Multiple sequence alignment - TraesCS7D01G406400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G406400 chr7D 100.000 4458 0 0 1 4458 523435471 523439928 0.000000e+00 8233.0
1 TraesCS7D01G406400 chr7D 87.620 1454 143 17 1992 3440 523277186 523275765 0.000000e+00 1653.0
2 TraesCS7D01G406400 chr7D 86.340 1508 183 6 1851 3348 522872733 522874227 0.000000e+00 1622.0
3 TraesCS7D01G406400 chr7D 84.806 849 123 5 2551 3396 523269158 523268313 0.000000e+00 848.0
4 TraesCS7D01G406400 chr7D 85.602 382 42 2 1902 2283 523486508 523486876 5.410000e-104 388.0
5 TraesCS7D01G406400 chr7D 92.803 264 18 1 1450 1713 523277554 523277292 9.050000e-102 381.0
6 TraesCS7D01G406400 chr7D 95.359 237 10 1 1450 1686 523486211 523486446 4.210000e-100 375.0
7 TraesCS7D01G406400 chr7D 83.832 334 41 6 1454 1786 522872317 522872638 5.600000e-79 305.0
8 TraesCS7D01G406400 chr7D 91.713 181 15 0 1208 1388 523277824 523277644 7.400000e-63 252.0
9 TraesCS7D01G406400 chr7D 78.947 399 63 15 998 1385 523485731 523486119 7.400000e-63 252.0
10 TraesCS7D01G406400 chr7D 84.722 72 4 5 3372 3442 523488543 523488608 1.040000e-06 65.8
11 TraesCS7D01G406400 chr7A 90.267 2733 175 41 739 3433 603961466 603958787 0.000000e+00 3489.0
12 TraesCS7D01G406400 chr7A 87.199 1414 146 14 1992 3401 603945198 603943816 0.000000e+00 1576.0
13 TraesCS7D01G406400 chr7A 87.124 831 101 4 2551 3378 603025373 603026200 0.000000e+00 937.0
14 TraesCS7D01G406400 chr7A 86.159 643 77 7 1854 2494 603024569 603025201 0.000000e+00 684.0
15 TraesCS7D01G406400 chr7A 94.760 229 12 0 1455 1683 603945557 603945329 1.520000e-94 357.0
16 TraesCS7D01G406400 chr7A 84.290 331 35 8 1452 1780 603024252 603024567 1.560000e-79 307.0
17 TraesCS7D01G406400 chr7A 80.609 361 36 18 1024 1380 603945994 603945664 9.580000e-62 248.0
18 TraesCS7D01G406400 chr7B 94.118 1564 78 4 1888 3442 558642057 558640499 0.000000e+00 2366.0
19 TraesCS7D01G406400 chr7B 84.619 1957 236 36 1454 3378 556687141 556689064 0.000000e+00 1886.0
20 TraesCS7D01G406400 chr7B 86.295 1598 158 28 1854 3442 558365174 558363629 0.000000e+00 1681.0
21 TraesCS7D01G406400 chr7B 81.429 1400 240 15 1998 3389 558324427 558323040 0.000000e+00 1127.0
22 TraesCS7D01G406400 chr7B 86.460 1034 71 30 670 1685 558643175 558642193 0.000000e+00 1070.0
23 TraesCS7D01G406400 chr7B 81.948 842 137 12 3622 4456 490305599 490306432 0.000000e+00 699.0
24 TraesCS7D01G406400 chr7B 94.902 255 13 0 1454 1708 558365502 558365248 2.500000e-107 399.0
25 TraesCS7D01G406400 chr7B 89.883 257 20 3 1 257 545983346 545983096 4.300000e-85 326.0
26 TraesCS7D01G406400 chr5B 94.255 644 35 2 24 667 202941341 202941982 0.000000e+00 983.0
27 TraesCS7D01G406400 chr5B 81.496 789 132 12 3648 4431 593438331 593437552 1.750000e-178 636.0
28 TraesCS7D01G406400 chr1D 89.021 674 57 11 1 668 22559629 22560291 0.000000e+00 819.0
29 TraesCS7D01G406400 chr2D 87.870 676 61 10 1 666 471064980 471064316 0.000000e+00 774.0
30 TraesCS7D01G406400 chr2D 81.508 703 117 6 3756 4454 104867232 104867925 2.330000e-157 566.0
31 TraesCS7D01G406400 chr3A 87.426 676 60 9 1 666 14059251 14058591 0.000000e+00 754.0
32 TraesCS7D01G406400 chr3A 81.431 517 90 4 3690 4204 686441880 686441368 6.900000e-113 418.0
33 TraesCS7D01G406400 chr5D 82.164 841 137 10 3622 4456 531255669 531256502 0.000000e+00 710.0
34 TraesCS7D01G406400 chr5D 81.873 502 86 4 3890 4391 553867891 553868387 6.900000e-113 418.0
35 TraesCS7D01G406400 chr6B 85.837 699 54 14 1 667 551953113 551952428 0.000000e+00 701.0
36 TraesCS7D01G406400 chr3B 82.078 770 118 12 3697 4456 728315442 728314683 1.350000e-179 640.0
37 TraesCS7D01G406400 chr3B 90.000 330 27 3 342 666 60585238 60584910 5.330000e-114 422.0
38 TraesCS7D01G406400 chr3B 85.714 231 27 3 1 231 60585666 60585442 5.760000e-59 239.0
39 TraesCS7D01G406400 chr4D 78.598 813 138 17 3646 4431 69749528 69748725 5.150000e-139 505.0
40 TraesCS7D01G406400 chr4D 81.455 550 91 5 3670 4216 405024182 405023641 1.470000e-119 440.0
41 TraesCS7D01G406400 chr3D 81.660 518 89 3 3690 4204 549032414 549031900 4.120000e-115 425.0
42 TraesCS7D01G406400 chr1B 78.642 604 97 21 3876 4455 120402577 120401982 5.450000e-99 372.0
43 TraesCS7D01G406400 chr6D 82.313 294 21 8 257 542 2091318 2091048 4.490000e-55 226.0
44 TraesCS7D01G406400 chr4A 79.401 267 50 4 4115 4381 521262963 521262702 2.740000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G406400 chr7D 523435471 523439928 4457 False 8233.000000 8233 100.000000 1 4458 1 chr7D.!!$F1 4457
1 TraesCS7D01G406400 chr7D 522872317 522874227 1910 False 963.500000 1622 85.086000 1454 3348 2 chr7D.!!$F2 1894
2 TraesCS7D01G406400 chr7D 523268313 523269158 845 True 848.000000 848 84.806000 2551 3396 1 chr7D.!!$R1 845
3 TraesCS7D01G406400 chr7D 523275765 523277824 2059 True 762.000000 1653 90.712000 1208 3440 3 chr7D.!!$R2 2232
4 TraesCS7D01G406400 chr7D 523485731 523488608 2877 False 270.200000 388 86.157500 998 3442 4 chr7D.!!$F3 2444
5 TraesCS7D01G406400 chr7A 603958787 603961466 2679 True 3489.000000 3489 90.267000 739 3433 1 chr7A.!!$R1 2694
6 TraesCS7D01G406400 chr7A 603943816 603945994 2178 True 727.000000 1576 87.522667 1024 3401 3 chr7A.!!$R2 2377
7 TraesCS7D01G406400 chr7A 603024252 603026200 1948 False 642.666667 937 85.857667 1452 3378 3 chr7A.!!$F1 1926
8 TraesCS7D01G406400 chr7B 556687141 556689064 1923 False 1886.000000 1886 84.619000 1454 3378 1 chr7B.!!$F2 1924
9 TraesCS7D01G406400 chr7B 558640499 558643175 2676 True 1718.000000 2366 90.289000 670 3442 2 chr7B.!!$R4 2772
10 TraesCS7D01G406400 chr7B 558323040 558324427 1387 True 1127.000000 1127 81.429000 1998 3389 1 chr7B.!!$R2 1391
