Multiple sequence alignment - TraesCS7D01G407100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G407100 chr7D 100.000 2994 0 0 1 2994 524327340 524324347 0.000000e+00 5529.0
1 TraesCS7D01G407100 chr7D 84.158 101 14 2 352 451 43383062 43383161 2.460000e-16 97.1
2 TraesCS7D01G407100 chr7A 90.296 2226 131 38 574 2755 604397729 604395545 0.000000e+00 2835.0
3 TraesCS7D01G407100 chr7A 92.614 176 6 3 2729 2901 604395508 604395337 2.310000e-61 246.0
4 TraesCS7D01G407100 chr7A 92.941 85 6 0 37 121 604400625 604400541 1.130000e-24 124.0
5 TraesCS7D01G407100 chr7A 87.097 93 5 3 2902 2994 604395308 604395223 6.830000e-17 99.0
6 TraesCS7D01G407100 chr7B 88.278 2090 161 45 697 2755 560533030 560530994 0.000000e+00 2425.0
7 TraesCS7D01G407100 chr7B 94.798 173 5 2 2729 2901 560530957 560530789 1.770000e-67 267.0
8 TraesCS7D01G407100 chr7B 81.385 231 30 6 192 412 560535049 560534822 3.070000e-40 176.0
9 TraesCS7D01G407100 chr7B 88.764 89 7 2 1 89 560804627 560804712 4.080000e-19 106.0
10 TraesCS7D01G407100 chr7B 80.292 137 24 2 267 402 9017057 9016923 1.900000e-17 100.0
11 TraesCS7D01G407100 chr6A 77.407 270 38 18 267 530 2407518 2407770 4.020000e-29 139.0
12 TraesCS7D01G407100 chr2D 80.357 168 26 4 267 431 601975697 601975860 1.460000e-23 121.0
13 TraesCS7D01G407100 chr2D 79.333 150 27 4 342 489 394249675 394249528 5.280000e-18 102.0
14 TraesCS7D01G407100 chr5A 79.141 163 29 4 267 427 681862102 681862261 1.130000e-19 108.0
15 TraesCS7D01G407100 chr2A 89.286 84 8 1 342 425 532162273 532162191 1.470000e-18 104.0
16 TraesCS7D01G407100 chr1B 80.303 132 22 4 372 501 172419848 172419977 2.460000e-16 97.1
17 TraesCS7D01G407100 chr1B 75.349 215 37 10 267 479 136644972 136644772 4.110000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G407100 chr7D 524324347 524327340 2993 True 5529 5529 100.000000 1 2994 1 chr7D.!!$R1 2993
1 TraesCS7D01G407100 chr7A 604395223 604400625 5402 True 826 2835 90.737000 37 2994 4 chr7A.!!$R1 2957
2 TraesCS7D01G407100 chr7B 560530789 560535049 4260 True 956 2425 88.153667 192 2901 3 chr7B.!!$R2 2709

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
882 4872 0.11456 TAGCGAGGATAAGGGGAGGG 59.885 60.0 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2869 6976 0.107831 TTAGTTTGGTGCCTGCGACT 59.892 50.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 6.914665 TCCTCAATTGTCCTATGATCCATTT 58.085 36.000 5.13 0.00 0.00 2.32
106 107 9.865321 ATTTCTTTAAATGACATGGATGAACAG 57.135 29.630 0.00 0.00 33.97 3.16
107 108 8.408043 TTCTTTAAATGACATGGATGAACAGT 57.592 30.769 0.00 0.00 0.00 3.55
110 111 5.381174 AAATGACATGGATGAACAGTGTG 57.619 39.130 0.00 0.00 0.00 3.82
125 155 8.862325 TGAACAGTGTGACCATAGAAAAATAT 57.138 30.769 0.00 0.00 0.00 1.28
126 156 8.946085 TGAACAGTGTGACCATAGAAAAATATC 58.054 33.333 0.00 0.00 0.00 1.63
176 206 8.203485 TCATATTTCCTACAAAATCAAATGGGC 58.797 33.333 0.00 0.00 31.50 5.36
177 207 4.817318 TTCCTACAAAATCAAATGGGCC 57.183 40.909 0.00 0.00 0.00 5.80
178 208 3.103742 TCCTACAAAATCAAATGGGCCC 58.896 45.455 17.59 17.59 0.00 5.80
179 209 3.106827 CCTACAAAATCAAATGGGCCCT 58.893 45.455 25.70 5.48 0.00 5.19
180 210 3.519107 CCTACAAAATCAAATGGGCCCTT 59.481 43.478 25.70 15.22 0.00 3.95
181 211 4.019411 CCTACAAAATCAAATGGGCCCTTT 60.019 41.667 25.70 21.12 0.00 3.11
182 212 4.451891 ACAAAATCAAATGGGCCCTTTT 57.548 36.364 26.08 26.08 0.00 2.27
183 213 4.802307 ACAAAATCAAATGGGCCCTTTTT 58.198 34.783 28.49 21.69 0.00 1.94
184 214 5.946486 ACAAAATCAAATGGGCCCTTTTTA 58.054 33.333 28.49 22.58 0.00 1.52
185 215 6.368805 ACAAAATCAAATGGGCCCTTTTTAA 58.631 32.000 28.49 20.73 0.00 1.52
186 216 6.836007 ACAAAATCAAATGGGCCCTTTTTAAA 59.164 30.769 28.49 18.61 0.00 1.52
