Multiple sequence alignment - TraesCS7D01G405700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G405700 chr7D 100.000 4334 0 0 1 4334 523058970 523054637 0.000000e+00 8004.0
1 TraesCS7D01G405700 chr7D 88.848 1354 151 0 1951 3304 523133810 523132457 0.000000e+00 1664.0
2 TraesCS7D01G405700 chr7D 88.080 1401 147 15 1944 3339 500773749 500775134 0.000000e+00 1644.0
3 TraesCS7D01G405700 chr7D 87.437 199 20 4 210 406 479596515 479596710 1.570000e-54 224.0
4 TraesCS7D01G405700 chr7D 83.505 97 16 0 82 178 53969219 53969123 1.660000e-14 91.6
5 TraesCS7D01G405700 chr7D 100.000 29 0 0 210 238 488791260 488791288 2.000000e-03 54.7
6 TraesCS7D01G405700 chr7A 93.799 2161 87 16 1858 3984 603331778 603329631 0.000000e+00 3205.0
7 TraesCS7D01G405700 chr7A 84.818 1864 225 38 5 1836 603333603 603331766 0.000000e+00 1821.0
8 TraesCS7D01G405700 chr7A 88.794 1401 137 17 1944 3339 566788245 566789630 0.000000e+00 1700.0
9 TraesCS7D01G405700 chr7A 88.286 1400 153 10 1951 3343 603553256 603551861 0.000000e+00 1666.0
10 TraesCS7D01G405700 chr7A 82.716 1377 182 38 1961 3299 19960377 19959019 0.000000e+00 1173.0
11 TraesCS7D01G405700 chr7B 90.820 1841 123 17 122 1945 557259280 557257469 0.000000e+00 2422.0
12 TraesCS7D01G405700 chr7B 94.627 1433 73 2 1942 3374 557257438 557256010 0.000000e+00 2217.0
13 TraesCS7D01G405700 chr7B 89.286 1400 143 4 1951 3343 557491603 557490204 0.000000e+00 1748.0
14 TraesCS7D01G405700 chr7B 88.054 1398 146 16 1944 3336 528871645 528873026 0.000000e+00 1637.0
15 TraesCS7D01G405700 chr7B 90.575 435 28 5 3417 3841 557255915 557255484 8.140000e-157 564.0
16 TraesCS7D01G405700 chr7B 76.211 908 145 35 636 1485 505367764 505368658 8.670000e-112 414.0
17 TraesCS7D01G405700 chr7B 85.859 198 25 2 210 406 505367379 505367574 1.580000e-49 207.0
18 TraesCS7D01G405700 chr7B 86.441 59 6 2 205 262 707030208 707030151 3.620000e-06 63.9
19 TraesCS7D01G405700 chr7B 100.000 29 0 0 210 238 517322184 517322212 2.000000e-03 54.7
20 TraesCS7D01G405700 chr2D 84.928 1380 187 12 1961 3322 569121055 569119679 0.000000e+00 1376.0
21 TraesCS7D01G405700 chr2D 84.866 1381 186 16 1961 3322 569153494 569152118 0.000000e+00 1371.0
22 TraesCS7D01G405700 chr2A 84.482 1379 193 13 1962 3322 708862315 708863690 0.000000e+00 1341.0
23 TraesCS7D01G405700 chr2A 84.615 117 18 0 76 192 592817311 592817195 2.740000e-22 117.0
24 TraesCS7D01G405700 chr5D 79.052 802 130 21 685 1483 111592166 111592932 2.310000e-142 516.0
25 TraesCS7D01G405700 chr4D 89.796 196 19 1 210 405 495528692 495528498 2.590000e-62 250.0
26 TraesCS7D01G405700 chr4D 84.247 146 17 5 1325 1466 488510428 488510285 2.100000e-28 137.0
27 TraesCS7D01G405700 chr4D 88.889 108 11 1 1334 1441 488501230 488501124 9.780000e-27 132.0
28 TraesCS7D01G405700 chr2B 81.683 202 29 7 4 201 102794693 102794890 1.250000e-35 161.0
29 TraesCS7D01G405700 chr1B 83.453 139 20 2 1350 1485 520473755 520473617 4.550000e-25 126.0
30 TraesCS7D01G405700 chr4B 74.294 354 54 15 1144 1483 451821029 451820699 9.850000e-22 115.0
31 TraesCS7D01G405700 chr3A 80.519 154 26 4 50 201 667199298 667199147 9.850000e-22 115.0
32 TraesCS7D01G405700 chr5A 80.537 149 21 6 1325 1466 670272957 670272810 1.650000e-19 108.0
33 TraesCS7D01G405700 chr5A 97.222 36 1 0 1150 1185 478990331 478990366 1.300000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G405700 chr7D 523054637 523058970 4333 True 8004.000000 8004 100.000000 1 4334 1 chr7D.!!$R2 4333
1 TraesCS7D01G405700 chr7D 523132457 523133810 1353 True 1664.000000 1664 88.848000 1951 3304 1 chr7D.!!$R3 1353
2 TraesCS7D01G405700 chr7D 500773749 500775134 1385 False 1644.000000 1644 88.080000 1944 3339 1 chr7D.!!$F3 1395
3 TraesCS7D01G405700 chr7A 603329631 603333603 3972 True 2513.000000 3205 89.308500 5 3984 2 chr7A.!!$R3 3979
4 TraesCS7D01G405700 chr7A 566788245 566789630 1385 False 1700.000000 1700 88.794000 1944 3339 1 chr7A.!!$F1 1395
5 TraesCS7D01G405700 chr7A 603551861 603553256 1395 True 1666.000000 1666 88.286000 1951 3343 1 chr7A.!!$R2 1392
6 TraesCS7D01G405700 chr7A 19959019 19960377 1358 True 1173.000000 1173 82.716000 1961 3299 1 chr7A.!!$R1 1338
7 TraesCS7D01G405700 chr7B 557490204 557491603 1399 True 1748.000000 1748 89.286000 1951 3343 1 chr7B.!!$R1 1392
8 TraesCS7D01G405700 chr7B 557255484 557259280 3796 True 1734.333333 2422 92.007333 122 3841 3 chr7B.!!$R3 3719
9 TraesCS7D01G405700 chr7B 528871645 528873026 1381 False 1637.000000 1637 88.054000 1944 3336 1 chr7B.!!$F2 1392
10 TraesCS7D01G405700 chr7B 505367379 505368658 1279 False 310.500000 414 81.035000 210 1485 2 chr7B.!!$F3 1275
11 TraesCS7D01G405700 chr2D 569119679 569121055 1376 True 1376.000000 1376 84.928000 1961 3322 1 chr2D.!!$R1 1361
12 TraesCS7D01G405700 chr2D 569152118 569153494 1376 True 1371.000000 1371 84.866000 1961 3322 1 chr2D.!!$R2 1361
13 TraesCS7D01G405700 chr2A 708862315 708863690 1375 False 1341.000000 1341 84.482000 1962 3322 1 chr2A.!!$F1 1360
14 TraesCS7D01G405700 chr5D 111592166 111592932 766 False 516.000000 516 79.052000 685 1483 1 chr5D.!!$F1 798

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
547 589 0.178944 TCTCCGTTCCTCTTCACCCA 60.179 55.000 0.00 0.00 0.00 4.51 F
1843 1984 0.320771 TCTTGCCGTGCCTTTCTCTC 60.321 55.000 0.00 0.00 0.00 3.20 F
2571 2777 1.063649 CAAGGCATGTGCGCTCATC 59.936 57.895 21.29 15.32 43.26 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1894 2037 1.000607 TCTAATAGCATGCGTCCGGAC 60.001 52.381 25.28 25.28 0.00 4.79 R
2871 3092 1.381872 GAGGAGAGCAGGGCTGGTA 60.382 63.158 0.00 0.00 39.88 3.25 R
4128 4431 0.169672 TCAGGCGACGTACAAGTAGC 59.830 55.000 0.00 0.00 41.10 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 8.601845 TTTCAACTCTGAAATTTGATACTCGA 57.398 30.769 0.00 0.00 44.76 4.04
48 49 6.030849 ACTCTGAAATTTGATACTCGAGACG 58.969 40.000 21.68 0.00 0.00 4.18
52 53 5.124936 TGAAATTTGATACTCGAGACGGAGA 59.875 40.000 21.68 0.94 37.49 3.71
