Multiple sequence alignment - TraesCS7D01G404900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G404900 chr7D 100.000 3690 0 0 1 3690 522505208 522501519 0.000000e+00 6815
1 TraesCS7D01G404900 chr7D 96.610 177 5 1 350 526 39001285 39001460 3.600000e-75 292
2 TraesCS7D01G404900 chr7A 93.316 3052 146 25 671 3690 602806697 602803672 0.000000e+00 4453
3 TraesCS7D01G404900 chr7A 94.624 186 9 1 343 527 320981166 320981351 1.680000e-73 287
4 TraesCS7D01G404900 chr7A 85.081 248 34 3 2941 3186 297943014 297943260 2.200000e-62 250
5 TraesCS7D01G404900 chr7A 82.609 253 36 7 2941 3191 28036442 28036196 2.230000e-52 217
6 TraesCS7D01G404900 chr7B 91.982 1534 57 20 512 2020 556459007 556457515 0.000000e+00 2091
7 TraesCS7D01G404900 chr7B 93.545 945 36 9 2013 2943 556457084 556456151 0.000000e+00 1384
8 TraesCS7D01G404900 chr7B 83.838 198 17 7 150 347 556459191 556459009 1.360000e-39 174
9 TraesCS7D01G404900 chr7B 82.000 150 19 3 3457 3601 84247171 84247317 1.800000e-23 121
10 TraesCS7D01G404900 chr7B 87.000 100 9 1 3252 3351 556455577 556455482 3.900000e-20 110
11 TraesCS7D01G404900 chr6B 89.018 947 82 12 1012 1941 11574700 11575641 0.000000e+00 1153
12 TraesCS7D01G404900 chr6B 86.769 650 77 3 2040 2689 11577456 11578096 0.000000e+00 715
13 TraesCS7D01G404900 chr6D 88.191 940 95 9 1012 1940 6319416 6320350 0.000000e+00 1107
14 TraesCS7D01G404900 chr6D 87.519 657 73 4 2033 2689 6320578 6321225 0.000000e+00 750
15 TraesCS7D01G404900 chr6D 85.061 656 89 4 2035 2690 6328274 6328920 0.000000e+00 660
16 TraesCS7D01G404900 chr6D 96.629 178 6 0 337 514 206560451 206560274 2.790000e-76 296
17 TraesCS7D01G404900 chr6A 87.949 946 91 14 1012 1940 5861569 5862508 0.000000e+00 1094
18 TraesCS7D01G404900 chr6A 98.246 114 2 0 238 351 573531034 573530921 2.250000e-47 200
19 TraesCS7D01G404900 chr6A 75.000 236 49 10 2043 2273 64506064 64505834 2.340000e-17 100
20 TraesCS7D01G404900 chr1D 78.309 627 122 13 2060 2678 492534871 492534251 3.450000e-105 392
21 TraesCS7D01G404900 chr1D 97.688 173 4 0 350 522 178466306 178466478 7.750000e-77 298
22 TraesCS7D01G404900 chr1A 77.389 628 126 15 2060 2678 590996272 590995652 3.500000e-95 359
23 TraesCS7D01G404900 chr4A 98.286 175 3 0 350 524 362068075 362067901 1.290000e-79 307
24 TraesCS7D01G404900 chr5A 98.256 172 2 1 345 516 382566634 382566804 2.150000e-77 300
25 TraesCS7D01G404900 chr5A 96.629 178 4 2 350 526 651496822 651496998 1.000000e-75 294
26 TraesCS7D01G404900 chr4B 96.067 178 7 0 349 526 551080080 551079903 1.300000e-74 291
27 TraesCS7D01G404900 chr2D 96.067 178 7 0 341 518 575354300 575354477 1.300000e-74 291
28 TraesCS7D01G404900 chr2D 84.000 250 33 4 2942 3187 537931643 537931889 2.220000e-57 233
29 TraesCS7D01G404900 chr2D 81.746 252 44 2 2941 3191 56434659 56434409 3.730000e-50 209
30 TraesCS7D01G404900 chr5B 85.200 250 34 3 2941 3190 302843278 302843524 1.700000e-63 254
31 TraesCS7D01G404900 chr3B 83.333 246 40 1 2941 3185 559885508 559885263 3.710000e-55 226
32 TraesCS7D01G404900 chr3D 83.065 248 36 3 2941 3185 898825 899069 1.730000e-53 220
33 TraesCS7D01G404900 chr4D 82.114 246 38 6 2941 3183 509277763 509278005 4.830000e-49 206
34 TraesCS7D01G404900 chr5D 97.368 114 3 0 238 351 88172806 88172919 1.050000e-45 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G404900 chr7D 522501519 522505208 3689 True 6815.00 6815 100.00000 1 3690 1 chr7D.!!$R1 3689
1 TraesCS7D01G404900 chr7A 602803672 602806697 3025 True 4453.00 4453 93.31600 671 3690 1 chr7A.!!$R2 3019
2 TraesCS7D01G404900 chr7B 556455482 556459191 3709 True 939.75 2091 89.09125 150 3351 4 chr7B.!!$R1 3201
3 TraesCS7D01G404900 chr6B 11574700 11578096 3396 False 934.00 1153 87.89350 1012 2689 2 chr6B.!!$F1 1677
4 TraesCS7D01G404900 chr6D 6319416 6321225 1809 False 928.50 1107 87.85500 1012 2689 2 chr6D.!!$F2 1677
5 TraesCS7D01G404900 chr6D 6328274 6328920 646 False 660.00 660 85.06100 2035 2690 1 chr6D.!!$F1 655
6 TraesCS7D01G404900 chr6A 5861569 5862508 939 False 1094.00 1094 87.94900 1012 1940 1 chr6A.!!$F1 928
7 TraesCS7D01G404900 chr1D 492534251 492534871 620 True 392.00 392 78.30900 2060 2678 1 chr1D.!!$R1 618
8 TraesCS7D01G404900 chr1A 590995652 590996272 620 True 359.00 359 77.38900 2060 2678 1 chr1A.!!$R1 618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
137 138 0.105246 ACATTCCAAACTGGGCCCAA 60.105 50.0 28.29 9.66 38.32 4.12 F
177 178 0.113580 GGAAACAAAGGCCAGGGGTA 59.886 55.0 5.01 0.00 0.00 3.69 F
893 914 0.666577 GACGTGCCACCTGTACAGTC 60.667 60.0 21.18 6.97 0.00 3.51 F
899 920 0.670546 CCACCTGTACAGTCTTGCCG 60.671 60.0 21.18 6.79 0.00 5.69 F
2009 3793 0.243907 ATCCACAACCTCAGTCGTCG 59.756 55.0 0.00 0.00 0.00 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1332 1371 0.034756 AGTTGTACGCCATGTGCTCA 59.965 50.000 4.92 0.00 38.05 4.26 R
1725 1766 0.040067 GTTTCTTCAGCCTGGCAACG 60.040 55.000 22.65 8.97 42.51 4.10 R
1735 1776 1.576421 GGCGGTGCAGTTTCTTCAG 59.424 57.895 0.00 0.00 0.00 3.02 R
2113 4339 1.746615 CTTCAGCATGTCCGGGTGG 60.747 63.158 0.00 0.00 37.40 4.61 R
3628 6388 0.872388 CAGGCACCGTAACAAGGAAC 59.128 55.000 0.00 0.00 0.00 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.744316 CGGGTGTATCTTACCGGC 57.256 61.111 0.00 0.00 42.48 6.13
40 41 1.068585 CGGGTGTATCTTACCGGCC 59.931 63.158 0.00 0.00 42.48 6.13
41 42 1.678598 CGGGTGTATCTTACCGGCCA 61.679 60.000 0.00 0.00 42.48 5.36
42 43 0.106149 GGGTGTATCTTACCGGCCAG 59.894 60.000 0.00 0.00 39.14 4.85
44 45 1.117150 GTGTATCTTACCGGCCAGGA 58.883 55.000 18.74 0.00 45.00 3.86
45 46 1.483415 GTGTATCTTACCGGCCAGGAA 59.517 52.381 18.74 1.56 45.00 3.36
46 47 1.483415 TGTATCTTACCGGCCAGGAAC 59.517 52.381 18.74 0.42 45.00 3.62
47 48 0.748450 TATCTTACCGGCCAGGAACG 59.252 55.000 18.74 7.32 45.00 3.95
48 49 0.974010 ATCTTACCGGCCAGGAACGA 60.974 55.000 18.74 11.49 45.00 3.85
49 50 0.974010 TCTTACCGGCCAGGAACGAT 60.974 55.000 18.74 0.62 45.00 3.73
50 51 0.107848 CTTACCGGCCAGGAACGATT 60.108 55.000 18.74 0.00 45.00 3.34
51 52 0.325602 TTACCGGCCAGGAACGATTT 59.674 50.000 18.74 0.00 45.00 2.17
52 53 0.391927 TACCGGCCAGGAACGATTTG 60.392 55.000 18.74 0.00 45.00 2.32
53 54 2.485122 CGGCCAGGAACGATTTGC 59.515 61.111 2.24 0.00 0.00 3.68
55 56 2.485122 GCCAGGAACGATTTGCGG 59.515 61.111 0.00 0.00 46.49 5.69