187 217 7.014134 ACAAAATCAAATGGGCCCTTTTTAAAG 59.986 33.333 28.49 18.84 35.79 1.85
314 355 6.172630 TGCTCACATACACAATCATACACTT 58.827 36.000 0.00 0.00 0.00 3.16
317 358 7.515215 GCTCACATACACAATCATACACTTACG 60.515 40.741 0.00 0.00 0.00 3.18
327 368 5.585820 TCATACACTTACGCCTATGAACA 57.414 39.130 0.00 0.00 0.00 3.18
331 373 5.333299 ACACTTACGCCTATGAACACATA 57.667 39.130 0.00 0.00 0.00 2.29
335 377 2.536365 ACGCCTATGAACACATACACG 58.464 47.619 0.00 0.00 0.00 4.49
338 380 2.872245 GCCTATGAACACATACACGCAT 59.128 45.455 0.00 0.00 0.00 4.73
346 388 5.302313 TGAACACATACACGCATACCCTATA 59.698 40.000 0.00 0.00 0.00 1.31
347 389 5.130292 ACACATACACGCATACCCTATAC 57.870 43.478 0.00 0.00 0.00 1.47
348 390 4.021719 ACACATACACGCATACCCTATACC 60.022 45.833 0.00 0.00 0.00 2.73
355 397 2.102588 CGCATACCCTATACCCCTATGC 59.897 54.545 0.00 0.00 37.43 3.14
356 398 2.438392 GCATACCCTATACCCCTATGCC 59.562 54.545 0.00 0.00 35.61 4.40
381 423 1.299468 CGAGATACTGAGCCGGCAC 60.299 63.158 31.54 24.60 0.00 5.01
412 454 5.857268 TGAGATTGACAAAGTCATCACAGA 58.143 37.500 0.12 0.00 42.40 3.41
413 455 5.698089 TGAGATTGACAAAGTCATCACAGAC 59.302 40.000 0.12 0.00 42.40 3.51
424 466 0.733729 ATCACAGACGCCTCGTAGTC 59.266 55.000 0.00 0.00 41.37 2.59
436 478 1.950828 TCGTAGTCGAGGGAGACATC 58.049 55.000 0.00 0.00 43.24 3.06
438 480 1.600013 CGTAGTCGAGGGAGACATCTG 59.400 57.143 0.00 0.00 43.24 2.90
459 501 6.108687 TCTGCTCTCATTGAACAAATATCGT 58.891 36.000 0.00 0.00 0.00 3.73
460 502 6.256539 TCTGCTCTCATTGAACAAATATCGTC 59.743 38.462 0.00 0.00 0.00 4.20
462 504 5.232202 GCTCTCATTGAACAAATATCGTCGA 59.768 40.000 0.00 0.00 0.00 4.20
463 505 6.561166 GCTCTCATTGAACAAATATCGTCGAG 60.561 42.308 0.00 0.00 0.00 4.04
467 509 6.255670 TCATTGAACAAATATCGTCGAGAAGG 59.744 38.462 0.00 0.00 0.00 3.46
524 2934 5.288543 CTAAGCCTAGCACTTGAACTTTG 57.711 43.478 6.52 0.00 0.00 2.77
525 2935 2.508526 AGCCTAGCACTTGAACTTTGG 58.491 47.619 0.00 0.00 0.00 3.28
559 2969 6.397272 TCCACCACAAAGAAAATAATCATGC 58.603 36.000 0.00 0.00 0.00 4.06
563 2973 5.745294 CCACAAAGAAAATAATCATGCGAGG 59.255 40.000 0.00 0.00 0.00 4.63
564 2974 6.324819 CACAAAGAAAATAATCATGCGAGGT 58.675 36.000 0.00 0.00 0.00 3.85
565 2975 7.415095 CCACAAAGAAAATAATCATGCGAGGTA 60.415 37.037 0.00 0.00 0.00 3.08
566 2976 7.429340 CACAAAGAAAATAATCATGCGAGGTAC 59.571 37.037 0.00 0.00 0.00 3.34
567 2977 6.619801 AAGAAAATAATCATGCGAGGTACC 57.380 37.500 2.73 2.73 0.00 3.34
568 2978 5.063880 AGAAAATAATCATGCGAGGTACCC 58.936 41.667 8.74 0.00 0.00 3.69
569 2979 4.706842 AAATAATCATGCGAGGTACCCT 57.293 40.909 8.74 0.00 36.03 4.34
570 2980 3.963428 ATAATCATGCGAGGTACCCTC 57.037 47.619 8.74 4.80 46.44 4.30
773 4763 3.112075 CACAGCCCACGCACGTAG 61.112 66.667 0.00 0.00 37.52 3.51
775 4765 2.270257 ACAGCCCACGCACGTAGTA 61.270 57.895 0.00 0.00 41.61 1.82
802 4792 3.553095 AAAGCGTCTCCCTGCCCAC 62.553 63.158 0.00 0.00 0.00 4.61
879 4869 4.686396 CGAGATATAGCGAGGATAAGGGGA 60.686 50.000 0.00 0.00 0.00 4.81
880 4870 4.798882 AGATATAGCGAGGATAAGGGGAG 58.201 47.826 0.00 0.00 0.00 4.30
881 4871 2.239681 ATAGCGAGGATAAGGGGAGG 57.760 55.000 0.00 0.00 0.00 4.30
882 4872 0.114560 TAGCGAGGATAAGGGGAGGG 59.885 60.000 0.00 0.00 0.00 4.30
982 4981 4.441695 TCCTGAGCGAGCCAAGCG 62.442 66.667 0.00 0.00 40.04 4.68
1005 5008 1.602851 CTCTCCGTCGATCGTATGGTT 59.397 52.381 15.94 0.00 37.94 3.67
1080 5086 2.747855 CCTTTGCCGGCTCAGGAC 60.748 66.667 30.69 2.39 0.00 3.85
1161 5173 3.397613 GAAGAGCGCAGGCCAGGAT 62.398 63.158 11.47 0.00 41.24 3.24
1390 5405 1.867919 CGAGACAGGTCGGTCAGCTT 61.868 60.000 4.29 0.00 40.29 3.74
1392 5407 1.115930 AGACAGGTCGGTCAGCTTGT 61.116 55.000 4.29 0.00 40.29 3.16
1393 5408 0.946221 GACAGGTCGGTCAGCTTGTG 60.946 60.000 0.00 0.00 37.73 3.33
