Multiple sequence alignment - TraesCS7D01G404600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G404600 chr7D 100.000 2992 0 0 1 2992 521903370 521906361 0.000000e+00 5526.0
1 TraesCS7D01G404600 chr5A 94.641 1530 56 8 801 2326 549974104 549975611 0.000000e+00 2348.0
2 TraesCS7D01G404600 chr5A 96.059 609 23 1 2 609 549973494 549974102 0.000000e+00 990.0
3 TraesCS7D01G404600 chr5A 93.417 319 21 0 1770 2088 599803069 599802751 9.710000e-130 473.0
4 TraesCS7D01G404600 chr5A 83.704 270 29 6 2094 2356 599802700 599802439 1.070000e-59 241.0
5 TraesCS7D01G404600 chr1B 95.287 679 31 1 1 678 492330833 492330155 0.000000e+00 1075.0
6 TraesCS7D01G404600 chr1B 84.615 481 54 10 803 1283 492329856 492329396 7.560000e-126 460.0
7 TraesCS7D01G404600 chr1B 82.540 441 46 16 1359 1771 492329354 492328917 2.840000e-95 359.0
8 TraesCS7D01G404600 chr1B 90.909 121 9 1 685 805 492330080 492329962 8.580000e-36 161.0
9 TraesCS7D01G404600 chr6A 96.393 610 21 1 1 609 93887435 93888044 0.000000e+00 1003.0
10 TraesCS7D01G404600 chr6A 96.173 392 13 2 801 1191 93888046 93888436 9.040000e-180 640.0
11 TraesCS7D01G404600 chr6A 92.523 214 9 3 1616 1827 93888470 93888678 1.740000e-77 300.0
12 TraesCS7D01G404600 chr1D 84.177 1106 84 37 680 1771 368280268 368279240 0.000000e+00 989.0
13 TraesCS7D01G404600 chr1D 90.247 687 60 6 1 683 368126625 368125942 0.000000e+00 891.0
14 TraesCS7D01G404600 chr1D 84.211 684 100 5 1 678 368281019 368280338 0.000000e+00 658.0
15 TraesCS7D01G404600 chr1D 85.687 517 43 14 784 1283 367917295 367916793 1.590000e-142 516.0
16 TraesCS7D01G404600 chr1D 86.014 429 41 11 1355 1771 367916757 367916336 2.740000e-120 442.0
17 TraesCS7D01G404600 chr1D 93.000 300 14 1 1792 2084 32535998 32536297 5.930000e-117 431.0
18 TraesCS7D01G404600 chr1D 90.397 302 19 3 2306 2598 32536007 32535707 3.620000e-104 388.0
19 TraesCS7D01G404600 chr1D 85.753 365 32 4 680 1044 368125877 368125533 4.710000e-98 368.0
20 TraesCS7D01G404600 chr1D 85.489 317 33 5 2288 2597 32537820 32538130 4.810000e-83 318.0
21 TraesCS7D01G404600 chr1D 90.052 191 14 4 1096 1284 368118441 368118254 2.980000e-60 243.0
22 TraesCS7D01G404600 chr1D 85.124 242 21 5 2086 2320 32536339 32536572 1.790000e-57 233.0
23 TraesCS7D01G404600 chr1A 85.352 908 61 22 680 1580 467193296 467192454 0.000000e+00 874.0
24 TraesCS7D01G404600 chr1A 84.311 682 94 4 1 678 467194037 467193365 0.000000e+00 654.0
25 TraesCS7D01G404600 chr1A 98.000 100 2 0 1672 1771 467192366 467192267 1.100000e-39 174.0
26 TraesCS7D01G404600 chr5B 94.801 327 15 1 1770 2094 589120616 589120290 2.660000e-140 508.0
27 TraesCS7D01G404600 chr5B 88.380 284 23 3 2086 2362 589120256 589119976 1.720000e-87 333.0
28 TraesCS7D01G404600 chr6D 94.671 319 17 0 1770 2088 277050731 277051049 2.070000e-136 496.0
29 TraesCS7D01G404600 chr6D 87.363 182 12 2 2271 2445 277049955 277049778 6.540000e-47 198.0
30 TraesCS7D01G404600 chr7A 89.567 393 29 4 2607 2992 602234939 602235326 3.470000e-134 488.0
31 TraesCS7D01G404600 chr7A 90.625 64 5 1 2655 2717 602221588 602221525 1.910000e-12 84.2
32 TraesCS7D01G404600 chr5D 93.730 319 20 0 1770 2088 480705894 480705576 2.090000e-131 479.0
33 TraesCS7D01G404600 chr5D 88.380 284 25 2 2323 2598 556914847 556914564 4.780000e-88 335.0
34 TraesCS7D01G404600 chr5D 85.357 280 24 7 2086 2356 480705538 480705267 1.060000e-69 274.0