11 TraesCS7D01G406400 chr7B 558363629 558365502 1873 True 1040.000000 1681 90.598500 1454 3442 2 chr7B.!!$R3 1988
12 TraesCS7D01G406400 chr7B 490305599 490306432 833 False 699.000000 699 81.948000 3622 4456 1 chr7B.!!$F1 834
13 TraesCS7D01G406400 chr5B 202941341 202941982 641 False 983.000000 983 94.255000 24 667 1 chr5B.!!$F1 643
14 TraesCS7D01G406400 chr5B 593437552 593438331 779 True 636.000000 636 81.496000 3648 4431 1 chr5B.!!$R1 783
15 TraesCS7D01G406400 chr1D 22559629 22560291 662 False 819.000000 819 89.021000 1 668 1 chr1D.!!$F1 667
16 TraesCS7D01G406400 chr2D 471064316 471064980 664 True 774.000000 774 87.870000 1 666 1 chr2D.!!$R1 665
17 TraesCS7D01G406400 chr2D 104867232 104867925 693 False 566.000000 566 81.508000 3756 4454 1 chr2D.!!$F1 698
18 TraesCS7D01G406400 chr3A 14058591 14059251 660 True 754.000000 754 87.426000 1 666 1 chr3A.!!$R1 665
19 TraesCS7D01G406400 chr3A 686441368 686441880 512 True 418.000000 418 81.431000 3690 4204 1 chr3A.!!$R2 514
20 TraesCS7D01G406400 chr5D 531255669 531256502 833 False 710.000000 710 82.164000 3622 4456 1 chr5D.!!$F1 834
21 TraesCS7D01G406400 chr6B 551952428 551953113 685 True 701.000000 701 85.837000 1 667 1 chr6B.!!$R1 666
22 TraesCS7D01G406400 chr3B 728314683 728315442 759 True 640.000000 640 82.078000 3697 4456 1 chr3B.!!$R1 759
23 TraesCS7D01G406400 chr3B 60584910 60585666 756 True 330.500000 422 87.857000 1 666 2 chr3B.!!$R2 665
24 TraesCS7D01G406400 chr4D 69748725 69749528 803 True 505.000000 505 78.598000 3646 4431 1 chr4D.!!$R1 785
25 TraesCS7D01G406400 chr4D 405023641 405024182 541 True 440.000000 440 81.455000 3670 4216 1 chr4D.!!$R2 546
26 TraesCS7D01G406400 chr3D 549031900 549032414 514 True 425.000000 425 81.660000 3690 4204 1 chr3D.!!$R1 514
27 TraesCS7D01G406400 chr1B 120401982 120402577 595 True 372.000000 372 78.642000 3876 4455 1 chr1B.!!$R1 579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
685 858 0.108186 CAGAGCACGCCCATACTTGA 60.108 55.0 0.00 0.0 0.00 3.02 F
1396 1637 0.107508 TGGGAGTACTACTCGACCGG 60.108 60.0 4.77 0.0 45.96 5.28 F
2460 2800 0.250513 AAGGGTGTTGAGAGGATCGC 59.749 55.0 0.00 0.0 42.67 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2460 2800 0.390340 CCGGAGATCAGTGGTGTGTG 60.390 60.0 0.00 0.0 0.00 3.82 R
2925 3388 0.183731 TCCTCTGCAGCTCCGAGATA 59.816 55.0 9.47 0.0 0.00 1.98 R
3506 5067 0.031449 CAAACACGCCCGAAATGGTT 59.969 50.0 0.00 0.0 35.15 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.429930 CCACGCTTGTTCCTCCCA 59.570 61.111 0.00 0.00 0.00 4.37
108 117 9.715121 TTATGTACCTTTTAAGTCGTTTGAGAT 57.285 29.630 0.00 0.00 0.00 2.75
200 209 2.889045 AGCATGCATGACTGAAAACTGT 59.111 40.909 30.64 0.01 0.00 3.55
226 235 2.734723 CTGTCCCTGTGCGTCACG 60.735 66.667 0.00 0.00 37.14 4.35
298 333 2.357637 TGCTAGTTTGTTGTTGGCAGTC 59.642 45.455 0.00 0.00 0.00 3.51
344 508 1.817941 ACGTGCCTGCGTTTTGTCT 60.818 52.632 0.00 0.00 43.04 3.41
366 530 2.125952 CTGGATCGCTCGTGTGCA 60.126 61.111 0.00 0.00 0.00 4.57
379 543 1.202020 CGTGTGCACCAAATGTATCCG 60.202 52.381 15.69 0.00 0.00 4.18
382 546 3.057876 GTGTGCACCAAATGTATCCGAAA 60.058 43.478 15.69 0.00 0.00 3.46
384 548 4.104776 GTGCACCAAATGTATCCGAAATG 58.895 43.478 5.22 0.00 0.00 2.32
431 601 2.997315 CTGAGGCAGGGTGGACGA 60.997 66.667 0.00 0.00 0.00 4.20
491 661 0.178947 ATCCATCCGACCTCCTCCTC 60.179 60.000 0.00 0.00 0.00 3.71
584 756 5.057149 GCAACATTCTACCGACCAGAATAT 58.943 41.667 5.99 0.00 40.05 1.28
639 812 0.747255 TGAGATAACGGGCTCAGCTC 59.253 55.000 0.00 0.00 36.31 4.09
668 841 5.627499 TGATCAGAAACGAATTTTCCCAG 57.373 39.130 0.00 0.00 44.32 4.45
685 858 0.108186 CAGAGCACGCCCATACTTGA 60.108 55.000 0.00 0.00 0.00 3.02
691 864 1.134818 CACGCCCATACTTGAGTGCTA 60.135 52.381 0.00 0.00 0.00 3.49
696 869 4.455606 GCCCATACTTGAGTGCTAAATCT 58.544 43.478 0.00 0.00 0.00 2.40
705 878 4.697514 TGAGTGCTAAATCTAGTGGATGC 58.302 43.478 0.00 0.00 34.45 3.91
724 897 2.185867 GTGCCCCATCGCTACGAA 59.814 61.111 0.00 0.00 39.99 3.85
729 902 1.287425 CCCCATCGCTACGAAAAGAC 58.713 55.000 0.00 0.00 39.99 3.01
746 919 1.930908 GACCGGTAGGGACAGTCACG 61.931 65.000 7.34 0.00 43.47 4.35
835 1019 1.468520 CCGTCCACATTTCACATGTCC 59.531 52.381 0.00 0.00 0.00 4.02
880 1077 1.815003 CAAAGGGCTCAATCACTGTCC 59.185 52.381 0.00 0.00 0.00 4.02
885 1082 1.086634 GCTCAATCACTGTCCGCCTC 61.087 60.000 0.00 0.00 0.00 4.70
925 1122 2.125229 CGCATCTGCAGCCACTCT 60.125 61.111 9.47 0.00 42.21 3.24
1019 1216 1.466167 CAAGTGAAGCATTGGACGAGG 59.534 52.381 0.00 0.00 0.00 4.63
1048 1245 2.057408 CGCTCCCAAGCTCCTCTCT 61.057 63.158 0.00 0.00 46.91 3.10
1060 1261 1.074623 CCTCTCTCCATGGCCTCCT 60.075 63.158 6.96 0.00 0.00 3.69
1154 1376 3.056821 CCCCCGTGAAAATTCCTTTTCTC 60.057 47.826 10.98 7.34 46.84 2.87
1171 1395 3.063510 TCTCTCTGCTGGTTCAATTGG 57.936 47.619 5.42 0.00 0.00 3.16
1179 1403 3.318839 TGCTGGTTCAATTGGTTTCTCTG 59.681 43.478 5.42 0.00 0.00 3.35
1181 1405 3.295093 TGGTTCAATTGGTTTCTCTGCA 58.705 40.909 5.42 0.00 0.00 4.41
1195 1429 7.395772 TGGTTTCTCTGCATATGATTTTAACCA 59.604 33.333 17.42 17.42 38.15 3.67
1204 1438 6.148150 GCATATGATTTTAACCAATGGCATGG 59.852 38.462 6.97 7.58 46.38 3.66
1205 1439 5.954153 ATGATTTTAACCAATGGCATGGA 57.046 34.783 18.72 1.34 43.54 3.41
1206 1440 5.954153 TGATTTTAACCAATGGCATGGAT 57.046 34.783 18.72 11.67 43.54 3.41
1214 1448 2.233676 CCAATGGCATGGATGATGATGG 59.766 50.000 2.61 0.00 43.54 3.51
1228 1462 6.238320 GGATGATGATGGCTCGCTATTAATTC 60.238 42.308 0.00 0.00 0.00 2.17
1277 1511 3.364441 CGTACACCACCGACGGGA 61.364 66.667 20.00 0.00 36.97 5.14
1321 1555 3.093278 CTCAAGAATCGCACGGGC 58.907 61.111 0.00 0.00 0.00 6.13
1380 1618 6.830873 ATTTCTTCTTCATCTGTTCTTGGG 57.169 37.500 0.00 0.00 0.00 4.12