1394 5409 1.669115 CAGGTCGGTCAGCTTGTGG 60.669 63.158 0.00 0.00 0.00 4.17
1395 5410 2.140792 AGGTCGGTCAGCTTGTGGT 61.141 57.895 0.00 0.00 0.00 4.16
1396 5411 1.227853 GGTCGGTCAGCTTGTGGTT 60.228 57.895 0.00 0.00 0.00 3.67
1397 5412 0.034337 GGTCGGTCAGCTTGTGGTTA 59.966 55.000 0.00 0.00 0.00 2.85
1399 5414 1.045407 TCGGTCAGCTTGTGGTTACT 58.955 50.000 0.00 0.00 0.00 2.24
1400 5415 2.029649 GTCGGTCAGCTTGTGGTTACTA 60.030 50.000 0.00 0.00 0.00 1.82
1401 5416 2.629137 TCGGTCAGCTTGTGGTTACTAA 59.371 45.455 0.00 0.00 0.00 2.24
1403 5418 3.185797 CGGTCAGCTTGTGGTTACTAAAC 59.814 47.826 0.00 0.00 34.66 2.01
1405 5420 4.024302 GGTCAGCTTGTGGTTACTAAACAC 60.024 45.833 9.70 9.70 37.34 3.32
1406 5421 4.573201 GTCAGCTTGTGGTTACTAAACACA 59.427 41.667 14.55 14.55 37.34 3.72
1408 5423 4.574828 CAGCTTGTGGTTACTAAACACACT 59.425 41.667 17.60 10.73 37.52 3.55
1409 5424 5.756347 CAGCTTGTGGTTACTAAACACACTA 59.244 40.000 17.60 5.39 37.52 2.74
1410 5425 6.259167 CAGCTTGTGGTTACTAAACACACTAA 59.741 38.462 17.60 4.75 37.52 2.24
1411 5426 6.996282 AGCTTGTGGTTACTAAACACACTAAT 59.004 34.615 17.60 3.90 37.52 1.73
1413 5428 8.440833 GCTTGTGGTTACTAAACACACTAATAG 58.559 37.037 17.60 13.20 37.52 1.73
1414 5429 7.894376 TGTGGTTACTAAACACACTAATAGC 57.106 36.000 14.55 0.00 37.52 2.97
1415 5430 7.673180 TGTGGTTACTAAACACACTAATAGCT 58.327 34.615 14.55 0.00 37.52 3.32
1416 5431 8.152246 TGTGGTTACTAAACACACTAATAGCTT 58.848 33.333 14.55 0.00 37.52 3.74
1417 5432 9.643693 GTGGTTACTAAACACACTAATAGCTTA 57.356 33.333 11.48 0.00 37.34 3.09
1418 5433 9.865321 TGGTTACTAAACACACTAATAGCTTAG 57.135 33.333 0.00 0.00 37.83 2.18
1419 5434 8.815189 GGTTACTAAACACACTAATAGCTTAGC 58.185 37.037 0.00 0.00 36.63 3.09
1421 5436 9.582431 TTACTAAACACACTAATAGCTTAGCTG 57.418 33.333 17.97 2.06 40.10 4.24
1423 5438 4.471904 ACACACTAATAGCTTAGCTGCA 57.528 40.909 17.97 0.00 40.10 4.41
1424 5439 5.028549 ACACACTAATAGCTTAGCTGCAT 57.971 39.130 17.97 0.00 40.10 3.96
1428 5443 6.479990 CACACTAATAGCTTAGCTGCATGTAA 59.520 38.462 17.97 0.00 40.10 2.41
1432 5447 9.209175 ACTAATAGCTTAGCTGCATGTAATAAC 57.791 33.333 17.97 0.00 40.10 1.89
1437 5452 5.471456 GCTTAGCTGCATGTAATAACCATCT 59.529 40.000 1.02 0.00 0.00 2.90
1439 5454 5.039920 AGCTGCATGTAATAACCATCTGA 57.960 39.130 1.02 0.00 0.00 3.27
1440 5455 5.628130 AGCTGCATGTAATAACCATCTGAT 58.372 37.500 1.02 0.00 0.00 2.90
1441 5456 5.704515 AGCTGCATGTAATAACCATCTGATC 59.295 40.000 1.02 0.00 0.00 2.92
1442 5457 5.471116 GCTGCATGTAATAACCATCTGATCA 59.529 40.000 0.00 0.00 0.00 2.92
1443 5458 6.016860 GCTGCATGTAATAACCATCTGATCAA 60.017 38.462 0.00 0.00 0.00 2.57
1444 5459 7.309012 GCTGCATGTAATAACCATCTGATCAAT 60.309 37.037 0.00 0.00 0.00 2.57
1445 5460 7.878036 TGCATGTAATAACCATCTGATCAATG 58.122 34.615 0.00 4.09 0.00 2.82
1446 5461 6.805271 GCATGTAATAACCATCTGATCAATGC 59.195 38.462 0.00 0.57 0.00 3.56
1448 5463 7.734924 TGTAATAACCATCTGATCAATGCTC 57.265 36.000 0.00 0.00 0.00 4.26
1449 5464 7.512130 TGTAATAACCATCTGATCAATGCTCT 58.488 34.615 0.00 0.00 0.00 4.09
1451 5466 7.976135 AATAACCATCTGATCAATGCTCTAC 57.024 36.000 0.00 0.00 0.00 2.59
1452 5467 3.987547 ACCATCTGATCAATGCTCTACG 58.012 45.455 0.00 0.00 0.00 3.51
1453 5468 3.638627 ACCATCTGATCAATGCTCTACGA 59.361 43.478 0.00 0.00 0.00 3.43
1454 5469 4.100035 ACCATCTGATCAATGCTCTACGAA 59.900 41.667 0.00 0.00 0.00 3.85
1456 5471 5.699915 CCATCTGATCAATGCTCTACGAATT 59.300 40.000 0.00 0.00 0.00 2.17
1457 5472 6.870439 CCATCTGATCAATGCTCTACGAATTA 59.130 38.462 0.00 0.00 0.00 1.40
1459 5474 7.043961 TCTGATCAATGCTCTACGAATTAGT 57.956 36.000 0.00 0.00 0.00 2.24
1460 5475 8.166422 TCTGATCAATGCTCTACGAATTAGTA 57.834 34.615 0.00 0.00 0.00 1.82
