Multiple sequence alignment - TraesCS7D01G407700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G407700 chr7D 100.000 5558 0 0 1 5558 525375393 525380950 0 10264
1 TraesCS7D01G407700 chr7D 90.984 610 50 5 4950 5558 525482167 525482772 0 817
2 TraesCS7D01G407700 chr7D 90.507 611 54 4 4951 5558 221962102 221962711 0 804
3 TraesCS7D01G407700 chr7D 90.594 606 52 5 4955 5558 53755813 53756415 0 798
4 TraesCS7D01G407700 chr7D 90.180 611 57 3 4950 5558 53774064 53774673 0 793
5 TraesCS7D01G407700 chr7A 95.081 3273 120 18 1709 4955 605773826 605777083 0 5114
6 TraesCS7D01G407700 chr7A 94.997 1719 42 21 1 1697 605772067 605773763 0 2658
7 TraesCS7D01G407700 chr7B 96.821 2705 63 11 2261 4955 561750773 561753464 0 4497
8 TraesCS7D01G407700 chr7B 91.828 2325 91 28 1 2262 561748326 561750614 0 3149
9 TraesCS7D01G407700 chr5D 90.499 621 53 5 4943 5558 396135032 396134413 0 815
10 TraesCS7D01G407700 chr6D 90.656 610 48 8 4955 5558 275477924 275478530 0 802
11 TraesCS7D01G407700 chr6B 90.391 614 53 5 4950 5558 717794751 717794139 0 802
12 TraesCS7D01G407700 chr4B 90.228 614 54 5 4950 5558 294407104 294406492 0 797
13 TraesCS7D01G407700 chr2A 90.212 613 55 5 4950 5558 17017835 17018446 0 795


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G407700 chr7D 525375393 525380950 5557 False 10264 10264 100.0000 1 5558 1 chr7D.!!$F4 5557
1 TraesCS7D01G407700 chr7D 525482167 525482772 605 False 817 817 90.9840 4950 5558 1 chr7D.!!$F5 608
2 TraesCS7D01G407700 chr7D 221962102 221962711 609 False 804 804 90.5070 4951 5558 1 chr7D.!!$F3 607
3 TraesCS7D01G407700 chr7D 53755813 53756415 602 False 798 798 90.5940 4955 5558 1 chr7D.!!$F1 603
4 TraesCS7D01G407700 chr7D 53774064 53774673 609 False 793 793 90.1800 4950 5558 1 chr7D.!!$F2 608
5 TraesCS7D01G407700 chr7A 605772067 605777083 5016 False 3886 5114 95.0390 1 4955 2 chr7A.!!$F1 4954
6 TraesCS7D01G407700 chr7B 561748326 561753464 5138 False 3823 4497 94.3245 1 4955 2 chr7B.!!$F1 4954
7 TraesCS7D01G407700 chr5D 396134413 396135032 619 True 815 815 90.4990 4943 5558 1 chr5D.!!$R1 615
8 TraesCS7D01G407700 chr6D 275477924 275478530 606 False 802 802 90.6560 4955 5558 1 chr6D.!!$F1 603
9 TraesCS7D01G407700 chr6B 717794139 717794751 612 True 802 802 90.3910 4950 5558 1 chr6B.!!$R1 608
10 TraesCS7D01G407700 chr4B 294406492 294407104 612 True 797 797 90.2280 4950 5558 1 chr4B.!!$R1 608
11 TraesCS7D01G407700 chr2A 17017835 17018446 611 False 795 795 90.2120 4950 5558 1 chr2A.!!$F1 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