56 57 3.051392 GCCAGGAACGATTTGCGGG 62.051 63.158 0.00 0.00 46.49 6.13
57 58 2.485122 CAGGAACGATTTGCGGGC 59.515 61.111 0.00 0.00 46.49 6.13
58 59 3.124921 AGGAACGATTTGCGGGCG 61.125 61.111 0.00 0.00 46.49 6.13
59 60 4.174129 GGAACGATTTGCGGGCGG 62.174 66.667 0.00 0.00 46.49 6.13
60 61 3.122323 GAACGATTTGCGGGCGGA 61.122 61.111 0.00 0.00 46.49 5.54
61 62 2.670251 AACGATTTGCGGGCGGAA 60.670 55.556 0.00 0.00 46.49 4.30
62 63 2.190101 GAACGATTTGCGGGCGGAAA 62.190 55.000 0.00 0.00 46.49 3.13
63 64 2.202427 CGATTTGCGGGCGGAAAC 60.202 61.111 0.00 0.00 38.20 2.78
76 77 3.715839 GGAAACGAAAACGACGGAC 57.284 52.632 0.00 0.00 34.93 4.79
77 78 0.929615 GGAAACGAAAACGACGGACA 59.070 50.000 0.00 0.00 34.93 4.02
78 79 1.071041 GGAAACGAAAACGACGGACAG 60.071 52.381 0.00 0.00 34.93 3.51
79 80 1.589779 GAAACGAAAACGACGGACAGT 59.410 47.619 0.00 0.00 34.93 3.55
80 81 0.925466 AACGAAAACGACGGACAGTG 59.075 50.000 0.00 0.00 34.93 3.66
81 82 0.872881 ACGAAAACGACGGACAGTGG 60.873 55.000 0.00 0.00 34.93 4.00
82 83 1.568025 GAAAACGACGGACAGTGGC 59.432 57.895 0.00 0.00 31.20 5.01
83 84 1.838568 GAAAACGACGGACAGTGGCC 61.839 60.000 4.30 4.30 31.20 5.36
84 85 2.319890 AAAACGACGGACAGTGGCCT 62.320 55.000 14.67 0.00 31.20 5.19
85 86 2.989055 AAACGACGGACAGTGGCCTG 62.989 60.000 14.67 9.44 44.68 4.85
117 118 6.313744 ACAAGGGTATTCAAAGAAGAAACG 57.686 37.500 0.00 0.00 0.00 3.60
118 119 6.059484 ACAAGGGTATTCAAAGAAGAAACGA 58.941 36.000 0.00 0.00 0.00 3.85
119 120 6.017357 ACAAGGGTATTCAAAGAAGAAACGAC 60.017 38.462 0.00 0.00 0.00 4.34
120 121 5.617252 AGGGTATTCAAAGAAGAAACGACA 58.383 37.500 0.00 0.00 0.00 4.35
121 122 6.238648 AGGGTATTCAAAGAAGAAACGACAT 58.761 36.000 0.00 0.00 0.00 3.06
122 123 6.715264 AGGGTATTCAAAGAAGAAACGACATT 59.285 34.615 0.00 0.00 0.00 2.71
123 124 7.021790 GGGTATTCAAAGAAGAAACGACATTC 58.978 38.462 0.00 0.00 0.00 2.67
124 125 7.021790 GGTATTCAAAGAAGAAACGACATTCC 58.978 38.462 0.00 0.00 0.00 3.01
125 126 6.633500 ATTCAAAGAAGAAACGACATTCCA 57.367 33.333 0.00 0.00 0.00 3.53
126 127 6.443934 TTCAAAGAAGAAACGACATTCCAA 57.556 33.333 0.00 0.00 0.00 3.53
127 128 6.443934 TCAAAGAAGAAACGACATTCCAAA 57.556 33.333 0.00 0.00 0.00 3.28
128 129 6.262601 TCAAAGAAGAAACGACATTCCAAAC 58.737 36.000 0.00 0.00 0.00 2.93
129 130 6.094881 TCAAAGAAGAAACGACATTCCAAACT 59.905 34.615 0.00 0.00 0.00 2.66
130 131 5.424121 AGAAGAAACGACATTCCAAACTG 57.576 39.130 0.00 0.00 0.00 3.16
131 132 4.275936 AGAAGAAACGACATTCCAAACTGG 59.724 41.667 0.00 0.00 39.43 4.00
132 133 2.884639 AGAAACGACATTCCAAACTGGG 59.115 45.455 0.00 0.00 38.32 4.45
133 134 0.958822 AACGACATTCCAAACTGGGC 59.041 50.000 0.00 0.00 38.32 5.36
134 135 0.893727 ACGACATTCCAAACTGGGCC 60.894 55.000 0.00 0.00 38.32 5.80
135 136 1.595093 CGACATTCCAAACTGGGCCC 61.595 60.000 17.59 17.59 38.32 5.80
136 137 0.541764 GACATTCCAAACTGGGCCCA 60.542 55.000 26.67 26.67 38.32 5.36
137 138 0.105246 ACATTCCAAACTGGGCCCAA 60.105 50.000 28.29 9.66 38.32 4.12
138 139 1.055040 CATTCCAAACTGGGCCCAAA 58.945 50.000 28.29 16.84 38.32 3.28
139 140 1.002315 CATTCCAAACTGGGCCCAAAG 59.998 52.381 28.29 18.34 38.32 2.77
140 141 1.406860 TTCCAAACTGGGCCCAAAGC 61.407 55.000 28.29 0.00 38.32 3.51
141 142 1.838396 CCAAACTGGGCCCAAAGCT 60.838 57.895 28.29 7.79 43.05 3.74
142 143 1.410050 CCAAACTGGGCCCAAAGCTT 61.410 55.000 28.29 13.48 43.05 3.74
143 144 0.469494 CAAACTGGGCCCAAAGCTTT 59.531 50.000 28.29 17.06 43.05 3.51
144 145 1.134128 CAAACTGGGCCCAAAGCTTTT 60.134 47.619 28.29 16.30 43.05 2.27
145 146 0.758734 AACTGGGCCCAAAGCTTTTC 59.241 50.000 28.29 1.63 43.05 2.29
146 147 1.121407 ACTGGGCCCAAAGCTTTTCC 61.121 55.000 28.29 10.80 43.05 3.13
147 148 2.158561 CTGGGCCCAAAGCTTTTCCG 62.159 60.000 28.29 5.86 43.05 4.30
148 149 2.656646 GGCCCAAAGCTTTTCCGG 59.343 61.111 9.53 10.42 43.05 5.14
156 157 3.550842 CCAAAGCTTTTCCGGAGTTGAAG 60.551 47.826 9.53 9.19 0.00 3.02
160 161 2.550208 GCTTTTCCGGAGTTGAAGAGGA 60.550 50.000 17.71 0.00 0.00 3.71
167 168 3.251004 CCGGAGTTGAAGAGGAAACAAAG 59.749 47.826 0.00 0.00 0.00 2.77
175 176 0.900182 GAGGAAACAAAGGCCAGGGG 60.900 60.000 5.01 0.00 0.00 4.79
176 177 1.152333 GGAAACAAAGGCCAGGGGT 60.152 57.895 5.01 0.00 0.00 4.95
177 178 0.113580 GGAAACAAAGGCCAGGGGTA 59.886 55.000 5.01 0.00 0.00 3.69
212 213 5.016051 ACCATATCACTACAAGTCTGCAG 57.984 43.478 7.63 7.63 0.00 4.41
218 219 1.694150 ACTACAAGTCTGCAGCCAAGA 59.306 47.619 9.47 0.00 0.00 3.02
219 220 2.104792 ACTACAAGTCTGCAGCCAAGAA 59.895 45.455 9.47 0.00 0.00 2.52
220 221 2.057137 ACAAGTCTGCAGCCAAGAAA 57.943 45.000 9.47 0.00 0.00 2.52
221 222 2.378038 ACAAGTCTGCAGCCAAGAAAA 58.622 42.857 9.47 0.00 0.00 2.29
222 223 2.760092 ACAAGTCTGCAGCCAAGAAAAA 59.240 40.909 9.47 0.00 0.00 1.94
260 261 4.637534 AGGTCATCATTTCTGATTGTTCCG 59.362 41.667 0.00 0.00 40.20 4.30
261 262 4.396166 GGTCATCATTTCTGATTGTTCCGT 59.604 41.667 0.00 0.00 40.20 4.69
265 266 6.375174 TCATCATTTCTGATTGTTCCGTCATT 59.625 34.615 0.00 0.00 40.20 2.57
278 279 4.585955 TCCGTCATTAAGGTAGATGCTC 57.414 45.455 0.00 0.00 0.00 4.26
284 285 6.058183 GTCATTAAGGTAGATGCTCCATTGT 58.942 40.000 0.00 0.00 0.00 2.71
286 287 7.171678 GTCATTAAGGTAGATGCTCCATTGTAC 59.828 40.741 0.00 0.00 0.00 2.90
287 288 6.808321 TTAAGGTAGATGCTCCATTGTACT 57.192 37.500 0.00 0.00 0.00 2.73
288 289 4.946478 AGGTAGATGCTCCATTGTACTC 57.054 45.455 0.00 0.00 0.00 2.59
303 304 8.598916 TCCATTGTACTCCATAGTTCAAACTTA 58.401 33.333 0.00 0.00 43.49 2.24
304 305 8.883731 CCATTGTACTCCATAGTTCAAACTTAG 58.116 37.037 0.00 0.00 43.49 2.18
335 336 6.988580 TCTTGAATGTCATCATTTCTCGCTAT 59.011 34.615 0.00 0.00 43.33 2.97
343 344 4.746535 TCATTTCTCGCTATACCACCAA 57.253 40.909 0.00 0.00 0.00 3.67
347 348 6.929049 TCATTTCTCGCTATACCACCAATAAG 59.071 38.462 0.00 0.00 0.00 1.73
348 349 4.252971 TCTCGCTATACCACCAATAAGC 57.747 45.455 0.00 0.00 0.00 3.09
349 350 3.895656 TCTCGCTATACCACCAATAAGCT 59.104 43.478 0.00 0.00 0.00 3.74
350 351 5.074804 TCTCGCTATACCACCAATAAGCTA 58.925 41.667 0.00 0.00 0.00 3.32
351 352 5.048224 TCTCGCTATACCACCAATAAGCTAC 60.048 44.000 0.00 0.00 0.00 3.58
352 353 4.831155 TCGCTATACCACCAATAAGCTACT 59.169 41.667 0.00 0.00 0.00 2.57
353 354 5.048224 TCGCTATACCACCAATAAGCTACTC 60.048 44.000 0.00 0.00 0.00 2.59
354 355 5.480205 GCTATACCACCAATAAGCTACTCC 58.520 45.833 0.00 0.00 0.00 3.85
