00 0.00 1.40
396 397 5.523916 AGGTGCGACATGTGTAATCTATTTC 59.476 40.000 1.15 0.00 0.00 2.17
397 398 5.277345 GGTGCGACATGTGTAATCTATTTCC 60.277 44.000 1.15 0.00 0.00 3.13
398 399 5.523916 GTGCGACATGTGTAATCTATTTCCT 59.476 40.000 1.15 0.00 0.00 3.36
399 400 6.700081 GTGCGACATGTGTAATCTATTTCCTA 59.300 38.462 1.15 0.00 0.00 2.94
400 401 7.385205 GTGCGACATGTGTAATCTATTTCCTAT 59.615 37.037 1.15 0.00 0.00 2.57
401 402 7.384932 TGCGACATGTGTAATCTATTTCCTATG 59.615 37.037 1.15 0.00 0.00 2.23
402 403 7.622256 GCGACATGTGTAATCTATTTCCTATGC 60.622 40.741 1.15 0.00 0.00 3.14
403 404 7.600375 CGACATGTGTAATCTATTTCCTATGCT 59.400 37.037 1.15 0.00 0.00 3.79
404 405 9.277783 GACATGTGTAATCTATTTCCTATGCTT 57.722 33.333 1.15 0.00 0.00 3.91
405 406 9.632638 ACATGTGTAATCTATTTCCTATGCTTT 57.367 29.630 0.00 0.00 0.00 3.51
417 418 7.654022 TTTCCTATGCTTTAATACCTTTGGG 57.346 36.000 0.00 0.00 38.88 4.12
418 419 5.701224 TCCTATGCTTTAATACCTTTGGGG 58.299 41.667 0.00 0.00 41.89 4.96
419 420 4.280929 CCTATGCTTTAATACCTTTGGGGC 59.719 45.833 0.00 0.00 39.10 5.80
420 421 3.176924 TGCTTTAATACCTTTGGGGCA 57.823 42.857 0.00 0.00 39.10 5.36
461 462 2.036217 TCACATTTCACGTAACCGTCCT 59.964 45.455 0.00 0.00 46.28 3.85
515 516 5.948992 AAACTCCAGTTTAGTGCTGATTC 57.051 39.130 2.74 0.00 45.47 2.52
568 570 9.906660 TGATAACTGATTGAAGCGTTTTAAATT 57.093 25.926 0.00 0.00 0.00 1.82
743 746 1.760086 CTCCCCCGAGCTCACTCAT 60.760 63.158 15.40 0.00 43.66 2.90
789 799 3.007398 TCCACTGCTTCTCTTCTTCTTCC 59.993 47.826 0.00 0.00 0.00 3.46
951 980 3.074094 AGGGTTAGGGTTTGAAGAAGGAC 59.926 47.826 0.00 0.00 0.00 3.85
953 982 4.508584 GGGTTAGGGTTTGAAGAAGGACAT 60.509 45.833 0.00 0.00 0.00 3.06
1047 1078 6.614657 TCCAGATACTGTGATAGATCCAAGA 58.385 40.000 0.00 0.00 0.00 3.02
1076 1107 3.370315 GGGCTTGTGACTGAATCTGATCT 60.370 47.826 0.00 0.00 0.00 2.75
1136 1167 1.068055 GGCATTTGAAGGCACTGACAG 60.068 52.381 0.00 0.00 40.86 3.51
1326 1374 7.307694 CAAAGAGCAATGAAAACATAGCACTA 58.692 34.615 0.00 0.00 0.00 2.74
1562 1614 7.256835 GGGATATGTATCATGAGGAGAACCTTT 60.257 40.741 0.09 0.00 39.37 3.11
1595 1647 5.946942 AGACAAAGAGGCTCATGAGATAA 57.053 39.130 27.04 0.00 0.00 1.75
1825 1877 4.464008 TCAAGAAAGAACAGAGGTGCATT 58.536 39.130 0.00 0.00 0.00 3.56
1895 1947 4.017958 AGGAGATACAAGTGGAGAGAGACA 60.018 45.833 0.00 0.00 0.00 3.41
1945 1997 4.407496 GCATATCATTGCTGAGCTCTTC 57.593 45.455 16.19 7.05 39.57 2.87
2213 2276 4.551215 AATCCTATTTGTAATGCCCCCA 57.449 40.909 0.00 0.00 0.00 4.96
2669 4606 3.446570 GGCGAGCCTGCAATGCTT 61.447 61.111 6.82 0.00 38.16 3.91
2711 4648 1.070786 TCGTCCTTGTCTTGGTGCC 59.929 57.895 0.00 0.00 0.00 5.01
2961 4898 0.036388 CTGGTGTACCTTGTGGCGAT 60.036 55.000 2.32 0.00 36.63 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 9.507329 AGATATCACAACACAACTCTAAAACAT 57.493 29.630 5.32 0.00 0.00 2.71
14 15 8.902540 AGATATCACAACACAACTCTAAAACA 57.097 30.769 5.32 0.00 0.00 2.83
15 16 9.813080 GAAGATATCACAACACAACTCTAAAAC 57.187 33.333 5.32 0.00 0.00 2.43
16 17 8.999431 GGAAGATATCACAACACAACTCTAAAA 58.001 33.333 5.32 0.00 0.00 1.52
17 18 7.606456 GGGAAGATATCACAACACAACTCTAAA 59.394 37.037 5.32 0.00 0.00 1.85
18 19 7.103641 GGGAAGATATCACAACACAACTCTAA 58.896 38.462 5.32 0.00 0.00 2.10
19 20 6.627287 CGGGAAGATATCACAACACAACTCTA 60.627 42.308 5.32 0.00 0.00 2.43
20 21 5.491982 GGGAAGATATCACAACACAACTCT 58.508 41.667 5.32 0.00 0.00 3.24
21 22 4.330074 CGGGAAGATATCACAACACAACTC 59.670 45.833 5.32 0.00 0.00 3.01
22 23 4.253685 CGGGAAGATATCACAACACAACT 58.746 43.478 5.32 0.00 0.00 3.16
23 24 4.000988 ACGGGAAGATATCACAACACAAC 58.999 43.478 5.32 0.00 0.00 3.32