1385 1626 5.407407 TCTTCATCTGTTCTTGGGAGTAC 57.593 43.478 0.00 0.00 0.00 2.73
1388 1629 5.916661 TCATCTGTTCTTGGGAGTACTAC 57.083 43.478 0.00 0.00 0.00 2.73
1389 1630 5.580998 TCATCTGTTCTTGGGAGTACTACT 58.419 41.667 4.77 0.00 0.00 2.57
1390 1631 5.652891 TCATCTGTTCTTGGGAGTACTACTC 59.347 44.000 4.77 7.60 44.32 2.59
1391 1632 4.008330 TCTGTTCTTGGGAGTACTACTCG 58.992 47.826 4.77 0.00 45.96 4.18
1392 1633 4.008330 CTGTTCTTGGGAGTACTACTCGA 58.992 47.826 4.77 0.00 45.96 4.04
1394 1635 2.996631 TCTTGGGAGTACTACTCGACC 58.003 52.381 4.77 7.20 45.96 4.79
1395 1636 1.669779 CTTGGGAGTACTACTCGACCG 59.330 57.143 4.77 0.00 45.96 4.79
1396 1637 0.107508 TGGGAGTACTACTCGACCGG 60.108 60.000 4.77 0.00 45.96 5.28
1444 1717 1.890510 GCACCTTGGAACGACGGTT 60.891 57.895 0.00 0.00 39.63 4.44
1445 1718 1.441732 GCACCTTGGAACGACGGTTT 61.442 55.000 0.00 0.00 36.24 3.27
1446 1719 1.018910 CACCTTGGAACGACGGTTTT 58.981 50.000 0.00 0.00 36.24 2.43
1447 1720 1.003223 CACCTTGGAACGACGGTTTTC 60.003 52.381 0.00 0.00 36.24 2.29
1448 1721 0.589708 CCTTGGAACGACGGTTTTCC 59.410 55.000 13.06 13.06 41.62 3.13
1480 1754 1.103803 CCGAGTTCTGCTACTGCCTA 58.896 55.000 0.00 0.00 38.71 3.93
1711 1985 4.463879 CTCCCGGCCACTCTGCAG 62.464 72.222 7.63 7.63 0.00 4.41
1738 2015 4.034858 ACTGCAATCAATAATCACTCTGCG 59.965 41.667 0.00 0.00 0.00 5.18
1817 2107 8.414003 TCAATTAATTACGATACTCTGCAGTCT 58.586 33.333 14.67 2.22 33.62 3.24
1818 2108 9.678941 CAATTAATTACGATACTCTGCAGTCTA 57.321 33.333 14.67 4.60 33.62 2.59
1819 2109 9.680315 AATTAATTACGATACTCTGCAGTCTAC 57.320 33.333 14.67 2.43 33.62 2.59
1820 2110 6.694877 AATTACGATACTCTGCAGTCTACA 57.305 37.500 14.67 0.00 33.62 2.74
1821 2111 6.694877 ATTACGATACTCTGCAGTCTACAA 57.305 37.500 14.67 0.00 33.62 2.41
1822 2112 4.358494 ACGATACTCTGCAGTCTACAAC 57.642 45.455 14.67 0.34 33.62 3.32
1823 2113 4.011023 ACGATACTCTGCAGTCTACAACT 58.989 43.478 14.67 0.00 39.44 3.16
1824 2114 4.095185 ACGATACTCTGCAGTCTACAACTC 59.905 45.833 14.67 0.90 35.45 3.01
1825 2115 4.334203 CGATACTCTGCAGTCTACAACTCT 59.666 45.833 14.67 0.00 35.45 3.24
1854 2144 4.725790 GCCTGGAGCACTTCAATTAATT 57.274 40.909 0.00 0.00 42.97 1.40
2460 2800 0.250513 AAGGGTGTTGAGAGGATCGC 59.749 55.000 0.00 0.00 42.67 4.58
2534 2993 3.084786 AGCTAGCTTGGTTCAATTCACC 58.915 45.455 12.68 0.00 34.52 4.02
2537 2996 2.949447 AGCTTGGTTCAATTCACCACT 58.051 42.857 5.63 0.00 44.34 4.00
2613 3076 1.079127 CGTGGCTTCGGACAAGGAT 60.079 57.895 0.00 0.00 33.07 3.24
2788 3251 3.687321 GAGCAAGGCAGGGCGATGA 62.687 63.158 6.01 0.00 34.54 2.92
3322 3803 3.494048 GGATCGCTTCTTCTGGATGATGT 60.494 47.826 0.00 0.00 0.00 3.06
3356 3837 1.789464 CCTGAATCTGATAGCGTTCGC 59.211 52.381 9.24 9.24 0.00 4.70
3411 4971 4.571984 GGTTGCTGATTTTTGAGTTGCTTT 59.428 37.500 0.00 0.00 0.00 3.51
3420 4980 0.106918 TGAGTTGCTTTTCCGTGGGT 60.107 50.000 0.00 0.00 0.00 4.51
3450 5011 4.535526 TTTTTCCAGCCCAAGATAAAGC 57.464 40.909 0.00 0.00 0.00 3.51
3451 5012 2.897271 TTCCAGCCCAAGATAAAGCA 57.103 45.000 0.00 0.00 0.00 3.91
3452 5013 2.128771 TCCAGCCCAAGATAAAGCAC 57.871 50.000 0.00 0.00 0.00 4.40
3453 5014 0.734889 CCAGCCCAAGATAAAGCACG 59.265 55.000 0.00 0.00 0.00 5.34
3454 5015 1.678728 CCAGCCCAAGATAAAGCACGA 60.679 52.381 0.00 0.00 0.00 4.35
3455 5016 2.292267 CAGCCCAAGATAAAGCACGAT 58.708 47.619 0.00 0.00 0.00 3.73
3456 5017 2.684881 CAGCCCAAGATAAAGCACGATT 59.315 45.455 0.00 0.00 0.00 3.34
3457 5018 2.945668 AGCCCAAGATAAAGCACGATTC 59.054 45.455 0.00 0.00 0.00 2.52
3458 5019 2.682856 GCCCAAGATAAAGCACGATTCA 59.317 45.455 0.00 0.00 0.00 2.57
3459 5020 3.316308 GCCCAAGATAAAGCACGATTCAT 59.684 43.478 0.00 0.00 0.00 2.57
3460 5021 4.790766 GCCCAAGATAAAGCACGATTCATG 60.791 45.833 0.00 0.00 0.00 3.07
3461 5022 4.576053 CCCAAGATAAAGCACGATTCATGA 59.424 41.667 0.00 0.00 0.00 3.07
3462 5023 5.277683 CCCAAGATAAAGCACGATTCATGAG 60.278 44.000 0.00 0.00 0.00 2.90
3463 5024 5.203370 CAAGATAAAGCACGATTCATGAGC 58.797 41.667 0.00 0.00 0.00 4.26
3464 5025 4.445453 AGATAAAGCACGATTCATGAGCA 58.555 39.130 6.65 0.00 0.00 4.26
3465 5026 4.877823 AGATAAAGCACGATTCATGAGCAA 59.122 37.500 6.65 0.00 0.00 3.91
3466 5027 5.530171 AGATAAAGCACGATTCATGAGCAAT 59.470 36.000 6.65 0.00 0.00 3.56
3467 5028 6.707608 AGATAAAGCACGATTCATGAGCAATA 59.292 34.615 6.65 0.41 0.00 1.90
3468 5029 4.808077 AAGCACGATTCATGAGCAATAG 57.192 40.909 6.65 0.00 0.00 1.73
3469 5030 4.063998 AGCACGATTCATGAGCAATAGA 57.936 40.909 6.65 0.00 0.00 1.98
3470 5031 4.056740 AGCACGATTCATGAGCAATAGAG 58.943 43.478 6.65 0.00 0.00 2.43
3471 5032 4.053983 GCACGATTCATGAGCAATAGAGA 58.946 43.478 0.00 0.00 0.00 3.10
3472 5033 4.509230 GCACGATTCATGAGCAATAGAGAA 59.491 41.667 0.00 0.00 0.00 2.87
3473 5034 5.007039 GCACGATTCATGAGCAATAGAGAAA 59.993 40.000 0.00 0.00 0.00 2.52
3474 5035 6.293298 GCACGATTCATGAGCAATAGAGAAAT 60.293 38.462 0.00 0.00 0.00 2.17
3475 5036 7.070183 CACGATTCATGAGCAATAGAGAAATG 58.930 38.462 0.00 0.00 0.00 2.32
3476 5037 6.078479 CGATTCATGAGCAATAGAGAAATGC 58.922 40.000 0.00 0.00 40.34 3.56
3477 5038 5.762825 TTCATGAGCAATAGAGAAATGCC 57.237 39.130 0.00 0.00 40.93 4.40
3478 5039 5.045012 TCATGAGCAATAGAGAAATGCCT 57.955 39.130 0.00 0.00 40.93 4.75
3479 5040 4.820173 TCATGAGCAATAGAGAAATGCCTG 59.180 41.667 0.00 0.00 40.93 4.85
3480 5041 2.947652 TGAGCAATAGAGAAATGCCTGC 59.052 45.455 0.00 0.00 40.93 4.85
3481 5042 2.947652 GAGCAATAGAGAAATGCCTGCA 59.052 45.455 0.00 0.00 40.93 4.41
3482 5043 3.359033 AGCAATAGAGAAATGCCTGCAA 58.641 40.909 0.00 0.00 40.93 4.08
3483 5044 3.765511 AGCAATAGAGAAATGCCTGCAAA 59.234 39.130 0.00 0.00 40.93 3.68
3484 5045 4.221262 AGCAATAGAGAAATGCCTGCAAAA 59.779 37.500 0.00 0.00 40.93 2.44
3485 5046 4.931002 GCAATAGAGAAATGCCTGCAAAAA 59.069 37.500 0.00 0.00 34.03 1.94