59 60 5.357314 TGATACTCGAGACGGAGAAAAATCT 59.643 40.000 21.68 0.00 37.49 2.40
63 64 4.235360 TCGAGACGGAGAAAAATCTGAAC 58.765 43.478 0.00 0.00 0.00 3.18
91 92 8.351495 TCAGATGCAAAATTGTAAGTTTCAAC 57.649 30.769 0.00 0.00 0.00 3.18
124 125 3.874392 AAACTTAATGTGCCCTCATGC 57.126 42.857 0.00 0.00 0.00 4.06
192 193 0.890996 GGCTTAGCAAGTGTGTGCCT 60.891 55.000 6.53 0.00 46.14 4.75
275 281 8.162878 TGTAAAAACCGTTTTATACATCACCA 57.837 30.769 9.63 0.00 40.43 4.17
408 415 5.303971 CAGTTGCCCAAATGTAAAAATGGA 58.696 37.500 0.68 0.00 34.82 3.41
470 494 4.096003 CCTACCGGCACCACCTGG 62.096 72.222 0.00 0.00 42.17 4.45
477 501 3.446570 GCACCACCTGGATGCTGC 61.447 66.667 0.00 0.86 38.94 5.25
535 577 4.377760 TCTCCGCCCCTCTCCGTT 62.378 66.667 0.00 0.00 0.00 4.44
547 589 0.178944 TCTCCGTTCCTCTTCACCCA 60.179 55.000 0.00 0.00 0.00 4.51
611 661 2.668632 GAATCCTCCACCGCCACA 59.331 61.111 0.00 0.00 0.00 4.17
698 755 2.357034 GCACCGTCGCCTGAGAAA 60.357 61.111 0.00 0.00 0.00 2.52
806 863 1.153489 CGTGGGATGAGCCAGACAG 60.153 63.158 0.00 0.00 38.95 3.51
880 937 3.008375 CCACTTGAACTTCCTGGAGATCA 59.992 47.826 0.00 0.33 0.00 2.92
882 939 5.251764 CACTTGAACTTCCTGGAGATCAAT 58.748 41.667 16.27 8.26 37.66 2.57
923 980 1.739338 ATCGGTCCTGACATCGAGCC 61.739 60.000 0.00 0.00 35.07 4.70
930 987 1.983196 CTGACATCGAGCCGACGACT 61.983 60.000 0.00 0.00 44.84 4.18
955 1012 4.081642 TCAAGGAGAAGAATTAGACACGGG 60.082 45.833 0.00 0.00 0.00 5.28
1063 1120 3.547613 GGAATACGAGTTCTATGCGTCGT 60.548 47.826 1.54 1.54 46.74 4.34
1137 1219 2.611971 GGTGGTCGTGCTTGATAGTTCA 60.612 50.000 0.00 0.00 0.00 3.18
1152 1234 5.419155 TGATAGTTCAGACTCGGTGAAGAAT 59.581 40.000 0.00 0.00 37.33 2.40
1217 1299 5.770162 TCTCCGATGAGTATTCTGCAATAGA 59.230 40.000 0.00 0.00 39.75 1.98
1222 1304 8.226448 CCGATGAGTATTCTGCAATAGATTTTC 58.774 37.037 0.00 0.00 34.80 2.29
1280 1363 9.622004 CGAACTACTCTTAAGTTTGTATCAGAA 57.378 33.333 1.63 0.00 37.31 3.02
1321 1424 5.055812 TCAAGACCATGTTTGAAATTTGCC 58.944 37.500 0.00 0.00 30.84 4.52
1323 1426 6.041409 TCAAGACCATGTTTGAAATTTGCCTA 59.959 34.615 0.00 0.00 30.84 3.93
1328 1440 8.462589 ACCATGTTTGAAATTTGCCTATTTTT 57.537 26.923 0.00 0.00 0.00 1.94
1453 1594 6.855914 CGATGTAAAACTATTTTGTGTGTGCT 59.144 34.615 0.00 0.00 34.19 4.40
1468 1609 3.505680 TGTGTGCTCAAAATACATCACCC 59.494 43.478 0.00 0.00 0.00 4.61
1528 1669 7.525165 TGATAACCATAATGATGATGGACCAA 58.475 34.615 15.87 0.00 45.89 3.67
1650 1791 8.856153 TCTAGCCATTTCAATAGTACACAAAA 57.144 30.769 0.00 0.00 0.00 2.44
1651 1792 8.946085 TCTAGCCATTTCAATAGTACACAAAAG 58.054 33.333 0.00 0.00 0.00 2.27
1652 1793 7.759489 AGCCATTTCAATAGTACACAAAAGA 57.241 32.000 0.00 0.00 0.00 2.52
1723 1864 7.616313 TCAAGTAATTGTTTTGGTCTTTTGGT 58.384 30.769 2.43 0.00 0.00 3.67
1778 1919 7.507616 TCAGTATTTTGGTACAGGGTGAAAAAT 59.492 33.333 0.00 0.00 42.39 1.82
1840 1981 0.883833 CATTCTTGCCGTGCCTTTCT 59.116 50.000 0.00 0.00 0.00 2.52
1843 1984 0.320771 TCTTGCCGTGCCTTTCTCTC 60.321 55.000 0.00 0.00 0.00 3.20
1894 2037 2.475111 ACAACTAACGAACAGCGACATG 59.525 45.455 0.00 0.00 44.57 3.21
1895 2038 2.433868 ACTAACGAACAGCGACATGT 57.566 45.000 0.00 0.00 44.57 3.21
2142 2330 2.285368 TCCATCCCTGACGGCCTT 60.285 61.111 0.00 0.00 0.00 4.35
2184 2372 3.257393 CTTCTTGGAGTTCATGGAGTCG 58.743 50.000 2.62 0.00 0.00 4.18
2515 2718 3.155167 AAGGCGACGGAGATCCCC 61.155 66.667 0.00 0.00 0.00 4.81
2571 2777 1.063649 CAAGGCATGTGCGCTCATC 59.936 57.895 21.29 15.32 43.26 2.92
2583 2789 1.421485 GCTCATCTTCAACACCGCG 59.579 57.895 0.00 0.00 0.00 6.46
2871 3092 2.671070 CCGGGCATGGTCAAGACT 59.329 61.111 0.00 0.00 0.00 3.24
3322 3559 2.238144 TCCTCTCTCAAGCCCAGAATTG 59.762 50.000 0.00 0.00 0.00 2.32
3424 3672 3.562567 TGTTTACTGGTAATTTGCCGC 57.437 42.857 0.00 0.00 0.00 6.53
3451 3740 0.545071 TCCTCATGGCAGTGGTCTGA 60.545 55.000 0.00 0.00 43.76 3.27
3478 3773 5.508567 ACATGGTGTTGGATCATCACAATA 58.491 37.500 13.33 0.00 36.23 1.90
3538 3833 6.818644 TCTTATTCTTTCCATGAACCTTCTCG 59.181 38.462 0.00 0.00 0.00 4.04
3545 3840 2.555199 CATGAACCTTCTCGTGGATCC 58.445 52.381 4.20 4.20 0.00 3.36
3585 3880 9.783081 AAGAATAAAATATTGCCCCATTGATTC 57.217 29.630 0.00 0.00 0.00 2.52
3660 3955 4.944962 TCCTTCAAGTTGCATTCATACG 57.055 40.909 0.00 0.00 0.00 3.06
3675 3970 3.331150 TCATACGTTACAGCCAAAGTGG 58.669 45.455 0.00 0.00 41.55 4.00
3692 3987 3.524541 AGTGGAAAAACTGCAAAAGCTG 58.475 40.909 0.00 0.00 0.00 4.24
3706 4001 1.760192 AAGCTGAAGCATAAGCCCAG 58.240 50.000 4.90 5.81 45.16 4.45
3729 4024 7.098477 CAGATAAACATGGCATCAAAAGGAAA 58.902 34.615 0.00 0.00 0.00 3.13
3751 4046 7.068716 GGAAAGGATTTTGTACTGCCTGATAAT 59.931 37.037 0.00 0.00 39.27 1.28
3822 4117 6.273825 TGCTTGTAGATATTTCTCGAAGGAC 58.726 40.000 0.00 0.00 33.17 3.85
3873 4176 5.708948 TGCCTTTTTAGAATGTTGGATTCG 58.291 37.500 0.00 0.00 33.51 3.34
3889 4192 8.701895 TGTTGGATTCGGTTAAGTCTATCTATT 58.298 33.333 0.00 0.00 0.00 1.73
3956 4259 5.357257 GTCCAGAGCAATAATAAGGAACGA 58.643 41.667 0.00 0.00 0.00 3.85
3958 4261 5.815740 TCCAGAGCAATAATAAGGAACGAAC 59.184 40.000 0.00 0.00 0.00 3.95
3988 4291 7.252965 GGATCAGTCCTAAAGTTATTGCTTC 57.747 40.000 0.00 0.00 41.60 3.86
3989 4292 6.823689 GGATCAGTCCTAAAGTTATTGCTTCA 59.176 38.462 0.00 0.00 41.60 3.02
3990 4293 7.500559 GGATCAGTCCTAAAGTTATTGCTTCAT 59.499 37.037 0.00 0.00 41.60 2.57
3991 4294 7.849804 TCAGTCCTAAAGTTATTGCTTCATC 57.150 36.000 0.00 0.00 0.00 2.92
3992 4295 7.624549 TCAGTCCTAAAGTTATTGCTTCATCT 58.375 34.615 0.00 0.00 0.00 2.90
3993 4296 8.103305 TCAGTCCTAAAGTTATTGCTTCATCTT 58.897 33.333 0.00 0.00 0.00 2.40
3994 4297 9.383519 CAGTCCTAAAGTTATTGCTTCATCTTA 57.616 33.333 0.00 0.00 0.00 2.10
4002 4305 9.578439 AAGTTATTGCTTCATCTTATTTTCAGC 57.422 29.630 0.00 0.00 0.00 4.26
4003 4306 8.964772 AGTTATTGCTTCATCTTATTTTCAGCT 58.035 29.630 0.00 0.00 0.00 4.24
4006 4309 7.928307 TTGCTTCATCTTATTTTCAGCTAGT 57.072 32.000 0.00 0.00 0.00 2.57