35 TraesCS7D01G404600 chr5D 97.333 75 2 0 1911 1985 338409816 338409742 8.710000e-26 128.0
36 TraesCS7D01G404600 chr5D 94.231 52 3 0 746 797 338409864 338409813 2.470000e-11 80.5
37 TraesCS7D01G404600 chr5D 94.231 52 3 0 746 797 476456160 476456211 2.470000e-11 80.5
38 TraesCS7D01G404600 chr3A 92.476 319 24 0 1770 2088 19635270 19635588 9.780000e-125 457.0
39 TraesCS7D01G404600 chr3A 87.834 337 25 8 2271 2598 19634481 19634152 6.050000e-102 381.0
40 TraesCS7D01G404600 chr3A 85.537 242 20 6 2086 2320 19635626 19635859 3.850000e-59 239.0
41 TraesCS7D01G404600 chr7B 87.561 410 21 10 2599 2992 555716293 555716688 5.880000e-122 448.0
42 TraesCS7D01G404600 chr7B 87.603 121 10 2 2877 2992 555706361 555706241 5.200000e-28 135.0
43 TraesCS7D01G404600 chr2A 91.250 320 26 2 1770 2088 659737942 659738260 4.580000e-118 435.0
44 TraesCS7D01G404600 chr2A 88.427 337 26 6 2271 2598 659737154 659736822 7.770000e-106 394.0
45 TraesCS7D01G404600 chr2A 88.854 323 22 6 2288 2603 659739778 659740093 4.680000e-103 385.0
46 TraesCS7D01G404600 chr2B 91.964 224 18 0 2375 2598 711140160 711139937 6.230000e-82 315.0
47 TraesCS7D01G404600 chr2B 92.019 213 17 0 2386 2598 790893517 790893305 1.740000e-77 300.0
48 TraesCS7D01G404600 chr3D 91.549 213 18 0 2385 2597 103679178 103679390 8.110000e-76 294.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G404600 chr7D 521903370 521906361 2991 False 5526.000000 5526 100.000000 1 2992 1 chr7D.!!$F1 2991
1 TraesCS7D01G404600 chr5A 549973494 549975611 2117 False 1669.000000 2348 95.350000 2 2326 2 chr5A.!!$F1 2324
2 TraesCS7D01G404600 chr5A 599802439 599803069 630 True 357.000000 473 88.560500 1770 2356 2 chr5A.!!$R1 586
3 TraesCS7D01G404600 chr1B 492328917 492330833 1916 True 513.750000 1075 88.337750 1 1771 4 chr1B.!!$R1 1770
4 TraesCS7D01G404600 chr6A 93887435 93888678 1243 False 647.666667 1003 95.029667 1 1827 3 chr6A.!!$F1 1826
5 TraesCS7D01G404600 chr1D 368279240 368281019 1779 True 823.500000 989 84.194000 1 1771 2 chr1D.!!$R5 1770
6 TraesCS7D01G404600 chr1D 368125533 368126625 1092 True 629.500000 891 88.000000 1 1044 2 chr1D.!!$R4 1043
7 TraesCS7D01G404600 chr1D 367916336 367917295 959 True 479.000000 516 85.850500 784 1771 2 chr1D.!!$R3 987
8 TraesCS7D01G404600 chr1D 32535998 32538130 2132 False 327.333333 431 87.871000 1792 2597 3 chr1D.!!$F1 805
9 TraesCS7D01G404600 chr1A 467192267 467194037 1770 True 567.333333 874 89.221000 1 1771 3 chr1A.!!$R1 1770
10 TraesCS7D01G404600 chr5B 589119976 589120616 640 True 420.500000 508 91.590500 1770 2362 2 chr5B.!!$R1 592
11 TraesCS7D01G404600 chr5D 480705267 480705894 627 True 376.500000 479 89.543500 1770 2356 2 chr5D.!!$R3 586
12 TraesCS7D01G404600 chr3A 19635270 19635859 589 False 348.000000 457 89.006500 1770 2320 2 chr3A.!!$F1 550
13 TraesCS7D01G404600 chr2A 659737942 659740093 2151 False 410.000000 435 90.052000 1770 2603 2 chr2A.!!$F1 833

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
928 1137 2.104111 TGTTCGTCTCCATTCCTGTTGT 59.896 45.455 0.0 0.0 0.0 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2830 4466 0.027455 TTTCAAAGACTGCGTGCGTG 59.973 50.0 0.0 0.0 0.0 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
175 176 4.101448 GCCTCGACACCTGGGCAT 62.101 66.667 6.26 0.00 43.59 4.40
448 456 3.028130 TCACCAAGATCTACGGCATGTA 58.972 45.455 10.38 0.00 0.00 2.29