3486 5047 5.063060 GCAATAGAGAAATGCCTGCAAAAAG 59.937 40.000 0.00 0.00 34.03 2.27
3487 5048 6.392354 CAATAGAGAAATGCCTGCAAAAAGA 58.608 36.000 0.00 0.00 0.00 2.52
3488 5049 6.786967 ATAGAGAAATGCCTGCAAAAAGAT 57.213 33.333 0.00 0.00 0.00 2.40
3489 5050 5.069501 AGAGAAATGCCTGCAAAAAGATC 57.930 39.130 0.00 0.00 0.00 2.75
3490 5051 4.771054 AGAGAAATGCCTGCAAAAAGATCT 59.229 37.500 0.00 0.00 0.00 2.75
3491 5052 4.817517 AGAAATGCCTGCAAAAAGATCTG 58.182 39.130 0.00 0.00 0.00 2.90
3492 5053 2.667473 ATGCCTGCAAAAAGATCTGC 57.333 45.000 0.00 0.00 39.09 4.26
3493 5054 0.604578 TGCCTGCAAAAAGATCTGCC 59.395 50.000 0.00 0.00 37.79 4.85
3494 5055 0.604578 GCCTGCAAAAAGATCTGCCA 59.395 50.000 0.00 0.00 37.79 4.92
3495 5056 1.206371 GCCTGCAAAAAGATCTGCCAT 59.794 47.619 0.00 0.00 37.79 4.40
3496 5057 2.354403 GCCTGCAAAAAGATCTGCCATT 60.354 45.455 0.00 0.00 37.79 3.16
3497 5058 3.259064 CCTGCAAAAAGATCTGCCATTG 58.741 45.455 0.00 0.97 37.79 2.82
3498 5059 2.671396 CTGCAAAAAGATCTGCCATTGC 59.329 45.455 19.84 19.84 42.49 3.56
3510 5071 2.523245 TGCCATTGCAATAGTGAACCA 58.477 42.857 12.53 0.00 46.66 3.67
3511 5072 3.098377 TGCCATTGCAATAGTGAACCAT 58.902 40.909 12.53 0.00 46.66 3.55
3512 5073 3.514706 TGCCATTGCAATAGTGAACCATT 59.485 39.130 12.53 0.00 46.66 3.16
3513 5074 4.020396 TGCCATTGCAATAGTGAACCATTT 60.020 37.500 12.53 0.00 46.66 2.32
3514 5075 4.567959 GCCATTGCAATAGTGAACCATTTC 59.432 41.667 12.53 0.00 37.47 2.17
3515 5076 4.799949 CCATTGCAATAGTGAACCATTTCG 59.200 41.667 12.53 0.00 34.04 3.46
3516 5077 4.433186 TTGCAATAGTGAACCATTTCGG 57.567 40.909 0.00 0.00 42.50 4.30
3517 5078 2.752354 TGCAATAGTGAACCATTTCGGG 59.248 45.455 0.00 0.00 40.22 5.14
3518 5079 2.479560 GCAATAGTGAACCATTTCGGGC 60.480 50.000 0.00 0.00 40.22 6.13
3519 5080 1.663695 ATAGTGAACCATTTCGGGCG 58.336 50.000 0.00 0.00 40.22 6.13
3520 5081 0.322322 TAGTGAACCATTTCGGGCGT 59.678 50.000 0.00 0.00 40.22 5.68
3521 5082 1.209127 GTGAACCATTTCGGGCGTG 59.791 57.895 0.00 0.00 40.22 5.34
3522 5083 1.228003 TGAACCATTTCGGGCGTGT 60.228 52.632 0.00 0.00 40.22 4.49
3523 5084 0.820074 TGAACCATTTCGGGCGTGTT 60.820 50.000 0.00 0.00 40.22 3.32
3524 5085 0.312729 GAACCATTTCGGGCGTGTTT 59.687 50.000 0.00 0.00 40.22 2.83
3525 5086 0.031449 AACCATTTCGGGCGTGTTTG 59.969 50.000 0.00 0.00 40.22 2.93
3526 5087 1.080839 CCATTTCGGGCGTGTTTGG 60.081 57.895 0.00 0.00 0.00 3.28
3527 5088 1.732683 CATTTCGGGCGTGTTTGGC 60.733 57.895 0.00 0.00 0.00 4.52
3528 5089 2.196925 ATTTCGGGCGTGTTTGGCA 61.197 52.632 0.00 0.00 35.84 4.92
3529 5090 2.141122 ATTTCGGGCGTGTTTGGCAG 62.141 55.000 0.00 0.00 35.84 4.85
3534 5095 4.264638 GCGTGTTTGGCAGCCGTT 62.265 61.111 7.03 0.00 0.00 4.44
3535 5096 2.051345 CGTGTTTGGCAGCCGTTC 60.051 61.111 7.03 0.00 0.00 3.95
3536 5097 2.829206 CGTGTTTGGCAGCCGTTCA 61.829 57.895 7.03 2.41 0.00 3.18
3537 5098 1.008538 GTGTTTGGCAGCCGTTCAG 60.009 57.895 7.03 0.00 0.00 3.02
3538 5099 2.192861 TGTTTGGCAGCCGTTCAGG 61.193 57.895 7.03 0.00 44.97 3.86
3539 5100 2.193536 GTTTGGCAGCCGTTCAGGT 61.194 57.895 7.03 0.00 43.70 4.00
3540 5101 2.192861 TTTGGCAGCCGTTCAGGTG 61.193 57.895 7.03 0.00 43.70 4.00
3543 5104 3.730761 GCAGCCGTTCAGGTGCAG 61.731 66.667 10.55 0.00 42.58 4.41
3544 5105 3.730761 CAGCCGTTCAGGTGCAGC 61.731 66.667 8.11 8.11 43.70 5.25
3554 5115 3.833304 GGTGCAGCCTGGCTAATC 58.167 61.111 22.90 13.77 36.40 1.75
3555 5116 2.182842 GGTGCAGCCTGGCTAATCG 61.183 63.158 22.90 10.29 36.40 3.34
3556 5117 2.182842 GTGCAGCCTGGCTAATCGG 61.183 63.158 22.90 9.88 36.40 4.18
3557 5118 2.366393 TGCAGCCTGGCTAATCGGA 61.366 57.895 22.90 7.43 36.40 4.55
3558 5119 1.596477 GCAGCCTGGCTAATCGGAG 60.596 63.158 22.90 8.28 36.40 4.63
3559 5120 1.070445 CAGCCTGGCTAATCGGAGG 59.930 63.158 22.90 2.01 36.40 4.30
3560 5121 2.281139 GCCTGGCTAATCGGAGGC 60.281 66.667 12.43 0.00 44.10 4.70
3561 5122 2.812619 GCCTGGCTAATCGGAGGCT 61.813 63.158 12.43 0.00 46.40 4.58
3562 5123 1.070445 CCTGGCTAATCGGAGGCTG 59.930 63.158 0.00 7.04 42.38 4.85
3563 5124 1.070445 CTGGCTAATCGGAGGCTGG 59.930 63.158 0.00 0.00 42.38 4.85
3564 5125 2.388890 CTGGCTAATCGGAGGCTGGG 62.389 65.000 0.00 0.00 42.38 4.45
3565 5126 2.444256 GGCTAATCGGAGGCTGGGT 61.444 63.158 0.00 0.00 38.91 4.51
3566 5127 1.227674 GCTAATCGGAGGCTGGGTG 60.228 63.158 0.00 0.00 0.00 4.61
3567 5128 1.686325 GCTAATCGGAGGCTGGGTGA 61.686 60.000 0.00 0.00 0.00 4.02
3568 5129 0.390860 CTAATCGGAGGCTGGGTGAG 59.609 60.000 0.00 0.00 0.00 3.51
3569 5130 0.032515 TAATCGGAGGCTGGGTGAGA 60.033 55.000 0.00 0.00 0.00 3.27
3570 5131 0.909610 AATCGGAGGCTGGGTGAGAA 60.910 55.000 0.00 0.00 0.00 2.87
3571 5132 0.909610 ATCGGAGGCTGGGTGAGAAA 60.910 55.000 0.00 0.00 0.00 2.52
3572 5133 1.125093 TCGGAGGCTGGGTGAGAAAA 61.125 55.000 0.00 0.00 0.00 2.29
3573 5134 0.035056 CGGAGGCTGGGTGAGAAAAT 60.035 55.000 0.00 0.00 0.00 1.82
3574 5135 1.209504 CGGAGGCTGGGTGAGAAAATA 59.790 52.381 0.00 0.00 0.00 1.40
3575 5136 2.644676 GGAGGCTGGGTGAGAAAATAC 58.355 52.381 0.00 0.00 0.00 1.89
3576 5137 2.026262 GGAGGCTGGGTGAGAAAATACA 60.026 50.000 0.00 0.00 0.00 2.29
3577 5138 3.561313 GGAGGCTGGGTGAGAAAATACAA 60.561 47.826 0.00 0.00 0.00 2.41
3578 5139 3.690460 AGGCTGGGTGAGAAAATACAAG 58.310 45.455 0.00 0.00 0.00 3.16
3579 5140 2.755103 GGCTGGGTGAGAAAATACAAGG 59.245 50.000 0.00 0.00 0.00 3.61
3580 5141 3.421844 GCTGGGTGAGAAAATACAAGGT 58.578 45.455 0.00 0.00 0.00 3.50
3581 5142 4.566907 GGCTGGGTGAGAAAATACAAGGTA 60.567 45.833 0.00 0.00 0.00 3.08
3582 5143 5.007682 GCTGGGTGAGAAAATACAAGGTAA 58.992 41.667 0.00 0.00 0.00 2.85
3583 5144 5.475564 GCTGGGTGAGAAAATACAAGGTAAA 59.524 40.000 0.00 0.00 0.00 2.01
3584 5145 6.015772 GCTGGGTGAGAAAATACAAGGTAAAA 60.016 38.462 0.00 0.00 0.00 1.52
3585 5146 7.470841 GCTGGGTGAGAAAATACAAGGTAAAAA 60.471 37.037 0.00 0.00 0.00 1.94