392 405 1.076485 ATTGCATGCCCCTGGTCTC 60.076 57.895 16.68 0.0 0.00 3.36 F
396 409 2.045132 ATGCCCCTGGTCTCCCAT 59.955 61.111 0.00 0.0 40.90 4.00 F
397 410 2.389449 ATGCCCCTGGTCTCCCATG 61.389 63.158 0.00 0.0 40.90 3.66 F
414 427 3.647771 GCCCCTGGTCTCCGGTTT 61.648 66.667 0.00 0.0 0.00 3.27 F
699 721 3.817205 GCCTACCCCCTATCCAGTAGTAC 60.817 56.522 0.00 0.0 32.12 2.73 F
2502 2782 0.386113 GGCCGTTTTTGCAGGTAACA 59.614 50.000 0.00 0.0 41.41 2.41 F
2936 3218 3.581024 TTGTAGGGTAAGTAGTGTGCG 57.419 47.619 0.00 0.0 0.00 5.34 F
3661 3944 1.002888 CTGGTCTCATGCACAGGTTCT 59.997 52.381 0.00 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1994 2097 2.172483 CTCTGTTGAGGTCCCCGGTG 62.172 65.000 0.00 0.00 36.70 4.94 R
2132 2239 2.540515 AGCGATCAAACTATGACCACG 58.459 47.619 0.00 0.00 41.93 4.94 R
2173 2289 3.641437 ACCATTTCCATGTGACAAACG 57.359 42.857 0.00 0.00 0.00 3.60 R
2174 2290 7.826690 ACTAATACCATTTCCATGTGACAAAC 58.173 34.615 0.00 0.00 0.00 2.93 R
2513 2793 2.380084 TTGCTAAGAAGTGCCCTACG 57.620 50.000 0.00 0.00 0.00 3.51 R
3477 3760 1.490910 GGGGAAGTAGCTAAGCCATGT 59.509 52.381 0.00 0.00 0.00 3.21 R
3787 4071 1.814772 CGCATCCTCTCCAGCCTAGG 61.815 65.000 3.67 3.67 0.00 3.02 R
5266 5563 0.171007 GGCCGATTGAACACACATGG 59.829 55.000 0.00 0.00 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
241 242 4.450419 CAGAGAGCACCTGTAGAAAACAAG 59.550 45.833 0.00 0.00 37.74 3.16
242 243 3.142174 AGAGCACCTGTAGAAAACAAGC 58.858 45.455 0.00 0.00 37.74 4.01
243 244 2.878406 GAGCACCTGTAGAAAACAAGCA 59.122 45.455 0.00 0.00 37.74 3.91
244 245 2.880890 AGCACCTGTAGAAAACAAGCAG 59.119 45.455 0.00 0.00 37.74 4.24
376 389 1.547372 GCCTGACTGAATTGTGGCATT 59.453 47.619 0.00 0.00 40.04 3.56
390 403 3.213264 CATTGCATGCCCCTGGTC 58.787 61.111 16.68 0.00 0.00 4.02
391 404 1.380785 CATTGCATGCCCCTGGTCT 60.381 57.895 16.68 0.00 0.00 3.85
392 405 1.076485 ATTGCATGCCCCTGGTCTC 60.076 57.895 16.68 0.00 0.00 3.36
393 406 2.578586 ATTGCATGCCCCTGGTCTCC 62.579 60.000 16.68 0.00 0.00 3.71
394 407 4.512914 GCATGCCCCTGGTCTCCC 62.513 72.222 6.36 0.00 0.00 4.30
395 408 3.016971 CATGCCCCTGGTCTCCCA 61.017 66.667 0.00 0.00 38.87 4.37
396 409 2.045132 ATGCCCCTGGTCTCCCAT 59.955 61.111 0.00 0.00 40.90 4.00
397 410 2.389449 ATGCCCCTGGTCTCCCATG 61.389 63.158 0.00 0.00 40.90 3.66
398 411 4.512914 GCCCCTGGTCTCCCATGC 62.513 72.222 0.00 0.00 40.90 4.06
414 427 3.647771 GCCCCTGGTCTCCGGTTT 61.648 66.667 0.00 0.00 0.00 3.27