24 25 4.000325 CACGGGAAGATATCACAACACAA 59.000 43.478 5.32 0.00 0.00 3.33
25 26 3.259625 TCACGGGAAGATATCACAACACA 59.740 43.478 5.32 0.00 0.00 3.72
26 27 3.857052 TCACGGGAAGATATCACAACAC 58.143 45.455 5.32 0.00 0.00 3.32
27 28 3.513912 ACTCACGGGAAGATATCACAACA 59.486 43.478 5.32 0.00 0.00 3.33
28 29 4.113354 GACTCACGGGAAGATATCACAAC 58.887 47.826 5.32 0.00 0.00 3.32
29 30 3.132289 GGACTCACGGGAAGATATCACAA 59.868 47.826 5.32 0.00 0.00 3.33
30 31 2.693591 GGACTCACGGGAAGATATCACA 59.306 50.000 5.32 0.00 0.00 3.58
31 32 2.959707 AGGACTCACGGGAAGATATCAC 59.040 50.000 5.32 0.00 0.00 3.06
32 33 3.314307 AGGACTCACGGGAAGATATCA 57.686 47.619 5.32 0.00 0.00 2.15
33 34 3.637229 TCAAGGACTCACGGGAAGATATC 59.363 47.826 0.00 0.00 0.00 1.63
34 35 3.643237 TCAAGGACTCACGGGAAGATAT 58.357 45.455 0.00 0.00 0.00 1.63
35 36 3.095912 TCAAGGACTCACGGGAAGATA 57.904 47.619 0.00 0.00 0.00 1.98
36 37 1.938585 TCAAGGACTCACGGGAAGAT 58.061 50.000 0.00 0.00 0.00 2.40
37 38 1.825474 GATCAAGGACTCACGGGAAGA 59.175 52.381 0.00 0.00 0.00 2.87
38 39 1.827969 AGATCAAGGACTCACGGGAAG 59.172 52.381 0.00 0.00 0.00 3.46
39 40 1.938585 AGATCAAGGACTCACGGGAA 58.061 50.000 0.00 0.00 0.00 3.97
40 41 1.550524 CAAGATCAAGGACTCACGGGA 59.449 52.381 0.00 0.00 0.00 5.14
41 42 1.550524 TCAAGATCAAGGACTCACGGG 59.449 52.381 0.00 0.00 0.00 5.28
42 43 3.452474 GATCAAGATCAAGGACTCACGG 58.548 50.000 5.22 0.00 37.74 4.94
43 44 3.111838 CGATCAAGATCAAGGACTCACG 58.888 50.000 10.39 0.00 37.69 4.35
44 45 4.116747 ACGATCAAGATCAAGGACTCAC 57.883 45.455 10.39 0.00 37.69 3.51
45 46 4.705023 TGTACGATCAAGATCAAGGACTCA 59.295 41.667 10.39 0.00 37.69 3.41
46 47 5.038033 GTGTACGATCAAGATCAAGGACTC 58.962 45.833 10.39 0.26 37.69 3.36
47 48 4.462834 TGTGTACGATCAAGATCAAGGACT 59.537 41.667 10.39 0.00 37.69 3.85
48 49 4.744570 TGTGTACGATCAAGATCAAGGAC 58.255 43.478 10.39 2.84 37.69 3.85
49 50 5.598416 ATGTGTACGATCAAGATCAAGGA 57.402 39.130 10.39 0.00 37.69 3.36
50 51 6.481134 CAAATGTGTACGATCAAGATCAAGG 58.519 40.000 10.39 0.00 37.69 3.61
51 52 5.961843 GCAAATGTGTACGATCAAGATCAAG 59.038 40.000 10.39 0.00 37.69 3.02
52 53 5.445806 CGCAAATGTGTACGATCAAGATCAA 60.446 40.000 10.39 0.00 37.69 2.57
53 54 4.032786 CGCAAATGTGTACGATCAAGATCA 59.967 41.667 10.39 0.00 37.69 2.92
54 55 4.032900 ACGCAAATGTGTACGATCAAGATC 59.967 41.667 0.00 0.00 36.94 2.75
55 56 3.932710 ACGCAAATGTGTACGATCAAGAT 59.067 39.130 0.00 0.00 36.94 2.40
56 57 3.122780 CACGCAAATGTGTACGATCAAGA 59.877 43.478 0.00 0.00 36.94 3.02
57 58 3.407252 CACGCAAATGTGTACGATCAAG 58.593 45.455 0.00 0.00 36.94 3.02
58 59 2.412195 GCACGCAAATGTGTACGATCAA 60.412 45.455 0.00 0.00 41.94 2.57
59 60 1.127766 GCACGCAAATGTGTACGATCA 59.872 47.619 0.00 0.00 41.94 2.92
60 61 1.127766 TGCACGCAAATGTGTACGATC 59.872 47.619 0.00 0.00 41.94 3.69
61 62 1.152510 TGCACGCAAATGTGTACGAT 58.847 45.000 0.00 0.00 41.94 3.73
62 63 1.136113 CATGCACGCAAATGTGTACGA 60.136 47.619 0.00 0.00 41.94 3.43
63 64 1.136113 TCATGCACGCAAATGTGTACG 60.136 47.619 0.00 0.00 41.94 3.67
64 65 2.610219 TCATGCACGCAAATGTGTAC 57.390 45.000 0.00 0.00 41.94 2.90
65 66 3.846423 AATCATGCACGCAAATGTGTA 57.154 38.095 0.00 0.00 41.94 2.90
66 67 2.728690 AATCATGCACGCAAATGTGT 57.271 40.000 0.00 0.00 41.94 3.72
67 68 3.544682 CACTAATCATGCACGCAAATGTG 59.455 43.478 0.00 0.00 42.81 3.21
68 69 3.191162 ACACTAATCATGCACGCAAATGT 59.809 39.130 0.00 0.00 0.00 2.71
69 70 3.761657 ACACTAATCATGCACGCAAATG 58.238 40.909 0.00 0.00 0.00 2.32
70 71 4.494035 CGTACACTAATCATGCACGCAAAT 60.494 41.667 0.00 0.00 30.70 2.32
71 72 3.181525 CGTACACTAATCATGCACGCAAA 60.182 43.478 0.00 0.00 30.70 3.68