3586 5147 7.718525 TGGGTGAGAAAATACAAGGTAAAAAC 58.281 34.615 0.00 0.00 0.00 2.43
3587 5148 7.562088 TGGGTGAGAAAATACAAGGTAAAAACT 59.438 33.333 0.00 0.00 0.00 2.66
3588 5149 9.070179 GGGTGAGAAAATACAAGGTAAAAACTA 57.930 33.333 0.00 0.00 0.00 2.24
3595 5156 9.940166 AAAATACAAGGTAAAAACTAACGTCTG 57.060 29.630 0.00 0.00 0.00 3.51
3596 5157 8.667076 AATACAAGGTAAAAACTAACGTCTGT 57.333 30.769 0.00 0.00 0.00 3.41
3597 5158 9.762933 AATACAAGGTAAAAACTAACGTCTGTA 57.237 29.630 0.00 0.00 0.00 2.74
3598 5159 9.762933 ATACAAGGTAAAAACTAACGTCTGTAA 57.237 29.630 0.00 0.00 0.00 2.41
3599 5160 8.491331 ACAAGGTAAAAACTAACGTCTGTAAA 57.509 30.769 0.00 0.00 0.00 2.01
3600 5161 9.112725 ACAAGGTAAAAACTAACGTCTGTAAAT 57.887 29.630 0.00 0.00 0.00 1.40
3601 5162 9.940166 CAAGGTAAAAACTAACGTCTGTAAATT 57.060 29.630 0.00 0.00 0.00 1.82
3610 5171 9.887406 AACTAACGTCTGTAAATTATTTGGTTG 57.113 29.630 0.00 0.00 0.00 3.77
3611 5172 8.019094 ACTAACGTCTGTAAATTATTTGGTTGC 58.981 33.333 0.00 0.00 0.00 4.17
3612 5173 5.705902 ACGTCTGTAAATTATTTGGTTGCC 58.294 37.500 0.00 0.00 0.00 4.52
3613 5174 5.099575 CGTCTGTAAATTATTTGGTTGCCC 58.900 41.667 0.00 0.00 0.00 5.36
3614 5175 5.099575 GTCTGTAAATTATTTGGTTGCCCG 58.900 41.667 0.00 0.00 0.00 6.13
3615 5176 3.851098 TGTAAATTATTTGGTTGCCCGC 58.149 40.909 0.00 0.00 0.00 6.13
3616 5177 3.258372 TGTAAATTATTTGGTTGCCCGCA 59.742 39.130 0.00 0.00 0.00 5.69
3617 5178 3.625649 AAATTATTTGGTTGCCCGCAT 57.374 38.095 0.00 0.00 0.00 4.73
3618 5179 3.625649 AATTATTTGGTTGCCCGCATT 57.374 38.095 0.00 0.00 0.00 3.56
3619 5180 2.663826 TTATTTGGTTGCCCGCATTC 57.336 45.000 0.00 0.00 0.00 2.67
3620 5181 1.550327 TATTTGGTTGCCCGCATTCA 58.450 45.000 0.00 0.00 0.00 2.57
3632 5193 1.358046 GCATTCAGGCGAGCATTCC 59.642 57.895 0.00 0.00 0.00 3.01
3644 5205 4.431131 CATTCCTGCCAGCCCCGT 62.431 66.667 0.00 0.00 0.00 5.28
3668 5229 0.944311 AACTGGTTGCTAGCGTCACG 60.944 55.000 10.77 0.00 0.00 4.35
3685 5246 1.371183 CGGCCACAGAGAAAGTCCA 59.629 57.895 2.24 0.00 0.00 4.02
3700 5261 0.535335 GTCCATGTGGAGGAGCGTTA 59.465 55.000 1.07 0.00 46.49 3.18
3711 5272 0.466124 GGAGCGTTAAGGCAGAGGAT 59.534 55.000 21.21 0.00 34.64 3.24
3741 5302 0.955428 AAATGCAGTGCGTGTCGGAT 60.955 50.000 11.38 0.00 0.00 4.18
3748 5309 0.739462 GTGCGTGTCGGATCATGGAA 60.739 55.000 0.00 0.00 0.00 3.53
3756 5318 1.065491 TCGGATCATGGAAACTGTGGG 60.065 52.381 0.00 0.00 0.00 4.61
3757 5319 1.340017 CGGATCATGGAAACTGTGGGT 60.340 52.381 0.00 0.00 0.00 4.51
3825 5387 4.467084 GAGCGACCCCATTGGCGA 62.467 66.667 5.52 0.00 37.83 5.54
3865 5427 0.179161 CCTCGTCGTCGCAGAGAAAT 60.179 55.000 15.29 0.00 36.95 2.17
3873 5435 0.320334 TCGCAGAGAAATTCCGCACA 60.320 50.000 0.00 0.00 0.00 4.57
3874 5436 0.729116 CGCAGAGAAATTCCGCACAT 59.271 50.000 0.00 0.00 0.00 3.21
3887 5449 1.350193 CGCACATAGACAGTGGACAC 58.650 55.000 0.00 0.00 37.46 3.67
3973 5537 1.153901 GATGAACGACGCCGGAGAA 60.154 57.895 13.83 0.00 40.78 2.87
4012 5577 1.374947 CGGGCAAGGAGGTCAAGAA 59.625 57.895 0.00 0.00 0.00 2.52
4035 5600 3.487202 GCGCCAGCGTCGAAATGA 61.487 61.111 14.22 0.00 42.09 2.57
4043 5608 3.364864 CCAGCGTCGAAATGAATGAACAA 60.365 43.478 0.00 0.00 0.00 2.83
4059 5624 0.972883 ACAAGAGGGCTCTGAGACAC 59.027 55.000 13.47 5.86 40.36 3.67
4067 5632 0.246086 GCTCTGAGACACAGGACAGG 59.754 60.000 9.28 0.00 45.76 4.00
4080 5654 3.777522 ACAGGACAGGGGAGAAGAAATAG 59.222 47.826 0.00 0.00 0.00 1.73
4150 5763 2.806288 ACTTGCAACACGAATATCGC 57.194 45.000 0.00 0.00 45.12 4.58
4176 5790 4.501571 GGAACTGCGAGATTAGGCTATTGA 60.502 45.833 0.00 0.00 0.00 2.57
4177 5791 3.983741 ACTGCGAGATTAGGCTATTGAC 58.016 45.455 0.00 0.00 0.00 3.18
4182 5796 4.024809 GCGAGATTAGGCTATTGACCAAAC 60.025 45.833 0.00 0.00 0.00 2.93
4207 5821 1.300481 TTCAAACGGTCGATTGTGCA 58.700 45.000 11.85 0.00 31.22 4.57
4221 5835 1.705256 TGTGCACGACGAATCTAACC 58.295 50.000 13.13 0.00 0.00 2.85
4246 5860 6.575162 AGTTCGTCCAAAATAGCTTCAAAT 57.425 33.333 0.00 0.00 0.00 2.32
4313 5927 5.491982 GGATCGCCTGAATAGAACCATAAT 58.508 41.667 0.00 0.00 0.00 1.28
4317 5931 7.239763 TCGCCTGAATAGAACCATAATATCA 57.760 36.000 0.00 0.00 0.00 2.15
4338 5952 5.448438 TCAATGTGCATCTTTTTCGTGTAC 58.552 37.500 0.00 0.00 0.00 2.90
4339 5953 3.513462 TGTGCATCTTTTTCGTGTACG 57.487 42.857 0.00 0.00 41.45 3.67
4376 5990 2.483877 TCGAAGCACCATTGTGTTGATC 59.516 45.455 0.00 0.00 44.65 2.92
4399 6013 3.119319 GAGGGGAGAAGGAAGAAAGGAT 58.881 50.000 0.00 0.00 0.00 3.24
4408 6022 8.495260 GGAGAAGGAAGAAAGGATATTAGGAAA 58.505 37.037 0.00 0.00 0.00 3.13
4421 6036 7.849904 AGGATATTAGGAAAAGGTTAGTGGAGA 59.150 37.037 0.00 0.00 0.00 3.71
4439 6058 6.155221 AGTGGAGATAGAAGAAGCATGTACAA 59.845 38.462 0.00 0.00 0.00 2.41
4441 6060 7.334421 GTGGAGATAGAAGAAGCATGTACAAAA 59.666 37.037 0.00 0.00 0.00 2.44
4456 6075 0.804989 CAAAACTCGCATCCCTCCAC 59.195 55.000 0.00 0.00 0.00 4.02
4457 6076 0.400213 AAAACTCGCATCCCTCCACA 59.600 50.000 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 9.420551 GTTACAAATACAGCTAGTTTACACTCT 57.579 33.333 0.00 0.00 34.06 3.24
226 235 1.741394 GCAGCATCCAAGCCAATTTCC 60.741 52.381 0.00 0.00 34.23 3.13
298 333 5.008217 GTGGAGTAGCTGACTGTAGATGTAG 59.992 48.000 0.00 0.00 39.06 2.74
344 508 0.963856 ACACGAGCGATCCAGTGGTA 60.964 55.000 9.54 0.00 38.78 3.25
366 530 5.067283 GCTTACCATTTCGGATACATTTGGT 59.933 40.000 0.00 0.00 39.25 3.67
379 543 1.176527 TGCCAGCAGCTTACCATTTC 58.823 50.000 0.00 0.00 44.23 2.17
382 546 1.318158 GCTTGCCAGCAGCTTACCAT 61.318 55.000 4.63 0.00 46.49 3.55
384 548 2.880648 GCTTGCCAGCAGCTTACC 59.119 61.111 4.63 0.00 46.49 2.85
415 579 2.284625 ATCGTCCACCCTGCCTCA 60.285 61.111 0.00 0.00 0.00 3.86
491 661 3.118454 CAACTGCGGCACCGGTAG 61.118 66.667 6.87 2.52 40.19 3.18