699 721 3.817205 GCCTACCCCCTATCCAGTAGTAC 60.817 56.522 0.00 0.00 32.12 2.73
933 977 6.549912 GGAATATACCGGGTGAATACAAAC 57.450 41.667 10.66 0.00 0.00 2.93
934 978 6.056884 GGAATATACCGGGTGAATACAAACA 58.943 40.000 10.66 0.00 0.00 2.83
935 979 6.017687 GGAATATACCGGGTGAATACAAACAC 60.018 42.308 10.66 0.00 36.44 3.32
1728 1831 4.954202 TCGTGTTCACCACTAGGATAATCT 59.046 41.667 0.00 0.00 42.20 2.40
1750 1853 9.890629 AATCTTACTGATTAGATACAACAAGCA 57.109 29.630 0.00 0.00 43.04 3.91
1758 1861 6.633500 TTAGATACAACAAGCAGCAAACTT 57.367 33.333 0.00 0.00 0.00 2.66
2113 2220 6.636454 ACCACTCCATCCATTCTTAAGTAA 57.364 37.500 1.63 0.00 0.00 2.24
2117 2224 6.594159 CACTCCATCCATTCTTAAGTAAACGT 59.406 38.462 1.63 0.00 0.00 3.99
2173 2289 5.499047 GCTAGTACACACAAAACTGTTCAC 58.501 41.667 0.00 0.00 0.00 3.18
2174 2290 4.593597 AGTACACACAAAACTGTTCACG 57.406 40.909 0.00 0.00 0.00 4.35
2192 2308 3.004210 TCACGTTTGTCACATGGAAATGG 59.996 43.478 0.00 0.00 0.00 3.16
2502 2782 0.386113 GGCCGTTTTTGCAGGTAACA 59.614 50.000 0.00 0.00 41.41 2.41
2509 2789 4.696402 CGTTTTTGCAGGTAACACCCTATA 59.304 41.667 7.96 0.00 39.75 1.31
2510 2790 5.181622 CGTTTTTGCAGGTAACACCCTATAA 59.818 40.000 7.96 0.00 39.75 0.98
2513 2793 3.815809 TGCAGGTAACACCCTATAATGC 58.184 45.455 0.00 0.00 39.75 3.56
2690 2970 4.906060 GGTTCCACCCTAGACAGGTATTAT 59.094 45.833 0.00 0.00 40.79 1.28
2754 3036 7.634671 AATCTTGATGCATCACAATGAACTA 57.365 32.000 28.72 10.12 36.36 2.24
2772 3054 5.650703 TGAACTAGGTGTCATGTCGATTCTA 59.349 40.000 0.00 0.00 0.00 2.10
2776 3058 4.938080 AGGTGTCATGTCGATTCTATCAC 58.062 43.478 0.00 0.00 0.00 3.06
2936 3218 3.581024 TTGTAGGGTAAGTAGTGTGCG 57.419 47.619 0.00 0.00 0.00 5.34
3001 3283 7.715265 AGCGATGAACGTATAATTTGATCTT 57.285 32.000 0.00 0.00 44.60 2.40
3036 3318 5.163663 TGTTTGTTTTCTGCAGGTAAGAGTG 60.164 40.000 15.13 0.00 0.00 3.51
3308 3590 4.585879 TGGAGTACATCAAAGCTTTACCC 58.414 43.478 12.25 9.78 0.00 3.69
3464 3747 9.033481 CATTTGCAGTTTCACTAAAAAGATGAA 57.967 29.630 0.00 0.00 0.00 2.57
3477 3760 9.023962 ACTAAAAAGATGAATATTTGACTGCCA 57.976 29.630 0.00 0.00 0.00 4.92
3661 3944 1.002888 CTGGTCTCATGCACAGGTTCT 59.997 52.381 0.00 0.00 0.00 3.01
3713 3996 6.828785 AGTTCTCAAAGCAAAGAAGGTTCTAA 59.171 34.615 0.00 0.00 36.28 2.10
3787 4071 5.296151 TCATCAATACCCTCCACATTCTC 57.704 43.478 0.00 0.00 0.00 2.87
4007 4292 5.160641 GTGTGTTAAAATGGTCGCATCATT 58.839 37.500 0.00 0.00 36.50 2.57
4120 4405 5.127519 TCATGGACCATAATTGCTTTCTTGG 59.872 40.000 6.67 0.00 0.00 3.61
4261 4546 8.425577 AAGACTTGTTCGTCCATATATTCTTG 57.574 34.615 0.00 0.00 34.46 3.02