72 73 2.347150 CGTACACTAATCATGCACGCAA 59.653 45.455 0.00 0.00 30.70 4.85
73 74 1.923864 CGTACACTAATCATGCACGCA 59.076 47.619 0.00 0.00 30.70 5.24
74 75 1.257936 CCGTACACTAATCATGCACGC 59.742 52.381 0.00 0.00 35.86 5.34
75 76 2.534349 GACCGTACACTAATCATGCACG 59.466 50.000 0.00 0.00 36.74 5.34
76 77 3.517602 TGACCGTACACTAATCATGCAC 58.482 45.455 0.00 0.00 0.00 4.57
77 78 3.878160 TGACCGTACACTAATCATGCA 57.122 42.857 0.00 0.00 0.00 3.96
78 79 5.556382 CGATTTGACCGTACACTAATCATGC 60.556 44.000 13.93 0.00 32.03 4.06
79 80 5.051039 CCGATTTGACCGTACACTAATCATG 60.051 44.000 13.93 0.00 32.03 3.07
80 81 5.047847 CCGATTTGACCGTACACTAATCAT 58.952 41.667 13.93 0.00 32.03 2.45
81 82 4.426416 CCGATTTGACCGTACACTAATCA 58.574 43.478 13.93 0.90 32.03 2.57
82 83 3.800506 CCCGATTTGACCGTACACTAATC 59.199 47.826 0.00 2.04 0.00 1.75
83 84 3.448301 TCCCGATTTGACCGTACACTAAT 59.552 43.478 0.00 0.00 0.00 1.73
84 85 2.824936 TCCCGATTTGACCGTACACTAA 59.175 45.455 0.00 0.00 0.00 2.24
85 86 2.424601 CTCCCGATTTGACCGTACACTA 59.575 50.000 0.00 0.00 0.00 2.74
86 87 1.203994 CTCCCGATTTGACCGTACACT 59.796 52.381 0.00 0.00 0.00 3.55
87 88 1.636988 CTCCCGATTTGACCGTACAC 58.363 55.000 0.00 0.00 0.00 2.90
88 89 0.108520 GCTCCCGATTTGACCGTACA 60.109 55.000 0.00 0.00 0.00 2.90
89 90 1.143969 CGCTCCCGATTTGACCGTAC 61.144 60.000 0.00 0.00 36.29 3.67
90 91 1.140161 CGCTCCCGATTTGACCGTA 59.860 57.895 0.00 0.00 36.29 4.02
91 92 2.125673 CGCTCCCGATTTGACCGT 60.126 61.111 0.00 0.00 36.29 4.83
92 93 2.125673 ACGCTCCCGATTTGACCG 60.126 61.111 0.00 0.00 38.29 4.79
93 94 1.079405 TGACGCTCCCGATTTGACC 60.079 57.895 0.00 0.00 38.29 4.02
94 95 0.669318 TGTGACGCTCCCGATTTGAC 60.669 55.000 0.00 0.00 38.29 3.18
95 96 0.034198 TTGTGACGCTCCCGATTTGA 59.966 50.000 0.00 0.00 38.29 2.69
96 97 0.443869 CTTGTGACGCTCCCGATTTG 59.556 55.000 0.00 0.00 38.29 2.32
97 98 0.034896 ACTTGTGACGCTCCCGATTT 59.965 50.000 0.00 0.00 38.29 2.17
98 99 0.034896 AACTTGTGACGCTCCCGATT 59.965 50.000 0.00 0.00 38.29 3.34
99 100 0.670546 CAACTTGTGACGCTCCCGAT 60.671 55.000 0.00 0.00 38.29 4.18
100 101 1.300620 CAACTTGTGACGCTCCCGA 60.301 57.895 0.00 0.00 38.29 5.14
101 102 2.954753 GCAACTTGTGACGCTCCCG 61.955 63.158 0.00 0.00 41.14 5.14
102 103 1.444119 TTGCAACTTGTGACGCTCCC 61.444 55.000 0.00 0.00 0.00 4.30
103 104 0.593128 ATTGCAACTTGTGACGCTCC 59.407 50.000 0.00 0.00 0.00 4.70
104 105 1.400242 GGATTGCAACTTGTGACGCTC 60.400 52.381 0.00 0.00 0.00 5.03
105 106 0.593128 GGATTGCAACTTGTGACGCT 59.407 50.000 0.00 0.00 0.00 5.07
106 107 0.387239 GGGATTGCAACTTGTGACGC 60.387 55.000 0.00 0.00 0.00 5.19
107 108 0.240945 GGGGATTGCAACTTGTGACG 59.759 55.000 0.00 0.00 0.00 4.35
108 109 1.620822 AGGGGATTGCAACTTGTGAC 58.379 50.000 0.00 0.00 0.00 3.67
109 110 3.245229 ACATAGGGGATTGCAACTTGTGA 60.245 43.478 0.00 0.00 0.00 3.58
110 111 3.091545 ACATAGGGGATTGCAACTTGTG 58.908 45.455 0.00 0.00 0.00 3.33
111 112 3.356290 GACATAGGGGATTGCAACTTGT 58.644 45.455 0.00 2.23 0.00 3.16
112 113 2.689983 GGACATAGGGGATTGCAACTTG 59.310 50.000 0.00 0.00 0.00 3.16
113 114 2.358195 GGGACATAGGGGATTGCAACTT 60.358 50.000 0.00 0.00 0.00 2.66
114 115 1.215423 GGGACATAGGGGATTGCAACT 59.785 52.381 0.00 0.00 0.00 3.16
115 116 1.215423 AGGGACATAGGGGATTGCAAC 59.785 52.381 0.00 0.00 0.00 4.17
116 117 1.607225 AGGGACATAGGGGATTGCAA 58.393 50.000 0.00 0.00 0.00 4.08
117 118 1.494721 GAAGGGACATAGGGGATTGCA 59.505 52.381 0.00 0.00 0.00 4.08
118 119 1.494721 TGAAGGGACATAGGGGATTGC 59.505 52.381 0.00 0.00 0.00 3.56
119 120 2.780010 AGTGAAGGGACATAGGGGATTG 59.220 50.000 0.00 0.00 0.00 2.67
120 121 3.151542 AGTGAAGGGACATAGGGGATT 57.848 47.619 0.00 0.00 0.00 3.01