490 498 2.126618 CGACGACTGCAACCGCTA 60.127 61.111 7.24 0.00 39.64 4.26
541 549 4.689549 TTGCGACGGGAGGGAGGA 62.690 66.667 0.00 0.00 0.00 3.71
726 802 5.025190 TCTTGTTTTGAAATTGTCGTGTCG 58.975 37.500 0.00 0.00 0.00 4.35
766 842 7.921786 TTAGACATTTCTTTCGGTGATCAAT 57.078 32.000 0.00 0.00 32.75 2.57
767 843 6.824305 AGACATTTCTTTCGGTGATCAATT 57.176 33.333 0.00 0.00 0.00 2.32
768 844 6.846350 AGACATTTCTTTCGGTGATCAATTC 58.154 36.000 0.00 0.00 0.00 2.17
773 849 5.068234 TCTTTCGGTGATCAATTCGTAGT 57.932 39.130 0.00 0.00 0.00 2.73
786 862 6.943981 TCAATTCGTAGTGAGTTGAAAGTTG 58.056 36.000 1.05 0.00 46.52 3.16
928 1137 2.104111 TGTTCGTCTCCATTCCTGTTGT 59.896 45.455 0.00 0.00 0.00 3.32
1144 1367 3.764434 GACAGTGAGTATGGAGGAGACAA 59.236 47.826 0.00 0.00 0.00 3.18
1196 1419 1.225704 GCACTCTAAGGGCTGCCAT 59.774 57.895 22.05 11.43 42.59 4.40
1284 1507 2.096069 CACTGAACTTGGAACATGAGCG 60.096 50.000 0.00 0.00 39.30 5.03
1285 1508 0.874390 TGAACTTGGAACATGAGCGC 59.126 50.000 0.00 0.00 39.30 5.92
1333 1561 2.548057 TGAACTGAACAATCGACTTGGC 59.452 45.455 10.82 4.96 39.30 4.52
1339 1567 0.534203 ACAATCGACTTGGCGTGGTT 60.534 50.000 10.82 0.00 39.30 3.67
1340 1568 0.591170 CAATCGACTTGGCGTGGTTT 59.409 50.000 0.00 0.00 0.00 3.27
1341 1569 0.872388 AATCGACTTGGCGTGGTTTC 59.128 50.000 0.00 0.00 0.00 2.78
1342 1570 1.289109 ATCGACTTGGCGTGGTTTCG 61.289 55.000 0.00 0.00 0.00 3.46
1343 1571 1.952133 CGACTTGGCGTGGTTTCGA 60.952 57.895 0.00 0.00 0.00 3.71
1344 1572 1.568025 GACTTGGCGTGGTTTCGAC 59.432 57.895 0.00 0.00 39.54 4.20
1347 1575 3.649096 TGGCGTGGTTTCGACATG 58.351 55.556 0.00 0.00 44.20 3.21
1348 1576 1.069935 TGGCGTGGTTTCGACATGA 59.930 52.632 0.00 0.00 44.20 3.07
1349 1577 1.225376 TGGCGTGGTTTCGACATGAC 61.225 55.000 0.00 0.00 44.20 3.06
1416 1644 1.000955 GGTGAAGAGGCTGTCGAAGAA 59.999 52.381 0.00 0.00 39.69 2.52
1421 1649 0.603569 GAGGCTGTCGAAGAACTCCA 59.396 55.000 0.00 0.00 39.69 3.86
1637 1880 8.147642 AGTGACATTCAGTTTCAAGAGTTTAG 57.852 34.615 0.00 0.00 0.00 1.85
1644 1887 9.708092 ATTCAGTTTCAAGAGTTTAGGTACTAC 57.292 33.333 0.00 0.00 42.67 2.73
1645 1888 8.474710 TCAGTTTCAAGAGTTTAGGTACTACT 57.525 34.615 0.00 0.00 42.67 2.57
1646 1889 8.358148 TCAGTTTCAAGAGTTTAGGTACTACTG 58.642 37.037 0.00 0.00 42.67 2.74
1780 2058 1.306141 ATTCGAGGCAGGACTGGGA 60.306 57.895 1.01 0.00 0.00 4.37
1787 2065 2.665000 CAGGACTGGGACGTGCAT 59.335 61.111 9.96 0.00 0.00 3.96
1991 2279 3.840666 AGACCATGAAACCTCTGAGCTAA 59.159 43.478 0.00 0.00 0.00 3.09
1994 2282 4.042187 ACCATGAAACCTCTGAGCTAACTT 59.958 41.667 0.00 0.00 0.00 2.66
2096 2433 3.776340 GCTCTAAGCTGTCACTCCTAAC 58.224 50.000 0.00 0.00 38.45 2.34
2164 2503 3.711086 CAATCTGTCGTTGATCCGATCT 58.289 45.455 9.78 0.00 39.34 2.75
2195 2534 5.978934 AACGGATTGTACGGTTCATTATC 57.021 39.130 0.00 0.00 35.23 1.75
2198 2537 6.808829 ACGGATTGTACGGTTCATTATCTAA 58.191 36.000 0.00 0.00 35.23 2.10
2356 2702 7.873739 AAAATCGATGTTGAAATTTCCAGTC 57.126 32.000 15.48 7.59 0.00 3.51
2358 2704 4.393834 TCGATGTTGAAATTTCCAGTCCA 58.606 39.130 15.48 5.48 0.00 4.02
2368 4004 2.859165 TTCCAGTCCAACCACTGATC 57.141 50.000 2.08 0.00 45.92 2.92
2376 4012 1.156736 CAACCACTGATCGTTCACCC 58.843 55.000 0.00 0.00 0.00 4.61
2404 4040 4.116961 CGCGGGTTAATTAGACAAGATGA 58.883 43.478 0.00 0.00 0.00 2.92
2451 4087 2.253403 GAAGACCGGTCCACCCATCC 62.253 65.000 30.82 3.19 0.00 3.51