584 756 0.906775 GGGATCCTCGTGTTTACCCA 59.093 55.000 12.58 0.00 36.27 4.51
639 812 5.481200 AATTCGTTTCTGATCATGAGCAG 57.519 39.130 30.65 30.65 45.52 4.24
668 841 0.108138 ACTCAAGTATGGGCGTGCTC 60.108 55.000 0.00 0.00 0.00 4.26
685 858 3.493350 CCGCATCCACTAGATTTAGCACT 60.493 47.826 0.00 0.00 30.59 4.40
691 864 1.668419 GCACCGCATCCACTAGATTT 58.332 50.000 0.00 0.00 30.59 2.17
724 897 1.264295 GACTGTCCCTACCGGTCTTT 58.736 55.000 12.40 0.00 0.00 2.52
729 902 1.654954 CTCGTGACTGTCCCTACCGG 61.655 65.000 0.00 0.00 0.00 5.28
835 1019 1.153939 CTGAGAGCGACAGGAACGG 60.154 63.158 0.00 0.00 0.00 4.44
903 1100 2.437359 GGCTGCAGATGCGAGGTT 60.437 61.111 20.43 0.00 45.83 3.50
925 1122 0.813610 CGGACGCATCCTGGCAATTA 60.814 55.000 0.00 0.00 43.73 1.40
1019 1216 3.902086 GGGAGCGTACGCCTCTCC 61.902 72.222 34.88 31.68 44.28 3.71
1131 1333 0.973632 AAAGGAATTTTCACGGGGGC 59.026 50.000 0.00 0.00 0.00 5.80
1154 1376 3.571401 AGAAACCAATTGAACCAGCAGAG 59.429 43.478 7.12 0.00 0.00 3.35
1171 1395 9.807649 ATTGGTTAAAATCATATGCAGAGAAAC 57.192 29.630 0.00 0.00 0.00 2.78
1179 1403 6.148150 CCATGCCATTGGTTAAAATCATATGC 59.852 38.462 4.26 0.00 31.74 3.14
1181 1405 7.615039 TCCATGCCATTGGTTAAAATCATAT 57.385 32.000 4.26 0.00 38.01 1.78
1195 1429 1.899814 GCCATCATCATCCATGCCATT 59.100 47.619 0.00 0.00 31.70 3.16
1204 1438 6.538021 AGAATTAATAGCGAGCCATCATCATC 59.462 38.462 0.00 0.00 0.00 2.92
1205 1439 6.315642 CAGAATTAATAGCGAGCCATCATCAT 59.684 38.462 0.00 0.00 0.00 2.45
1206 1440 5.640783 CAGAATTAATAGCGAGCCATCATCA 59.359 40.000 0.00 0.00 0.00 3.07
1214 1448 2.808543 CCCACCAGAATTAATAGCGAGC 59.191 50.000 0.00 0.00 0.00 5.03
1228 1462 2.438434 GACGGCAATCCCCACCAG 60.438 66.667 0.00 0.00 0.00 4.00
1277 1511 1.117142 TTCCCGTCGAAGTCAAGGGT 61.117 55.000 0.00 0.00 42.57 4.34
1380 1618 0.656785 CAGCCGGTCGAGTAGTACTC 59.343 60.000 18.77 18.77 41.71 2.59
1385 1626 3.644884 ATTAATCAGCCGGTCGAGTAG 57.355 47.619 1.90 0.00 0.00 2.57
1388 1629 4.369182 ACTAAATTAATCAGCCGGTCGAG 58.631 43.478 1.90 0.00 0.00 4.04
1389 1630 4.395959 ACTAAATTAATCAGCCGGTCGA 57.604 40.909 1.90 0.00 0.00 4.20
1390 1631 5.479716 AAACTAAATTAATCAGCCGGTCG 57.520 39.130 1.90 0.00 0.00 4.79
1391 1632 7.982224 AGTAAAACTAAATTAATCAGCCGGTC 58.018 34.615 1.90 0.00 0.00 4.79
1392 1633 7.201582 CGAGTAAAACTAAATTAATCAGCCGGT 60.202 37.037 1.90 0.00 30.09 5.28
1394 1635 7.844653 GTCGAGTAAAACTAAATTAATCAGCCG 59.155 37.037 0.00 0.00 30.09 5.52
1395 1636 8.121086 GGTCGAGTAAAACTAAATTAATCAGCC 58.879 37.037 0.00 0.00 30.09 4.85
1396 1637 7.844653 CGGTCGAGTAAAACTAAATTAATCAGC 59.155 37.037 0.00 0.00 30.09 4.26
1446 1719 0.250234 CTCGGTTCCTGCATGAAGGA 59.750 55.000 19.51 19.51 44.88 3.36
1447 1720 0.036010 ACTCGGTTCCTGCATGAAGG 60.036 55.000 14.45 14.45 38.84 3.46
1448 1721 1.734465 GAACTCGGTTCCTGCATGAAG 59.266 52.381 4.51 0.00 36.65 3.02
1480 1754 1.038130 AGGAGATGCCGTAGAACGCT 61.038 55.000 0.00 0.00 40.91 5.07
1710 1984 4.703575 AGTGATTATTGATTGCAGTGCACT 59.296 37.500 19.58 15.25 38.71 4.40
1711 1985 4.990257 AGTGATTATTGATTGCAGTGCAC 58.010 39.130 19.58 9.40 38.71 4.57
1717 1994 3.242837 GCGCAGAGTGATTATTGATTGCA 60.243 43.478 0.30 0.00 0.00 4.08
1750 2028 3.392285 TCCATTGGGACATGACATAGAGG 59.608 47.826 0.00 0.00 38.64 3.69
1817 2107 4.030216 TCCAGGCATGATGTAGAGTTGTA 58.970 43.478 0.00 0.00 0.00 2.41
1818 2108 2.840038 TCCAGGCATGATGTAGAGTTGT 59.160 45.455 0.00 0.00 0.00 3.32
1819 2109 3.464907 CTCCAGGCATGATGTAGAGTTG 58.535 50.000 0.00 0.00 0.00 3.16
1820 2110 2.158842 GCTCCAGGCATGATGTAGAGTT 60.159 50.000 0.00 0.00 41.35 3.01
1821 2111 1.415659 GCTCCAGGCATGATGTAGAGT 59.584 52.381 0.00 0.00 41.35 3.24
1822 2112 2.166821 GCTCCAGGCATGATGTAGAG 57.833 55.000 0.00 0.00 41.35 2.43
1854 2144 6.885918 TCCATAATGCTGTCTGAATTTTCTCA 59.114 34.615 0.00 0.00 0.00 3.27
1926 2261 1.226575 TACGCCGAGAATGCTGTCG 60.227 57.895 0.00 0.00 38.05 4.35
2140 2480 3.133362 ACACGTACCAGTTGAAGAAGGAA 59.867 43.478 0.00 0.00 0.00 3.36
2200 2540 0.392998 GATCCTGCACCCACACGATT 60.393 55.000 0.00 0.00 0.00 3.34
2299 2639 3.524541 AGTTCGTTGAAACCTGTACGTT 58.475 40.909 0.00 0.00 35.63 3.99
2437 2777 3.369892 CGATCCTCTCAACACCCTTCATT 60.370 47.826 0.00 0.00 0.00 2.57
2460 2800 0.390340 CCGGAGATCAGTGGTGTGTG 60.390 60.000 0.00 0.00 0.00 3.82
2534 2993 4.468765 ACAGATCCATCTTGAGTGAGTG 57.531 45.455 0.00 0.00 34.22 3.51
2537 2996 3.262660 AGCAACAGATCCATCTTGAGTGA 59.737 43.478 0.00 0.00 34.22 3.41
2788 3251 4.125695 GGAGCCGACGGTAGCGTT 62.126 66.667 22.26 5.10 0.00 4.84
2925 3388 0.183731 TCCTCTGCAGCTCCGAGATA 59.816 55.000 9.47 0.00 0.00 1.98
3327 3808 1.538047 TCAGATTCAGGCAACCAAGC 58.462 50.000 0.00 0.00 37.17 4.01
3402 4962 1.804748 CTACCCACGGAAAAGCAACTC 59.195 52.381 0.00 0.00 0.00 3.01
3442 5003 4.445453 TGCTCATGAATCGTGCTTTATCT 58.555 39.130 0.00 0.00 0.00 1.98
3443 5004 4.801147 TGCTCATGAATCGTGCTTTATC 57.199 40.909 0.00 0.00 0.00 1.75
3445 5006 6.048509 TCTATTGCTCATGAATCGTGCTTTA 58.951 36.000 0.00 0.00 0.00 1.85
3446 5007 4.877823 TCTATTGCTCATGAATCGTGCTTT 59.122 37.500 0.00 0.00 0.00 3.51
3447 5008 4.445453 TCTATTGCTCATGAATCGTGCTT 58.555 39.130 0.00 0.00 0.00 3.91
3448 5009 4.056740 CTCTATTGCTCATGAATCGTGCT 58.943 43.478 0.00 0.00 0.00 4.40
3449 5010 4.053983 TCTCTATTGCTCATGAATCGTGC 58.946 43.478 0.00 0.00 0.00 5.34
3450 5011 6.594284 TTTCTCTATTGCTCATGAATCGTG 57.406 37.500 0.00 0.00 0.00 4.35
3451 5012 6.293298 GCATTTCTCTATTGCTCATGAATCGT 60.293 38.462 0.00 0.00 33.61 3.73
3452 5013 6.078479 GCATTTCTCTATTGCTCATGAATCG 58.922 40.000 0.00 0.00 33.61 3.34
3453 5014 6.207025 AGGCATTTCTCTATTGCTCATGAATC 59.793 38.462 0.00 0.00 36.62 2.52
3454 5015 6.016192 CAGGCATTTCTCTATTGCTCATGAAT 60.016 38.462 0.00 0.00 36.62 2.57