121 122 2.897823 AGTGAAGGGACATAGGGGAT 57.102 50.000 0.00 0.00 0.00 3.85
122 123 2.478292 GAAGTGAAGGGACATAGGGGA 58.522 52.381 0.00 0.00 0.00 4.81
123 124 1.490910 GGAAGTGAAGGGACATAGGGG 59.509 57.143 0.00 0.00 0.00 4.79
124 125 2.436173 GAGGAAGTGAAGGGACATAGGG 59.564 54.545 0.00 0.00 0.00 3.53
125 126 2.436173 GGAGGAAGTGAAGGGACATAGG 59.564 54.545 0.00 0.00 0.00 2.57
126 127 2.101582 CGGAGGAAGTGAAGGGACATAG 59.898 54.545 0.00 0.00 0.00 2.23
127 128 2.108168 CGGAGGAAGTGAAGGGACATA 58.892 52.381 0.00 0.00 0.00 2.29
128 129 0.905357 CGGAGGAAGTGAAGGGACAT 59.095 55.000 0.00 0.00 0.00 3.06
129 130 0.471211 ACGGAGGAAGTGAAGGGACA 60.471 55.000 0.00 0.00 0.00 4.02
130 131 0.246910 GACGGAGGAAGTGAAGGGAC 59.753 60.000 0.00 0.00 0.00 4.46
131 132 0.178944 TGACGGAGGAAGTGAAGGGA 60.179 55.000 0.00 0.00 0.00 4.20
132 133 0.037232 GTGACGGAGGAAGTGAAGGG 60.037 60.000 0.00 0.00 0.00 3.95
133 134 0.388649 CGTGACGGAGGAAGTGAAGG 60.389 60.000 0.00 0.00 0.00 3.46
134 135 1.009389 GCGTGACGGAGGAAGTGAAG 61.009 60.000 7.25 0.00 0.00 3.02
135 136 1.006571 GCGTGACGGAGGAAGTGAA 60.007 57.895 7.25 0.00 0.00 3.18
136 137 1.740332 TTGCGTGACGGAGGAAGTGA 61.740 55.000 7.25 0.00 0.00 3.41
137 138 1.284982 CTTGCGTGACGGAGGAAGTG 61.285 60.000 7.25 0.00 32.29 3.16
138 139 1.006102 CTTGCGTGACGGAGGAAGT 60.006 57.895 7.25 0.00 32.29 3.01
139 140 0.734253 CTCTTGCGTGACGGAGGAAG 60.734 60.000 12.70 1.42 32.83 3.46
140 141 1.289066 CTCTTGCGTGACGGAGGAA 59.711 57.895 12.70 0.00 32.83 3.36
141 142 1.863662 GACTCTTGCGTGACGGAGGA 61.864 60.000 11.13 11.13 32.26 3.71
142 143 1.444553 GACTCTTGCGTGACGGAGG 60.445 63.158 7.25 4.28 0.00 4.30
143 144 0.318699 TTGACTCTTGCGTGACGGAG 60.319 55.000 7.25 7.66 0.00 4.63
144 145 0.318699 CTTGACTCTTGCGTGACGGA 60.319 55.000 7.25 0.00 0.00 4.69
145 146 0.318699 TCTTGACTCTTGCGTGACGG 60.319 55.000 7.25 0.00 0.00 4.79
146 147 0.778815 GTCTTGACTCTTGCGTGACG 59.221 55.000 0.00 0.00 0.00 4.35
147 148 1.140816 GGTCTTGACTCTTGCGTGAC 58.859 55.000 0.61 0.00 0.00 3.67
148 149 0.750249 TGGTCTTGACTCTTGCGTGA 59.250 50.000 0.61 0.00 0.00 4.35
149 150 1.462283 CATGGTCTTGACTCTTGCGTG 59.538 52.381 0.61 0.00 0.00 5.34
150 151 1.609061 CCATGGTCTTGACTCTTGCGT 60.609 52.381 2.57 0.00 0.00 5.24
151 152 1.081892 CCATGGTCTTGACTCTTGCG 58.918 55.000 2.57 0.00 0.00 4.85
152 153 0.807496 GCCATGGTCTTGACTCTTGC 59.193 55.000 14.67 0.00 0.00 4.01
153 154 1.081892 CGCCATGGTCTTGACTCTTG 58.918 55.000 14.67 1.01 0.00 3.02
154 155 0.036010 CCGCCATGGTCTTGACTCTT 60.036 55.000 14.67 0.00 0.00 2.85
155 156 1.599047 CCGCCATGGTCTTGACTCT 59.401 57.895 14.67 0.00 0.00 3.24
156 157 2.109126 GCCGCCATGGTCTTGACTC 61.109 63.158 14.67 0.00 41.21 3.36
157 158 2.045926 GCCGCCATGGTCTTGACT 60.046 61.111 14.67 0.00 41.21 3.41
158 159 3.134127 GGCCGCCATGGTCTTGAC 61.134 66.667 14.67 0.00 40.15 3.18
159 160 4.424711 GGGCCGCCATGGTCTTGA 62.425 66.667 14.67 0.00 44.07 3.02
160 161 4.431131 AGGGCCGCCATGGTCTTG 62.431 66.667 14.67 0.93 44.07 3.02
161 162 4.431131 CAGGGCCGCCATGGTCTT 62.431 66.667 16.51 0.00 44.07 3.01
163 164 4.864334 CTCAGGGCCGCCATGGTC 62.864 72.222 23.26 4.79 43.80 4.02
171 172 4.559063 CCATGGAGCTCAGGGCCG 62.559 72.222 17.19 0.00 40.68 6.13
175 176 1.817099 GAACGCCATGGAGCTCAGG 60.817 63.158 18.40 14.82 0.00 3.86
176 177 0.392193 AAGAACGCCATGGAGCTCAG 60.392 55.000 18.40 4.52 0.00 3.35
177 178 0.391661 GAAGAACGCCATGGAGCTCA 60.392 55.000 18.40 1.87 0.00 4.26
178 179 0.107945 AGAAGAACGCCATGGAGCTC 60.108 55.000 18.40 13.97 0.00 4.09
179 180 0.107945 GAGAAGAACGCCATGGAGCT 60.108 55.000 18.40 2.50 0.00 4.09