2501 4137 2.009774 CAGGACCAAATCGTCACATCC 58.990 52.381 0.00 0.00 34.24 3.51
2512 4148 3.669536 TCGTCACATCCAATGCAAGTTA 58.330 40.909 0.00 0.00 0.00 2.24
2513 4149 3.435327 TCGTCACATCCAATGCAAGTTAC 59.565 43.478 0.00 0.00 0.00 2.50
2520 4156 4.209307 TCCAATGCAAGTTACGGTATGA 57.791 40.909 0.00 0.00 0.00 2.15
2563 4199 6.378280 AGTTTGGGACTAAATCATCACATTCC 59.622 38.462 0.00 0.00 36.65 3.01
2598 4234 0.676782 CCTGGGGTGCTTTTACCTCG 60.677 60.000 0.00 0.00 44.54 4.63
2603 4239 2.501261 GGGTGCTTTTACCTCGAAACT 58.499 47.619 0.00 0.00 40.66 2.66
2604 4240 3.557686 GGGGTGCTTTTACCTCGAAACTA 60.558 47.826 0.00 0.00 40.66 2.24
2605 4241 4.067192 GGGTGCTTTTACCTCGAAACTAA 58.933 43.478 0.00 0.00 40.66 2.24
2606 4242 4.698780 GGGTGCTTTTACCTCGAAACTAAT 59.301 41.667 0.00 0.00 40.66 1.73
2607 4243 5.182570 GGGTGCTTTTACCTCGAAACTAATT 59.817 40.000 0.00 0.00 40.66 1.40
2608 4244 6.294342 GGGTGCTTTTACCTCGAAACTAATTT 60.294 38.462 0.00 0.00 40.66 1.82
2609 4245 6.581166 GGTGCTTTTACCTCGAAACTAATTTG 59.419 38.462 0.00 0.00 37.74 2.32
2610 4246 6.581166 GTGCTTTTACCTCGAAACTAATTTGG 59.419 38.462 0.00 0.00 0.00 3.28
2611 4247 6.263617 TGCTTTTACCTCGAAACTAATTTGGT 59.736 34.615 0.00 0.00 0.00 3.67
2612 4248 6.800408 GCTTTTACCTCGAAACTAATTTGGTC 59.200 38.462 0.00 0.00 0.00 4.02
2613 4249 7.308408 GCTTTTACCTCGAAACTAATTTGGTCT 60.308 37.037 0.00 0.00 0.00 3.85
2614 4250 7.662604 TTTACCTCGAAACTAATTTGGTCTC 57.337 36.000 0.00 0.00 0.00 3.36
2615 4251 5.223449 ACCTCGAAACTAATTTGGTCTCA 57.777 39.130 0.00 0.00 0.00 3.27
2616 4252 5.238583 ACCTCGAAACTAATTTGGTCTCAG 58.761 41.667 0.00 0.00 0.00 3.35
2617 4253 4.093556 CCTCGAAACTAATTTGGTCTCAGC 59.906 45.833 0.00 0.00 0.00 4.26
2618 4254 4.894784 TCGAAACTAATTTGGTCTCAGCT 58.105 39.130 0.00 0.00 0.00 4.24
2619 4255 4.690748 TCGAAACTAATTTGGTCTCAGCTG 59.309 41.667 7.63 7.63 0.00 4.24
2620 4256 4.670221 CGAAACTAATTTGGTCTCAGCTGC 60.670 45.833 9.47 0.00 0.00 5.25
2621 4257 2.716217 ACTAATTTGGTCTCAGCTGCC 58.284 47.619 9.47 5.26 0.00 4.85
2622 4258 1.667724 CTAATTTGGTCTCAGCTGCCG 59.332 52.381 9.47 2.34 0.00 5.69
2623 4259 0.250901 AATTTGGTCTCAGCTGCCGT 60.251 50.000 9.47 0.00 0.00 5.68
2624 4260 0.674895 ATTTGGTCTCAGCTGCCGTC 60.675 55.000 9.47 0.16 0.00 4.79
2625 4261 2.731691 TTTGGTCTCAGCTGCCGTCC 62.732 60.000 9.47 10.17 0.00 4.79
2626 4262 3.695606 GGTCTCAGCTGCCGTCCA 61.696 66.667 9.47 0.00 0.00 4.02
2627 4263 2.125753 GTCTCAGCTGCCGTCCAG 60.126 66.667 9.47 0.00 44.67 3.86
2634 4270 2.973899 CTGCCGTCCAGCTACAGT 59.026 61.111 0.00 0.00 34.21 3.55
2635 4271 1.446792 CTGCCGTCCAGCTACAGTG 60.447 63.158 0.00 0.00 34.21 3.66
2636 4272 2.159819 CTGCCGTCCAGCTACAGTGT 62.160 60.000 0.00 0.00 34.21 3.55
2637 4273 1.446272 GCCGTCCAGCTACAGTGTC 60.446 63.158 0.00 0.00 0.00 3.67
2638 4274 1.878656 GCCGTCCAGCTACAGTGTCT 61.879 60.000 0.00 0.00 0.00 3.41
2639 4275 1.460504 CCGTCCAGCTACAGTGTCTA 58.539 55.000 0.00 0.00 0.00 2.59
2640 4276 1.132643 CCGTCCAGCTACAGTGTCTAC 59.867 57.143 0.00 0.00 0.00 2.59
2641 4277 1.202043 CGTCCAGCTACAGTGTCTACG 60.202 57.143 0.00 0.00 0.00 3.51
2642 4278 1.811359 GTCCAGCTACAGTGTCTACGT 59.189 52.381 0.00 0.00 0.00 3.57
2643 4279 3.005554 GTCCAGCTACAGTGTCTACGTA 58.994 50.000 0.00 0.00 0.00 3.57
2644 4280 3.005554 TCCAGCTACAGTGTCTACGTAC 58.994 50.000 0.00 0.00 0.00 3.67
2645 4281 3.008330 CCAGCTACAGTGTCTACGTACT 58.992 50.000 0.00 0.00 0.00 2.73
2652 4288 3.925809 CAGTGTCTACGTACTGTCGATC 58.074 50.000 7.84 0.00 39.48 3.69