1461 5476 8.076781 TCTGATCAATGCTCTACGAATTAGTAC 58.923 37.037 0.00 0.00 0.00 2.73
1462 5477 7.941919 TGATCAATGCTCTACGAATTAGTACT 58.058 34.615 0.00 0.00 0.00 2.73
1463 5478 8.076781 TGATCAATGCTCTACGAATTAGTACTC 58.923 37.037 0.00 0.00 0.00 2.59
1464 5479 7.329588 TCAATGCTCTACGAATTAGTACTCA 57.670 36.000 0.00 0.00 0.00 3.41
1465 5480 7.941919 TCAATGCTCTACGAATTAGTACTCAT 58.058 34.615 0.00 0.00 0.00 2.90
1466 5481 9.063615 TCAATGCTCTACGAATTAGTACTCATA 57.936 33.333 0.00 0.00 0.00 2.15
1467 5482 9.678941 CAATGCTCTACGAATTAGTACTCATAA 57.321 33.333 0.00 0.00 0.00 1.90
1637 5652 0.467844 TGCAGCTTTCTCCAAGGCAA 60.468 50.000 0.00 0.00 37.07 4.52
1638 5653 0.675633 GCAGCTTTCTCCAAGGCAAA 59.324 50.000 0.00 0.00 37.07 3.68
1639 5654 1.069049 GCAGCTTTCTCCAAGGCAAAA 59.931 47.619 0.00 0.00 37.07 2.44
1640 5655 2.747436 CAGCTTTCTCCAAGGCAAAAC 58.253 47.619 0.00 0.00 37.07 2.43
1641 5656 1.688735 AGCTTTCTCCAAGGCAAAACC 59.311 47.619 0.00 0.00 37.07 3.27
1642 5657 1.270305 GCTTTCTCCAAGGCAAAACCC 60.270 52.381 0.00 0.00 40.58 4.11
1643 5658 2.319844 CTTTCTCCAAGGCAAAACCCT 58.680 47.619 0.00 0.00 40.58 4.34
1652 5667 4.828072 AAGGCAAAACCCTTGTAACAAA 57.172 36.364 0.00 0.00 43.43 2.83
1666 5681 7.647715 CCCTTGTAACAAAAACACAGATACTTG 59.352 37.037 0.00 0.00 0.00 3.16
1669 5684 6.970043 TGTAACAAAAACACAGATACTTGCAC 59.030 34.615 0.00 0.00 0.00 4.57
1670 5685 5.574891 ACAAAAACACAGATACTTGCACA 57.425 34.783 0.00 0.00 0.00 4.57
1676 5691 3.809832 ACACAGATACTTGCACACAGAAC 59.190 43.478 0.00 0.00 0.00 3.01
1678 5693 4.060900 ACAGATACTTGCACACAGAACTG 58.939 43.478 0.00 0.00 0.00 3.16
1679 5694 4.060900 CAGATACTTGCACACAGAACTGT 58.939 43.478 1.32 1.32 46.17 3.55
1693 5717 5.230726 CACAGAACTGTTTTGACTGCAATTC 59.769 40.000 16.82 0.00 42.83 2.17
1696 5720 4.734398 ACTGTTTTGACTGCAATTCCAA 57.266 36.364 0.00 0.00 33.25 3.53
1740 5764 1.598924 GCAACAGTTCAGCTCAAGCAC 60.599 52.381 4.59 0.00 45.16 4.40
1741 5765 1.002033 CAACAGTTCAGCTCAAGCACC 60.002 52.381 4.59 0.00 45.16 5.01
1753 5777 0.605589 CAAGCACCGAGGAGAAGAGT 59.394 55.000 0.00 0.00 0.00 3.24
1756 5780 1.967535 CACCGAGGAGAAGAGTGCA 59.032 57.895 0.00 0.00 0.00 4.57
1759 5783 0.108898 CCGAGGAGAAGAGTGCAGTG 60.109 60.000 0.00 0.00 0.00 3.66
1821 5845 7.548097 TCAGGTATGTACTTCTTCATCAGTTC 58.452 38.462 0.00 0.00 0.00 3.01
1871 5904 1.212616 GGTGATCATCTCGCTTTCCG 58.787 55.000 0.00 0.00 34.65 4.30
1881 5914 1.597663 CTCGCTTTCCGTTCTTGTTGT 59.402 47.619 0.00 0.00 38.35 3.32
1924 5957 1.081242 GTCCAAGTCGGCGTTCGTA 60.081 57.895 6.85 0.00 40.32 3.43
1930 5963 1.226101 GTCGGCGTTCGTATCGTCA 60.226 57.895 6.85 0.00 40.32 4.35
2045 6081 5.602561 TGACGAGTACATACCTACCTACCTA 59.397 44.000 0.00 0.00 0.00 3.08
2046 6082 5.859495 ACGAGTACATACCTACCTACCTAC 58.141 45.833 0.00 0.00 0.00 3.18
2047 6083 5.221742 ACGAGTACATACCTACCTACCTACC 60.222 48.000 0.00 0.00 0.00 3.18
2048 6084 5.012561 CGAGTACATACCTACCTACCTACCT 59.987 48.000 0.00 0.00 0.00 3.08
2110 6146 3.966665 TCTCCATGCCACTGATACATGTA 59.033 43.478 8.27 8.27 39.62 2.29
2112 6148 4.898320 TCCATGCCACTGATACATGTATC 58.102 43.478 30.80 30.80 39.62 2.24
2122 6158 8.462016 CCACTGATACATGTATCGATTCTATCA 58.538 37.037 31.03 17.74 43.64 2.15
2170 6206 6.094048 ACAATCTGTTAGAATCACAATTCCCG 59.906 38.462 0.00 0.00 41.97 5.14
2331 6370 1.154205 GCACCGAGATTCCGATGTGG 61.154 60.000 0.00 0.00 40.09 4.17
2399 6438 4.660168 AGCCATCACAAATCAAACTCTCT 58.340 39.130 0.00 0.00 0.00 3.10
2401 6440 4.436584 GCCATCACAAATCAAACTCTCTCG 60.437 45.833 0.00 0.00 0.00 4.04
2639 6678 5.734720 ACATTACAAGACATCGGAACTGAT 58.265 37.500 0.00 0.00 0.00 2.90
2697 6736 8.739972 GTTCTCCATGAATATGTACAAAAAGGT 58.260 33.333 0.00 0.00 36.99 3.50
2867 6974 1.900245 ACACATCAAGCATGCACAGA 58.100 45.000 21.98 14.51 35.65 3.41