4281 4568 9.793252 ATTCTTGTATATGTTGATGCTTTTCAC 57.207 29.630 0.00 0.00 0.00 3.18
4282 4569 8.565896 TCTTGTATATGTTGATGCTTTTCACT 57.434 30.769 0.00 0.00 0.00 3.41
4283 4570 8.453320 TCTTGTATATGTTGATGCTTTTCACTG 58.547 33.333 0.00 0.00 0.00 3.66
4285 4572 8.109705 TGTATATGTTGATGCTTTTCACTGTT 57.890 30.769 0.00 0.00 0.00 3.16
4286 4573 8.575589 TGTATATGTTGATGCTTTTCACTGTTT 58.424 29.630 0.00 0.00 0.00 2.83
4405 4700 1.027357 GCTGCAATCGAATGGATGGT 58.973 50.000 2.05 0.00 34.93 3.55
4448 4743 9.579932 AAAAGTTACCTTCTTTCTGATCTTCAT 57.420 29.630 0.00 0.00 34.59 2.57
4449 4744 8.558973 AAGTTACCTTCTTTCTGATCTTCATG 57.441 34.615 0.00 0.00 0.00 3.07
4793 5088 3.002759 AGCTTCAGCAAAACGAAGAAGAC 59.997 43.478 0.75 0.00 45.16 3.01
4796 5091 2.284150 TCAGCAAAACGAAGAAGACACG 59.716 45.455 0.00 0.00 0.00 4.49
4839 5134 5.564550 AGAATAGCCTTTGAAGCTCAGAAA 58.435 37.500 0.00 0.00 41.83 2.52
4872 5167 6.778108 TGATGATGTGATTTGTGAAAGATCG 58.222 36.000 0.00 0.00 0.00 3.69
4888 5183 4.437682 AGATCGGCTTGATTTATTGGGA 57.562 40.909 0.00 0.00 37.47 4.37
5071 5366 4.084888 GTCGGCGGACGCTTTTGG 62.085 66.667 16.72 1.89 43.86 3.28
5075 5370 1.745489 GGCGGACGCTTTTGGAGAT 60.745 57.895 16.72 0.00 41.60 2.75
5175 5471 1.040893 TAGAGCCTCGGGATTCGCAA 61.041 55.000 1.41 0.00 39.05 4.85
5206 5502 1.067974 TGAGGAACAGCGAAGAACGAA 59.932 47.619 0.00 0.00 45.77 3.85
5216 5512 5.007724 ACAGCGAAGAACGAAAGAGAAAAAT 59.992 36.000 0.00 0.00 45.77 1.82
5240 5537 6.338146 TGGTGGAGAGATAAAACGTAGATTG 58.662 40.000 0.00 0.00 0.00 2.67
5268 5565 9.661563 AAAGTAGTATATTGATTTGTTCGACCA 57.338 29.630 0.00 0.00 0.00 4.02
5292 5591 1.375523 GTTCAATCGGCCGTCACCT 60.376 57.895 27.15 3.03 0.00 4.00
5313 5612 4.223032 CCTCCAACATATATAAGAGGCGGT 59.777 45.833 6.59 0.00 34.92 5.68
5471 5775 0.307760 GGGCCGTCGAATTTGCATAG 59.692 55.000 0.00 0.00 0.00 2.23
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
241 242 2.880890 ACCATGTTCTGTTCTGTTCTGC 59.119 45.455 0.00 0.00 0.00 4.26
242 243 4.576053 TCAACCATGTTCTGTTCTGTTCTG 59.424 41.667 0.00 0.00 0.00 3.02
243 244 4.780815 TCAACCATGTTCTGTTCTGTTCT 58.219 39.130 0.00 0.00 0.00 3.01
244 245 5.695851 ATCAACCATGTTCTGTTCTGTTC 57.304 39.130 0.00 0.00 0.00 3.18
357 370 2.673043 GCAATGCCACAATTCAGTCAGG 60.673 50.000 0.00 0.00 0.00 3.86
376 389 3.731728 GGAGACCAGGGGCATGCA 61.732 66.667 21.36 0.00 0.00 3.96
388 401 3.017581 ACCAGGGGCATGGGAGAC 61.018 66.667 12.07 0.00 45.25 3.36
389 402 2.692368 GACCAGGGGCATGGGAGA 60.692 66.667 12.07 0.00 45.25 3.71