180 181 1.092345 GGAGAAGAACGCCATGGAGC 61.092 60.000 18.40 0.00 38.35 4.70
181 182 0.807667 CGGAGAAGAACGCCATGGAG 60.808 60.000 18.40 16.40 38.38 3.86
182 183 1.218047 CGGAGAAGAACGCCATGGA 59.782 57.895 18.40 0.00 38.38 3.41
183 184 1.079127 ACGGAGAAGAACGCCATGG 60.079 57.895 7.63 7.63 38.38 3.66
184 185 1.084370 GGACGGAGAAGAACGCCATG 61.084 60.000 0.00 0.00 38.38 3.66
185 186 1.218316 GGACGGAGAAGAACGCCAT 59.782 57.895 0.00 0.00 38.38 4.40
186 187 1.541310 ATGGACGGAGAAGAACGCCA 61.541 55.000 0.00 0.00 38.38 5.69
187 188 0.806492 GATGGACGGAGAAGAACGCC 60.806 60.000 0.00 0.00 35.10 5.68
188 189 0.806492 GGATGGACGGAGAAGAACGC 60.806 60.000 0.00 0.00 0.00 4.84
189 190 0.179108 GGGATGGACGGAGAAGAACG 60.179 60.000 0.00 0.00 0.00 3.95
190 191 0.178301 GGGGATGGACGGAGAAGAAC 59.822 60.000 0.00 0.00 0.00 3.01
191 192 0.981277 GGGGGATGGACGGAGAAGAA 60.981 60.000 0.00 0.00 0.00 2.52
192 193 1.382695 GGGGGATGGACGGAGAAGA 60.383 63.158 0.00 0.00 0.00 2.87
193 194 1.383248 AGGGGGATGGACGGAGAAG 60.383 63.158 0.00 0.00 0.00 2.85
194 195 1.689233 CAGGGGGATGGACGGAGAA 60.689 63.158 0.00 0.00 0.00 2.87
195 196 2.041922 CAGGGGGATGGACGGAGA 60.042 66.667 0.00 0.00 0.00 3.71
196 197 3.866582 GCAGGGGGATGGACGGAG 61.867 72.222 0.00 0.00 0.00 4.63
200 201 4.129148 GTGGGCAGGGGGATGGAC 62.129 72.222 0.00 0.00 0.00 4.02
203 204 4.447342 GTGGTGGGCAGGGGGATG 62.447 72.222 0.00 0.00 0.00 3.51
209 210 2.593468 CTATGGTCGTGGTGGGCAGG 62.593 65.000 0.00 0.00 0.00 4.85
210 211 1.153369 CTATGGTCGTGGTGGGCAG 60.153 63.158 0.00 0.00 0.00 4.85
211 212 2.986290 CTATGGTCGTGGTGGGCA 59.014 61.111 0.00 0.00 0.00 5.36
212 213 2.513897 GCTATGGTCGTGGTGGGC 60.514 66.667 0.00 0.00 0.00 5.36
213 214 2.189521 GGCTATGGTCGTGGTGGG 59.810 66.667 0.00 0.00 0.00 4.61
214 215 1.144057 GAGGCTATGGTCGTGGTGG 59.856 63.158 0.00 0.00 0.00 4.61
215 216 0.179100 CAGAGGCTATGGTCGTGGTG 60.179 60.000 0.00 0.00 0.00 4.17
216 217 1.330655 CCAGAGGCTATGGTCGTGGT 61.331 60.000 20.00 0.00 32.85 4.16
217 218 1.043116 TCCAGAGGCTATGGTCGTGG 61.043 60.000 26.25 1.10 39.01 4.94
218 219 1.043816 ATCCAGAGGCTATGGTCGTG 58.956 55.000 26.25 2.02 39.01 4.35
219 220 1.043816 CATCCAGAGGCTATGGTCGT 58.956 55.000 26.25 12.04 39.01 4.34
220 221 0.320247 GCATCCAGAGGCTATGGTCG 60.320 60.000 26.25 18.96 39.01 4.79
221 222 0.761187 TGCATCCAGAGGCTATGGTC 59.239 55.000 26.25 16.85 39.14 4.02
222 223 0.471617 GTGCATCCAGAGGCTATGGT 59.528 55.000 26.25 12.12 39.14 3.55
223 224 0.763652 AGTGCATCCAGAGGCTATGG 59.236 55.000 22.12 22.12 39.14 2.74
224 225 2.612471 GCTAGTGCATCCAGAGGCTATG 60.612 54.545 1.19 1.19 39.14 2.23
225 226 1.622811 GCTAGTGCATCCAGAGGCTAT 59.377 52.381 5.83 0.00 39.14 2.97
226 227 1.043816 GCTAGTGCATCCAGAGGCTA 58.956 55.000 5.83 0.00 39.14 3.93
227 228 0.979709 TGCTAGTGCATCCAGAGGCT 60.980 55.000 5.83 0.00 45.31 4.58
228 229 1.524002 TGCTAGTGCATCCAGAGGC 59.476 57.895 0.00 0.00 45.31 4.70
239 240 2.816958 CTGTGGCGGCTGCTAGTG 60.817 66.667 18.85 2.90 42.25 2.74
240 241 2.997315 TCTGTGGCGGCTGCTAGT 60.997 61.111 18.85 0.00 42.25 2.57
241 242 2.510238 GTCTGTGGCGGCTGCTAG 60.510 66.667 18.85 13.38 42.25 3.42
242 243 4.082523 GGTCTGTGGCGGCTGCTA 62.083 66.667 18.85 8.97 42.25 3.49
248 249 4.704833 CTGGTGGGTCTGTGGCGG 62.705 72.222 0.00 0.00 0.00 6.13
250 251 3.909086 GAGCTGGTGGGTCTGTGGC 62.909 68.421 0.00 0.00 39.18 5.01
251 252 2.348998 GAGCTGGTGGGTCTGTGG 59.651 66.667 0.00 0.00 39.18 4.17
252 253 2.177594 GAGGAGCTGGTGGGTCTGTG 62.178 65.000 0.00 0.00 41.70 3.66
253 254 1.915769 GAGGAGCTGGTGGGTCTGT 60.916 63.158 0.00 0.00 41.70 3.41