355 356 4.976540 ATACCACCAATAAGCTACTCCC 57.023 45.455 0.00 0.00 0.00 4.30
356 357 2.846950 ACCACCAATAAGCTACTCCCT 58.153 47.619 0.00 0.00 0.00 4.20
357 358 2.772515 ACCACCAATAAGCTACTCCCTC 59.227 50.000 0.00 0.00 0.00 4.30
358 359 2.104963 CCACCAATAAGCTACTCCCTCC 59.895 54.545 0.00 0.00 0.00 4.30
359 360 2.040178 ACCAATAAGCTACTCCCTCCG 58.960 52.381 0.00 0.00 0.00 4.63
360 361 2.040178 CCAATAAGCTACTCCCTCCGT 58.960 52.381 0.00 0.00 0.00 4.69
361 362 2.434702 CCAATAAGCTACTCCCTCCGTT 59.565 50.000 0.00 0.00 0.00 4.44
362 363 3.492829 CCAATAAGCTACTCCCTCCGTTC 60.493 52.174 0.00 0.00 0.00 3.95
363 364 2.822707 TAAGCTACTCCCTCCGTTCT 57.177 50.000 0.00 0.00 0.00 3.01
364 365 1.939980 AAGCTACTCCCTCCGTTCTT 58.060 50.000 0.00 0.00 0.00 2.52
365 366 2.822707 AGCTACTCCCTCCGTTCTTA 57.177 50.000 0.00 0.00 0.00 2.10
366 367 3.097342 AGCTACTCCCTCCGTTCTTAA 57.903 47.619 0.00 0.00 0.00 1.85
367 368 3.438183 AGCTACTCCCTCCGTTCTTAAA 58.562 45.455 0.00 0.00 0.00 1.52
368 369 4.031611 AGCTACTCCCTCCGTTCTTAAAT 58.968 43.478 0.00 0.00 0.00 1.40
369 370 5.206587 AGCTACTCCCTCCGTTCTTAAATA 58.793 41.667 0.00 0.00 0.00 1.40
370 371 5.839606 AGCTACTCCCTCCGTTCTTAAATAT 59.160 40.000 0.00 0.00 0.00 1.28
371 372 6.326843 AGCTACTCCCTCCGTTCTTAAATATT 59.673 38.462 0.00 0.00 0.00 1.28
372 373 6.990939 GCTACTCCCTCCGTTCTTAAATATTT 59.009 38.462 5.89 5.89 0.00 1.40
373 374 7.041984 GCTACTCCCTCCGTTCTTAAATATTTG 60.042 40.741 11.05 0.00 0.00 2.32
374 375 6.718294 ACTCCCTCCGTTCTTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
375 376 6.822170 ACTCCCTCCGTTCTTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
376 377 6.954232 TCCCTCCGTTCTTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
377 378 7.399634 TCCCTCCGTTCTTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
378 379 7.886446 TCCCTCCGTTCTTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
379 380 7.968405 CCCTCCGTTCTTAAATATTTGTCTTTG 59.032 37.037 11.05 0.00 0.00 2.77
380 381 8.512138 CCTCCGTTCTTAAATATTTGTCTTTGT 58.488 33.333 11.05 0.00 0.00 2.83
395 396 9.918630 ATTTGTCTTTGTAGAGATTTCAAATGG 57.081 29.630 0.00 0.00 33.94 3.16
396 397 8.690203 TTGTCTTTGTAGAGATTTCAAATGGA 57.310 30.769 0.00 0.00 32.04 3.41
397 398 8.099364 TGTCTTTGTAGAGATTTCAAATGGAC 57.901 34.615 0.00 0.00 32.28 4.02
398 399 7.939039 TGTCTTTGTAGAGATTTCAAATGGACT 59.061 33.333 0.00 0.00 32.57 3.85
399 400 9.436957 GTCTTTGTAGAGATTTCAAATGGACTA 57.563 33.333 0.00 0.00 30.68 2.59
400 401 9.436957 TCTTTGTAGAGATTTCAAATGGACTAC 57.563 33.333 0.00 0.00 32.04 2.73
401 402 8.561738 TTTGTAGAGATTTCAAATGGACTACC 57.438 34.615 11.87 0.00 0.00 3.18
414 415 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
415 416 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
416 417 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
417 418 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
418 419 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
419 420 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
420 421 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
421 422 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
422 423 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
423 424 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
425 426 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
454 455 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
455 456 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
456 457 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
457 458 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
458 459 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
459 460 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
460 461 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
461 462 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
462 463 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
463 464 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
464 465 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
465 466 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
466 467 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
467 468 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
468 469 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
469 470 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
470 471 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
471 472 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
472 473 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
473 474 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
474 475 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
475 476 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
476 477 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
477 478 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
478 479 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
479 480 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
480 481 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
481 482 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
482 483 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
483 484 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
484 485 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
485 486 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
486 487 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
487 488 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
488 489 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
489 490 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
490 491 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
491 492 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
492 493 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
505 506 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
506 507 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
507 508 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
508 509 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
509 510 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
510 511 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
520 521 2.584236 GAACGGAGGGAGTAGATGCTA 58.416 52.381 0.00 0.00 0.00 3.49
530 531 7.171630 AGGGAGTAGATGCTATATTTTACCG 57.828 40.000 0.00 0.00 0.00 4.02