2868 6975 1.538512 ACACATCAAGCATGCACAGAC 59.461 47.619 21.98 0.00 35.65 3.51
2869 6976 1.538075 CACATCAAGCATGCACAGACA 59.462 47.619 21.98 0.00 35.65 3.41
2870 6977 1.810755 ACATCAAGCATGCACAGACAG 59.189 47.619 21.98 12.34 35.65 3.51
2871 6978 1.810755 CATCAAGCATGCACAGACAGT 59.189 47.619 21.98 0.00 0.00 3.55
2872 6979 1.516161 TCAAGCATGCACAGACAGTC 58.484 50.000 21.98 0.00 0.00 3.51
2905 7040 1.632018 TAATGCAAGAGGACCCGGGG 61.632 60.000 27.92 12.73 0.00 5.73
2914 7049 3.090532 GACCCGGGGCCTCTCAAT 61.091 66.667 27.92 0.00 0.00 2.57
2919 7054 1.376609 CCGGGGCCTCTCAATTTTCG 61.377 60.000 0.00 0.00 0.00 3.46
2974 7109 4.393062 GTGGCATGCGCTAATATAACTCAT 59.607 41.667 12.44 0.00 38.60 2.90
2975 7110 4.392754 TGGCATGCGCTAATATAACTCATG 59.607 41.667 12.44 0.00 38.60 3.07
2985 7120 2.634815 ATAACTCATGGCTGGCTCTG 57.365 50.000 2.00 0.42 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.423061 CCTTTGGTTTTTGAGTTCCATAATAAG 57.577 33.333 0.00 0.00 0.00 1.73
27 28 9.148879 TCCTTTGGTTTTTGAGTTCCATAATAA 57.851 29.630 0.00 0.00 0.00 1.40
28 29 8.581578 GTCCTTTGGTTTTTGAGTTCCATAATA 58.418 33.333 0.00 0.00 0.00 0.98
29 30 7.070571 TGTCCTTTGGTTTTTGAGTTCCATAAT 59.929 33.333 0.00 0.00 0.00 1.28
30 31 6.381420 TGTCCTTTGGTTTTTGAGTTCCATAA 59.619 34.615 0.00 0.00 0.00 1.90
31 32 5.894393 TGTCCTTTGGTTTTTGAGTTCCATA 59.106 36.000 0.00 0.00 0.00 2.74
32 33 4.714308 TGTCCTTTGGTTTTTGAGTTCCAT 59.286 37.500 0.00 0.00 0.00 3.41
33 34 4.090090 TGTCCTTTGGTTTTTGAGTTCCA 58.910 39.130 0.00 0.00 0.00 3.53
34 35 4.729227 TGTCCTTTGGTTTTTGAGTTCC 57.271 40.909 0.00 0.00 0.00 3.62
35 36 7.201609 GGAATTTGTCCTTTGGTTTTTGAGTTC 60.202 37.037 0.00 0.00 43.98 3.01
83 84 7.448161 ACACTGTTCATCCATGTCATTTAAAGA 59.552 33.333 0.00 0.00 0.00 2.52
92 93 2.744202 GGTCACACTGTTCATCCATGTC 59.256 50.000 0.00 0.00 0.00 3.06
150 180 8.203485 GCCCATTTGATTTTGTAGGAAATATGA 58.797 33.333 0.00 0.00 29.75 2.15
154 184 5.339118 GGGCCCATTTGATTTTGTAGGAAAT 60.339 40.000 19.95 0.00 32.16 2.17
162 192 6.890979 TTAAAAAGGGCCCATTTGATTTTG 57.109 33.333 25.07 0.00 0.00 2.44
163 193 7.523293 CTTTAAAAAGGGCCCATTTGATTTT 57.477 32.000 25.07 17.30 32.40 1.82
178 208 8.321353 AGGCCTATTTGATTTCCCTTTAAAAAG 58.679 33.333 1.29 0.00 35.79 2.27
179 209 8.213489 AGGCCTATTTGATTTCCCTTTAAAAA 57.787 30.769 1.29 0.00 0.00 1.94
180 210 7.806680 AGGCCTATTTGATTTCCCTTTAAAA 57.193 32.000 1.29 0.00 0.00 1.52
181 211 7.806680 AAGGCCTATTTGATTTCCCTTTAAA 57.193 32.000 5.16 0.00 0.00 1.52
182 212 7.806680 AAAGGCCTATTTGATTTCCCTTTAA 57.193 32.000 5.16 0.00 38.88 1.52
183 213 8.903059 TTAAAGGCCTATTTGATTTCCCTTTA 57.097 30.769 5.16 0.00 40.51 1.85
184 214 7.806680 TTAAAGGCCTATTTGATTTCCCTTT 57.193 32.000 5.16 0.00 42.15 3.11
185 215 7.995052 ATTAAAGGCCTATTTGATTTCCCTT 57.005 32.000 5.16 0.00 32.93 3.95
186 216 8.289544 AGTATTAAAGGCCTATTTGATTTCCCT 58.710 33.333 5.16 0.00 0.00 4.20
187 217 8.478775 AGTATTAAAGGCCTATTTGATTTCCC 57.521 34.615 5.16 0.00 0.00 3.97
188 218 9.355916 AGAGTATTAAAGGCCTATTTGATTTCC 57.644 33.333 5.16 0.00 0.00 3.13
277 317 8.088365 TGTGTATGTGAGCATCTATATTGTACC 58.912 37.037 0.00 0.00 36.58 3.34
285 325 8.370182 TGTATGATTGTGTATGTGAGCATCTAT 58.630 33.333 0.00 0.00 36.58 1.98
286 326 7.653311 GTGTATGATTGTGTATGTGAGCATCTA 59.347 37.037 0.00 0.00 36.58 1.98
314 355 3.697982 CGTGTATGTGTTCATAGGCGTA 58.302 45.455 0.00 0.00 37.23 4.42
317 358 2.276201 TGCGTGTATGTGTTCATAGGC 58.724 47.619 0.00 0.00 37.23 3.93
327 368 3.512724 GGGTATAGGGTATGCGTGTATGT 59.487 47.826 0.00 0.00 0.00 2.29
331 373 1.132945 AGGGGTATAGGGTATGCGTGT 60.133 52.381 0.00 0.00 0.00 4.49
335 377 2.438392 GGCATAGGGGTATAGGGTATGC 59.562 54.545 4.41 4.41 43.43 3.14