254 255 2.664081 GGAGGAGCTGGTGGGTCTG 61.664 68.421 0.00 0.00 41.70 3.51
255 256 2.284995 GGAGGAGCTGGTGGGTCT 60.285 66.667 0.00 0.00 41.70 3.85
256 257 3.775654 CGGAGGAGCTGGTGGGTC 61.776 72.222 0.00 0.00 41.31 4.46
264 265 4.790962 TACGACCGCGGAGGAGCT 62.791 66.667 35.90 8.10 45.00 4.09
265 266 3.539560 GATACGACCGCGGAGGAGC 62.540 68.421 35.90 21.16 45.00 4.70
266 267 2.638154 GATACGACCGCGGAGGAG 59.362 66.667 35.90 21.00 45.00 3.69
267 268 2.898920 AAGGATACGACCGCGGAGGA 62.899 60.000 35.90 22.72 43.22 3.71
268 269 2.403671 GAAGGATACGACCGCGGAGG 62.404 65.000 35.90 24.63 45.52 4.30
269 270 1.008767 GAAGGATACGACCGCGGAG 60.009 63.158 35.90 26.65 43.17 4.63
270 271 1.105167 ATGAAGGATACGACCGCGGA 61.105 55.000 35.90 10.13 43.17 5.54
271 272 0.663568 GATGAAGGATACGACCGCGG 60.664 60.000 26.86 26.86 43.17 6.46
272 273 0.030235 TGATGAAGGATACGACCGCG 59.970 55.000 0.00 0.00 46.39 6.46
273 274 1.337071 TCTGATGAAGGATACGACCGC 59.663 52.381 0.00 0.00 46.39 5.68
274 275 3.569548 CATCTGATGAAGGATACGACCG 58.430 50.000 12.27 0.00 46.39 4.79
275 276 3.006323 AGCATCTGATGAAGGATACGACC 59.994 47.826 21.30 0.00 46.39 4.79
276 277 4.233789 GAGCATCTGATGAAGGATACGAC 58.766 47.826 21.30 0.00 46.39 4.34
277 278 3.256879 GGAGCATCTGATGAAGGATACGA 59.743 47.826 21.30 0.00 37.02 3.43
278 279 3.006217 TGGAGCATCTGATGAAGGATACG 59.994 47.826 21.30 0.00 37.02 3.06
279 280 4.040217 ACTGGAGCATCTGATGAAGGATAC 59.960 45.833 21.30 1.72 33.73 2.24
280 281 4.040095 CACTGGAGCATCTGATGAAGGATA 59.960 45.833 21.30 1.50 33.73 2.59
281 282 3.047115 ACTGGAGCATCTGATGAAGGAT 58.953 45.455 21.30 1.13 33.73 3.24
282 283 2.169978 CACTGGAGCATCTGATGAAGGA 59.830 50.000 21.30 1.35 33.73 3.36
283 284 2.093075 ACACTGGAGCATCTGATGAAGG 60.093 50.000 21.30 8.06 33.73 3.46
284 285 2.937149 CACACTGGAGCATCTGATGAAG 59.063 50.000 21.30 13.38 33.73 3.02
285 286 2.303890 ACACACTGGAGCATCTGATGAA 59.696 45.455 21.30 2.71 33.73 2.57
286 287 1.904537 ACACACTGGAGCATCTGATGA 59.095 47.619 21.30 0.00 33.73 2.92
287 288 2.277969 GACACACTGGAGCATCTGATG 58.722 52.381 13.26 13.26 33.73 3.07
288 289 1.904537 TGACACACTGGAGCATCTGAT 59.095 47.619 0.00 0.00 33.73 2.90
289 290 1.341080 TGACACACTGGAGCATCTGA 58.659 50.000 0.00 0.00 33.73 3.27
290 291 2.277969 GATGACACACTGGAGCATCTG 58.722 52.381 0.00 0.00 34.15 2.90
291 292 1.209019 GGATGACACACTGGAGCATCT 59.791 52.381 0.00 0.00 36.49 2.90
292 293 1.661341 GGATGACACACTGGAGCATC 58.339 55.000 0.00 0.00 35.74 3.91
293 294 0.254178 GGGATGACACACTGGAGCAT 59.746 55.000 0.00 0.00 0.00 3.79
294 295 1.126948 TGGGATGACACACTGGAGCA 61.127 55.000 0.00 0.00 0.00 4.26
295 296 0.674895 GTGGGATGACACACTGGAGC 60.675 60.000 0.00 0.00 45.87 4.70
296 297 3.540211 GTGGGATGACACACTGGAG 57.460 57.895 0.00 0.00 45.87 3.86
301 302 2.746277 GGGCGTGGGATGACACAC 60.746 66.667 0.00 0.00 45.89 3.82
302 303 4.028490 GGGGCGTGGGATGACACA 62.028 66.667 0.00 0.00 41.38 3.72
305 306 4.832608 GTCGGGGCGTGGGATGAC 62.833 72.222 0.00 0.00 0.00 3.06
311 312 4.602259 ATATGCGTCGGGGCGTGG 62.602 66.667 0.00 0.00 35.06 4.94
312 313 3.337889 CATATGCGTCGGGGCGTG 61.338 66.667 0.00 0.00 35.06 5.34
315 316 3.349006 CTGCATATGCGTCGGGGC 61.349 66.667 22.21 0.00 45.83 5.80
316 317 3.349006 GCTGCATATGCGTCGGGG 61.349 66.667 22.21 9.15 45.83 5.73
317 318 2.280389 AGCTGCATATGCGTCGGG 60.280 61.111 22.21 10.74 45.83 5.14
318 319 2.652079 CGAGCTGCATATGCGTCGG 61.652 63.158 26.89 17.19 45.83 4.79
319 320 1.603744 CTCGAGCTGCATATGCGTCG 61.604 60.000 27.90 27.90 45.83 5.12
320 321 0.596083 ACTCGAGCTGCATATGCGTC 60.596 55.000 22.21 16.66 45.83 5.19
321 322 0.179100 AACTCGAGCTGCATATGCGT 60.179 50.000 22.21 9.82 45.83 5.24