551 552 1.006832 GCAGTTCATTCATACCGCGT 58.993 50.000 4.92 0.00 0.00 6.01
552 553 1.004927 GCAGTTCATTCATACCGCGTC 60.005 52.381 4.92 0.00 0.00 5.19
556 563 1.766069 TCATTCATACCGCGTCGATG 58.234 50.000 4.92 5.55 0.00 3.84
561 568 1.664649 ATACCGCGTCGATGCATGG 60.665 57.895 27.92 22.96 34.15 3.66
568 575 1.009078 CGTCGATGCATGGTTGATGT 58.991 50.000 2.46 0.00 34.14 3.06
569 576 2.200899 CGTCGATGCATGGTTGATGTA 58.799 47.619 2.46 0.00 34.14 2.29
570 577 2.033747 CGTCGATGCATGGTTGATGTAC 60.034 50.000 2.46 0.00 34.14 2.90
571 578 3.198068 GTCGATGCATGGTTGATGTACT 58.802 45.455 2.46 0.00 34.14 2.73
631 642 7.634671 TTGATATGCTCAAGTGATTGAACAT 57.365 32.000 10.63 10.63 38.97 2.71
635 646 5.518848 TGCTCAAGTGATTGAACATGTTT 57.481 34.783 13.36 0.00 0.00 2.83
638 649 6.262944 TGCTCAAGTGATTGAACATGTTTAGT 59.737 34.615 13.36 5.18 0.00 2.24
704 718 2.612972 CCTGCACAGTTTCCATACTCGT 60.613 50.000 0.00 0.00 0.00 4.18
710 724 5.221185 GCACAGTTTCCATACTCGTCCTATA 60.221 44.000 0.00 0.00 0.00 1.31
721 736 1.540267 TCGTCCTATAATCGCTCCAGC 59.460 52.381 0.00 0.00 37.78 4.85
736 751 3.268330 CTCCAGCGACAGTAGTACTACA 58.732 50.000 29.87 9.25 38.48 2.74
738 753 4.267536 TCCAGCGACAGTAGTACTACAAT 58.732 43.478 29.87 19.31 38.48 2.71
740 755 5.882000 TCCAGCGACAGTAGTACTACAATTA 59.118 40.000 29.87 7.08 38.48 1.40
834 855 6.462500 AGCTGCAAGAGACCATATTATAGTG 58.538 40.000 1.02 0.00 34.07 2.74
880 901 1.970917 CTTTGCCGGATGAGACGTGC 61.971 60.000 5.05 0.00 0.00 5.34
893 914 0.666577 GACGTGCCACCTGTACAGTC 60.667 60.000 21.18 6.97 0.00 3.51
899 920 0.670546 CCACCTGTACAGTCTTGCCG 60.671 60.000 21.18 6.79 0.00 5.69
911 932 2.358125 TTGCCGGTCATGTCCACG 60.358 61.111 9.71 0.00 0.00 4.94
912 933 3.171828 TTGCCGGTCATGTCCACGT 62.172 57.895 9.71 0.00 0.00 4.49
913 934 2.813908 GCCGGTCATGTCCACGTC 60.814 66.667 9.71 0.00 0.00 4.34
914 935 2.125673 CCGGTCATGTCCACGTCC 60.126 66.667 9.71 0.00 0.00 4.79
915 936 2.654289 CGGTCATGTCCACGTCCA 59.346 61.111 9.71 0.00 0.00 4.02
916 937 1.736645 CGGTCATGTCCACGTCCAC 60.737 63.158 9.71 0.00 0.00 4.02
923 944 2.115910 TCCACGTCCACCTACCGT 59.884 61.111 0.00 0.00 34.71 4.83
1020 1050 2.501128 CACCTCGTCGCCATGGAT 59.499 61.111 18.40 0.00 0.00 3.41
1089 1128 2.457598 TGCTATGTCCTCTTCTTCCGT 58.542 47.619 0.00 0.00 0.00 4.69
1092 1131 1.270907 ATGTCCTCTTCTTCCGTGCT 58.729 50.000 0.00 0.00 0.00 4.40
1563 1604 4.643385 GTGTGCACGACCAACGCG 62.643 66.667 13.13 3.53 46.94 6.01
1804 1845 3.080121 AGAGAAGGGCCGGAGCTG 61.080 66.667 5.05 0.00 39.73 4.24
2009 3793 0.243907 ATCCACAACCTCAGTCGTCG 59.756 55.000 0.00 0.00 0.00 5.12
2021 4243 0.388649 AGTCGTCGAATGTGCCTGAC 60.389 55.000 0.00 0.00 0.00 3.51
2731 4964 5.812127 CCACTGATTTGTCGTGATGATCTAA 59.188 40.000 0.00 0.00 0.00 2.10
2742 4975 5.598417 TCGTGATGATCTAATGGAGGAGAAA 59.402 40.000 0.00 0.00 0.00 2.52
2743 4976 5.925397 CGTGATGATCTAATGGAGGAGAAAG 59.075 44.000 0.00 0.00 0.00 2.62
2779 5013 2.286365 ATTGTTGTCGATGGGGTGTT 57.714 45.000 0.00 0.00 0.00 3.32
2810 5052 7.335171 ACCGTATTCAACTAAAATAGTTCCACC 59.665 37.037 0.00 0.00 45.38 4.61
2814 5056 8.706322 ATTCAACTAAAATAGTTCCACCTGTT 57.294 30.769 0.00 0.00 45.38 3.16
2819 5061 8.617290 ACTAAAATAGTTCCACCTGTTACTTG 57.383 34.615 0.00 0.00 34.86 3.16
2831 5073 6.457799 CCACCTGTTACTTGTGTACTGTTTTC 60.458 42.308 0.00 0.00 0.00 2.29
2899 5143 5.784750 TTGCTGTCACAAATTAGAGATCG 57.215 39.130 0.00 0.00 0.00 3.69
2907 5151 5.015733 CACAAATTAGAGATCGTTTCACGC 58.984 41.667 0.00 0.00 42.21 5.34
2917 5161 4.452455 AGATCGTTTCACGCAAAAGAGAAT 59.548 37.500 3.24 0.00 42.21 2.40
2930 5174 5.409214 GCAAAAGAGAATAAGGCAATGCAAA 59.591 36.000 7.79 0.00 0.00 3.68
2963 5208 1.616374 TGATAAGTGCCACACGTCAGA 59.384 47.619 0.00 0.00 39.64 3.27
2970 5215 1.413767 GCCACACGTCAGATGCGTAG 61.414 60.000 0.00 1.95 40.90 3.51
2992 5237 1.272147 ACTCCTGCCCTGACATTTTCC 60.272 52.381 0.00 0.00 0.00 3.13
3027 5272 0.532115 ACGCAAGGATGGCAAATTCC 59.468 50.000 0.00 0.00 46.39 3.01
3028 5273 0.531657 CGCAAGGATGGCAAATTCCA 59.468 50.000 8.26 0.00 30.95 3.53
3029 5274 1.470285 CGCAAGGATGGCAAATTCCAG 60.470 52.381 8.26 1.85 39.89 3.86
3030 5275 1.551883 GCAAGGATGGCAAATTCCAGT 59.448 47.619 8.26 0.00 39.89 4.00
3031 5276 2.675889 GCAAGGATGGCAAATTCCAGTG 60.676 50.000 8.26 6.66 39.89 3.66
3032 5277 2.827322 CAAGGATGGCAAATTCCAGTGA 59.173 45.455 8.26 0.00 39.89 3.41
3033 5278 2.450476 AGGATGGCAAATTCCAGTGAC 58.550 47.619 8.26 0.00 39.89 3.67
3034 5279 2.170166 GGATGGCAAATTCCAGTGACA 58.830 47.619 0.70 0.00 39.89 3.58
3035 5280 2.094545 GGATGGCAAATTCCAGTGACAC 60.095 50.000 0.00 0.00 39.89 3.67
3036 5281 2.064434 TGGCAAATTCCAGTGACACA 57.936 45.000 8.59 0.00 0.00 3.72
3037 5282 2.596346 TGGCAAATTCCAGTGACACAT 58.404 42.857 8.59 0.00 0.00 3.21
3038 5283 3.760738 TGGCAAATTCCAGTGACACATA 58.239 40.909 8.59 0.00 0.00 2.29
3051 5296 3.365220 GTGACACATAGCGAGTTTCTGTC 59.635 47.826 0.00 0.00 0.00 3.51
3058 5303 7.172532 ACACATAGCGAGTTTCTGTCAAAAATA 59.827 33.333 0.00 0.00 0.00 1.40
3074 5319 8.655092 TGTCAAAAATAAACTGAAGCACAAAAG 58.345 29.630 0.00 0.00 0.00 2.27
3078 5323 6.588348 AATAAACTGAAGCACAAAAGTTGC 57.412 33.333 0.00 0.00 40.52 4.17
3083 5328 1.528161 GAAGCACAAAAGTTGCCATGC 59.472 47.619 0.00 0.00 41.18 4.06
3084 5329 0.754472 AGCACAAAAGTTGCCATGCT 59.246 45.000 0.00 0.00 41.18 3.79
3087 5332 2.823984 CACAAAAGTTGCCATGCTTGA 58.176 42.857 0.22 0.00 0.00 3.02
3091 5336 3.756933 AAAGTTGCCATGCTTGACAAT 57.243 38.095 4.69 0.00 0.00 2.71
3110 5355 6.403866 ACAATTAAAGTTGTCATCCTTGCA 57.596 33.333 0.00 0.00 37.80 4.08
3115 5360 3.430042 AGTTGTCATCCTTGCATCACT 57.570 42.857 0.00 0.00 0.00 3.41
3123 5368 5.182001 GTCATCCTTGCATCACTAAACTTGT 59.818 40.000 0.00 0.00 0.00 3.16
3163 5408 1.374631 TCATGTGCTCGTGCCACTC 60.375 57.895 7.05 0.00 38.71 3.51
3166 5411 2.661866 GTGCTCGTGCCACTCGTT 60.662 61.111 7.05 0.00 38.71 3.85
3172 5417 0.319083 TCGTGCCACTCGTTTGGTAT 59.681 50.000 6.87 0.00 39.09 2.73
3179 5424 4.634004 TGCCACTCGTTTGGTATTTATCAG 59.366 41.667 6.87 0.00 39.09 2.90
3191 5436 8.817092 TTGGTATTTATCAGGGTCCTAAAAAG 57.183 34.615 0.00 0.00 0.00 2.27
3192 5437 7.935405 TGGTATTTATCAGGGTCCTAAAAAGT 58.065 34.615 0.00 0.00 0.00 2.66
3194 5439 9.910267 GGTATTTATCAGGGTCCTAAAAAGTTA 57.090 33.333 0.00 0.00 0.00 2.24
3353 6113 4.226394 TGGCATTATAAGGGCATATACCGT 59.774 41.667 20.80 0.00 40.39 4.83