4007 4310 7.928307 TGCTTCATCTTATTTTCAGCTAGTT 57.072 32.000 0.00 0.00 0.00 2.24
4008 4311 9.448438 TTGCTTCATCTTATTTTCAGCTAGTTA 57.552 29.630 0.00 0.00 0.00 2.24
4009 4312 9.618890 TGCTTCATCTTATTTTCAGCTAGTTAT 57.381 29.630 0.00 0.00 0.00 1.89
4010 4313 9.875675 GCTTCATCTTATTTTCAGCTAGTTATG 57.124 33.333 0.00 0.00 0.00 1.90
4023 4326 9.502091 TTCAGCTAGTTATGTTTACATTCTTGT 57.498 29.630 0.02 0.00 39.98 3.16
4039 4342 8.958119 ACATTCTTGTAACTCAGTTTAACTGA 57.042 30.769 23.99 23.99 42.77 3.41
4053 4356 6.583562 AGTTTAACTGAGCTCTTGTGTAAGT 58.416 36.000 16.19 4.98 35.38 2.24
4054 4357 6.480320 AGTTTAACTGAGCTCTTGTGTAAGTG 59.520 38.462 16.19 0.00 35.38 3.16
4055 4358 4.408182 AACTGAGCTCTTGTGTAAGTGT 57.592 40.909 16.19 0.00 35.38 3.55
4056 4359 5.531122 AACTGAGCTCTTGTGTAAGTGTA 57.469 39.130 16.19 0.00 35.38 2.90
4057 4360 5.531122 ACTGAGCTCTTGTGTAAGTGTAA 57.469 39.130 16.19 0.00 35.38 2.41
4058 4361 5.290386 ACTGAGCTCTTGTGTAAGTGTAAC 58.710 41.667 16.19 0.00 35.38 2.50
4059 4362 4.628074 TGAGCTCTTGTGTAAGTGTAACC 58.372 43.478 16.19 0.00 37.80 2.85
4060 4363 3.995048 GAGCTCTTGTGTAAGTGTAACCC 59.005 47.826 6.43 0.00 37.80 4.11
4061 4364 2.735134 GCTCTTGTGTAAGTGTAACCCG 59.265 50.000 0.00 0.00 37.80 5.28
4062 4365 3.553508 GCTCTTGTGTAAGTGTAACCCGA 60.554 47.826 0.00 0.00 37.80 5.14
4063 4366 4.235360 CTCTTGTGTAAGTGTAACCCGAG 58.765 47.826 0.00 0.00 37.80 4.63
4064 4367 3.890756 TCTTGTGTAAGTGTAACCCGAGA 59.109 43.478 0.00 0.00 37.80 4.04
4065 4368 3.648339 TGTGTAAGTGTAACCCGAGAC 57.352 47.619 0.00 0.00 37.80 3.36
4066 4369 2.957680 TGTGTAAGTGTAACCCGAGACA 59.042 45.455 0.00 0.00 37.80 3.41
4067 4370 3.384146 TGTGTAAGTGTAACCCGAGACAA 59.616 43.478 0.00 0.00 37.80 3.18
4068 4371 3.737774 GTGTAAGTGTAACCCGAGACAAC 59.262 47.826 0.00 0.00 37.80 3.32
4069 4372 3.638160 TGTAAGTGTAACCCGAGACAACT 59.362 43.478 0.00 0.00 37.80 3.16
4070 4373 2.814280 AGTGTAACCCGAGACAACTG 57.186 50.000 0.00 0.00 37.80 3.16
4071 4374 1.145803 GTGTAACCCGAGACAACTGC 58.854 55.000 0.00 0.00 0.00 4.40
4072 4375 1.045407 TGTAACCCGAGACAACTGCT 58.955 50.000 0.00 0.00 0.00 4.24
4073 4376 2.029649 GTGTAACCCGAGACAACTGCTA 60.030 50.000 0.00 0.00 0.00 3.49
4074 4377 2.829720 TGTAACCCGAGACAACTGCTAT 59.170 45.455 0.00 0.00 0.00 2.97
4075 4378 4.018490 TGTAACCCGAGACAACTGCTATA 58.982 43.478 0.00 0.00 0.00 1.31
4076 4379 4.647853 TGTAACCCGAGACAACTGCTATAT 59.352 41.667 0.00 0.00 0.00 0.86
4077 4380 5.829391 TGTAACCCGAGACAACTGCTATATA 59.171 40.000 0.00 0.00 0.00 0.86
4078 4381 5.864418 AACCCGAGACAACTGCTATATAA 57.136 39.130 0.00 0.00 0.00 0.98
4079 4382 5.455056 ACCCGAGACAACTGCTATATAAG 57.545 43.478 0.00 0.00 0.00 1.73
4080 4383 4.894114 ACCCGAGACAACTGCTATATAAGT 59.106 41.667 0.00 0.00 0.00 2.24
4081 4384 5.363005 ACCCGAGACAACTGCTATATAAGTT 59.637 40.000 0.00 0.00 37.09 2.66
4089 4392 7.959689 CAACTGCTATATAAGTTGCTCTGAT 57.040 36.000 12.26 0.00 44.76 2.90
4091 4394 9.138062 CAACTGCTATATAAGTTGCTCTGATAG 57.862 37.037 12.26 0.00 44.76 2.08
4092 4395 8.415950 ACTGCTATATAAGTTGCTCTGATAGT 57.584 34.615 0.00 0.00 0.00 2.12
4093 4396 8.865090 ACTGCTATATAAGTTGCTCTGATAGTT 58.135 33.333 0.00 0.00 0.00 2.24
4094 4397 9.138062 CTGCTATATAAGTTGCTCTGATAGTTG 57.862 37.037 0.00 0.00 0.00 3.16
4095 4398 8.860088 TGCTATATAAGTTGCTCTGATAGTTGA 58.140 33.333 0.00 0.00 0.00 3.18
4096 4399 9.698309 GCTATATAAGTTGCTCTGATAGTTGAA 57.302 33.333 0.00 0.00 0.00 2.69
4099 4402 9.979578 ATATAAGTTGCTCTGATAGTTGAAGAG 57.020 33.333 0.00 0.00 40.38 2.85
4100 4403 5.083533 AGTTGCTCTGATAGTTGAAGAGG 57.916 43.478 0.00 0.00 38.30 3.69
4101 4404 4.530161 AGTTGCTCTGATAGTTGAAGAGGT 59.470 41.667 0.00 0.00 38.30 3.85
4102 4405 5.717178 AGTTGCTCTGATAGTTGAAGAGGTA 59.283 40.000 0.00 0.00 38.30 3.08
4103 4406 6.382570 AGTTGCTCTGATAGTTGAAGAGGTAT 59.617 38.462 0.00 0.00 38.30 2.73
4104 4407 6.154203 TGCTCTGATAGTTGAAGAGGTATG 57.846 41.667 0.00 0.00 38.30 2.39
4105 4408 4.987912 GCTCTGATAGTTGAAGAGGTATGC 59.012 45.833 0.00 0.00 38.30 3.14
4106 4409 5.537188 CTCTGATAGTTGAAGAGGTATGCC 58.463 45.833 0.00 0.00 34.95 4.40
4107 4410 4.962362 TCTGATAGTTGAAGAGGTATGCCA 59.038 41.667 1.54 0.00 37.19 4.92
4108 4411 5.604231 TCTGATAGTTGAAGAGGTATGCCAT 59.396 40.000 1.54 0.00 37.19 4.40
4109 4412 5.614308 TGATAGTTGAAGAGGTATGCCATG 58.386 41.667 1.54 0.00 37.19 3.66
4110 4413 5.366477 TGATAGTTGAAGAGGTATGCCATGA 59.634 40.000 1.54 0.00 37.19 3.07
4111 4414 4.574674 AGTTGAAGAGGTATGCCATGAA 57.425 40.909 1.54 0.00 37.19 2.57
4112 4415 4.922206 AGTTGAAGAGGTATGCCATGAAA 58.078 39.130 1.54 0.00 37.19 2.69
4113 4416 5.513233 AGTTGAAGAGGTATGCCATGAAAT 58.487 37.500 1.54 0.00 37.19 2.17
4114 4417 6.662755 AGTTGAAGAGGTATGCCATGAAATA 58.337 36.000 1.54 0.00 37.19 1.40
4115 4418 7.118723 AGTTGAAGAGGTATGCCATGAAATAA 58.881 34.615 1.54 0.00 37.19 1.40
4116 4419 7.615365 AGTTGAAGAGGTATGCCATGAAATAAA 59.385 33.333 1.54 0.00 37.19 1.40
4117 4420 8.416329 GTTGAAGAGGTATGCCATGAAATAAAT 58.584 33.333 1.54 0.00 37.19 1.40
4118 4421 9.639563 TTGAAGAGGTATGCCATGAAATAAATA 57.360 29.630 1.54 0.00 37.19 1.40
4119 4422 9.812347 TGAAGAGGTATGCCATGAAATAAATAT 57.188 29.630 1.54 0.00 37.19 1.28
4129 4432 9.190858 TGCCATGAAATAAATATAACATTTCGC 57.809 29.630 0.00 8.58 40.13 4.70
4130 4433 9.410556 GCCATGAAATAAATATAACATTTCGCT 57.589 29.630 0.00 1.85 40.13 4.93
4140 4443 8.638685 AATATAACATTTCGCTACTTGTACGT 57.361 30.769 0.00 0.00 0.00 3.57
4141 4444 4.898328 AACATTTCGCTACTTGTACGTC 57.102 40.909 0.00 0.00 0.00 4.34
4142 4445 2.912967 ACATTTCGCTACTTGTACGTCG 59.087 45.455 0.00 0.00 0.00 5.12
4143 4446 1.330306 TTTCGCTACTTGTACGTCGC 58.670 50.000 0.00 0.00 0.00 5.19
4144 4447 0.454957 TTCGCTACTTGTACGTCGCC 60.455 55.000 0.00 0.00 0.00 5.54
4145 4448 1.136147 CGCTACTTGTACGTCGCCT 59.864 57.895 0.00 0.00 0.00 5.52
4146 4449 1.132199 CGCTACTTGTACGTCGCCTG 61.132 60.000 0.00 0.00 0.00 4.85
4147 4450 0.169672 GCTACTTGTACGTCGCCTGA 59.830 55.000 0.00 0.00 0.00 3.86