322 323 0.506080 GAACTCGAGCTGCATATGCG 59.494 55.000 22.21 17.15 45.83 4.73
323 324 0.506080 CGAACTCGAGCTGCATATGC 59.494 55.000 21.09 21.09 43.02 3.14
324 325 1.783711 GACGAACTCGAGCTGCATATG 59.216 52.381 13.61 0.00 43.02 1.78
325 326 1.269309 GGACGAACTCGAGCTGCATAT 60.269 52.381 13.61 0.00 43.02 1.78
326 327 0.100682 GGACGAACTCGAGCTGCATA 59.899 55.000 13.61 0.00 43.02 3.14
327 328 1.153745 GGACGAACTCGAGCTGCAT 60.154 57.895 13.61 0.00 43.02 3.96
328 329 2.258591 GGACGAACTCGAGCTGCA 59.741 61.111 13.61 0.00 43.02 4.41
329 330 1.803519 CAGGACGAACTCGAGCTGC 60.804 63.158 13.61 0.63 43.02 5.25
330 331 1.153939 CCAGGACGAACTCGAGCTG 60.154 63.158 13.61 10.28 43.02 4.24
331 332 2.344203 CCCAGGACGAACTCGAGCT 61.344 63.158 13.61 0.00 43.02 4.09
332 333 2.182030 CCCAGGACGAACTCGAGC 59.818 66.667 13.61 0.00 43.02 5.03
333 334 1.935327 GACCCCAGGACGAACTCGAG 61.935 65.000 11.84 11.84 43.02 4.04
334 335 1.975407 GACCCCAGGACGAACTCGA 60.975 63.158 6.05 0.00 43.02 4.04
335 336 1.935327 GAGACCCCAGGACGAACTCG 61.935 65.000 0.00 0.00 46.33 4.18
336 337 1.605971 GGAGACCCCAGGACGAACTC 61.606 65.000 0.00 0.00 34.14 3.01
337 338 1.609794 GGAGACCCCAGGACGAACT 60.610 63.158 0.00 0.00 34.14 3.01
338 339 2.979649 GGAGACCCCAGGACGAAC 59.020 66.667 0.00 0.00 34.14 3.95
339 340 2.678934 CGGAGACCCCAGGACGAA 60.679 66.667 0.00 0.00 34.14 3.85
342 343 3.775654 CAGCGGAGACCCCAGGAC 61.776 72.222 0.00 0.00 34.14 3.85
350 351 3.492311 GATCGGAGCCAGCGGAGAC 62.492 68.421 0.00 0.00 0.00 3.36
351 352 3.219928 GATCGGAGCCAGCGGAGA 61.220 66.667 0.00 0.00 0.00 3.71
352 353 3.206211 GAGATCGGAGCCAGCGGAG 62.206 68.421 0.00 0.00 0.00 4.63
353 354 3.219928 GAGATCGGAGCCAGCGGA 61.220 66.667 0.00 0.00 0.00 5.54
354 355 4.292178 GGAGATCGGAGCCAGCGG 62.292 72.222 0.00 0.00 0.00 5.52
355 356 3.496875 CTGGAGATCGGAGCCAGCG 62.497 68.421 11.98 0.00 42.30 5.18
356 357 2.420890 CTGGAGATCGGAGCCAGC 59.579 66.667 11.98 0.00 42.30 4.85
357 358 1.760086 ACCTGGAGATCGGAGCCAG 60.760 63.158 15.60 15.60 46.83 4.85
358 359 2.060383 CACCTGGAGATCGGAGCCA 61.060 63.158 0.00 0.00 0.00 4.75
359 360 2.818132 CACCTGGAGATCGGAGCC 59.182 66.667 0.00 0.00 0.00 4.70
360 361 2.107953 GCACCTGGAGATCGGAGC 59.892 66.667 0.00 0.00 0.00 4.70
361 362 2.121538 TCGCACCTGGAGATCGGAG 61.122 63.158 0.00 0.00 0.00 4.63
362 363 2.044352 TCGCACCTGGAGATCGGA 60.044 61.111 0.00 0.00 0.00 4.55
363 364 2.021068 ATGTCGCACCTGGAGATCGG 62.021 60.000 0.00 0.00 0.00 4.18
364 365 0.873312 CATGTCGCACCTGGAGATCG 60.873 60.000 0.00 0.00 0.00 3.69
365 366 0.176680 ACATGTCGCACCTGGAGATC 59.823 55.000 0.00 0.00 0.00 2.75
366 367 0.107993 CACATGTCGCACCTGGAGAT 60.108 55.000 0.00 0.00 0.00 2.75
367 368 1.293179 CACATGTCGCACCTGGAGA 59.707 57.895 0.00 0.00 0.00 3.71
368 369 0.246360 TACACATGTCGCACCTGGAG 59.754 55.000 0.00 0.00 0.00 3.86
369 370 0.682292 TTACACATGTCGCACCTGGA 59.318 50.000 0.00 0.00 0.00 3.86
370 371 1.665679 GATTACACATGTCGCACCTGG 59.334 52.381 0.00 0.00 0.00 4.45
371 372 2.621338 AGATTACACATGTCGCACCTG 58.379 47.619 0.00 0.00 0.00 4.00
372 373 4.672587 ATAGATTACACATGTCGCACCT 57.327 40.909 0.00 0.00 0.00 4.00
373 374 5.277345 GGAAATAGATTACACATGTCGCACC 60.277 44.000 0.00 0.00 0.00 5.01
374 375 5.523916 AGGAAATAGATTACACATGTCGCAC 59.476 40.000 0.00 0.00 0.00 5.34
375 376 5.670485 AGGAAATAGATTACACATGTCGCA 58.330 37.500 0.00 0.00 0.00 5.10
376 377 7.622256 GCATAGGAAATAGATTACACATGTCGC 60.622 40.741 0.00 0.00 0.00 5.19
377 378 7.600375 AGCATAGGAAATAGATTACACATGTCG 59.400 37.037 0.00 0.00 0.00 4.35
378 379 8.839310 AGCATAGGAAATAGATTACACATGTC 57.161 34.615 0.00 0.00 0.00 3.06