390 403 2.693864 AGACCAGGGGCATGGGAG 60.694 66.667 12.07 0.00 45.25 4.30
391 404 2.692368 GAGACCAGGGGCATGGGA 60.692 66.667 12.07 0.00 45.25 4.37
392 405 3.813724 GGAGACCAGGGGCATGGG 61.814 72.222 12.07 0.00 45.25 4.00
393 406 4.181010 CGGAGACCAGGGGCATGG 62.181 72.222 6.45 6.45 46.47 3.66
394 407 4.181010 CCGGAGACCAGGGGCATG 62.181 72.222 0.00 0.00 0.00 4.06
395 408 4.741239 ACCGGAGACCAGGGGCAT 62.741 66.667 9.46 0.00 0.00 4.40
396 409 4.974438 AACCGGAGACCAGGGGCA 62.974 66.667 9.46 0.00 0.00 5.36
397 410 3.623703 GAAACCGGAGACCAGGGGC 62.624 68.421 9.46 0.00 0.00 5.80
398 411 1.918800 AGAAACCGGAGACCAGGGG 60.919 63.158 9.46 0.00 0.00 4.79
681 703 2.138542 TCGTACTACTGGATAGGGGGT 58.861 52.381 0.00 0.00 34.89 4.95
699 721 2.120232 CCACGCTCTGCTAGTAATTCG 58.880 52.381 0.00 0.00 0.00 3.34
923 967 3.628032 TGCTCGTTTGGTGTTTGTATTCA 59.372 39.130 0.00 0.00 0.00 2.57
924 968 4.024387 TCTGCTCGTTTGGTGTTTGTATTC 60.024 41.667 0.00 0.00 0.00 1.75
925 969 3.880490 TCTGCTCGTTTGGTGTTTGTATT 59.120 39.130 0.00 0.00 0.00 1.89
926 970 3.472652 TCTGCTCGTTTGGTGTTTGTAT 58.527 40.909 0.00 0.00 0.00 2.29
927 971 2.869801 CTCTGCTCGTTTGGTGTTTGTA 59.130 45.455 0.00 0.00 0.00 2.41
929 973 1.597937 GCTCTGCTCGTTTGGTGTTTG 60.598 52.381 0.00 0.00 0.00 2.93
930 974 0.663153 GCTCTGCTCGTTTGGTGTTT 59.337 50.000 0.00 0.00 0.00 2.83
931 975 0.179045 AGCTCTGCTCGTTTGGTGTT 60.179 50.000 0.00 0.00 30.62 3.32
932 976 0.179045 AAGCTCTGCTCGTTTGGTGT 60.179 50.000 0.00 0.00 38.25 4.16
933 977 0.514691 GAAGCTCTGCTCGTTTGGTG 59.485 55.000 0.00 0.00 38.25 4.17
934 978 0.394565 AGAAGCTCTGCTCGTTTGGT 59.605 50.000 0.00 0.00 38.25 3.67
935 979 0.795085 CAGAAGCTCTGCTCGTTTGG 59.205 55.000 0.00 0.00 38.25 3.28
1728 1831 7.102993 TGCTGCTTGTTGTATCTAATCAGTAA 58.897 34.615 0.00 0.00 0.00 2.24
1994 2097 2.172483 CTCTGTTGAGGTCCCCGGTG 62.172 65.000 0.00 0.00 36.70 4.94
2085 2191 3.960571 AGAATGGATGGAGTGGTTTCTG 58.039 45.455 0.00 0.00 0.00 3.02
2117 2224 7.879160 ACTATGACCACGTTTATCCTAAAACAA 59.121 33.333 0.00 0.00 38.93 2.83
2132 2239 2.540515 AGCGATCAAACTATGACCACG 58.459 47.619 0.00 0.00 41.93 4.94
2173 2289 3.641437 ACCATTTCCATGTGACAAACG 57.359 42.857 0.00 0.00 0.00 3.60
2174 2290 7.826690 ACTAATACCATTTCCATGTGACAAAC 58.173 34.615 0.00 0.00 0.00 2.93
2513 2793 2.380084 TTGCTAAGAAGTGCCCTACG 57.620 50.000 0.00 0.00 0.00 3.51
2738 3020 4.002982 GACACCTAGTTCATTGTGATGCA 58.997 43.478 0.00 0.00 33.14 3.96
2754 3036 4.646945 AGTGATAGAATCGACATGACACCT 59.353 41.667 0.00 0.00 0.00 4.00