4148 4451 1.401931 GCTACTTGTACGTCGCCTGAA 60.402 52.381 0.00 0.00 0.00 3.02
4149 4452 2.734492 GCTACTTGTACGTCGCCTGAAT 60.734 50.000 0.00 0.00 0.00 2.57
4150 4453 2.450609 ACTTGTACGTCGCCTGAATT 57.549 45.000 0.00 0.00 0.00 2.17
4151 4454 2.762745 ACTTGTACGTCGCCTGAATTT 58.237 42.857 0.00 0.00 0.00 1.82
4152 4455 3.916761 ACTTGTACGTCGCCTGAATTTA 58.083 40.909 0.00 0.00 0.00 1.40
4153 4456 4.501071 ACTTGTACGTCGCCTGAATTTAT 58.499 39.130 0.00 0.00 0.00 1.40
4154 4457 5.653507 ACTTGTACGTCGCCTGAATTTATA 58.346 37.500 0.00 0.00 0.00 0.98
4155 4458 6.101332 ACTTGTACGTCGCCTGAATTTATAA 58.899 36.000 0.00 0.00 0.00 0.98
4156 4459 6.759827 ACTTGTACGTCGCCTGAATTTATAAT 59.240 34.615 0.00 0.00 0.00 1.28
4157 4460 7.279313 ACTTGTACGTCGCCTGAATTTATAATT 59.721 33.333 0.00 0.00 0.00 1.40
4158 4461 7.542534 TGTACGTCGCCTGAATTTATAATTT 57.457 32.000 0.00 0.00 0.00 1.82
4159 4462 7.403421 TGTACGTCGCCTGAATTTATAATTTG 58.597 34.615 0.00 0.00 0.00 2.32
4160 4463 5.816919 ACGTCGCCTGAATTTATAATTTGG 58.183 37.500 0.00 0.00 0.00 3.28
4161 4464 5.212194 CGTCGCCTGAATTTATAATTTGGG 58.788 41.667 0.00 2.20 0.00 4.12
4162 4465 4.982295 GTCGCCTGAATTTATAATTTGGGC 59.018 41.667 16.06 16.06 0.00 5.36
4163 4466 4.038642 TCGCCTGAATTTATAATTTGGGCC 59.961 41.667 18.16 0.00 34.27 5.80
4164 4467 4.202202 CGCCTGAATTTATAATTTGGGCCA 60.202 41.667 0.00 0.00 34.27 5.36
4165 4468 5.299949 GCCTGAATTTATAATTTGGGCCAG 58.700 41.667 6.23 9.25 0.00 4.85
4166 4469 5.163311 GCCTGAATTTATAATTTGGGCCAGT 60.163 40.000 6.23 0.00 0.00 4.00
4167 4470 6.515832 CCTGAATTTATAATTTGGGCCAGTC 58.484 40.000 6.23 0.00 0.00 3.51
4168 4471 6.098124 CCTGAATTTATAATTTGGGCCAGTCA 59.902 38.462 6.23 0.00 0.00 3.41
4169 4472 7.364585 CCTGAATTTATAATTTGGGCCAGTCAA 60.365 37.037 6.23 0.00 0.00 3.18
4170 4473 8.088463 TGAATTTATAATTTGGGCCAGTCAAT 57.912 30.769 6.23 0.33 0.00 2.57
4171 4474 8.547173 TGAATTTATAATTTGGGCCAGTCAATT 58.453 29.630 16.55 16.55 0.00 2.32
4172 4475 9.394767 GAATTTATAATTTGGGCCAGTCAATTT 57.605 29.630 17.32 5.41 0.00 1.82
4173 4476 9.752228 AATTTATAATTTGGGCCAGTCAATTTT 57.248 25.926 17.32 12.96 0.00 1.82
4174 4477 9.752228 ATTTATAATTTGGGCCAGTCAATTTTT 57.248 25.926 17.32 9.91 0.00 1.94
4175 4478 8.558973 TTATAATTTGGGCCAGTCAATTTTTG 57.441 30.769 17.32 0.00 0.00 2.44
4176 4479 2.926778 TTGGGCCAGTCAATTTTTGG 57.073 45.000 6.23 0.00 35.06 3.28
4177 4480 2.094100 TGGGCCAGTCAATTTTTGGA 57.906 45.000 0.00 0.00 33.76 3.53
4178 4481 2.618794 TGGGCCAGTCAATTTTTGGAT 58.381 42.857 0.00 0.00 33.76 3.41
4179 4482 2.302445 TGGGCCAGTCAATTTTTGGATG 59.698 45.455 0.00 0.00 33.76 3.51
4180 4483 2.566724 GGGCCAGTCAATTTTTGGATGA 59.433 45.455 4.39 0.00 33.76 2.92
4181 4484 3.007831 GGGCCAGTCAATTTTTGGATGAA 59.992 43.478 4.39 0.00 33.76 2.57
4182 4485 4.248058 GGCCAGTCAATTTTTGGATGAAG 58.752 43.478 0.00 0.00 33.76 3.02
4183 4486 4.021192 GGCCAGTCAATTTTTGGATGAAGA 60.021 41.667 0.00 0.00 33.76 2.87
4184 4487 5.511202 GGCCAGTCAATTTTTGGATGAAGAA 60.511 40.000 0.00 0.00 33.76 2.52
4185 4488 5.636543 GCCAGTCAATTTTTGGATGAAGAAG 59.363 40.000 4.26 0.00 33.76 2.85
4186 4489 5.636543 CCAGTCAATTTTTGGATGAAGAAGC 59.363 40.000 0.00 0.00 33.76 3.86
4187 4490 6.218019 CAGTCAATTTTTGGATGAAGAAGCA 58.782 36.000 0.00 0.00 0.00 3.91
4188 4491 6.145048 CAGTCAATTTTTGGATGAAGAAGCAC 59.855 38.462 0.00 0.00 0.00 4.40
4189 4492 5.406477 GTCAATTTTTGGATGAAGAAGCACC 59.594 40.000 0.00 0.00 0.00 5.01
4190 4493 4.541973 ATTTTTGGATGAAGAAGCACCC 57.458 40.909 0.00 0.00 0.00 4.61
4191 4494 1.533625 TTTGGATGAAGAAGCACCCG 58.466 50.000 0.00 0.00 0.00 5.28
4192 4495 0.960364 TTGGATGAAGAAGCACCCGC 60.960 55.000 0.00 0.00 38.99 6.13
4193 4496 2.115291 GGATGAAGAAGCACCCGCC 61.115 63.158 0.00 0.00 39.83 6.13
4194 4497 2.436646 ATGAAGAAGCACCCGCCG 60.437 61.111 0.00 0.00 39.83 6.46
4195 4498 3.254024 ATGAAGAAGCACCCGCCGT 62.254 57.895 0.00 0.00 39.83 5.68
4196 4499 3.119096 GAAGAAGCACCCGCCGTC 61.119 66.667 0.00 0.00 39.83 4.79
4208 4511 3.387947 GCCGTCGGAGGGAAGGAA 61.388 66.667 20.30 0.00 46.09 3.36
4209 4512 2.893398 CCGTCGGAGGGAAGGAAG 59.107 66.667 11.23 0.00 46.09 3.46
4210 4513 2.722201 CCGTCGGAGGGAAGGAAGG 61.722 68.421 11.23 0.00 46.09 3.46
4211 4514 1.681327 CGTCGGAGGGAAGGAAGGA 60.681 63.158 0.00 0.00 0.00 3.36
4212 4515 1.668101 CGTCGGAGGGAAGGAAGGAG 61.668 65.000 0.00 0.00 0.00 3.69
4213 4516 1.686110 TCGGAGGGAAGGAAGGAGC 60.686 63.158 0.00 0.00 0.00 4.70
4214 4517 1.990060 CGGAGGGAAGGAAGGAGCA 60.990 63.158 0.00 0.00 0.00 4.26
4215 4518 1.911471 GGAGGGAAGGAAGGAGCAG 59.089 63.158 0.00 0.00 0.00 4.24
4216 4519 1.223211 GAGGGAAGGAAGGAGCAGC 59.777 63.158 0.00 0.00 0.00 5.25
4217 4520 2.264120 GAGGGAAGGAAGGAGCAGCC 62.264 65.000 0.00 0.00 0.00 4.85
4218 4521 2.273776 GGAAGGAAGGAGCAGCCC 59.726 66.667 0.00 0.00 37.37 5.19
4219 4522 2.304831 GGAAGGAAGGAGCAGCCCT 61.305 63.158 0.00 0.00 38.42 5.19
4224 4527 3.721706 AAGGAGCAGCCCTTCGGG 61.722 66.667 8.88 0.00 42.62 5.14
4238 4541 3.100671 CCTTCGGGGATCTATCTTAGGG 58.899 54.545 0.00 0.00 37.23 3.53
4239 4542 3.502488 CCTTCGGGGATCTATCTTAGGGT 60.502 52.174 0.00 0.00 37.23 4.34
4240 4543 3.170991 TCGGGGATCTATCTTAGGGTG 57.829 52.381 0.00 0.00 0.00 4.61
4241 4544 2.180276 CGGGGATCTATCTTAGGGTGG 58.820 57.143 0.00 0.00 0.00 4.61
4242 4545 1.909986 GGGGATCTATCTTAGGGTGGC 59.090 57.143 0.00 0.00 0.00 5.01
4243 4546 2.621070 GGGATCTATCTTAGGGTGGCA 58.379 52.381 0.00 0.00 0.00 4.92
4244 4547 2.569404 GGGATCTATCTTAGGGTGGCAG 59.431 54.545 0.00 0.00 0.00 4.85
4245 4548 2.569404 GGATCTATCTTAGGGTGGCAGG 59.431 54.545 0.00 0.00 0.00 4.85
4246 4549 1.424638 TCTATCTTAGGGTGGCAGGC 58.575 55.000 0.00 0.00 0.00 4.85
4247 4550 0.398318 CTATCTTAGGGTGGCAGGCC 59.602 60.000 2.62 2.62 0.00 5.19
4248 4551 1.060163 TATCTTAGGGTGGCAGGCCC 61.060 60.000 8.02 5.02 46.43 5.80
4259 4562 3.402681 CAGGCCCACCGGTGATCT 61.403 66.667 36.07 24.12 42.76 2.75
4260 4563 2.063979 CAGGCCCACCGGTGATCTA 61.064 63.158 36.07 0.00 42.76 1.98