3358 6118 7.308951 GCATTATAAGGGCATATACCGTTGTTT 60.309 37.037 9.72 0.00 38.25 2.83
3359 6119 9.221933 CATTATAAGGGCATATACCGTTGTTTA 57.778 33.333 9.72 0.00 38.25 2.01
3422 6182 9.669353 GAGATGGCAATAAAAACATATGTACAG 57.331 33.333 9.21 0.00 0.00 2.74
3478 6238 9.847224 AGTAACCAGTTATTCCTAAATATGTGG 57.153 33.333 0.00 0.00 36.99 4.17
3556 6316 6.301169 TCTTATTTCTCTTTCCTCCACCTC 57.699 41.667 0.00 0.00 0.00 3.85
3571 6331 3.007940 TCCACCTCCGCATTTATCCTATG 59.992 47.826 0.00 0.00 0.00 2.23
3577 6337 2.226437 CCGCATTTATCCTATGTGGCAC 59.774 50.000 11.55 11.55 44.13 5.01
3579 6339 3.187227 CGCATTTATCCTATGTGGCACTC 59.813 47.826 19.83 0.00 35.26 3.51
3580 6340 3.187227 GCATTTATCCTATGTGGCACTCG 59.813 47.826 19.83 6.79 35.26 4.18
3586 6346 3.296854 TCCTATGTGGCACTCGTAAGAT 58.703 45.455 19.83 4.39 40.37 2.40
3591 6351 7.418597 TCCTATGTGGCACTCGTAAGATAAAAT 60.419 37.037 19.83 1.38 40.37 1.82
3603 6363 8.122306 TCGTAAGATAAAATCATTGTACACGG 57.878 34.615 0.00 0.00 45.01 4.94
3614 6374 4.762765 TCATTGTACACGGCCTAACATTTT 59.237 37.500 0.00 0.00 0.00 1.82
3618 6378 1.202952 ACACGGCCTAACATTTTCCCA 60.203 47.619 0.00 0.00 0.00 4.37
3628 6388 1.724429 CATTTTCCCAAATGCCACCG 58.276 50.000 0.00 0.00 42.20 4.94
3634 6394 1.184970 CCCAAATGCCACCGTTCCTT 61.185 55.000 0.00 0.00 0.00 3.36
3646 6406 0.601841 CGTTCCTTGTTACGGTGCCT 60.602 55.000 0.00 0.00 34.30 4.75
3663 6423 1.002544 GCCTGTTGCTAGAAGGACACT 59.997 52.381 0.00 0.00 36.87 3.55
3685 6445 2.064434 TTTGGTGACCATGCTCACAA 57.936 45.000 20.10 8.63 42.17 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 4.502962 CCGGTAAGATACACCCGTAAAAA 58.497 43.478 0.00 0.00 38.79 1.94
17 18 3.678529 GCCGGTAAGATACACCCGTAAAA 60.679 47.826 1.90 0.00 38.79 1.52
18 19 2.159114 GCCGGTAAGATACACCCGTAAA 60.159 50.000 1.90 0.00 38.79 2.01
19 20 1.408702 GCCGGTAAGATACACCCGTAA 59.591 52.381 1.90 0.00 38.79 3.18
20 21 1.032014 GCCGGTAAGATACACCCGTA 58.968 55.000 1.90 0.00 38.79 4.02
21 22 1.679559 GGCCGGTAAGATACACCCGT 61.680 60.000 1.90 0.00 38.79 5.28
22 23 1.068585 GGCCGGTAAGATACACCCG 59.931 63.158 1.90 0.00 40.12 5.28
23 24 0.106149 CTGGCCGGTAAGATACACCC 59.894 60.000 2.29 0.00 31.96 4.61
24 25 0.106149 CCTGGCCGGTAAGATACACC 59.894 60.000 11.58 0.00 0.00 4.16
25 26 1.117150 TCCTGGCCGGTAAGATACAC 58.883 55.000 11.58 0.00 0.00 2.90
26 27 1.483415 GTTCCTGGCCGGTAAGATACA 59.517 52.381 11.58 0.00 0.00 2.29
27 28 1.537562 CGTTCCTGGCCGGTAAGATAC 60.538 57.143 11.58 2.14 0.00 2.24
28 29 0.748450 CGTTCCTGGCCGGTAAGATA 59.252 55.000 11.58 0.00 0.00 1.98
29 30 0.974010 TCGTTCCTGGCCGGTAAGAT 60.974 55.000 11.58 0.00 0.00 2.40
30 31 0.974010 ATCGTTCCTGGCCGGTAAGA 60.974 55.000 11.58 10.58 0.00 2.10
31 32 0.107848 AATCGTTCCTGGCCGGTAAG 60.108 55.000 11.58 5.42 0.00 2.34
32 33 0.325602 AAATCGTTCCTGGCCGGTAA 59.674 50.000 11.58 0.00 0.00 2.85
33 34 0.391927 CAAATCGTTCCTGGCCGGTA 60.392 55.000 11.58 0.00 0.00 4.02
34 35 1.674322 CAAATCGTTCCTGGCCGGT 60.674 57.895 11.58 0.00 0.00 5.28
35 36 3.051392 GCAAATCGTTCCTGGCCGG 62.051 63.158 3.88 3.88 0.00 6.13
36 37 2.485122 GCAAATCGTTCCTGGCCG 59.515 61.111 0.00 0.00 0.00 6.13
37 38 2.485122 CGCAAATCGTTCCTGGCC 59.515 61.111 0.00 0.00 0.00 5.36
38 39 2.485122 CCGCAAATCGTTCCTGGC 59.515 61.111 0.00 0.00 36.19 4.85
39 40 3.051392 GCCCGCAAATCGTTCCTGG 62.051 63.158 0.00 0.00 36.19 4.45
40 41 2.485122 GCCCGCAAATCGTTCCTG 59.515 61.111 0.00 0.00 36.19 3.86
41 42 3.124921 CGCCCGCAAATCGTTCCT 61.125 61.111 0.00 0.00 36.19 3.36
42 43 4.174129 CCGCCCGCAAATCGTTCC 62.174 66.667 0.00 0.00 36.19 3.62
43 44 2.190101 TTTCCGCCCGCAAATCGTTC 62.190 55.000 0.00 0.00 36.19 3.95
44 45 2.262303 TTTCCGCCCGCAAATCGTT 61.262 52.632 0.00 0.00 36.19 3.85
45 46 2.670251 TTTCCGCCCGCAAATCGT 60.670 55.556 0.00 0.00 36.19 3.73
46 47 2.202427 GTTTCCGCCCGCAAATCG 60.202 61.111 0.00 0.00 38.08 3.34
47 48 2.190101 TTCGTTTCCGCCCGCAAATC 62.190 55.000 0.00 0.00 0.00 2.17
48 49 1.797211 TTTCGTTTCCGCCCGCAAAT 61.797 50.000 0.00 0.00 0.00 2.32
49 50 2.001361 TTTTCGTTTCCGCCCGCAAA 62.001 50.000 0.00 0.00 0.00 3.68
50 51 2.478890 TTTTCGTTTCCGCCCGCAA 61.479 52.632 0.00 0.00 0.00 4.85
51 52 2.900838 TTTTCGTTTCCGCCCGCA 60.901 55.556 0.00 0.00 0.00 5.69
52 53 2.427905 GTTTTCGTTTCCGCCCGC 60.428 61.111 0.00 0.00 0.00 6.13
53 54 2.127534 CGTTTTCGTTTCCGCCCG 60.128 61.111 0.00 0.00 38.65 6.13
54 55 1.082561 GTCGTTTTCGTTTCCGCCC 60.083 57.895 0.00 0.00 44.46 6.13
55 56 1.437573 CGTCGTTTTCGTTTCCGCC 60.438 57.895 0.00 0.00 44.46 6.13
56 57 1.437573 CCGTCGTTTTCGTTTCCGC 60.438 57.895 0.00 0.00 44.46 5.54
57 58 0.111574 GTCCGTCGTTTTCGTTTCCG 60.112 55.000 0.00 0.00 44.46 4.30
58 59 0.929615 TGTCCGTCGTTTTCGTTTCC 59.070 50.000 0.00 0.00 44.46 3.13
59 60 1.589779 ACTGTCCGTCGTTTTCGTTTC 59.410 47.619 0.00 0.00 44.46 2.78
60 61 1.325338 CACTGTCCGTCGTTTTCGTTT 59.675 47.619 0.00 0.00 44.46 3.60
61 62 0.925466 CACTGTCCGTCGTTTTCGTT 59.075 50.000 0.00 0.00 44.46 3.85
62 63 0.872881 CCACTGTCCGTCGTTTTCGT 60.873 55.000 0.00 0.00 44.46 3.85
63 64 1.850640 CCACTGTCCGTCGTTTTCG 59.149 57.895 0.00 0.00 45.64 3.46
64 65 1.568025 GCCACTGTCCGTCGTTTTC 59.432 57.895 0.00 0.00 0.00 2.29
65 66 1.890510 GGCCACTGTCCGTCGTTTT 60.891 57.895 0.00 0.00 0.00 2.43
66 67 2.280592 GGCCACTGTCCGTCGTTT 60.281 61.111 0.00 0.00 0.00 3.60
67 68 3.231736 AGGCCACTGTCCGTCGTT 61.232 61.111 5.01 0.00 0.00 3.85
68 69 3.991051 CAGGCCACTGTCCGTCGT 61.991 66.667 5.01 0.00 39.92 4.34
91 92 8.347035 CGTTTCTTCTTTGAATACCCTTGTAAA 58.653 33.333 0.00 0.00 0.00 2.01
92 93 7.716123 TCGTTTCTTCTTTGAATACCCTTGTAA 59.284 33.333 0.00 0.00 0.00 2.41
93 94 7.172019 GTCGTTTCTTCTTTGAATACCCTTGTA 59.828 37.037 0.00 0.00 0.00 2.41
94 95 6.017357 GTCGTTTCTTCTTTGAATACCCTTGT 60.017 38.462 0.00 0.00 0.00 3.16
95 96 6.017440 TGTCGTTTCTTCTTTGAATACCCTTG 60.017 38.462 0.00 0.00 0.00 3.61
96 97 6.059484 TGTCGTTTCTTCTTTGAATACCCTT 58.941 36.000 0.00 0.00 0.00 3.95
97 98 5.617252 TGTCGTTTCTTCTTTGAATACCCT 58.383 37.500 0.00 0.00 0.00 4.34
98 99 5.934935 TGTCGTTTCTTCTTTGAATACCC 57.065 39.130 0.00 0.00 0.00 3.69
99 100 7.021790 GGAATGTCGTTTCTTCTTTGAATACC 58.978 38.462 0.00 0.00 0.00 2.73
100 101 7.581476 TGGAATGTCGTTTCTTCTTTGAATAC 58.419 34.615 0.00 0.00 0.00 1.89
101 102 7.737972 TGGAATGTCGTTTCTTCTTTGAATA 57.262 32.000 0.00 0.00 0.00 1.75