2653 4289 3.617706 CAGTGTCTACGTACTGTCGATCT 59.382 47.826 7.84 0.00 39.48 2.75
2654 4290 3.617706 AGTGTCTACGTACTGTCGATCTG 59.382 47.826 0.00 0.00 34.70 2.90
2655 4291 2.934553 TGTCTACGTACTGTCGATCTGG 59.065 50.000 0.00 0.00 34.70 3.86
2656 4292 2.935201 GTCTACGTACTGTCGATCTGGT 59.065 50.000 0.00 0.00 34.70 4.00
2657 4293 2.934553 TCTACGTACTGTCGATCTGGTG 59.065 50.000 0.00 0.00 34.70 4.17
2658 4294 0.809385 ACGTACTGTCGATCTGGTGG 59.191 55.000 0.00 0.00 34.70 4.61
2659 4295 1.092348 CGTACTGTCGATCTGGTGGA 58.908 55.000 0.00 0.00 0.00 4.02
2660 4296 1.676529 CGTACTGTCGATCTGGTGGAT 59.323 52.381 0.00 0.00 37.37 3.41
2661 4297 2.099263 CGTACTGTCGATCTGGTGGATT 59.901 50.000 0.00 0.00 34.33 3.01
2662 4298 2.969628 ACTGTCGATCTGGTGGATTC 57.030 50.000 0.00 0.00 34.33 2.52
2663 4299 2.179427 ACTGTCGATCTGGTGGATTCA 58.821 47.619 0.00 0.00 34.33 2.57
2664 4300 2.567169 ACTGTCGATCTGGTGGATTCAA 59.433 45.455 0.00 0.00 34.33 2.69
2665 4301 3.193263 CTGTCGATCTGGTGGATTCAAG 58.807 50.000 0.00 0.00 34.33 3.02
2666 4302 2.093500 TGTCGATCTGGTGGATTCAAGG 60.093 50.000 0.00 0.00 34.33 3.61
2667 4303 1.134401 TCGATCTGGTGGATTCAAGGC 60.134 52.381 0.00 0.00 34.33 4.35
2668 4304 1.134280 CGATCTGGTGGATTCAAGGCT 60.134 52.381 0.00 0.00 34.33 4.58
2669 4305 2.295885 GATCTGGTGGATTCAAGGCTG 58.704 52.381 0.00 0.00 34.33 4.85
2670 4306 0.329261 TCTGGTGGATTCAAGGCTGG 59.671 55.000 0.00 0.00 0.00 4.85
2671 4307 0.329261 CTGGTGGATTCAAGGCTGGA 59.671 55.000 0.00 0.00 0.00 3.86
2672 4308 0.329261 TGGTGGATTCAAGGCTGGAG 59.671 55.000 0.00 0.00 0.00 3.86
2673 4309 1.034292 GGTGGATTCAAGGCTGGAGC 61.034 60.000 0.00 0.00 41.14 4.70
2674 4310 0.034670 GTGGATTCAAGGCTGGAGCT 60.035 55.000 0.00 0.00 41.70 4.09
2675 4311 0.700564 TGGATTCAAGGCTGGAGCTT 59.299 50.000 0.00 0.00 41.70 3.74
2676 4312 1.340405 TGGATTCAAGGCTGGAGCTTC 60.340 52.381 0.00 0.00 41.70 3.86
2677 4313 1.340405 GGATTCAAGGCTGGAGCTTCA 60.340 52.381 0.00 0.00 41.70 3.02
2678 4314 2.652590 GATTCAAGGCTGGAGCTTCAT 58.347 47.619 0.00 0.00 41.70 2.57
2679 4315 2.119801 TTCAAGGCTGGAGCTTCATC 57.880 50.000 0.00 0.00 41.70 2.92
2680 4316 0.986527 TCAAGGCTGGAGCTTCATCA 59.013 50.000 0.00 0.00 41.70 3.07
2681 4317 1.562942 TCAAGGCTGGAGCTTCATCAT 59.437 47.619 0.00 0.00 41.70 2.45
2682 4318 2.025605 TCAAGGCTGGAGCTTCATCATT 60.026 45.455 0.00 0.00 41.70 2.57
2683 4319 2.758979 CAAGGCTGGAGCTTCATCATTT 59.241 45.455 0.00 0.00 41.70 2.32
2684 4320 2.652590 AGGCTGGAGCTTCATCATTTC 58.347 47.619 0.00 0.00 41.70 2.17
2685 4321 2.025605 AGGCTGGAGCTTCATCATTTCA 60.026 45.455 0.00 0.00 41.70 2.69
2686 4322 2.358267 GGCTGGAGCTTCATCATTTCAG 59.642 50.000 0.00 0.00 41.70 3.02
2687 4323 2.358267 GCTGGAGCTTCATCATTTCAGG 59.642 50.000 0.00 0.00 38.21 3.86
2688 4324 2.358267 CTGGAGCTTCATCATTTCAGGC 59.642 50.000 0.00 0.00 0.00 4.85
2689 4325 1.680207 GGAGCTTCATCATTTCAGGCC 59.320 52.381 0.00 0.00 0.00 5.19
2690 4326 2.652590 GAGCTTCATCATTTCAGGCCT 58.347 47.619 0.00 0.00 0.00 5.19
2691 4327 2.358267 GAGCTTCATCATTTCAGGCCTG 59.642 50.000 27.87 27.87 0.00 4.85
2692 4328 2.025605 AGCTTCATCATTTCAGGCCTGA 60.026 45.455 32.00 32.00 37.91 3.86
2693 4329 2.756760 GCTTCATCATTTCAGGCCTGAA 59.243 45.455 38.69 38.69 46.72 3.02
2703 4339 4.605640 TTCAGGCCTGAATTTGGAAAAG 57.394 40.909 38.69 7.83 43.90 2.27
2704 4340 2.899256 TCAGGCCTGAATTTGGAAAAGG 59.101 45.455 33.41 1.24 36.53 3.11