4261 4564 1.074471 AGGCCCACCGGTGATCTAT 60.074 57.895 36.07 14.34 42.76 1.98
4262 4565 1.122019 AGGCCCACCGGTGATCTATC 61.122 60.000 36.07 17.24 42.76 2.08
4263 4566 1.122019 GGCCCACCGGTGATCTATCT 61.122 60.000 36.07 0.00 0.00 1.98
4264 4567 0.759346 GCCCACCGGTGATCTATCTT 59.241 55.000 36.07 0.00 0.00 2.40
4265 4568 1.968493 GCCCACCGGTGATCTATCTTA 59.032 52.381 36.07 0.00 0.00 2.10
4266 4569 2.367567 GCCCACCGGTGATCTATCTTAA 59.632 50.000 36.07 0.00 0.00 1.85
4267 4570 3.555168 GCCCACCGGTGATCTATCTTAAG 60.555 52.174 36.07 13.77 0.00 1.85
4268 4571 3.006967 CCCACCGGTGATCTATCTTAAGG 59.993 52.174 36.07 18.91 0.00 2.69
4269 4572 3.641906 CCACCGGTGATCTATCTTAAGGT 59.358 47.826 36.07 0.00 0.00 3.50
4270 4573 4.501571 CCACCGGTGATCTATCTTAAGGTG 60.502 50.000 36.07 9.05 44.29 4.00
4271 4574 3.641906 ACCGGTGATCTATCTTAAGGTGG 59.358 47.826 6.12 0.00 0.00 4.61
4272 4575 3.555168 CCGGTGATCTATCTTAAGGTGGC 60.555 52.174 1.85 0.00 0.00 5.01
4273 4576 3.069586 CGGTGATCTATCTTAAGGTGGCA 59.930 47.826 1.85 0.00 0.00 4.92
4274 4577 4.636249 GGTGATCTATCTTAAGGTGGCAG 58.364 47.826 1.85 0.00 0.00 4.85
4275 4578 4.503991 GGTGATCTATCTTAAGGTGGCAGG 60.504 50.000 1.85 0.00 0.00 4.85
4276 4579 4.101741 GTGATCTATCTTAAGGTGGCAGGT 59.898 45.833 1.85 0.00 0.00 4.00
4277 4580 4.721776 TGATCTATCTTAAGGTGGCAGGTT 59.278 41.667 1.85 0.00 0.00 3.50
4278 4581 4.755266 TCTATCTTAAGGTGGCAGGTTC 57.245 45.455 1.85 0.00 0.00 3.62
4279 4582 2.403252 ATCTTAAGGTGGCAGGTTCG 57.597 50.000 1.85 0.00 0.00 3.95
4280 4583 1.053424 TCTTAAGGTGGCAGGTTCGT 58.947 50.000 1.85 0.00 0.00 3.85
4281 4584 1.001633 TCTTAAGGTGGCAGGTTCGTC 59.998 52.381 1.85 0.00 0.00 4.20
4282 4585 0.320073 TTAAGGTGGCAGGTTCGTCG 60.320 55.000 0.00 0.00 0.00 5.12
4283 4586 1.180456 TAAGGTGGCAGGTTCGTCGA 61.180 55.000 0.00 0.00 0.00 4.20
4284 4587 2.710724 AAGGTGGCAGGTTCGTCGAC 62.711 60.000 5.18 5.18 0.00 4.20
4285 4588 3.103911 GTGGCAGGTTCGTCGACG 61.104 66.667 31.30 31.30 41.45 5.12
4298 4601 2.222678 TCGTCGACGATCTATGTAAGGC 59.777 50.000 34.97 0.00 44.22 4.35
4299 4602 2.572243 GTCGACGATCTATGTAAGGCG 58.428 52.381 0.00 0.00 0.00 5.52
4300 4603 2.032204 GTCGACGATCTATGTAAGGCGT 60.032 50.000 0.00 0.00 38.65 5.68
4301 4604 2.032290 TCGACGATCTATGTAAGGCGTG 60.032 50.000 0.00 0.00 36.97 5.34
4302 4605 2.286831 CGACGATCTATGTAAGGCGTGT 60.287 50.000 0.00 0.00 36.97 4.49
4303 4606 3.703420 GACGATCTATGTAAGGCGTGTT 58.297 45.455 0.00 0.00 36.97 3.32
4304 4607 3.444916 ACGATCTATGTAAGGCGTGTTG 58.555 45.455 0.00 0.00 36.01 3.33
4305 4608 3.129813 ACGATCTATGTAAGGCGTGTTGA 59.870 43.478 0.00 0.00 36.01 3.18
4306 4609 3.731216 CGATCTATGTAAGGCGTGTTGAG 59.269 47.826 0.00 0.00 0.00 3.02
4307 4610 3.520290 TCTATGTAAGGCGTGTTGAGG 57.480 47.619 0.00 0.00 0.00 3.86
4308 4611 2.167693 TCTATGTAAGGCGTGTTGAGGG 59.832 50.000 0.00 0.00 0.00 4.30
4309 4612 0.676782 ATGTAAGGCGTGTTGAGGGC 60.677 55.000 0.00 0.00 0.00 5.19
4324 4627 4.067913 GGCCGGGGTGCATGTTTG 62.068 66.667 2.18 0.00 0.00 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 6.202954 TGAAAGTTCAGATTTTTCTCCGTCTC 59.797 38.462 8.04 0.00 33.21 3.36
44 45 6.055588 TGAAAGTTCAGATTTTTCTCCGTCT 58.944 36.000 8.04 0.00 33.21 4.18
59 60 8.196771 ACTTACAATTTTGCATCTGAAAGTTCA 58.803 29.630 0.00 0.00 35.57 3.18
63 64 9.033481 TGAAACTTACAATTTTGCATCTGAAAG 57.967 29.630 0.00 0.00 0.00 2.62
69 70 7.388290 TCGTTGAAACTTACAATTTTGCATC 57.612 32.000 0.00 0.00 0.00 3.91
118 119 1.414181 AGTAGTTGGATCCCGCATGAG 59.586 52.381 9.90 0.00 0.00 2.90
119 120 1.496060 AGTAGTTGGATCCCGCATGA 58.504 50.000 9.90 0.00 0.00 3.07
120 121 2.213499 GAAGTAGTTGGATCCCGCATG 58.787 52.381 9.90 0.00 0.00 4.06
124 125 1.475280 TCACGAAGTAGTTGGATCCCG 59.525 52.381 9.90 5.22 41.61 5.14
156 157 4.767255 CCTGCCCAGCCACTCGAC 62.767 72.222 0.00 0.00 0.00 4.20
192 193 1.939934 CTAATGCTCGGGAATTCGCAA 59.060 47.619 20.97 3.04 35.83 4.85
258 263 3.004315 GGGCATGGTGATGTATAAAACGG 59.996 47.826 0.00 0.00 31.50 4.44
275 281 4.527816 TGTTGAAGCTAGATTTTTGGGCAT 59.472 37.500 0.00 0.00 0.00 4.40
373 380 1.683011 GGGCAACTGGCTACATGATGT 60.683 52.381 2.65 2.65 44.01 3.06
408 415 2.021457 GCGCAGTACATGGGGTTTTAT 58.979 47.619 0.30 0.00 42.01 1.40
488 521 1.752694 GGCCAAATCTAAGCCGGCA 60.753 57.895 31.54 8.23 44.82 5.69
535 577 1.330655 GCTCCGATGGGTGAAGAGGA 61.331 60.000 0.00 0.00 33.83 3.71
572 614 1.450312 GGATTCAGTGGTGGCTCCG 60.450 63.158 0.53 0.00 39.52 4.63
611 661 1.768684 TTCTGTGGCGAAAGGGCTCT 61.769 55.000 0.00 0.00 42.84 4.09
698 755 1.757306 CTGTGGAAGCTGGTGGAGT 59.243 57.895 0.00 0.00 0.00 3.85
880 937 3.039011 ACTCCACATCGGCCTAGTTATT 58.961 45.455 0.00 0.00 33.14 1.40
882 939 2.154567 ACTCCACATCGGCCTAGTTA 57.845 50.000 0.00 0.00 33.14 2.24
923 980 1.535896 TCTTCTCCTTGACAGTCGTCG 59.464 52.381 0.00 0.00 45.80 5.12
930 987 5.470368 CGTGTCTAATTCTTCTCCTTGACA 58.530 41.667 0.00 0.00 0.00 3.58
955 1012 1.529865 GTCACACTAACCAAGAACGGC 59.470 52.381 0.00 0.00 0.00 5.68
1063 1120 0.181587 TCCTTGTTCGCCTTGTTCCA 59.818 50.000 0.00 0.00 0.00 3.53
1128 1210 4.332828 TCTTCACCGAGTCTGAACTATCA 58.667 43.478 0.00 0.00 35.28 2.15
1137 1219 2.494073 GTCCTCATTCTTCACCGAGTCT 59.506 50.000 0.00 0.00 0.00 3.24
1217 1299 9.634163 ACTTCAACTACGAAACAAAAAGAAAAT 57.366 25.926 0.00 0.00 0.00 1.82
1222 1304 9.931210 AAGATACTTCAACTACGAAACAAAAAG 57.069 29.630 0.00 0.00 0.00 2.27
1280 1363 7.504238 TGGTCTTGATACAAACTAAAACATGGT 59.496 33.333 0.00 0.00 0.00 3.55
1348 1488 1.632422 GGCATCATTTTGCTCCAACG 58.368 50.000 0.00 0.00 42.38 4.10
1453 1594 2.306219 TCCACCGGGTGATGTATTTTGA 59.694 45.455 28.36 10.52 35.23 2.69
1528 1669 6.725834 ACCATGATTTTTACCAGGTCATCTTT 59.274 34.615 0.00 0.00 0.00 2.52
1712 1853 8.700051 TCTGATTTTATTTCAACCAAAAGACCA 58.300 29.630 0.00 0.00 0.00 4.02
1723 1864 9.519191 TCCACTGAATCTCTGATTTTATTTCAA 57.481 29.630 0.00 0.00 0.00 2.69
1894 2037 1.000607 TCTAATAGCATGCGTCCGGAC 60.001 52.381 25.28 25.28 0.00 4.79
1895 2038 1.269723 CTCTAATAGCATGCGTCCGGA 59.730 52.381 13.01 0.00 0.00 5.14