102 103 6.633500 TGGAATGTCGTTTCTTCTTTGAAT 57.367 33.333 0.00 0.00 0.00 2.57
103 104 6.443934 TTGGAATGTCGTTTCTTCTTTGAA 57.556 33.333 0.00 0.00 0.00 2.69
104 105 6.094881 AGTTTGGAATGTCGTTTCTTCTTTGA 59.905 34.615 0.00 0.00 0.00 2.69
105 106 6.197096 CAGTTTGGAATGTCGTTTCTTCTTTG 59.803 38.462 0.00 0.00 0.00 2.77
106 107 6.265577 CAGTTTGGAATGTCGTTTCTTCTTT 58.734 36.000 0.00 0.00 0.00 2.52
107 108 5.221048 CCAGTTTGGAATGTCGTTTCTTCTT 60.221 40.000 0.00 0.00 40.96 2.52
108 109 4.275936 CCAGTTTGGAATGTCGTTTCTTCT 59.724 41.667 0.00 0.00 40.96 2.85
109 110 4.537015 CCAGTTTGGAATGTCGTTTCTTC 58.463 43.478 0.00 0.00 40.96 2.87
110 111 3.317993 CCCAGTTTGGAATGTCGTTTCTT 59.682 43.478 0.00 0.00 40.96 2.52
111 112 2.884639 CCCAGTTTGGAATGTCGTTTCT 59.115 45.455 0.00 0.00 40.96 2.52
112 113 2.607038 GCCCAGTTTGGAATGTCGTTTC 60.607 50.000 0.00 0.00 40.96 2.78
113 114 1.339929 GCCCAGTTTGGAATGTCGTTT 59.660 47.619 0.00 0.00 40.96 3.60
114 115 0.958822 GCCCAGTTTGGAATGTCGTT 59.041 50.000 0.00 0.00 40.96 3.85
115 116 0.893727 GGCCCAGTTTGGAATGTCGT 60.894 55.000 0.00 0.00 40.96 4.34
116 117 1.595093 GGGCCCAGTTTGGAATGTCG 61.595 60.000 19.95 0.00 40.96 4.35
117 118 0.541764 TGGGCCCAGTTTGGAATGTC 60.542 55.000 24.45 0.00 40.96 3.06
118 119 0.105246 TTGGGCCCAGTTTGGAATGT 60.105 50.000 26.87 0.00 40.96 2.71
119 120 1.002315 CTTTGGGCCCAGTTTGGAATG 59.998 52.381 26.87 6.73 40.96 2.67
120 121 1.351076 CTTTGGGCCCAGTTTGGAAT 58.649 50.000 26.87 0.00 40.96 3.01
121 122 1.406860 GCTTTGGGCCCAGTTTGGAA 61.407 55.000 26.87 14.58 40.96 3.53
122 123 1.836604 GCTTTGGGCCCAGTTTGGA 60.837 57.895 26.87 5.91 40.96 3.53
123 124 1.410050 AAGCTTTGGGCCCAGTTTGG 61.410 55.000 26.87 14.94 43.05 3.28
124 125 0.469494 AAAGCTTTGGGCCCAGTTTG 59.531 50.000 26.87 16.81 43.05 2.93
125 126 1.140852 GAAAAGCTTTGGGCCCAGTTT 59.859 47.619 26.87 19.36 43.05 2.66
126 127 0.758734 GAAAAGCTTTGGGCCCAGTT 59.241 50.000 26.87 14.43 43.05 3.16
127 128 1.121407 GGAAAAGCTTTGGGCCCAGT 61.121 55.000 26.87 8.49 43.05 4.00
128 129 1.673477 GGAAAAGCTTTGGGCCCAG 59.327 57.895 26.87 16.29 43.05 4.45
129 130 2.206536 CGGAAAAGCTTTGGGCCCA 61.207 57.895 24.45 24.45 43.05 5.36
130 131 2.656646 CGGAAAAGCTTTGGGCCC 59.343 61.111 17.59 17.59 43.05 5.80
131 132 1.877576 CTCCGGAAAAGCTTTGGGCC 61.878 60.000 13.54 13.39 43.05 5.80
132 133 1.179174 ACTCCGGAAAAGCTTTGGGC 61.179 55.000 13.54 5.47 42.19 5.36
133 134 1.000274 CAACTCCGGAAAAGCTTTGGG 60.000 52.381 13.54 14.33 0.00 4.12
134 135 1.953686 TCAACTCCGGAAAAGCTTTGG 59.046 47.619 13.54 10.09 0.00 3.28
135 136 3.315191 TCTTCAACTCCGGAAAAGCTTTG 59.685 43.478 13.54 1.13 0.00 2.77
136 137 3.551846 TCTTCAACTCCGGAAAAGCTTT 58.448 40.909 5.23 5.69 0.00 3.51
137 138 3.142174 CTCTTCAACTCCGGAAAAGCTT 58.858 45.455 5.23 0.00 0.00 3.74
138 139 2.551071 CCTCTTCAACTCCGGAAAAGCT 60.551 50.000 5.23 0.00 0.00 3.74
139 140 1.807142 CCTCTTCAACTCCGGAAAAGC 59.193 52.381 5.23 0.00 0.00 3.51
140 141 3.402628 TCCTCTTCAACTCCGGAAAAG 57.597 47.619 5.23 7.38 0.00 2.27
141 142 3.849563 TTCCTCTTCAACTCCGGAAAA 57.150 42.857 5.23 0.00 31.29 2.29
142 143 3.118186 TGTTTCCTCTTCAACTCCGGAAA 60.118 43.478 5.23 0.00 40.38 3.13
143 144 2.436542 TGTTTCCTCTTCAACTCCGGAA 59.563 45.455 5.23 0.00 32.30 4.30
144 145 2.043992 TGTTTCCTCTTCAACTCCGGA 58.956 47.619 2.93 2.93 0.00 5.14
145 146 2.543777 TGTTTCCTCTTCAACTCCGG 57.456 50.000 0.00 0.00 0.00 5.14
146 147 3.251004 CCTTTGTTTCCTCTTCAACTCCG 59.749 47.826 0.00 0.00 0.00 4.63
147 148 3.004839 GCCTTTGTTTCCTCTTCAACTCC 59.995 47.826 0.00 0.00 0.00 3.85
148 149 3.004839 GGCCTTTGTTTCCTCTTCAACTC 59.995 47.826 0.00 0.00 0.00 3.01
156 157 0.900182 CCCCTGGCCTTTGTTTCCTC 60.900 60.000 3.32 0.00 0.00 3.71
160 161 0.541998 GCTACCCCTGGCCTTTGTTT 60.542 55.000 3.32 0.00 0.00 2.83
197 198 1.802960 CTTGGCTGCAGACTTGTAGTG 59.197 52.381 22.80 0.00 39.03 2.74
221 222 6.552008 TGATGACCTGGTTTATCTCCTTTTT 58.448 36.000 19.31 0.00 0.00 1.94
222 223 6.139679 TGATGACCTGGTTTATCTCCTTTT 57.860 37.500 19.31 0.00 0.00 2.27
223 224 5.779241 TGATGACCTGGTTTATCTCCTTT 57.221 39.130 19.31 0.00 0.00 3.11
224 225 5.983333 ATGATGACCTGGTTTATCTCCTT 57.017 39.130 19.31 0.00 0.00 3.36
225 226 5.983333 AATGATGACCTGGTTTATCTCCT 57.017 39.130 19.31 7.52 0.00 3.69
226 227 6.261826 CAGAAATGATGACCTGGTTTATCTCC 59.738 42.308 19.31 10.09 0.00 3.71
227 228 7.050377 TCAGAAATGATGACCTGGTTTATCTC 58.950 38.462 19.31 12.22 0.00 2.75
228 229 6.962182 TCAGAAATGATGACCTGGTTTATCT 58.038 36.000 19.31 7.91 0.00 1.98
260 261 6.058183 ACAATGGAGCATCTACCTTAATGAC 58.942 40.000 0.00 0.00 33.73 3.06
261 262 6.252599 ACAATGGAGCATCTACCTTAATGA 57.747 37.500 0.00 0.00 33.73 2.57
265 266 5.304614 GGAGTACAATGGAGCATCTACCTTA 59.695 44.000 0.00 0.00 33.73 2.69
278 279 7.687941 AAGTTTGAACTATGGAGTACAATGG 57.312 36.000 0.00 0.00 38.57 3.16
284 285 8.654485 TGGTACTAAGTTTGAACTATGGAGTA 57.346 34.615 0.00 1.57 38.57 2.59
286 287 8.478877 AGATGGTACTAAGTTTGAACTATGGAG 58.521 37.037 0.00 0.00 38.57 3.86
287 288 8.375493 AGATGGTACTAAGTTTGAACTATGGA 57.625 34.615 0.00 0.00 38.57 3.41
288 289 8.883731 CAAGATGGTACTAAGTTTGAACTATGG 58.116 37.037 0.00 0.00 38.57 2.74
303 304 8.051535 AGAAATGATGACATTCAAGATGGTACT 58.948 33.333 0.00 0.00 44.67 2.73
304 305 8.218338 AGAAATGATGACATTCAAGATGGTAC 57.782 34.615 0.00 0.00 44.67 3.34
306 307 6.037940 CGAGAAATGATGACATTCAAGATGGT 59.962 38.462 0.00 0.00 44.67 3.55
335 336 3.965347 GAGGGAGTAGCTTATTGGTGGTA 59.035 47.826 0.00 0.00 0.00 3.25
343 344 3.315880 AGAACGGAGGGAGTAGCTTAT 57.684 47.619 0.00 0.00 0.00 1.73
347 348 3.881937 TTTAAGAACGGAGGGAGTAGC 57.118 47.619 0.00 0.00 0.00 3.58
348 349 7.985752 ACAAATATTTAAGAACGGAGGGAGTAG 59.014 37.037 0.00 0.00 0.00 2.57
349 350 7.854337 ACAAATATTTAAGAACGGAGGGAGTA 58.146 34.615 0.00 0.00 0.00 2.59
350 351 6.718294 ACAAATATTTAAGAACGGAGGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
351 352 7.048512 AGACAAATATTTAAGAACGGAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
352 353 6.954232 AGACAAATATTTAAGAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
353 354 7.625828 AAGACAAATATTTAAGAACGGAGGG 57.374 36.000 0.00 0.00 0.00 4.30
354 355 8.512138 ACAAAGACAAATATTTAAGAACGGAGG 58.488 33.333 0.00 0.00 0.00 4.30
369 370 9.918630 CCATTTGAAATCTCTACAAAGACAAAT 57.081 29.630 0.00 0.00 35.46 2.32