338 380 2.091689 TGGGCATAGGGGTATAGGGTA 58.908 52.381 0.00 0.00 0.00 3.69
346 388 2.368329 GGAGGTGGGCATAGGGGT 60.368 66.667 0.00 0.00 0.00 4.95
347 389 3.560251 CGGAGGTGGGCATAGGGG 61.560 72.222 0.00 0.00 0.00 4.79
348 390 2.445845 TCGGAGGTGGGCATAGGG 60.446 66.667 0.00 0.00 0.00 3.53
355 397 1.323412 CTCAGTATCTCGGAGGTGGG 58.677 60.000 4.96 0.00 35.32 4.61
356 398 0.671251 GCTCAGTATCTCGGAGGTGG 59.329 60.000 4.96 0.00 38.48 4.61
381 423 9.932699 GATGACTTTGTCAATCTCAAGATATTG 57.067 33.333 4.46 0.00 45.96 1.90
424 466 0.667993 GAGAGCAGATGTCTCCCTCG 59.332 60.000 0.00 0.00 35.35 4.63
431 473 5.618056 TTTGTTCAATGAGAGCAGATGTC 57.382 39.130 0.00 0.00 38.75 3.06
434 476 6.765036 ACGATATTTGTTCAATGAGAGCAGAT 59.235 34.615 0.00 0.00 38.75 2.90
436 478 6.355397 ACGATATTTGTTCAATGAGAGCAG 57.645 37.500 0.00 0.00 38.75 4.24
438 480 5.232202 TCGACGATATTTGTTCAATGAGAGC 59.768 40.000 0.00 0.00 0.00 4.09
459 501 9.661563 TTACTGAATTTATTTTAGCCTTCTCGA 57.338 29.630 0.00 0.00 0.00 4.04
503 546 4.072131 CCAAAGTTCAAGTGCTAGGCTTA 58.928 43.478 0.00 0.00 0.00 3.09
505 548 2.158608 ACCAAAGTTCAAGTGCTAGGCT 60.159 45.455 0.00 0.00 0.00 4.58
506 549 2.030805 CACCAAAGTTCAAGTGCTAGGC 60.031 50.000 0.00 0.00 0.00 3.93
512 2922 1.402787 AGCCCACCAAAGTTCAAGTG 58.597 50.000 0.00 0.00 0.00 3.16
564 2974 0.706433 AACAGAGGGTACGGAGGGTA 59.294 55.000 0.00 0.00 0.00 3.69
565 2975 0.614134 GAACAGAGGGTACGGAGGGT 60.614 60.000 0.00 0.00 0.00 4.34
566 2976 1.328430 GGAACAGAGGGTACGGAGGG 61.328 65.000 0.00 0.00 0.00 4.30
567 2977 1.328430 GGGAACAGAGGGTACGGAGG 61.328 65.000 0.00 0.00 0.00 4.30
568 2978 0.613853 TGGGAACAGAGGGTACGGAG 60.614 60.000 0.00 0.00 35.01 4.63
569 2979 0.178926 TTGGGAACAGAGGGTACGGA 60.179 55.000 0.00 0.00 44.54 4.69
570 2980 0.909623 ATTGGGAACAGAGGGTACGG 59.090 55.000 0.00 0.00 44.54 4.02
571 2981 1.278127 ACATTGGGAACAGAGGGTACG 59.722 52.381 0.00 0.00 44.54 3.67
572 2982 3.434940 AACATTGGGAACAGAGGGTAC 57.565 47.619 0.00 0.00 44.54 3.34
755 4745 3.567478 CTACGTGCGTGGGCTGTGA 62.567 63.158 7.55 0.00 40.82 3.58
773 4763 1.977412 GAGACGCTTTGAGACACGTAC 59.023 52.381 0.00 0.00 39.16 3.67
774 4764 1.068748 GGAGACGCTTTGAGACACGTA 60.069 52.381 0.00 0.00 39.16 3.57
775 4765 0.318784 GGAGACGCTTTGAGACACGT 60.319 55.000 0.00 0.00 42.27 4.49
778 4768 0.318441 CAGGGAGACGCTTTGAGACA 59.682 55.000 0.00 0.00 0.00 3.41
781 4771 1.743252 GGCAGGGAGACGCTTTGAG 60.743 63.158 0.00 0.00 0.00 3.02
784 4774 3.249189 TGGGCAGGGAGACGCTTT 61.249 61.111 0.00 0.00 0.00 3.51
814 4804 1.139095 GGGTTAGCCTCAGTCGTCG 59.861 63.158 0.00 0.00 34.45 5.12
815 4805 1.139095 CGGGTTAGCCTCAGTCGTC 59.861 63.158 0.00 0.00 34.45 4.20
816 4806 1.593296 GACGGGTTAGCCTCAGTCGT 61.593 60.000 0.00 0.00 31.98 4.34
879 4869 1.296715 GATGGAAGTGCGTGTCCCT 59.703 57.895 0.00 0.00 32.48 4.20
880 4870 1.745489 GGATGGAAGTGCGTGTCCC 60.745 63.158 0.00 0.00 32.48 4.46
881 4871 1.745489 GGGATGGAAGTGCGTGTCC 60.745 63.158 0.00 0.00 0.00 4.02
882 4872 0.392998 ATGGGATGGAAGTGCGTGTC 60.393 55.000 0.00 0.00 0.00 3.67
952 4949 1.352083 CTCAGGAGGTTGGTGAGGAA 58.648 55.000 0.00 0.00 35.11 3.36
956 4953 1.533033 TCGCTCAGGAGGTTGGTGA 60.533 57.895 0.00 0.00 0.00 4.02
1005 5008 3.399181 GCCTCGGTGACCATGGGA 61.399 66.667 18.09 1.74 0.00 4.37
1054 5060 4.404654 CGGCAAAGGCTTGGACGC 62.405 66.667 18.38 9.63 40.87 5.19
1055 5061 3.737172 CCGGCAAAGGCTTGGACG 61.737 66.667 23.17 23.17 40.87 4.79
1145 5151 4.172512 CATCCTGGCCTGCGCTCT 62.173 66.667 9.73 0.00 34.44 4.09
1284 5299 3.432588 AGCTCCAGGTCGTCGTCG 61.433 66.667 0.00 0.00 38.55 5.12
1386 5401 4.777463 AGTGTGTTTAGTAACCACAAGCT 58.223 39.130 14.09 6.40 37.64 3.74
1390 5405 7.673180 AGCTATTAGTGTGTTTAGTAACCACA 58.327 34.615 9.02 9.02 37.64 4.17