2211 2399 3.695606 GACAGGAGCAGGGCACGA 61.696 66.667 0.00 0.00 0.00 4.35
2515 2718 1.165907 TCGGCAAACTTGAGCACCAG 61.166 55.000 0.00 0.00 0.00 4.00
2571 2777 4.072088 GACGCCGCGGTGTTGAAG 62.072 66.667 41.50 19.07 39.13 3.02
2871 3092 1.381872 GAGGAGAGCAGGGCTGGTA 60.382 63.158 0.00 0.00 39.88 3.25
2943 3173 3.231736 AACACGTCCCGCTGAGGT 61.232 61.111 0.00 0.00 42.62 3.85
3451 3740 3.053470 TGATGATCCAACACCATGTCCAT 60.053 43.478 0.00 0.00 0.00 3.41
3478 3773 7.825709 TGGTGATGGGGAGAGAAATAATAATT 58.174 34.615 0.00 0.00 0.00 1.40
3538 3833 2.945008 TGATCATTGCTTTCGGATCCAC 59.055 45.455 13.41 0.00 36.24 4.02
3660 3955 4.803613 CAGTTTTTCCACTTTGGCTGTAAC 59.196 41.667 0.00 0.00 37.47 2.50
3692 3987 5.278660 CCATGTTTATCTGGGCTTATGCTTC 60.279 44.000 0.13 0.00 39.59 3.86
3706 4001 6.536224 CCTTTCCTTTTGATGCCATGTTTATC 59.464 38.462 0.00 0.00 0.00 1.75
3729 4024 7.961326 AAATTATCAGGCAGTACAAAATCCT 57.039 32.000 0.00 0.00 0.00 3.24
3803 4098 9.240159 GAGAAAAGTCCTTCGAGAAATATCTAC 57.760 37.037 0.00 0.00 35.54 2.59
3854 4157 8.852135 ACTTAACCGAATCCAACATTCTAAAAA 58.148 29.630 0.00 0.00 0.00 1.94
3873 4176 5.929415 GGCTGCTGAATAGATAGACTTAACC 59.071 44.000 0.00 0.00 0.00 2.85
3981 4284 8.517062 ACTAGCTGAAAATAAGATGAAGCAAT 57.483 30.769 0.00 0.00 0.00 3.56
3984 4287 9.875675 CATAACTAGCTGAAAATAAGATGAAGC 57.124 33.333 0.00 0.00 0.00 3.86
3997 4300 9.502091 ACAAGAATGTAAACATAACTAGCTGAA 57.498 29.630 0.00 0.00 38.24 3.02
4027 4330 6.701841 CTTACACAAGAGCTCAGTTAAACTGA 59.298 38.462 17.77 0.00 42.32 3.41
4028 4331 6.480320 ACTTACACAAGAGCTCAGTTAAACTG 59.520 38.462 17.77 0.00 40.12 3.16
4029 4332 6.480320 CACTTACACAAGAGCTCAGTTAAACT 59.520 38.462 17.77 0.00 35.60 2.66
4030 4333 6.258068 ACACTTACACAAGAGCTCAGTTAAAC 59.742 38.462 17.77 0.00 35.60 2.01
4031 4334 6.346096 ACACTTACACAAGAGCTCAGTTAAA 58.654 36.000 17.77 9.16 35.60 1.52
4032 4335 5.914033 ACACTTACACAAGAGCTCAGTTAA 58.086 37.500 17.77 12.80 35.60 2.01
4033 4336 5.531122 ACACTTACACAAGAGCTCAGTTA 57.469 39.130 17.77 6.78 35.60 2.24
4034 4337 4.408182 ACACTTACACAAGAGCTCAGTT 57.592 40.909 17.77 0.00 35.60 3.16
4035 4338 5.290386 GTTACACTTACACAAGAGCTCAGT 58.710 41.667 17.77 11.33 35.60 3.41
4036 4339 4.686554 GGTTACACTTACACAAGAGCTCAG 59.313 45.833 17.77 10.62 35.60 3.35
4037 4340 4.502604 GGGTTACACTTACACAAGAGCTCA 60.503 45.833 17.77 0.00 35.60 4.26
4038 4341 3.995048 GGGTTACACTTACACAAGAGCTC 59.005 47.826 5.27 5.27 35.60 4.09
4039 4342 3.554337 CGGGTTACACTTACACAAGAGCT 60.554 47.826 0.00 0.00 35.60 4.09
4040 4343 2.735134 CGGGTTACACTTACACAAGAGC 59.265 50.000 0.00 0.00 35.60 4.09
4041 4344 4.022589 TCTCGGGTTACACTTACACAAGAG 60.023 45.833 0.00 0.00 35.60 2.85
4042 4345 3.890756 TCTCGGGTTACACTTACACAAGA 59.109 43.478 0.00 0.00 35.60 3.02
4043 4346 3.985925 GTCTCGGGTTACACTTACACAAG 59.014 47.826 0.00 0.00 37.81 3.16
4044 4347 3.384146 TGTCTCGGGTTACACTTACACAA 59.616 43.478 0.00 0.00 0.00 3.33
4045 4348 2.957680 TGTCTCGGGTTACACTTACACA 59.042 45.455 0.00 0.00 0.00 3.72
4046 4349 3.648339 TGTCTCGGGTTACACTTACAC 57.352 47.619 0.00 0.00 0.00 2.90
4047 4350 3.638160 AGTTGTCTCGGGTTACACTTACA 59.362 43.478 0.00 0.00 0.00 2.41
4048 4351 3.985925 CAGTTGTCTCGGGTTACACTTAC 59.014 47.826 0.00 0.00 0.00 2.34
4049 4352 3.553508 GCAGTTGTCTCGGGTTACACTTA 60.554 47.826 0.00 0.00 0.00 2.24
4050 4353 2.805657 GCAGTTGTCTCGGGTTACACTT 60.806 50.000 0.00 0.00 0.00 3.16
4051 4354 1.270147 GCAGTTGTCTCGGGTTACACT 60.270 52.381 0.00 0.00 0.00 3.55
4052 4355 1.145803 GCAGTTGTCTCGGGTTACAC 58.854 55.000 0.00 0.00 0.00 2.90
4053 4356 1.045407 AGCAGTTGTCTCGGGTTACA 58.955 50.000 0.00 0.00 0.00 2.41
4054 4357 3.521947 ATAGCAGTTGTCTCGGGTTAC 57.478 47.619 0.00 0.00 0.00 2.50
4055 4358 6.548622 ACTTATATAGCAGTTGTCTCGGGTTA 59.451 38.462 0.00 0.00 0.00 2.85
4056 4359 5.363005 ACTTATATAGCAGTTGTCTCGGGTT 59.637 40.000 0.00 0.00 0.00 4.11
4057 4360 4.894114 ACTTATATAGCAGTTGTCTCGGGT 59.106 41.667 0.00 0.00 0.00 5.28
4058 4361 5.455056 ACTTATATAGCAGTTGTCTCGGG 57.545 43.478 0.00 0.00 0.00 5.14
4059 4362 6.755461 CAACTTATATAGCAGTTGTCTCGG 57.245 41.667 15.05 0.00 43.33 4.63
4066 4369 8.865090 ACTATCAGAGCAACTTATATAGCAGTT 58.135 33.333 0.00 0.00 33.29 3.16
4067 4370 8.415950 ACTATCAGAGCAACTTATATAGCAGT 57.584 34.615 0.00 0.00 0.00 4.40
4068 4371 9.138062 CAACTATCAGAGCAACTTATATAGCAG 57.862 37.037 0.00 0.00 0.00 4.24
4069 4372 8.860088 TCAACTATCAGAGCAACTTATATAGCA 58.140 33.333 0.00 0.00 0.00 3.49
4070 4373 9.698309 TTCAACTATCAGAGCAACTTATATAGC 57.302 33.333 0.00 0.00 0.00 2.97
4073 4376 9.979578 CTCTTCAACTATCAGAGCAACTTATAT 57.020 33.333 0.00 0.00 0.00 0.86
4074 4377 8.417106 CCTCTTCAACTATCAGAGCAACTTATA 58.583 37.037 0.00 0.00 33.89 0.98
4075 4378 7.093112 ACCTCTTCAACTATCAGAGCAACTTAT 60.093 37.037 0.00 0.00 33.89 1.73
4076 4379 6.211584 ACCTCTTCAACTATCAGAGCAACTTA 59.788 38.462 0.00 0.00 33.89 2.24
4077 4380 5.012561 ACCTCTTCAACTATCAGAGCAACTT 59.987 40.000 0.00 0.00 33.89 2.66
4078 4381 4.530161 ACCTCTTCAACTATCAGAGCAACT 59.470 41.667 0.00 0.00 33.89 3.16
4079 4382 4.826556 ACCTCTTCAACTATCAGAGCAAC 58.173 43.478 0.00 0.00 33.89 4.17
4080 4383 6.577103 CATACCTCTTCAACTATCAGAGCAA 58.423 40.000 0.00 0.00 33.89 3.91
4081 4384 5.452496 GCATACCTCTTCAACTATCAGAGCA 60.452 44.000 0.00 0.00 33.89 4.26
4082 4385 4.987912 GCATACCTCTTCAACTATCAGAGC 59.012 45.833 0.00 0.00 33.89 4.09
4083 4386 5.069648 TGGCATACCTCTTCAACTATCAGAG 59.930 44.000 0.00 0.00 36.63 3.35
4084 4387 4.962362 TGGCATACCTCTTCAACTATCAGA 59.038 41.667 0.00 0.00 36.63 3.27
4085 4388 5.282055 TGGCATACCTCTTCAACTATCAG 57.718 43.478 0.00 0.00 36.63 2.90
4086 4389 5.366477 TCATGGCATACCTCTTCAACTATCA 59.634 40.000 0.00 0.00 36.63 2.15
4087 4390 5.858381 TCATGGCATACCTCTTCAACTATC 58.142 41.667 0.00 0.00 36.63 2.08
4088 4391 5.894298 TCATGGCATACCTCTTCAACTAT 57.106 39.130 0.00 0.00 36.63 2.12
4089 4392 5.692115 TTCATGGCATACCTCTTCAACTA 57.308 39.130 0.00 0.00 36.63 2.24