370 371 9.130661 TCCATTTGAAATCTCTACAAAGACAAA 57.869 29.630 0.00 0.00 37.04 2.83
371 372 8.567948 GTCCATTTGAAATCTCTACAAAGACAA 58.432 33.333 0.00 0.00 37.04 3.18
372 373 7.939039 AGTCCATTTGAAATCTCTACAAAGACA 59.061 33.333 0.00 0.00 37.04 3.41
373 374 8.329203 AGTCCATTTGAAATCTCTACAAAGAC 57.671 34.615 0.00 0.00 37.04 3.01
374 375 9.436957 GTAGTCCATTTGAAATCTCTACAAAGA 57.563 33.333 13.64 0.00 37.04 2.52
375 376 8.669243 GGTAGTCCATTTGAAATCTCTACAAAG 58.331 37.037 17.23 0.00 37.04 2.77
376 377 8.160765 TGGTAGTCCATTTGAAATCTCTACAAA 58.839 33.333 17.23 0.00 39.03 2.83
377 378 7.606456 GTGGTAGTCCATTTGAAATCTCTACAA 59.394 37.037 17.23 9.45 46.20 2.41
378 379 7.103641 GTGGTAGTCCATTTGAAATCTCTACA 58.896 38.462 17.23 7.84 46.20 2.74
379 380 7.103641 TGTGGTAGTCCATTTGAAATCTCTAC 58.896 38.462 11.66 11.66 46.20 2.59
380 381 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
381 382 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
382 383 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
383 384 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
384 385 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
385 386 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
386 387 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
387 388 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
388 389 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
389 390 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
390 391 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
391 392 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
392 393 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
393 394 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
394 395 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
395 396 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
396 397 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
397 398 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
399 400 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
432 433 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
433 434 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
434 435 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
435 436 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
436 437 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
437 438 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
438 439 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
439 440 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
440 441 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
441 442 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
442 443 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
443 444 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
444 445 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
445 446 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
446 447 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
447 448 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
448 449 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
449 450 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
450 451 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
451 452 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
452 453 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
453 454 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
454 455 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
455 456 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
456 457 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
458 459 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
459 460 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
460 461 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
461 462 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
462 463 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
463 464 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
464 465 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
465 466 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
466 467 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
479 480 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
480 481 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
481 482 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
482 483 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
483 484 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
484 485 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
485 486 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
486 487 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
487 488 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
488 489 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
489 490 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
490 491 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
491 492 6.379579 TCTACTCCCTCCGTTCCTAAATATT 58.620 40.000 0.00 0.00 0.00 1.28
492 493 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
493 494 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
494 495 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
495 496 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
496 497 3.563223 CATCTACTCCCTCCGTTCCTAA 58.437 50.000 0.00 0.00 0.00 2.69
497 498 2.752154 GCATCTACTCCCTCCGTTCCTA 60.752 54.545 0.00 0.00 0.00 2.94
498 499 2.030045 GCATCTACTCCCTCCGTTCCT 61.030 57.143 0.00 0.00 0.00 3.36
499 500 0.389757 GCATCTACTCCCTCCGTTCC 59.610 60.000 0.00 0.00 0.00 3.62
500 501 1.404843 AGCATCTACTCCCTCCGTTC 58.595 55.000 0.00 0.00 0.00 3.95
501 502 2.750141 TAGCATCTACTCCCTCCGTT 57.250 50.000 0.00 0.00 0.00 4.44
502 503 2.982339 ATAGCATCTACTCCCTCCGT 57.018 50.000 0.00 0.00 0.00 4.69
503 504 5.923733 AAATATAGCATCTACTCCCTCCG 57.076 43.478 0.00 0.00 0.00 4.63
504 505 7.557724 GGTAAAATATAGCATCTACTCCCTCC 58.442 42.308 0.00 0.00 0.00 4.30
505 506 7.259161 CGGTAAAATATAGCATCTACTCCCTC 58.741 42.308 0.00 0.00 0.00 4.30
506 507 6.351117 GCGGTAAAATATAGCATCTACTCCCT 60.351 42.308 0.00 0.00 0.00 4.20
507 508 5.811100 GCGGTAAAATATAGCATCTACTCCC 59.189 44.000 0.00 0.00 0.00 4.30
508 509 5.515626 CGCGGTAAAATATAGCATCTACTCC 59.484 44.000 0.00 0.00 0.00 3.85