1392 5407 9.865321 CTAAGCTATTAGTGTGTTTAGTAACCA 57.135 33.333 0.00 0.00 34.77 3.67
1393 5408 8.815189 GCTAAGCTATTAGTGTGTTTAGTAACC 58.185 37.037 0.00 0.00 40.55 2.85
1394 5409 9.583765 AGCTAAGCTATTAGTGTGTTTAGTAAC 57.416 33.333 0.00 0.00 40.55 2.50
1395 5410 9.582431 CAGCTAAGCTATTAGTGTGTTTAGTAA 57.418 33.333 0.00 0.00 40.55 2.24
1396 5411 7.705325 GCAGCTAAGCTATTAGTGTGTTTAGTA 59.295 37.037 0.00 0.00 40.55 1.82
1397 5412 6.535508 GCAGCTAAGCTATTAGTGTGTTTAGT 59.464 38.462 0.00 0.00 40.55 2.24
1399 5414 6.403049 TGCAGCTAAGCTATTAGTGTGTTTA 58.597 36.000 0.00 0.00 40.55 2.01
1400 5415 5.245531 TGCAGCTAAGCTATTAGTGTGTTT 58.754 37.500 0.00 0.00 40.55 2.83
1401 5416 4.832248 TGCAGCTAAGCTATTAGTGTGTT 58.168 39.130 0.00 0.00 40.55 3.32
1403 5418 4.813161 ACATGCAGCTAAGCTATTAGTGTG 59.187 41.667 0.00 0.00 40.55 3.82
1405 5420 7.664082 ATTACATGCAGCTAAGCTATTAGTG 57.336 36.000 0.00 0.00 40.55 2.74
1406 5421 9.209175 GTTATTACATGCAGCTAAGCTATTAGT 57.791 33.333 0.00 0.00 40.55 2.24
1408 5423 8.154203 TGGTTATTACATGCAGCTAAGCTATTA 58.846 33.333 0.00 0.00 36.40 0.98
1409 5424 6.998074 TGGTTATTACATGCAGCTAAGCTATT 59.002 34.615 0.00 0.00 36.40 1.73
1410 5425 6.533730 TGGTTATTACATGCAGCTAAGCTAT 58.466 36.000 0.00 0.00 36.40 2.97
1411 5426 5.924356 TGGTTATTACATGCAGCTAAGCTA 58.076 37.500 0.00 0.00 36.40 3.32
1413 5428 5.471456 AGATGGTTATTACATGCAGCTAAGC 59.529 40.000 0.00 0.00 0.00 3.09
1414 5429 6.707608 TCAGATGGTTATTACATGCAGCTAAG 59.292 38.462 0.00 0.00 0.00 2.18
1415 5430 6.591001 TCAGATGGTTATTACATGCAGCTAA 58.409 36.000 0.00 0.00 0.00 3.09
1416 5431 6.173427 TCAGATGGTTATTACATGCAGCTA 57.827 37.500 0.00 0.00 0.00 3.32
1417 5432 5.039920 TCAGATGGTTATTACATGCAGCT 57.960 39.130 0.00 0.00 0.00 4.24
1418 5433 5.471116 TGATCAGATGGTTATTACATGCAGC 59.529 40.000 0.00 0.00 0.00 5.25
1419 5434 7.500720 TTGATCAGATGGTTATTACATGCAG 57.499 36.000 0.00 0.00 0.00 4.41
1421 5436 6.805271 GCATTGATCAGATGGTTATTACATGC 59.195 38.462 15.25 10.59 0.00 4.06
1423 5438 8.162085 AGAGCATTGATCAGATGGTTATTACAT 58.838 33.333 17.62 0.00 35.54 2.29
1424 5439 7.512130 AGAGCATTGATCAGATGGTTATTACA 58.488 34.615 17.62 0.00 35.54 2.41
1428 5443 6.015095 TCGTAGAGCATTGATCAGATGGTTAT 60.015 38.462 17.62 13.72 35.54 1.89
1432 5447 4.248691 TCGTAGAGCATTGATCAGATGG 57.751 45.455 4.52 1.82 0.00 3.51
1437 5452 7.941919 AGTACTAATTCGTAGAGCATTGATCA 58.058 34.615 4.52 0.00 38.43 2.92
1439 5454 7.941919 TGAGTACTAATTCGTAGAGCATTGAT 58.058 34.615 0.00 0.00 38.43 2.57
1440 5455 7.329588 TGAGTACTAATTCGTAGAGCATTGA 57.670 36.000 0.00 0.00 38.43 2.57
1441 5456 9.678941 TTATGAGTACTAATTCGTAGAGCATTG 57.321 33.333 0.00 0.00 38.43 2.82
1466 5481 9.914834 TGTGGTTAAGGATTAATTGCTAGTATT 57.085 29.630 0.00 0.00 43.30 1.89
1467 5482 9.561069 CTGTGGTTAAGGATTAATTGCTAGTAT 57.439 33.333 0.00 0.00 43.30 2.12
1468 5483 7.990886 CCTGTGGTTAAGGATTAATTGCTAGTA 59.009 37.037 0.00 0.00 43.30 1.82
1469 5484 6.828785 CCTGTGGTTAAGGATTAATTGCTAGT 59.171 38.462 0.00 0.00 43.30 2.57
1637 5652 6.347859 TCTGTGTTTTTGTTACAAGGGTTT 57.652 33.333 0.00 0.00 0.00 3.27
1638 5653 5.986501 TCTGTGTTTTTGTTACAAGGGTT 57.013 34.783 0.00 0.00 0.00 4.11
1639 5654 6.831868 AGTATCTGTGTTTTTGTTACAAGGGT 59.168 34.615 0.00 0.00 0.00 4.34
1640 5655 7.272037 AGTATCTGTGTTTTTGTTACAAGGG 57.728 36.000 0.00 0.00 0.00 3.95
1641 5656 7.167468 GCAAGTATCTGTGTTTTTGTTACAAGG 59.833 37.037 0.00 0.00 0.00 3.61
1642 5657 7.700234 TGCAAGTATCTGTGTTTTTGTTACAAG 59.300 33.333 0.00 0.00 0.00 3.16
1643 5658 7.486551 GTGCAAGTATCTGTGTTTTTGTTACAA 59.513 33.333 0.00 0.00 0.00 2.41
1645 5660 6.970043 TGTGCAAGTATCTGTGTTTTTGTTAC 59.030 34.615 0.00 0.00 0.00 2.50
1647 5662 5.804979 GTGTGCAAGTATCTGTGTTTTTGTT 59.195 36.000 0.00 0.00 0.00 2.83