4090 4393 4.574674 TTCATGGCATACCTCTTCAACT 57.425 40.909 0.00 0.00 36.63 3.16
4091 4394 5.841957 ATTTCATGGCATACCTCTTCAAC 57.158 39.130 0.00 0.00 36.63 3.18
4092 4395 7.953005 TTTATTTCATGGCATACCTCTTCAA 57.047 32.000 0.00 0.00 36.63 2.69
4093 4396 9.812347 ATATTTATTTCATGGCATACCTCTTCA 57.188 29.630 0.00 0.00 36.63 3.02
4103 4406 9.190858 GCGAAATGTTATATTTATTTCATGGCA 57.809 29.630 14.22 0.00 39.55 4.92
4104 4407 9.410556 AGCGAAATGTTATATTTATTTCATGGC 57.589 29.630 14.22 10.99 39.55 4.40
4114 4417 9.090692 ACGTACAAGTAGCGAAATGTTATATTT 57.909 29.630 0.00 0.00 0.00 1.40
4115 4418 8.638685 ACGTACAAGTAGCGAAATGTTATATT 57.361 30.769 0.00 0.00 0.00 1.28
4116 4419 7.112565 CGACGTACAAGTAGCGAAATGTTATAT 59.887 37.037 0.00 0.00 0.00 0.86
4117 4420 6.411782 CGACGTACAAGTAGCGAAATGTTATA 59.588 38.462 0.00 0.00 0.00 0.98
4118 4421 5.228635 CGACGTACAAGTAGCGAAATGTTAT 59.771 40.000 0.00 0.00 0.00 1.89
4119 4422 4.554586 CGACGTACAAGTAGCGAAATGTTA 59.445 41.667 0.00 0.00 0.00 2.41
4120 4423 3.362831 CGACGTACAAGTAGCGAAATGTT 59.637 43.478 0.00 0.00 0.00 2.71
4121 4424 2.912967 CGACGTACAAGTAGCGAAATGT 59.087 45.455 0.00 0.00 0.00 2.71
4122 4425 2.284288 GCGACGTACAAGTAGCGAAATG 60.284 50.000 0.00 0.00 33.47 2.32
4123 4426 1.916000 GCGACGTACAAGTAGCGAAAT 59.084 47.619 0.00 0.00 33.47 2.17
4124 4427 1.330306 GCGACGTACAAGTAGCGAAA 58.670 50.000 0.00 0.00 33.47 3.46
4125 4428 0.454957 GGCGACGTACAAGTAGCGAA 60.455 55.000 0.00 0.00 42.42 4.70
4126 4429 1.135315 GGCGACGTACAAGTAGCGA 59.865 57.895 0.00 0.00 42.42 4.93
4127 4430 1.132199 CAGGCGACGTACAAGTAGCG 61.132 60.000 0.00 0.00 42.42 4.26
4128 4431 0.169672 TCAGGCGACGTACAAGTAGC 59.830 55.000 0.00 0.00 41.10 3.58
4129 4432 2.624316 TTCAGGCGACGTACAAGTAG 57.376 50.000 0.00 0.00 0.00 2.57
4130 4433 3.581024 AATTCAGGCGACGTACAAGTA 57.419 42.857 0.00 0.00 0.00 2.24
4131 4434 2.450609 AATTCAGGCGACGTACAAGT 57.549 45.000 0.00 0.00 0.00 3.16
4132 4435 6.578020 TTATAAATTCAGGCGACGTACAAG 57.422 37.500 0.00 0.00 0.00 3.16
4133 4436 7.542534 AATTATAAATTCAGGCGACGTACAA 57.457 32.000 0.00 0.00 0.00 2.41
4134 4437 7.403421 CAAATTATAAATTCAGGCGACGTACA 58.597 34.615 0.00 0.00 0.00 2.90
4135 4438 6.849305 CCAAATTATAAATTCAGGCGACGTAC 59.151 38.462 0.00 0.00 0.00 3.67
4136 4439 6.017770 CCCAAATTATAAATTCAGGCGACGTA 60.018 38.462 0.00 0.00 0.00 3.57
4137 4440 5.220970 CCCAAATTATAAATTCAGGCGACGT 60.221 40.000 0.00 0.00 0.00 4.34
4138 4441 5.212194 CCCAAATTATAAATTCAGGCGACG 58.788 41.667 0.00 0.00 0.00 5.12
4139 4442 4.982295 GCCCAAATTATAAATTCAGGCGAC 59.018 41.667 7.69 0.00 0.00 5.19
4140 4443 4.038642 GGCCCAAATTATAAATTCAGGCGA 59.961 41.667 13.81 0.00 38.78 5.54
4141 4444 4.202202 TGGCCCAAATTATAAATTCAGGCG 60.202 41.667 13.81 0.00 38.78 5.52
4142 4445 5.163311 ACTGGCCCAAATTATAAATTCAGGC 60.163 40.000 12.56 12.56 37.14 4.85
4143 4446 6.098124 TGACTGGCCCAAATTATAAATTCAGG 59.902 38.462 0.00 0.00 0.00 3.86
4144 4447 7.111247 TGACTGGCCCAAATTATAAATTCAG 57.889 36.000 0.00 0.00 0.00 3.02
4145 4448 7.487822 TTGACTGGCCCAAATTATAAATTCA 57.512 32.000 0.00 0.00 0.00 2.57
4146 4449 8.962884 AATTGACTGGCCCAAATTATAAATTC 57.037 30.769 0.00 0.00 0.00 2.17
4147 4450 9.752228 AAAATTGACTGGCCCAAATTATAAATT 57.248 25.926 0.00 0.00 0.00 1.82
4148 4451 9.752228 AAAAATTGACTGGCCCAAATTATAAAT 57.248 25.926 0.00 0.00 0.00 1.40
4149 4452 9.007901 CAAAAATTGACTGGCCCAAATTATAAA 57.992 29.630 0.00 0.00 0.00 1.40
4150 4453 7.609532 CCAAAAATTGACTGGCCCAAATTATAA 59.390 33.333 0.00 0.00 0.00 0.98
4151 4454 7.038017 TCCAAAAATTGACTGGCCCAAATTATA 60.038 33.333 0.00 0.00 0.00 0.98
4152 4455 5.945191 CCAAAAATTGACTGGCCCAAATTAT 59.055 36.000 0.00 0.00 0.00 1.28
4153 4456 5.072329 TCCAAAAATTGACTGGCCCAAATTA 59.928 36.000 0.00 0.00 0.00 1.40
4154 4457 4.141298 TCCAAAAATTGACTGGCCCAAATT 60.141 37.500 0.00 0.00 0.00 1.82
4155 4458 3.393941 TCCAAAAATTGACTGGCCCAAAT 59.606 39.130 0.00 0.00 0.00 2.32
4156 4459 2.774234 TCCAAAAATTGACTGGCCCAAA 59.226 40.909 0.00 0.00 0.00 3.28
4157 4460 2.402564 TCCAAAAATTGACTGGCCCAA 58.597 42.857 0.00 0.00 0.00 4.12
4158 4461 2.094100 TCCAAAAATTGACTGGCCCA 57.906 45.000 0.00 0.00 0.00 5.36
4159 4462 2.566724 TCATCCAAAAATTGACTGGCCC 59.433 45.455 0.00 0.00 0.00 5.80
4160 4463 3.959535 TCATCCAAAAATTGACTGGCC 57.040 42.857 0.00 0.00 0.00 5.36
4161 4464 5.138125 TCTTCATCCAAAAATTGACTGGC 57.862 39.130 0.00 0.00 0.00 4.85
4162 4465 5.636543 GCTTCTTCATCCAAAAATTGACTGG 59.363 40.000 0.00 0.00 0.00 4.00
4163 4466 6.145048 GTGCTTCTTCATCCAAAAATTGACTG 59.855 38.462 0.00 0.00 0.00 3.51
4164 4467 6.218746 GTGCTTCTTCATCCAAAAATTGACT 58.781 36.000 0.00 0.00 0.00 3.41
4165 4468 5.406477 GGTGCTTCTTCATCCAAAAATTGAC 59.594 40.000 0.00 0.00 0.00 3.18
4166 4469 5.511202 GGGTGCTTCTTCATCCAAAAATTGA 60.511 40.000 0.00 0.00 37.20 2.57
4167 4470 4.692155 GGGTGCTTCTTCATCCAAAAATTG 59.308 41.667 0.00 0.00 37.20 2.32
4168 4471 4.561326 CGGGTGCTTCTTCATCCAAAAATT 60.561 41.667 0.00 0.00 37.06 1.82
4169 4472 3.056607 CGGGTGCTTCTTCATCCAAAAAT 60.057 43.478 0.00 0.00 37.06 1.82
4170 4473 2.295909 CGGGTGCTTCTTCATCCAAAAA 59.704 45.455 0.00 0.00 37.06 1.94
4171 4474 1.885887 CGGGTGCTTCTTCATCCAAAA 59.114 47.619 0.00 0.00 37.06 2.44
4172 4475 1.533625 CGGGTGCTTCTTCATCCAAA 58.466 50.000 0.00 0.00 37.06 3.28
4173 4476 0.960364 GCGGGTGCTTCTTCATCCAA 60.960 55.000 0.00 0.00 37.06 3.53
4174 4477 1.377202 GCGGGTGCTTCTTCATCCA 60.377 57.895 0.00 0.00 37.06 3.41
4175 4478 2.115291 GGCGGGTGCTTCTTCATCC 61.115 63.158 0.00 0.00 42.25 3.51
4176 4479 2.464459 CGGCGGGTGCTTCTTCATC 61.464 63.158 0.00 0.00 42.25 2.92
4177 4480 2.436646 CGGCGGGTGCTTCTTCAT 60.437 61.111 0.00 0.00 42.25 2.57
4178 4481 3.876589 GACGGCGGGTGCTTCTTCA 62.877 63.158 13.24 0.00 42.25 3.02
4179 4482 3.119096 GACGGCGGGTGCTTCTTC 61.119 66.667 13.24 0.00 42.25 2.87
4191 4494 3.372554 CTTCCTTCCCTCCGACGGC 62.373 68.421 9.66 0.00 29.74 5.68
4192 4495 2.722201 CCTTCCTTCCCTCCGACGG 61.722 68.421 7.84 7.84 0.00 4.79