3455 5016 5.298527 CAGGCATTTCTCTATTGCTCATGAA 59.701 40.000 0.00 0.00 36.62 2.57
3456 5017 4.820173 CAGGCATTTCTCTATTGCTCATGA 59.180 41.667 0.00 0.00 36.62 3.07
3457 5018 4.556898 GCAGGCATTTCTCTATTGCTCATG 60.557 45.833 0.00 0.00 36.62 3.07
3458 5019 3.568853 GCAGGCATTTCTCTATTGCTCAT 59.431 43.478 0.00 0.00 36.62 2.90
3459 5020 2.947652 GCAGGCATTTCTCTATTGCTCA 59.052 45.455 0.00 0.00 36.62 4.26
3460 5021 2.947652 TGCAGGCATTTCTCTATTGCTC 59.052 45.455 0.00 0.00 36.62 4.26
3461 5022 3.008835 TGCAGGCATTTCTCTATTGCT 57.991 42.857 0.00 0.00 36.62 3.91
3462 5023 3.788333 TTGCAGGCATTTCTCTATTGC 57.212 42.857 0.00 0.00 35.64 3.56
3463 5024 6.392354 TCTTTTTGCAGGCATTTCTCTATTG 58.608 36.000 0.00 0.00 0.00 1.90
3464 5025 6.594788 TCTTTTTGCAGGCATTTCTCTATT 57.405 33.333 0.00 0.00 0.00 1.73
3465 5026 6.606395 AGATCTTTTTGCAGGCATTTCTCTAT 59.394 34.615 0.00 0.00 0.00 1.98
3466 5027 5.948162 AGATCTTTTTGCAGGCATTTCTCTA 59.052 36.000 0.00 0.00 0.00 2.43
3467 5028 4.771054 AGATCTTTTTGCAGGCATTTCTCT 59.229 37.500 0.00 0.00 0.00 3.10
3468 5029 4.863131 CAGATCTTTTTGCAGGCATTTCTC 59.137 41.667 0.00 0.00 0.00 2.87
3469 5030 4.817517 CAGATCTTTTTGCAGGCATTTCT 58.182 39.130 0.00 0.00 0.00 2.52
3470 5031 3.370061 GCAGATCTTTTTGCAGGCATTTC 59.630 43.478 0.00 0.00 40.02 2.17
3471 5032 3.332034 GCAGATCTTTTTGCAGGCATTT 58.668 40.909 0.00 0.00 40.02 2.32
3472 5033 2.354403 GGCAGATCTTTTTGCAGGCATT 60.354 45.455 6.95 0.00 42.02 3.56
3473 5034 1.206371 GGCAGATCTTTTTGCAGGCAT 59.794 47.619 6.95 0.00 42.02 4.40
3474 5035 0.604578 GGCAGATCTTTTTGCAGGCA 59.395 50.000 6.95 0.00 42.02 4.75
3475 5036 0.604578 TGGCAGATCTTTTTGCAGGC 59.395 50.000 6.95 0.91 42.02 4.85
3476 5037 3.259064 CAATGGCAGATCTTTTTGCAGG 58.741 45.455 6.95 0.00 42.02 4.85
3477 5038 2.671396 GCAATGGCAGATCTTTTTGCAG 59.329 45.455 17.39 0.00 42.02 4.41
3478 5039 2.690786 GCAATGGCAGATCTTTTTGCA 58.309 42.857 17.39 0.00 42.02 4.08
3488 5049 9.659503 GAAATGGTTCACTATTGCAATGGCAGA 62.660 40.741 22.27 16.68 41.50 4.26
3489 5050 7.609033 GAAATGGTTCACTATTGCAATGGCAG 61.609 42.308 22.27 13.64 41.50 4.85
3490 5051 5.854049 GAAATGGTTCACTATTGCAATGGCA 60.854 40.000 22.27 11.74 40.01 4.92
3491 5052 3.806625 ATGGTTCACTATTGCAATGGC 57.193 42.857 22.27 5.93 41.68 4.40
3492 5053 4.799949 CGAAATGGTTCACTATTGCAATGG 59.200 41.667 22.27 21.13 32.89 3.16
3493 5054 4.799949 CCGAAATGGTTCACTATTGCAATG 59.200 41.667 22.27 13.69 32.89 2.82
3494 5055 4.142182 CCCGAAATGGTTCACTATTGCAAT 60.142 41.667 17.56 17.56 35.15 3.56
3495 5056 3.192422 CCCGAAATGGTTCACTATTGCAA 59.808 43.478 0.00 0.00 35.15 4.08
3496 5057 2.752354 CCCGAAATGGTTCACTATTGCA 59.248 45.455 0.00 0.00 35.15 4.08
3497 5058 2.479560 GCCCGAAATGGTTCACTATTGC 60.480 50.000 0.00 0.00 35.15 3.56
3498 5059 2.223249 CGCCCGAAATGGTTCACTATTG 60.223 50.000 0.00 0.00 35.15 1.90
3499 5060 2.014128 CGCCCGAAATGGTTCACTATT 58.986 47.619 0.00 0.00 35.15 1.73
3500 5061 1.065709 ACGCCCGAAATGGTTCACTAT 60.066 47.619 0.00 0.00 35.15 2.12
3501 5062 0.322322 ACGCCCGAAATGGTTCACTA 59.678 50.000 0.00 0.00 35.15 2.74
3502 5063 1.072505 ACGCCCGAAATGGTTCACT 59.927 52.632 0.00 0.00 35.15 3.41
3503 5064 1.209127 CACGCCCGAAATGGTTCAC 59.791 57.895 0.00 0.00 35.15 3.18
3504 5065 0.820074 AACACGCCCGAAATGGTTCA 60.820 50.000 0.00 0.00 35.15 3.18
3505 5066 0.312729 AAACACGCCCGAAATGGTTC 59.687 50.000 0.00 0.00 35.15 3.62
3506 5067 0.031449 CAAACACGCCCGAAATGGTT 59.969 50.000 0.00 0.00 35.15 3.67
3507 5068 1.657556 CAAACACGCCCGAAATGGT 59.342 52.632 0.00 0.00 35.15 3.55
3508 5069 1.080839 CCAAACACGCCCGAAATGG 60.081 57.895 0.00 0.00 37.55 3.16
3509 5070 1.732683 GCCAAACACGCCCGAAATG 60.733 57.895 0.00 0.00 0.00 2.32
3510 5071 2.141122 CTGCCAAACACGCCCGAAAT 62.141 55.000 0.00 0.00 0.00 2.17
3511 5072 2.829003 TGCCAAACACGCCCGAAA 60.829 55.556 0.00 0.00 0.00 3.46
3512 5073 3.283684 CTGCCAAACACGCCCGAA 61.284 61.111 0.00 0.00 0.00 4.30
3517 5078 4.264638 AACGGCTGCCAAACACGC 62.265 61.111 20.29 0.00 0.00 5.34
3518 5079 2.051345 GAACGGCTGCCAAACACG 60.051 61.111 20.29 5.82 0.00 4.49
3519 5080 1.008538 CTGAACGGCTGCCAAACAC 60.009 57.895 20.29 5.52 0.00 3.32
3520 5081 2.192861 CCTGAACGGCTGCCAAACA 61.193 57.895 20.29 13.15 0.00 2.83
3521 5082 2.193536 ACCTGAACGGCTGCCAAAC 61.194 57.895 20.29 9.11 35.61 2.93
3522 5083 2.192861 CACCTGAACGGCTGCCAAA 61.193 57.895 20.29 0.00 35.61 3.28
3523 5084 2.594303 CACCTGAACGGCTGCCAA 60.594 61.111 20.29 0.00 35.61 4.52
3526 5087 3.730761 CTGCACCTGAACGGCTGC 61.731 66.667 0.00 0.00 39.07 5.25
3527 5088 3.730761 GCTGCACCTGAACGGCTG 61.731 66.667 0.00 0.00 35.24 4.85
3537 5098 2.182842 CGATTAGCCAGGCTGCACC 61.183 63.158 25.59 9.33 40.10 5.01
3538 5099 2.182842 CCGATTAGCCAGGCTGCAC 61.183 63.158 25.59 13.15 40.10 4.57
3539 5100 2.190313 CCGATTAGCCAGGCTGCA 59.810 61.111 25.59 11.10 40.10 4.41
3540 5101 1.596477 CTCCGATTAGCCAGGCTGC 60.596 63.158 25.59 12.14 40.10 5.25
3541 5102 1.070445 CCTCCGATTAGCCAGGCTG 59.930 63.158 25.59 7.75 40.10 4.85
3542 5103 2.812619 GCCTCCGATTAGCCAGGCT 61.813 63.158 20.63 20.63 46.88 4.58
3543 5104 2.281139 GCCTCCGATTAGCCAGGC 60.281 66.667 1.84 1.84 44.63 4.85
3544 5105 1.070445 CAGCCTCCGATTAGCCAGG 59.930 63.158 0.00 0.00 0.00 4.45
3545 5106 1.070445 CCAGCCTCCGATTAGCCAG 59.930 63.158 0.00 0.00 0.00 4.85
3546 5107 2.443394 CCCAGCCTCCGATTAGCCA 61.443 63.158 0.00 0.00 0.00 4.75
3547 5108 2.427753 CCCAGCCTCCGATTAGCC 59.572 66.667 0.00 0.00 0.00 3.93
3548 5109 1.227674 CACCCAGCCTCCGATTAGC 60.228 63.158 0.00 0.00 0.00 3.09
3549 5110 0.390860 CTCACCCAGCCTCCGATTAG 59.609 60.000 0.00 0.00 0.00 1.73
3550 5111 0.032515 TCTCACCCAGCCTCCGATTA 60.033 55.000 0.00 0.00 0.00 1.75
3551 5112 0.909610 TTCTCACCCAGCCTCCGATT 60.910 55.000 0.00 0.00 0.00 3.34