2706 4342 2.099141 GCCTGAATTTGGAAAAGGCC 57.901 50.000 0.00 0.00 46.31 5.19
2707 4343 1.672737 GCCTGAATTTGGAAAAGGCCG 60.673 52.381 0.00 0.00 46.31 6.13
2708 4344 1.672737 CCTGAATTTGGAAAAGGCCGC 60.673 52.381 0.00 0.00 0.00 6.53
2709 4345 1.273327 CTGAATTTGGAAAAGGCCGCT 59.727 47.619 0.00 0.00 0.00 5.52
2710 4346 1.000731 TGAATTTGGAAAAGGCCGCTG 59.999 47.619 0.00 0.00 0.00 5.18
2711 4347 1.272212 GAATTTGGAAAAGGCCGCTGA 59.728 47.619 0.00 0.00 0.00 4.26
2712 4348 1.337118 ATTTGGAAAAGGCCGCTGAA 58.663 45.000 0.00 0.00 0.00 3.02
2713 4349 1.337118 TTTGGAAAAGGCCGCTGAAT 58.663 45.000 0.00 0.00 0.00 2.57
2714 4350 0.602562 TTGGAAAAGGCCGCTGAATG 59.397 50.000 0.00 0.00 0.00 2.67
2715 4351 0.251121 TGGAAAAGGCCGCTGAATGA 60.251 50.000 0.00 0.00 0.00 2.57
2716 4352 0.453390 GGAAAAGGCCGCTGAATGAG 59.547 55.000 0.00 0.00 0.00 2.90
2717 4353 1.453155 GAAAAGGCCGCTGAATGAGA 58.547 50.000 0.00 0.00 0.00 3.27
2718 4354 1.812571 GAAAAGGCCGCTGAATGAGAA 59.187 47.619 0.00 0.00 0.00 2.87
2719 4355 1.457346 AAAGGCCGCTGAATGAGAAG 58.543 50.000 0.00 0.00 0.00 2.85
2720 4356 0.326264 AAGGCCGCTGAATGAGAAGT 59.674 50.000 0.00 0.00 0.00 3.01
2721 4357 1.195115 AGGCCGCTGAATGAGAAGTA 58.805 50.000 0.00 0.00 0.00 2.24
2722 4358 1.765314 AGGCCGCTGAATGAGAAGTAT 59.235 47.619 0.00 0.00 0.00 2.12
2723 4359 2.139118 GGCCGCTGAATGAGAAGTATC 58.861 52.381 0.00 0.00 0.00 2.24
2724 4360 1.789464 GCCGCTGAATGAGAAGTATCG 59.211 52.381 0.00 0.00 0.00 2.92
2725 4361 2.799917 GCCGCTGAATGAGAAGTATCGT 60.800 50.000 0.00 0.00 0.00 3.73
2726 4362 3.448686 CCGCTGAATGAGAAGTATCGTT 58.551 45.455 0.00 0.00 0.00 3.85
2727 4363 3.243877 CCGCTGAATGAGAAGTATCGTTG 59.756 47.826 0.00 0.00 0.00 4.10
2728 4364 3.302092 CGCTGAATGAGAAGTATCGTTGC 60.302 47.826 0.00 0.00 0.00 4.17
2729 4365 3.001736 GCTGAATGAGAAGTATCGTTGCC 59.998 47.826 0.00 0.00 0.00 4.52
2730 4366 4.183865 CTGAATGAGAAGTATCGTTGCCA 58.816 43.478 0.00 0.00 0.00 4.92
2731 4367 4.769688 TGAATGAGAAGTATCGTTGCCAT 58.230 39.130 0.00 0.00 0.00 4.40
2732 4368 4.571984 TGAATGAGAAGTATCGTTGCCATG 59.428 41.667 0.00 0.00 0.00 3.66
2733 4369 2.279741 TGAGAAGTATCGTTGCCATGC 58.720 47.619 0.00 0.00 0.00 4.06
2734 4370 1.599542 GAGAAGTATCGTTGCCATGCC 59.400 52.381 0.00 0.00 0.00 4.40
2735 4371 1.065491 AGAAGTATCGTTGCCATGCCA 60.065 47.619 0.00 0.00 0.00 4.92
2736 4372 1.949525 GAAGTATCGTTGCCATGCCAT 59.050 47.619 0.00 0.00 0.00 4.40
2737 4373 1.311859 AGTATCGTTGCCATGCCATG 58.688 50.000 0.00 0.00 0.00 3.66
2738 4374 0.318107 GTATCGTTGCCATGCCATGC 60.318 55.000 0.00 0.00 0.00 4.06
2739 4375 1.454572 TATCGTTGCCATGCCATGCC 61.455 55.000 0.00 0.00 0.00 4.40
2740 4376 3.761140 CGTTGCCATGCCATGCCA 61.761 61.111 0.00 0.00 0.00 4.92
2741 4377 2.185867 GTTGCCATGCCATGCCAG 59.814 61.111 0.00 0.00 0.00 4.85
2742 4378 3.078196 TTGCCATGCCATGCCAGG 61.078 61.111 0.00 0.00 0.00 4.45
2743 4379 3.603742 TTGCCATGCCATGCCAGGA 62.604 57.895 0.00 0.00 0.00 3.86
2744 4380 3.534056 GCCATGCCATGCCAGGAC 61.534 66.667 0.00 0.00 0.00 3.85
2745 4381 2.043752 CCATGCCATGCCAGGACA 60.044 61.111 0.00 0.00 0.00 4.02
2746 4382 2.125326 CCATGCCATGCCAGGACAG 61.125 63.158 0.00 0.00 0.00 3.51
2747 4383 1.379443 CATGCCATGCCAGGACAGT 60.379 57.895 0.00 0.00 0.00 3.55
2748 4384 1.379443 ATGCCATGCCAGGACAGTG 60.379 57.895 0.00 0.00 0.00 3.66
2749 4385 1.855441 ATGCCATGCCAGGACAGTGA 61.855 55.000 0.00 0.00 0.00 3.41