379 380 9.632638 AAAGCATAGGAAATAGATTACACATGT 57.367 29.630 0.00 0.00 0.00 3.21
391 392 9.362151 CCCAAAGGTATTAAAGCATAGGAAATA 57.638 33.333 0.00 0.00 0.00 1.40
392 393 7.290014 CCCCAAAGGTATTAAAGCATAGGAAAT 59.710 37.037 0.00 0.00 0.00 2.17
393 394 6.609616 CCCCAAAGGTATTAAAGCATAGGAAA 59.390 38.462 0.00 0.00 0.00 3.13
394 395 6.133356 CCCCAAAGGTATTAAAGCATAGGAA 58.867 40.000 0.00 0.00 0.00 3.36
395 396 5.701224 CCCCAAAGGTATTAAAGCATAGGA 58.299 41.667 0.00 0.00 0.00 2.94
396 397 4.280929 GCCCCAAAGGTATTAAAGCATAGG 59.719 45.833 0.00 0.00 38.26 2.57
397 398 4.892934 TGCCCCAAAGGTATTAAAGCATAG 59.107 41.667 0.00 0.00 38.26 2.23
398 399 4.873010 TGCCCCAAAGGTATTAAAGCATA 58.127 39.130 0.00 0.00 38.26 3.14
399 400 3.718723 TGCCCCAAAGGTATTAAAGCAT 58.281 40.909 0.00 0.00 38.26 3.79
400 401 3.176924 TGCCCCAAAGGTATTAAAGCA 57.823 42.857 0.00 0.00 38.26 3.91
401 402 3.513912 ACTTGCCCCAAAGGTATTAAAGC 59.486 43.478 0.00 0.00 38.26 3.51
402 403 6.844097 TTACTTGCCCCAAAGGTATTAAAG 57.156 37.500 0.00 0.00 38.26 1.85
403 404 7.455008 TCAATTACTTGCCCCAAAGGTATTAAA 59.545 33.333 0.00 0.00 38.26 1.52
404 405 6.954684 TCAATTACTTGCCCCAAAGGTATTAA 59.045 34.615 0.00 0.00 38.26 1.40
405 406 6.378848 GTCAATTACTTGCCCCAAAGGTATTA 59.621 38.462 0.00 0.00 38.26 0.98
406 407 5.186992 GTCAATTACTTGCCCCAAAGGTATT 59.813 40.000 0.00 0.00 38.26 1.89
407 408 4.709886 GTCAATTACTTGCCCCAAAGGTAT 59.290 41.667 0.00 0.00 38.26 2.73
408 409 4.083565 GTCAATTACTTGCCCCAAAGGTA 58.916 43.478 0.00 0.00 38.26 3.08
409 410 2.897326 GTCAATTACTTGCCCCAAAGGT 59.103 45.455 0.00 0.00 38.26 3.50
410 411 2.896685 TGTCAATTACTTGCCCCAAAGG 59.103 45.455 0.00 0.00 39.47 3.11
411 412 4.599047 TTGTCAATTACTTGCCCCAAAG 57.401 40.909 0.00 0.00 32.11 2.77
412 413 5.359194 TTTTGTCAATTACTTGCCCCAAA 57.641 34.783 0.00 0.00 32.11 3.28
413 414 5.359194 TTTTTGTCAATTACTTGCCCCAA 57.641 34.783 0.00 0.00 32.11 4.12
546 548 8.871686 AGAAATTTAAAACGCTTCAATCAGTT 57.128 26.923 0.00 0.00 0.00 3.16
568 570 2.026822 GGGCCAGATCTGTCAGAAAGAA 60.027 50.000 21.11 0.00 0.00 2.52
743 746 1.891811 CAGAGGAGCAGAGTGAGTGAA 59.108 52.381 0.00 0.00 0.00 3.18
1052 1083 2.106338 TCAGATTCAGTCACAAGCCCAA 59.894 45.455 0.00 0.00 0.00 4.12
1093 1124 3.970746 ATTTGCCTGCCCTCTGCCC 62.971 63.158 0.00 0.00 40.16 5.36
1136 1167 3.072184 ACATCCTATGAATCTCCTGCCAC 59.928 47.826 0.00 0.00 0.00 5.01
1409 1457 9.897744 CAGTGAGCTTTATTCTTCATTAACAAA 57.102 29.630 0.00 0.00 0.00 2.83
1410 1458 9.066892 ACAGTGAGCTTTATTCTTCATTAACAA 57.933 29.630 0.00 0.00 0.00 2.83
1468 1520 3.655615 ACCCACTCTAAAACACCACAA 57.344 42.857 0.00 0.00 0.00 3.33
1562 1614 3.006967 GCCTCTTTGTCTTGGACTCTACA 59.993 47.826 0.00 0.00 33.15 2.74
1595 1647 5.372373 CTCCTTCTTCAGTTTCTCAACCTT 58.628 41.667 0.00 0.00 32.70 3.50
1724 1776 9.224267 CTTCTTCTCCTTAAGTTCATTGATTGA 57.776 33.333 0.97 0.00 0.00 2.57
1825 1877 3.703052 TGATATCAGCTTGACTCTGCAGA 59.297 43.478 17.19 17.19 0.00 4.26
1895 1947 7.823799 CAGCTTCTTCTTCTCTTCTTTAAGGAT 59.176 37.037 0.00 0.00 33.22 3.24
1945 1997 2.345760 GCACCCATGACCAGCCTTG 61.346 63.158 0.00 0.00 0.00 3.61
2120 2182 6.256053 ACCAAAATGATCTGAAACCATAGGT 58.744 36.000 0.00 0.00 37.65 3.08
2510 4431 1.674817 GCAGGCGCCTAACTGAAACTA 60.675 52.381 32.30 0.00 36.86 2.24
2664 4601 1.019673 GATCATCGCACCACAAGCAT 58.980 50.000 0.00 0.00 0.00 3.79
2669 4606 0.176449 CTCCAGATCATCGCACCACA 59.824 55.000 0.00 0.00 0.00 4.17
2711 4648 0.848305 GCTGAAGCAAACGCAAACAG 59.152 50.000 0.00 0.00 41.59 3.16
2750 4687 2.264794 GGCAGACCACCACTACGG 59.735 66.667 0.00 0.00 42.50 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.