2772 3054 4.524714 CCATCGTACCTATCCAAGAGTGAT 59.475 45.833 0.00 0.00 0.00 3.06
2776 3058 2.894126 AGCCATCGTACCTATCCAAGAG 59.106 50.000 0.00 0.00 0.00 2.85
3335 3617 2.303163 AAACATGCGCGTAGTATGGA 57.697 45.000 8.43 0.00 45.57 3.41
3477 3760 1.490910 GGGGAAGTAGCTAAGCCATGT 59.509 52.381 0.00 0.00 0.00 3.21
3613 3896 1.760613 TCTGTTTCTTGACCGGTCTGT 59.239 47.619 33.39 0.00 0.00 3.41
3661 3944 6.433847 TCTCTTCTGTTAGGTTCAATTCCA 57.566 37.500 0.00 0.00 0.00 3.53
3713 3996 9.337091 GCACAGATACGTAATGTTTACAAAAAT 57.663 29.630 12.62 0.00 0.00 1.82
3773 4057 1.972207 GCCTAGGAGAATGTGGAGGGT 60.972 57.143 14.75 0.00 0.00 4.34
3787 4071 1.814772 CGCATCCTCTCCAGCCTAGG 61.815 65.000 3.67 3.67 0.00 3.02
3865 4149 8.175716 GTGGAATTTCAGCTGTTGTATTAGTAC 58.824 37.037 14.67 5.97 0.00 2.73
4007 4292 5.084818 TGCAAAGAGAAGGTCGAATGATA 57.915 39.130 0.00 0.00 0.00 2.15
4120 4405 7.945134 ACTTCAAGAATCAATATTATGGCACC 58.055 34.615 0.00 0.00 0.00 5.01
4261 4546 8.970691 AAACAGTGAAAAGCATCAACATATAC 57.029 30.769 0.00 0.00 0.00 1.47
4405 4700 4.855340 ACTTTTGACTGGAACAAGGAGAA 58.145 39.130 0.00 0.00 38.70 2.87
4448 4743 7.148641 ACAAAAATCAGTTTTACACACACACA 58.851 30.769 0.00 0.00 37.32 3.72
4449 4744 7.575332 ACAAAAATCAGTTTTACACACACAC 57.425 32.000 0.00 0.00 37.32 3.82
4610 4905 6.183360 GGCTTCTATGAGGAAAACATGTAACC 60.183 42.308 0.00 3.17 0.00 2.85
4773 5068 4.274865 GTGTCTTCTTCGTTTTGCTGAAG 58.725 43.478 0.00 0.00 42.30 3.02
4793 5088 6.863645 TCTTTCATTTCTACTTGAGTCTCGTG 59.136 38.462 0.00 0.00 0.00 4.35
4839 5134 8.795513 TCACAAATCACATCATCAAACACTTAT 58.204 29.630 0.00 0.00 0.00 1.73
5062 5357 1.804748 GTTTCGGATCTCCAAAAGCGT 59.195 47.619 0.00 0.00 35.14 5.07
5071 5366 1.814169 GTGCGGGGTTTCGGATCTC 60.814 63.158 0.00 0.00 32.32 2.75
5075 5370 4.629523 GGTGTGCGGGGTTTCGGA 62.630 66.667 0.00 0.00 0.00 4.55
5206 5502 8.797438 GTTTTATCTCTCCACCATTTTTCTCTT 58.203 33.333 0.00 0.00 0.00 2.85
5216 5512 6.153851 TCAATCTACGTTTTATCTCTCCACCA 59.846 38.462 0.00 0.00 0.00 4.17
5266 5563 0.171007 GGCCGATTGAACACACATGG 59.829 55.000 0.00 0.00 0.00 3.66
5267 5564 0.179192 CGGCCGATTGAACACACATG 60.179 55.000 24.07 0.00 0.00 3.21
5268 5565 0.605319 ACGGCCGATTGAACACACAT 60.605 50.000 35.90 0.00 0.00 3.21
5292 5591 5.547465 CAACCGCCTCTTATATATGTTGGA 58.453 41.667 0.00 0.00 0.00 3.53
5313 5612 4.344679 TCTTTACTTGTACGGGAAGTCCAA 59.655 41.667 0.67 0.00 35.30 3.53
5413 5717 3.333680 AGAAGTTTGGGCCAGATTTAGGA 59.666 43.478 6.23 0.00 0.00 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.