4193 4496 1.668101 CTCCTTCCTTCCCTCCGACG 61.668 65.000 0.00 0.00 0.00 5.12
4194 4497 1.962321 GCTCCTTCCTTCCCTCCGAC 61.962 65.000 0.00 0.00 0.00 4.79
4195 4498 1.686110 GCTCCTTCCTTCCCTCCGA 60.686 63.158 0.00 0.00 0.00 4.55
4196 4499 1.965754 CTGCTCCTTCCTTCCCTCCG 61.966 65.000 0.00 0.00 0.00 4.63
4197 4500 1.911471 CTGCTCCTTCCTTCCCTCC 59.089 63.158 0.00 0.00 0.00 4.30
4198 4501 1.223211 GCTGCTCCTTCCTTCCCTC 59.777 63.158 0.00 0.00 0.00 4.30
4199 4502 2.304831 GGCTGCTCCTTCCTTCCCT 61.305 63.158 0.00 0.00 0.00 4.20
4200 4503 2.273776 GGCTGCTCCTTCCTTCCC 59.726 66.667 0.00 0.00 0.00 3.97
4201 4504 1.857638 AAGGGCTGCTCCTTCCTTCC 61.858 60.000 14.27 0.00 43.13 3.46
4202 4505 1.688211 AAGGGCTGCTCCTTCCTTC 59.312 57.895 14.27 0.00 43.13 3.46
4203 4506 3.928584 AAGGGCTGCTCCTTCCTT 58.071 55.556 14.27 8.55 43.13 3.36
4218 4521 3.511934 CACCCTAAGATAGATCCCCGAAG 59.488 52.174 0.00 0.00 0.00 3.79
4219 4522 3.507411 CACCCTAAGATAGATCCCCGAA 58.493 50.000 0.00 0.00 0.00 4.30
4220 4523 2.225293 CCACCCTAAGATAGATCCCCGA 60.225 54.545 0.00 0.00 0.00 5.14
4221 4524 2.180276 CCACCCTAAGATAGATCCCCG 58.820 57.143 0.00 0.00 0.00 5.73
4222 4525 1.909986 GCCACCCTAAGATAGATCCCC 59.090 57.143 0.00 0.00 0.00 4.81
4223 4526 2.569404 CTGCCACCCTAAGATAGATCCC 59.431 54.545 0.00 0.00 0.00 3.85
4224 4527 2.569404 CCTGCCACCCTAAGATAGATCC 59.431 54.545 0.00 0.00 0.00 3.36
4225 4528 2.027653 GCCTGCCACCCTAAGATAGATC 60.028 54.545 0.00 0.00 0.00 2.75
4226 4529 1.981495 GCCTGCCACCCTAAGATAGAT 59.019 52.381 0.00 0.00 0.00 1.98
4227 4530 1.424638 GCCTGCCACCCTAAGATAGA 58.575 55.000 0.00 0.00 0.00 1.98
4228 4531 0.398318 GGCCTGCCACCCTAAGATAG 59.602 60.000 2.58 0.00 35.81 2.08
4229 4532 1.060163 GGGCCTGCCACCCTAAGATA 61.060 60.000 10.86 0.00 44.68 1.98
4230 4533 2.386935 GGGCCTGCCACCCTAAGAT 61.387 63.158 10.86 0.00 44.68 2.40
4231 4534 3.015145 GGGCCTGCCACCCTAAGA 61.015 66.667 10.86 0.00 44.68 2.10
4242 4545 1.410850 ATAGATCACCGGTGGGCCTG 61.411 60.000 33.40 8.05 36.48 4.85
4243 4546 1.074471 ATAGATCACCGGTGGGCCT 60.074 57.895 33.40 26.38 36.48 5.19
4244 4547 1.122019 AGATAGATCACCGGTGGGCC 61.122 60.000 33.40 21.45 36.48 5.80
4245 4548 0.759346 AAGATAGATCACCGGTGGGC 59.241 55.000 33.40 24.21 36.48 5.36
4246 4549 3.006967 CCTTAAGATAGATCACCGGTGGG 59.993 52.174 33.40 18.00 40.11 4.61
4247 4550 3.641906 ACCTTAAGATAGATCACCGGTGG 59.358 47.826 33.40 15.51 0.00 4.61
4248 4551 4.501571 CCACCTTAAGATAGATCACCGGTG 60.502 50.000 29.26 29.26 39.17 4.94
4249 4552 3.641906 CCACCTTAAGATAGATCACCGGT 59.358 47.826 0.00 0.00 0.00 5.28
4250 4553 3.555168 GCCACCTTAAGATAGATCACCGG 60.555 52.174 3.36 0.00 0.00 5.28
4251 4554 3.069586 TGCCACCTTAAGATAGATCACCG 59.930 47.826 3.36 0.00 0.00 4.94
4252 4555 4.503991 CCTGCCACCTTAAGATAGATCACC 60.504 50.000 3.36 0.00 0.00 4.02
4253 4556 4.101741 ACCTGCCACCTTAAGATAGATCAC 59.898 45.833 3.36 0.00 0.00 3.06
4254 4557 4.298626 ACCTGCCACCTTAAGATAGATCA 58.701 43.478 3.36 0.00 0.00 2.92
4255 4558 4.965200 ACCTGCCACCTTAAGATAGATC 57.035 45.455 3.36 0.00 0.00 2.75
4256 4559 4.202264 CGAACCTGCCACCTTAAGATAGAT 60.202 45.833 3.36 0.00 0.00 1.98
4257 4560 3.132289 CGAACCTGCCACCTTAAGATAGA 59.868 47.826 3.36 0.00 0.00 1.98
4258 4561 3.118738 ACGAACCTGCCACCTTAAGATAG 60.119 47.826 3.36 0.00 0.00 2.08
4259 4562 2.835764 ACGAACCTGCCACCTTAAGATA 59.164 45.455 3.36 0.00 0.00 1.98
4260 4563 1.628846 ACGAACCTGCCACCTTAAGAT 59.371 47.619 3.36 0.00 0.00 2.40
4261 4564 1.001633 GACGAACCTGCCACCTTAAGA 59.998 52.381 3.36 0.00 0.00 2.10
4262 4565 1.439679 GACGAACCTGCCACCTTAAG 58.560 55.000 0.00 0.00 0.00 1.85
4263 4566 0.320073 CGACGAACCTGCCACCTTAA 60.320 55.000 0.00 0.00 0.00 1.85
4264 4567 1.180456 TCGACGAACCTGCCACCTTA 61.180 55.000 0.00 0.00 0.00 2.69
4265 4568 2.030562 CGACGAACCTGCCACCTT 59.969 61.111 0.00 0.00 0.00 3.50
4266 4569 2.915659 TCGACGAACCTGCCACCT 60.916 61.111 0.00 0.00 0.00 4.00
4267 4570 2.737376 GTCGACGAACCTGCCACC 60.737 66.667 0.00 0.00 0.00 4.61
4268 4571 3.103911 CGTCGACGAACCTGCCAC 61.104 66.667 33.35 0.00 43.02 5.01
4269 4572 3.289062 TCGTCGACGAACCTGCCA 61.289 61.111 36.25 12.96 46.30 4.92
4278 4581 2.572243 GCCTTACATAGATCGTCGACG 58.428 52.381 31.30 31.30 41.45 5.12
4279 4582 2.032204 ACGCCTTACATAGATCGTCGAC 60.032 50.000 5.18 5.18 30.74 4.20
4280 4583 2.032290 CACGCCTTACATAGATCGTCGA 60.032 50.000 0.00 0.00 33.01 4.20
4281 4584 2.286831 ACACGCCTTACATAGATCGTCG 60.287 50.000 0.00 0.00 33.01 5.12
4282 4585 3.351020 ACACGCCTTACATAGATCGTC 57.649 47.619 0.00 0.00 33.01 4.20
4283 4586 3.129813 TCAACACGCCTTACATAGATCGT 59.870 43.478 0.00 0.00 34.70 3.73
4284 4587 3.702330 TCAACACGCCTTACATAGATCG 58.298 45.455 0.00 0.00 0.00 3.69
4285 4588 4.051922 CCTCAACACGCCTTACATAGATC 58.948 47.826 0.00 0.00 0.00 2.75
4286 4589 3.181465 CCCTCAACACGCCTTACATAGAT 60.181 47.826 0.00 0.00 0.00 1.98
4287 4590 2.167693 CCCTCAACACGCCTTACATAGA 59.832 50.000 0.00 0.00 0.00 1.98
4288 4591 2.550978 CCCTCAACACGCCTTACATAG 58.449 52.381 0.00 0.00 0.00 2.23
4289 4592 1.406341 GCCCTCAACACGCCTTACATA 60.406 52.381 0.00 0.00 0.00 2.29
4290 4593 0.676782 GCCCTCAACACGCCTTACAT 60.677 55.000 0.00 0.00 0.00 2.29
4291 4594 1.302192 GCCCTCAACACGCCTTACA 60.302 57.895 0.00 0.00 0.00 2.41
4292 4595 2.038837 GGCCCTCAACACGCCTTAC 61.039 63.158 0.00 0.00 39.70 2.34
4293 4596 2.349755 GGCCCTCAACACGCCTTA 59.650 61.111 0.00 0.00 39.70 2.69
4307 4610 4.067913 CAAACATGCACCCCGGCC 62.068 66.667 0.00 0.00 0.00 6.13
4308 4611 4.740431 GCAAACATGCACCCCGGC 62.740 66.667 0.00 0.00 34.41 6.13
4309 4612 4.067913 GGCAAACATGCACCCCGG 62.068 66.667 0.00 0.00 36.33 5.73
4310 4613 3.285523 CTGGCAAACATGCACCCCG 62.286 63.158 2.97 0.00 36.33 5.73
4311 4614 1.470996 TTCTGGCAAACATGCACCCC 61.471 55.000 2.97 0.00 36.33 4.95
4312 4615 0.392336 TTTCTGGCAAACATGCACCC 59.608 50.000 2.97 0.00 36.33 4.61
4313 4616 2.237393 TTTTCTGGCAAACATGCACC 57.763 45.000 2.97 0.00 36.33 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.