509 510 5.004535 GCGCGGTAAAATATAGCATCTACTC 59.995 44.000 8.83 0.00 0.00 2.59
510 511 4.863131 GCGCGGTAAAATATAGCATCTACT 59.137 41.667 8.83 0.00 0.00 2.57
520 521 4.334203 TGAATGAACTGCGCGGTAAAATAT 59.666 37.500 24.63 5.29 0.00 1.28
530 531 0.316196 GCGGTATGAATGAACTGCGC 60.316 55.000 0.00 0.00 38.16 6.09
551 552 3.541996 AGTACATCAACCATGCATCGA 57.458 42.857 0.00 0.00 35.65 3.59
552 553 5.929697 ATAAGTACATCAACCATGCATCG 57.070 39.130 0.00 0.00 35.65 3.84
631 642 9.826574 ATTCGCAGATATAAAGGTTACTAAACA 57.173 29.630 0.00 0.00 34.69 2.83
653 667 7.463544 TGTGCACAGTTATAGAATTTCATTCG 58.536 34.615 17.42 0.00 43.92 3.34
663 677 5.178061 CAGGTGAATGTGCACAGTTATAGA 58.822 41.667 25.84 0.00 40.52 1.98
665 679 3.689161 GCAGGTGAATGTGCACAGTTATA 59.311 43.478 25.84 10.43 40.52 0.98
666 680 2.489329 GCAGGTGAATGTGCACAGTTAT 59.511 45.455 25.84 11.13 40.52 1.89
834 855 3.887110 ACCACAGCTTTTACTTACCAACC 59.113 43.478 0.00 0.00 0.00 3.77
864 885 4.451150 GGCACGTCTCATCCGGCA 62.451 66.667 0.00 0.00 0.00 5.69
880 901 0.670546 CGGCAAGACTGTACAGGTGG 60.671 60.000 26.12 12.04 0.00 4.61
893 914 2.390599 CGTGGACATGACCGGCAAG 61.391 63.158 0.00 0.00 0.00 4.01
899 920 1.375523 GGTGGACGTGGACATGACC 60.376 63.158 7.32 7.32 33.68 4.02
915 936 2.573609 GATGAAGGCGCACGGTAGGT 62.574 60.000 10.83 0.00 0.00 3.08
916 937 1.883084 GATGAAGGCGCACGGTAGG 60.883 63.158 10.83 0.00 0.00 3.18
923 944 0.960364 GGGTTCAAGATGAAGGCGCA 60.960 55.000 10.83 0.00 37.00 6.09
1020 1050 0.759436 GGAGCAACGGGAGAGGGATA 60.759 60.000 0.00 0.00 0.00 2.59
1332 1371 0.034756 AGTTGTACGCCATGTGCTCA 59.965 50.000 4.92 0.00 38.05 4.26
1725 1766 0.040067 GTTTCTTCAGCCTGGCAACG 60.040 55.000 22.65 8.97 42.51 4.10
1735 1776 1.576421 GGCGGTGCAGTTTCTTCAG 59.424 57.895 0.00 0.00 0.00 3.02
2009 3793 2.675348 GCAGAGTTAGTCAGGCACATTC 59.325 50.000 0.00 0.00 0.00 2.67
2113 4339 1.746615 CTTCAGCATGTCCGGGTGG 60.747 63.158 0.00 0.00 37.40 4.61
2731 4964 2.982488 ACAACTGGACTTTCTCCTCCAT 59.018 45.455 0.00 0.00 40.26 3.41
2742 4975 5.165961 ACAATACATAGCACAACTGGACT 57.834 39.130 0.00 0.00 0.00 3.85
2743 4976 5.181245 ACAACAATACATAGCACAACTGGAC 59.819 40.000 0.00 0.00 0.00 4.02
2779 5013 7.844009 ACTATTTTAGTTGAATACGGTGAGGA 58.156 34.615 0.00 0.00 34.86 3.71
2810 5052 7.534085 TCTGAAAACAGTACACAAGTAACAG 57.466 36.000 0.00 0.00 30.67 3.16
2814 5056 9.772973 ATGTTATCTGAAAACAGTACACAAGTA 57.227 29.630 0.00 0.00 40.00 2.24
2819 5061 7.667043 TCCATGTTATCTGAAAACAGTACAC 57.333 36.000 0.00 0.00 40.00 2.90
2899 5143 4.617223 GCCTTATTCTCTTTTGCGTGAAAC 59.383 41.667 0.00 0.00 0.00 2.78
2907 5151 7.360607 CCTTTTGCATTGCCTTATTCTCTTTTG 60.361 37.037 6.12 0.00 0.00 2.44
3027 5272 3.366121 CAGAAACTCGCTATGTGTCACTG 59.634 47.826 4.27 0.00 0.00 3.66
3028 5273 3.005897 ACAGAAACTCGCTATGTGTCACT 59.994 43.478 4.27 0.00 0.00 3.41
3029 5274 3.318017 ACAGAAACTCGCTATGTGTCAC 58.682 45.455 0.00 0.00 0.00 3.67
3030 5275 3.005367 TGACAGAAACTCGCTATGTGTCA 59.995 43.478 1.44 1.44 42.74 3.58
3031 5276 3.575630 TGACAGAAACTCGCTATGTGTC 58.424 45.455 0.00 0.00 37.73 3.67
3032 5277 3.660501 TGACAGAAACTCGCTATGTGT 57.339 42.857 0.00 0.00 0.00 3.72
3033 5278 4.990543 TTTGACAGAAACTCGCTATGTG 57.009 40.909 0.00 0.00 0.00 3.21
3034 5279 6.560253 ATTTTTGACAGAAACTCGCTATGT 57.440 33.333 0.00 0.00 0.00 2.29
3035 5280 8.840867 GTTTATTTTTGACAGAAACTCGCTATG 58.159 33.333 0.00 0.00 0.00 2.23
3036 5281 8.784043 AGTTTATTTTTGACAGAAACTCGCTAT 58.216 29.630 0.00 0.00 35.92 2.97
3037 5282 8.067784 CAGTTTATTTTTGACAGAAACTCGCTA 58.932 33.333 0.00 0.00 38.06 4.26
3038 5283 6.912591 CAGTTTATTTTTGACAGAAACTCGCT 59.087 34.615 0.00 0.00 38.06 4.93
3051 5296 9.264782 CAACTTTTGTGCTTCAGTTTATTTTTG 57.735 29.630 0.00 0.00 0.00 2.44
3058 5303 3.261580 GGCAACTTTTGTGCTTCAGTTT 58.738 40.909 0.00 0.00 0.00 2.66
3087 5332 6.403866 TGCAAGGATGACAACTTTAATTGT 57.596 33.333 0.00 0.00 45.52 2.71
3091 5336 5.769662 AGTGATGCAAGGATGACAACTTTAA 59.230 36.000 0.00 0.00 0.00 1.52
3132 5377 1.229428 CACATGACAGCTCCAAACGT 58.771 50.000 0.00 0.00 0.00 3.99
3142 5387 1.668793 TGGCACGAGCACATGACAG 60.669 57.895 7.26 0.00 44.61 3.51
3163 5408 4.777463 AGGACCCTGATAAATACCAAACG 58.223 43.478 0.00 0.00 0.00 3.60
3166 5411 8.395605 ACTTTTTAGGACCCTGATAAATACCAA 58.604 33.333 0.00 0.00 0.00 3.67
3179 5424 6.888088 ACATGGTGTATAACTTTTTAGGACCC 59.112 38.462 0.00 0.00 0.00 4.46
3226 5471 9.665264 GAAAACAAAGACTATTTGGTTGTAGAG 57.335 33.333 4.52 0.00 38.26 2.43
3231 5987 7.862873 GGAGAGAAAACAAAGACTATTTGGTTG 59.137 37.037 4.52 0.00 38.26 3.77
3232 5988 7.780271 AGGAGAGAAAACAAAGACTATTTGGTT 59.220 33.333 5.43 1.87 40.67 3.67
3274 6033 1.540435 TTTGCGGGAAATGGCCTTCC 61.540 55.000 14.18 14.18 43.69 3.46
3296 6055 9.740710 GTCATGGCCTAGGTTATTTCTATATTT 57.259 33.333 11.31 0.00 0.00 1.40
3444 6204 6.790319 AGGAATAACTGGTTACTGGTTGAAT 58.210 36.000 0.00 0.00 0.00 2.57
3502 6262 5.196695 AGGGCTTGCCTTCTCTTAATTAAG 58.803 41.667 17.60 17.60 34.65 1.85
3529 6289 7.017651 AGGTGGAGGAAAGAGAAATAAGAAGAA 59.982 37.037 0.00 0.00 0.00 2.52
3530 6290 6.502158 AGGTGGAGGAAAGAGAAATAAGAAGA 59.498 38.462 0.00 0.00 0.00 2.87
3556 6316 2.226437 GTGCCACATAGGATAAATGCGG 59.774 50.000 0.00 0.00 41.22 5.69
3571 6331 6.604735 ATGATTTTATCTTACGAGTGCCAC 57.395 37.500 0.00 0.00 0.00 5.01
3577 6337 8.266682 CCGTGTACAATGATTTTATCTTACGAG 58.733 37.037 0.00 0.00 0.00 4.18
3579 6339 6.844279 GCCGTGTACAATGATTTTATCTTACG 59.156 38.462 0.00 0.00 0.00 3.18
3580 6340 7.012044 AGGCCGTGTACAATGATTTTATCTTAC 59.988 37.037 0.00 0.00 0.00 2.34
3586 6346 5.938710 TGTTAGGCCGTGTACAATGATTTTA 59.061 36.000 0.00 0.00 0.00 1.52
3591 6351 3.620427 ATGTTAGGCCGTGTACAATGA 57.380 42.857 0.00 0.00 0.00 2.57
3595 6355 3.075884 GGAAAATGTTAGGCCGTGTACA 58.924 45.455 0.00 0.41 0.00 2.90
3598 6358 1.202952 TGGGAAAATGTTAGGCCGTGT 60.203 47.619 0.00 0.00 0.00 4.49
3601 6361 3.520569 CATTTGGGAAAATGTTAGGCCG 58.479 45.455 0.00 0.00 35.88 6.13
3603 6363 3.270027 GGCATTTGGGAAAATGTTAGGC 58.730 45.455 11.60 0.00 41.09 3.93
3614 6374 1.605165 GGAACGGTGGCATTTGGGA 60.605 57.895 0.00 0.00 0.00 4.37
3618 6378 1.408969 AACAAGGAACGGTGGCATTT 58.591 45.000 0.00 0.00 0.00 2.32
3628 6388 0.872388 CAGGCACCGTAACAAGGAAC 59.128 55.000 0.00 0.00 0.00 3.62
3634 6394 3.739167 GCAACAGGCACCGTAACA 58.261 55.556 0.00 0.00 43.97 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.