3552 5113 0.909610 TTTCTCACCCAGCCTCCGAT 60.910 55.000 0.00 0.00 0.00 4.18
3553 5114 1.125093 TTTTCTCACCCAGCCTCCGA 61.125 55.000 0.00 0.00 0.00 4.55
3554 5115 0.035056 ATTTTCTCACCCAGCCTCCG 60.035 55.000 0.00 0.00 0.00 4.63
3555 5116 2.026262 TGTATTTTCTCACCCAGCCTCC 60.026 50.000 0.00 0.00 0.00 4.30
3556 5117 3.350219 TGTATTTTCTCACCCAGCCTC 57.650 47.619 0.00 0.00 0.00 4.70
3557 5118 3.562176 CCTTGTATTTTCTCACCCAGCCT 60.562 47.826 0.00 0.00 0.00 4.58
3558 5119 2.755103 CCTTGTATTTTCTCACCCAGCC 59.245 50.000 0.00 0.00 0.00 4.85
3559 5120 3.421844 ACCTTGTATTTTCTCACCCAGC 58.578 45.455 0.00 0.00 0.00 4.85
3560 5121 7.519032 TTTTACCTTGTATTTTCTCACCCAG 57.481 36.000 0.00 0.00 0.00 4.45
3561 5122 7.562088 AGTTTTTACCTTGTATTTTCTCACCCA 59.438 33.333 0.00 0.00 0.00 4.51
3562 5123 7.948357 AGTTTTTACCTTGTATTTTCTCACCC 58.052 34.615 0.00 0.00 0.00 4.61
3569 5130 9.940166 CAGACGTTAGTTTTTACCTTGTATTTT 57.060 29.630 0.00 0.00 0.00 1.82
3570 5131 9.112725 ACAGACGTTAGTTTTTACCTTGTATTT 57.887 29.630 0.00 0.00 0.00 1.40
3571 5132 8.667076 ACAGACGTTAGTTTTTACCTTGTATT 57.333 30.769 0.00 0.00 0.00 1.89
3572 5133 9.762933 TTACAGACGTTAGTTTTTACCTTGTAT 57.237 29.630 0.00 0.00 0.00 2.29
3573 5134 9.593134 TTTACAGACGTTAGTTTTTACCTTGTA 57.407 29.630 0.00 0.00 0.00 2.41
3574 5135 8.491331 TTTACAGACGTTAGTTTTTACCTTGT 57.509 30.769 0.00 0.00 0.00 3.16
3575 5136 9.940166 AATTTACAGACGTTAGTTTTTACCTTG 57.060 29.630 0.00 0.00 0.00 3.61
3584 5145 9.887406 CAACCAAATAATTTACAGACGTTAGTT 57.113 29.630 0.00 0.00 0.00 2.24
3585 5146 8.019094 GCAACCAAATAATTTACAGACGTTAGT 58.981 33.333 0.00 0.00 0.00 2.24
3586 5147 7.483691 GGCAACCAAATAATTTACAGACGTTAG 59.516 37.037 0.00 0.00 0.00 2.34
3587 5148 7.306953 GGCAACCAAATAATTTACAGACGTTA 58.693 34.615 0.00 0.00 0.00 3.18
3588 5149 6.153756 GGCAACCAAATAATTTACAGACGTT 58.846 36.000 0.00 0.00 0.00 3.99
3589 5150 5.705902 GGCAACCAAATAATTTACAGACGT 58.294 37.500 0.00 0.00 0.00 4.34
3614 5175 1.099879 AGGAATGCTCGCCTGAATGC 61.100 55.000 0.00 0.00 32.06 3.56
3615 5176 3.091318 AGGAATGCTCGCCTGAATG 57.909 52.632 0.00 0.00 32.06 2.67
3620 5181 3.694058 CTGGCAGGAATGCTCGCCT 62.694 63.158 6.61 0.00 45.13 5.52
3640 5201 3.353836 CAACCAGTTCGCCACGGG 61.354 66.667 2.85 2.85 45.91 5.28
3644 5205 1.671054 GCTAGCAACCAGTTCGCCA 60.671 57.895 10.63 0.00 0.00 5.69
3653 5214 3.488090 GCCGTGACGCTAGCAACC 61.488 66.667 16.45 3.26 0.00 3.77
3668 5229 1.271597 ACATGGACTTTCTCTGTGGCC 60.272 52.381 0.00 0.00 0.00 5.36
3685 5246 0.107654 GCCTTAACGCTCCTCCACAT 60.108 55.000 0.00 0.00 0.00 3.21
3700 5261 1.695597 CTCCCCCATCCTCTGCCTT 60.696 63.158 0.00 0.00 0.00 4.35
3711 5272 0.846427 ACTGCATTTCTCCTCCCCCA 60.846 55.000 0.00 0.00 0.00 4.96
3741 5302 1.542328 CGTCACCCACAGTTTCCATGA 60.542 52.381 0.00 0.00 0.00 3.07
3748 5309 1.917336 AACCACCGTCACCCACAGTT 61.917 55.000 0.00 0.00 0.00 3.16
3756 5318 3.645975 CGCCACAACCACCGTCAC 61.646 66.667 0.00 0.00 0.00 3.67
3818 5380 2.495366 TAGTTCGCCACGTCGCCAAT 62.495 55.000 0.00 0.00 0.00 3.16
3820 5382 3.620300 CTAGTTCGCCACGTCGCCA 62.620 63.158 0.00 0.00 0.00 5.69
3825 5387 0.599558 TAGCAACTAGTTCGCCACGT 59.400 50.000 19.73 9.24 0.00 4.49
3865 5427 1.067142 GTCCACTGTCTATGTGCGGAA 60.067 52.381 0.00 0.00 34.38 4.30
3873 5435 2.043115 TCCTCCTGTGTCCACTGTCTAT 59.957 50.000 0.00 0.00 0.00 1.98
3874 5436 1.427753 TCCTCCTGTGTCCACTGTCTA 59.572 52.381 0.00 0.00 0.00 2.59
3887 5449 1.093159 GCACTGCATTTCTCCTCCTG 58.907 55.000 0.00 0.00 0.00 3.86
3920 5482 1.154016 CGTCCTACTGCACTGACCG 60.154 63.158 0.00 0.00 0.00 4.79
3921 5483 0.171455 CTCGTCCTACTGCACTGACC 59.829 60.000 0.00 0.00 0.00 4.02
3973 5537 3.292460 GCATCCTACTACACTGGAGTCT 58.708 50.000 0.00 0.00 32.95 3.24
4033 5598 2.639347 TCAGAGCCCTCTTGTTCATTCA 59.361 45.455 0.00 0.00 37.98 2.57
4035 5600 2.909006 TCTCAGAGCCCTCTTGTTCATT 59.091 45.455 0.00 0.00 37.98 2.57
4043 5608 0.614415 CCTGTGTCTCAGAGCCCTCT 60.614 60.000 3.43 0.00 46.27 3.69
4059 5624 4.033709 TCTATTTCTTCTCCCCTGTCCTG 58.966 47.826 0.00 0.00 0.00 3.86
4067 5632 3.190874 CGCACACTCTATTTCTTCTCCC 58.809 50.000 0.00 0.00 0.00 4.30
4080 5654 4.342964 GCAATTACGCGCACACTC 57.657 55.556 5.73 0.00 0.00 3.51
4104 5680 1.600511 TTCGCCGATCCTACTGCACA 61.601 55.000 0.00 0.00 0.00 4.57
4150 5763 1.866063 GCCTAATCTCGCAGTTCCTCG 60.866 57.143 0.00 0.00 0.00 4.63
4176 5790 4.327627 CGACCGTTTGAAATTTTGTTTGGT 59.672 37.500 0.00 0.00 0.00 3.67
4177 5791 4.563184 TCGACCGTTTGAAATTTTGTTTGG 59.437 37.500 0.00 0.00 0.00 3.28
4182 5796 5.655576 CACAATCGACCGTTTGAAATTTTG 58.344 37.500 16.92 3.60 0.00 2.44
4207 5821 3.240069 CGAACTTGGTTAGATTCGTCGT 58.760 45.455 0.00 0.00 39.21 4.34
4221 5835 5.356882 TGAAGCTATTTTGGACGAACTTG 57.643 39.130 0.00 0.00 0.00 3.16
4246 5860 9.368674 CCATAAATGCTCAATTTTGTATTCACA 57.631 29.630 0.00 0.00 39.29 3.58
4313 5927 6.252967 ACACGAAAAAGATGCACATTGATA 57.747 33.333 0.00 0.00 0.00 2.15
4317 5931 4.212425 TCGTACACGAAAAAGATGCACATT 59.788 37.500 1.21 0.00 46.30 2.71
4338 5952 7.148885 GGTGCTTCGATTAAAGATAAGATCTCG 60.149 40.741 0.00 0.00 39.08 4.04
4339 5953 7.653713 TGGTGCTTCGATTAAAGATAAGATCTC 59.346 37.037 0.00 0.00 39.08 2.75
4340 5954 7.500992 TGGTGCTTCGATTAAAGATAAGATCT 58.499 34.615 0.00 0.00 42.61 2.75
4343 5957 7.552687 ACAATGGTGCTTCGATTAAAGATAAGA 59.447 33.333 0.00 0.00 0.00 2.10
4376 5990 2.238395 CCTTTCTTCCTTCTCCCCTCTG 59.762 54.545 0.00 0.00 0.00 3.35
4399 6013 9.947189 TCTATCTCCACTAACCTTTTCCTAATA 57.053 33.333 0.00 0.00 0.00 0.98
4408 6022 5.721960 TGCTTCTTCTATCTCCACTAACCTT 59.278 40.000 0.00 0.00 0.00 3.50
4421 6036 6.183360 GCGAGTTTTGTACATGCTTCTTCTAT 60.183 38.462 0.00 0.00 0.00 1.98
4439 6058 2.066340 TGTGGAGGGATGCGAGTTT 58.934 52.632 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.