1650 5665 5.356751 TCTGTGTGCAAGTATCTGTGTTTTT 59.643 36.000 0.00 0.00 0.00 1.94
1652 5667 4.450976 TCTGTGTGCAAGTATCTGTGTTT 58.549 39.130 0.00 0.00 0.00 2.83
1666 5681 3.429085 CAGTCAAAACAGTTCTGTGTGC 58.571 45.455 6.22 5.24 0.00 4.57
1669 5684 3.763097 TGCAGTCAAAACAGTTCTGTG 57.237 42.857 6.22 0.00 0.00 3.66
1670 5685 4.989279 ATTGCAGTCAAAACAGTTCTGT 57.011 36.364 0.00 0.00 35.56 3.41
1676 5691 4.505191 CAGTTGGAATTGCAGTCAAAACAG 59.495 41.667 0.00 7.24 35.56 3.16
1678 5693 4.681744 TCAGTTGGAATTGCAGTCAAAAC 58.318 39.130 0.00 0.00 35.56 2.43
1679 5694 4.998671 TCAGTTGGAATTGCAGTCAAAA 57.001 36.364 0.00 0.00 35.56 2.44
1740 5764 0.108898 CACTGCACTCTTCTCCTCGG 60.109 60.000 0.00 0.00 0.00 4.63
1741 5765 0.108898 CCACTGCACTCTTCTCCTCG 60.109 60.000 0.00 0.00 0.00 4.63
1753 5777 0.181114 AGTTGAAGCTGTCCACTGCA 59.819 50.000 10.75 0.00 42.33 4.41
1756 5780 1.346068 GAGGAGTTGAAGCTGTCCACT 59.654 52.381 0.00 0.00 34.97 4.00
1759 5783 1.016653 GCGAGGAGTTGAAGCTGTCC 61.017 60.000 0.00 0.00 0.00 4.02
1821 5845 1.474478 TCTTCCAGTGCTAGAGCGAAG 59.526 52.381 9.38 9.38 45.83 3.79
1871 5904 4.319118 GCTCTTGCTCACTACAACAAGAAC 60.319 45.833 5.86 0.00 45.63 3.01
1881 5914 1.818674 TGATGTCGCTCTTGCTCACTA 59.181 47.619 0.00 0.00 36.97 2.74
1966 5999 0.886490 CTTTGAGCTTGCCGGTGAGT 60.886 55.000 1.90 0.00 0.00 3.41
2045 6081 4.043310 TGAAGGAAAACATCATCTCCAGGT 59.957 41.667 0.00 0.00 0.00 4.00
2046 6082 4.592942 TGAAGGAAAACATCATCTCCAGG 58.407 43.478 0.00 0.00 0.00 4.45
2047 6083 5.392811 GCTTGAAGGAAAACATCATCTCCAG 60.393 44.000 0.00 0.00 0.00 3.86
2048 6084 4.460382 GCTTGAAGGAAAACATCATCTCCA 59.540 41.667 0.00 0.00 0.00 3.86
2084 6120 2.885135 ATCAGTGGCATGGAGAACAA 57.115 45.000 0.00 0.00 0.00 2.83
2110 6146 4.220821 AGCCGTGGTTATGATAGAATCGAT 59.779 41.667 0.00 0.00 0.00 3.59
2112 6148 3.914312 AGCCGTGGTTATGATAGAATCG 58.086 45.455 0.00 0.00 0.00 3.34
2122 6158 1.153706 CCGTCGAAGCCGTGGTTAT 60.154 57.895 0.00 0.00 37.05 1.89
2170 6206 3.132111 TCAACAAGGGGAAGAAAAACAGC 59.868 43.478 0.00 0.00 0.00 4.40
2267 6305 4.382040 GCAAACAGGCACTAGAGAGACATA 60.382 45.833 0.00 0.00 36.02 2.29
2331 6370 7.065216 ACATACATCAGTTTCATATATGCGC 57.935 36.000 7.92 0.00 0.00 6.09
2399 6438 6.552859 TTAATTTCAAGTGAATGCTGACGA 57.447 33.333 0.00 0.00 33.54 4.20
2639 6678 4.584638 TTCATGCTAGCCTTTTCCCTTA 57.415 40.909 13.29 0.00 0.00 2.69
2694 6733 3.719121 CTGAGCAGCTACCCACCT 58.281 61.111 0.00 0.00 0.00 4.00
2855 6962 1.572085 GCGACTGTCTGTGCATGCTT 61.572 55.000 20.33 0.00 0.00 3.91
2867 6974 2.186826 GTTTGGTGCCTGCGACTGT 61.187 57.895 0.00 0.00 0.00 3.55
2868 6975 0.602638 TAGTTTGGTGCCTGCGACTG 60.603 55.000 0.00 0.00 0.00 3.51
2869 6976 0.107831 TTAGTTTGGTGCCTGCGACT 59.892 50.000 0.00 0.00 0.00 4.18
2870 6977 1.135689 CATTAGTTTGGTGCCTGCGAC 60.136 52.381 0.00 0.00 0.00 5.19
2871 6978 1.164411 CATTAGTTTGGTGCCTGCGA 58.836 50.000 0.00 0.00 0.00 5.10
2872 6979 0.456653 GCATTAGTTTGGTGCCTGCG 60.457 55.000 0.00 0.00 32.88 5.18
2928 7063 5.309806 ACCACCTCCACTGTAATTACTTCTT 59.690 40.000 16.33 0.00 0.00 2.52
2929 7064 4.844655 ACCACCTCCACTGTAATTACTTCT 59.155 41.667 16.33 0.00 0.00 2.85
2930 7065 4.935808 CACCACCTCCACTGTAATTACTTC 59.064 45.833 16.33 0.00 0.00 3.01
2931 7066 4.263331 CCACCACCTCCACTGTAATTACTT 60.263 45.833 16.33 1.17 0.00 2.24
2932 7067 3.263425 CCACCACCTCCACTGTAATTACT 59.737 47.826 16.33 0.00 0.00 2.24
2933 7068 3.606687 CCACCACCTCCACTGTAATTAC 58.393 50.000 8.75 8.75 0.00 1.89
2934 7069 2.026636 GCCACCACCTCCACTGTAATTA 60.027 50.000 0.00 0.00 0.00 1.40
2974 7109 0.478072 TTCTTTTCCAGAGCCAGCCA 59.522 50.000 0.00 0.00 31.12 4.75
2975 7110 3.346426 TTCTTTTCCAGAGCCAGCC 57.654 52.632 0.00 0.00 31.12 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.