2750 4386 1.748122 GCCATGCCAGGACAGTGAG 60.748 63.158 0.00 0.00 0.00 3.51
2751 4387 1.748122 CCATGCCAGGACAGTGAGC 60.748 63.158 0.00 0.00 0.00 4.26
2752 4388 1.298993 CATGCCAGGACAGTGAGCT 59.701 57.895 0.00 0.00 0.00 4.09
2753 4389 0.743701 CATGCCAGGACAGTGAGCTC 60.744 60.000 6.82 6.82 0.00 4.09
2754 4390 0.908656 ATGCCAGGACAGTGAGCTCT 60.909 55.000 16.19 0.00 0.00 4.09
2755 4391 1.123861 TGCCAGGACAGTGAGCTCTT 61.124 55.000 16.19 0.00 0.00 2.85
2756 4392 0.390998 GCCAGGACAGTGAGCTCTTC 60.391 60.000 16.19 8.27 0.00 2.87
2757 4393 1.265236 CCAGGACAGTGAGCTCTTCT 58.735 55.000 16.19 10.50 0.00 2.85
2758 4394 1.204467 CCAGGACAGTGAGCTCTTCTC 59.796 57.143 16.19 4.17 42.23 2.87
2759 4395 1.135431 CAGGACAGTGAGCTCTTCTCG 60.135 57.143 16.19 10.21 44.86 4.04
2764 4400 3.505808 GTGAGCTCTTCTCGCTGTT 57.494 52.632 16.19 0.00 46.22 3.16
2765 4401 1.789506 GTGAGCTCTTCTCGCTGTTT 58.210 50.000 16.19 0.00 46.22 2.83
2766 4402 2.139118 GTGAGCTCTTCTCGCTGTTTT 58.861 47.619 16.19 0.00 46.22 2.43
2767 4403 2.156697 GTGAGCTCTTCTCGCTGTTTTC 59.843 50.000 16.19 0.00 46.22 2.29
2768 4404 1.729517 GAGCTCTTCTCGCTGTTTTCC 59.270 52.381 6.43 0.00 37.96 3.13
2769 4405 1.070758 AGCTCTTCTCGCTGTTTTCCA 59.929 47.619 0.00 0.00 36.15 3.53
2770 4406 1.873591 GCTCTTCTCGCTGTTTTCCAA 59.126 47.619 0.00 0.00 0.00 3.53
2771 4407 2.349912 GCTCTTCTCGCTGTTTTCCAAC 60.350 50.000 0.00 0.00 0.00 3.77
2772 4408 2.218603 TCTTCTCGCTGTTTTCCAACC 58.781 47.619 0.00 0.00 31.02 3.77
2773 4409 1.946768 CTTCTCGCTGTTTTCCAACCA 59.053 47.619 0.00 0.00 31.02 3.67
2774 4410 1.593196 TCTCGCTGTTTTCCAACCAG 58.407 50.000 0.00 0.00 31.02 4.00
2775 4411 0.593128 CTCGCTGTTTTCCAACCAGG 59.407 55.000 0.00 0.00 39.47 4.45
2776 4412 1.007387 CGCTGTTTTCCAACCAGGC 60.007 57.895 0.00 0.00 37.29 4.85
2777 4413 1.007387 GCTGTTTTCCAACCAGGCG 60.007 57.895 0.00 0.00 37.29 5.52
2778 4414 1.007387 CTGTTTTCCAACCAGGCGC 60.007 57.895 0.00 0.00 37.29 6.53
2779 4415 2.050442 GTTTTCCAACCAGGCGCG 60.050 61.111 0.00 0.00 37.29 6.86
2780 4416 3.291383 TTTTCCAACCAGGCGCGG 61.291 61.111 8.83 0.00 37.29 6.46
2793 4429 3.943034 CGCGGCGGTTTGACAACA 61.943 61.111 15.84 0.00 34.15 3.33
2794 4430 2.409651 GCGGCGGTTTGACAACAA 59.590 55.556 9.78 0.00 34.15 2.83
2795 4431 1.942223 GCGGCGGTTTGACAACAAC 60.942 57.895 9.78 0.00 35.63 3.32
2796 4432 1.725066 CGGCGGTTTGACAACAACT 59.275 52.632 0.00 0.00 35.63 3.16
2797 4433 0.938713 CGGCGGTTTGACAACAACTA 59.061 50.000 0.00 0.00 35.63 2.24
2798 4434 1.333435 CGGCGGTTTGACAACAACTAC 60.333 52.381 0.00 0.00 35.63 2.73
2799 4435 1.671845 GGCGGTTTGACAACAACTACA 59.328 47.619 0.00 0.00 35.63 2.74
2800 4436 2.097791 GGCGGTTTGACAACAACTACAA 59.902 45.455 0.00 0.00 35.63 2.41
2801 4437 3.103007 GCGGTTTGACAACAACTACAAC 58.897 45.455 0.00 0.00 35.63 3.32
2802 4438 3.426426 GCGGTTTGACAACAACTACAACA 60.426 43.478 0.00 0.00 35.63 3.33
2803 4439 4.724303 CGGTTTGACAACAACTACAACAA 58.276 39.130 0.00 0.00 35.63 2.83
2804 4440 4.555747 CGGTTTGACAACAACTACAACAAC 59.444 41.667 0.00 0.00 35.63 3.32
2805 4441 5.462405 GGTTTGACAACAACTACAACAACA 58.538 37.500 0.00 0.00 35.63 3.33
2806 4442 5.921408 GGTTTGACAACAACTACAACAACAA 59.079 36.000 0.00 0.00 35.63 2.83
2807 4443 6.588373 GGTTTGACAACAACTACAACAACAAT 59.412 34.615 0.00 0.00 35.63 2.71
2808 4444 7.755822 GGTTTGACAACAACTACAACAACAATA 59.244 33.333 0.00 0.00 35.63 1.90
2809 4445 9.130312 GTTTGACAACAACTACAACAACAATAA 57.870 29.630 0.00 0.00 35.63 1.40
2810 4446 9.692749 TTTGACAACAACTACAACAACAATAAA 57.307 25.926 0.00 0.00 35.63 1.40
2811 4447 8.903570 TGACAACAACTACAACAACAATAAAG 57.096 30.769 0.00 0.00 0.00 1.85
2812 4448 8.731605 TGACAACAACTACAACAACAATAAAGA 58.268 29.630 0.00 0.00 0.00 2.52
2813 4449 9.562583 GACAACAACTACAACAACAATAAAGAA 57.437 29.630 0.00 0.00 0.00 2.52
2814 4450 9.349145 ACAACAACTACAACAACAATAAAGAAC 57.651 29.630 0.00 0.00 0.00 3.01
2815 4451 9.347934 CAACAACTACAACAACAATAAAGAACA 57.652 29.630 0.00 0.00 0.00 3.18
2816 4452 9.567848 AACAACTACAACAACAATAAAGAACAG 57.432 29.630 0.00 0.00 0.00 3.16
2817 4453 8.188139 ACAACTACAACAACAATAAAGAACAGG 58.812 33.333 0.00 0.00 0.00 4.00
2818 4454 7.272037 ACTACAACAACAATAAAGAACAGGG 57.728 36.000 0.00 0.00 0.00 4.45
2819 4455 7.057894 ACTACAACAACAATAAAGAACAGGGA 58.942 34.615 0.00 0.00 0.00 4.20
2820 4456 6.783708 ACAACAACAATAAAGAACAGGGAA 57.216 33.333 0.00 0.00 0.00 3.97
2821 4457 6.569780 ACAACAACAATAAAGAACAGGGAAC 58.430 36.000 0.00 0.00 0.00 3.62
2822 4458 5.432885 ACAACAATAAAGAACAGGGAACG 57.567 39.130 0.00 0.00 0.00 3.95
2823 4459 4.277423 ACAACAATAAAGAACAGGGAACGG 59.723 41.667 0.00 0.00 0.00 4.44
2824 4460 2.817844 ACAATAAAGAACAGGGAACGGC 59.182 45.455 0.00 0.00 0.00 5.68
2825 4461 2.817258 CAATAAAGAACAGGGAACGGCA 59.183 45.455 0.00 0.00 0.00 5.69
2826 4462 2.178912 TAAAGAACAGGGAACGGCAG 57.821 50.000 0.00 0.00 0.00 4.85
2827 4463 0.537371 AAAGAACAGGGAACGGCAGG 60.537 55.000 0.00 0.00 0.00 4.85
2828 4464 1.705997 AAGAACAGGGAACGGCAGGT 61.706 55.000 0.00 0.00 0.00 4.00
2829 4465 1.966451 GAACAGGGAACGGCAGGTG 60.966 63.158 0.00 0.00 0.00 4.00
2830 4466 4.643387 ACAGGGAACGGCAGGTGC 62.643 66.667 0.00 0.00 41.14 5.01
2831 4467 4.641645 CAGGGAACGGCAGGTGCA 62.642 66.667 4.01 0.00 44.36 4.57
2832 4468 4.643387 AGGGAACGGCAGGTGCAC 62.643 66.667 8.80 8.80 44.36 4.57
2844 4480 3.640000 GTGCACGCACGCAGTCTT 61.640 61.111 6.38 0.00 44.05 3.01
2845 4481 2.894879 TGCACGCACGCAGTCTTT 60.895 55.556 0.00 0.00 41.61 2.52
2846 4482 2.425773 GCACGCACGCAGTCTTTG 60.426 61.111 0.00 0.00 41.61 2.77
2847 4483 2.881266 GCACGCACGCAGTCTTTGA 61.881 57.895 0.00 0.00 41.61 2.69
2848 4484 1.641140 CACGCACGCAGTCTTTGAA 59.359 52.632 0.00 0.00 41.61 2.69
2849 4485 0.027455 CACGCACGCAGTCTTTGAAA 59.973 50.000 0.00 0.00 41.61 2.69
2850 4486 0.730265 ACGCACGCAGTCTTTGAAAA 59.270 45.000 0.00 0.00 41.61 2.29
2851 4487 1.131504 ACGCACGCAGTCTTTGAAAAA 59.868 42.857 0.00 0.00 41.61 1.94
2852 4488 2.223479 ACGCACGCAGTCTTTGAAAAAT 60.223 40.909 0.00 0.00 41.61 1.82
2853 4489 3.002862 ACGCACGCAGTCTTTGAAAAATA 59.997 39.130 0.00 0.00 41.61 1.40
2854 4490 3.971871 CGCACGCAGTCTTTGAAAAATAA 59.028 39.130 0.00 0.00 41.61 1.40
2855 4491 4.087085 CGCACGCAGTCTTTGAAAAATAAG 59.913 41.667 0.00 0.00 41.61 1.73
2856 4492 4.143535 GCACGCAGTCTTTGAAAAATAAGC 60.144 41.667 0.00 0.00 41.61 3.09
2857 4493 4.975502 CACGCAGTCTTTGAAAAATAAGCA 59.024 37.500 0.00 0.00 41.61 3.91
2858 4494 5.116074 CACGCAGTCTTTGAAAAATAAGCAG 59.884 40.000 0.00 0.00 41.61 4.24
2859 4495 4.089065 CGCAGTCTTTGAAAAATAAGCAGC 59.911 41.667 0.00 0.00 0.00 5.25
2860 4496 4.984161 GCAGTCTTTGAAAAATAAGCAGCA 59.016 37.500 0.00 0.00 0.00 4.41
2861 4497 5.118203 GCAGTCTTTGAAAAATAAGCAGCAG 59.882 40.000 0.00 0.00 0.00 4.24
2862 4498 5.118203 CAGTCTTTGAAAAATAAGCAGCAGC 59.882 40.000 0.00 0.00 42.56 5.25
2872 4508 3.272031 GCAGCAGCTGGTTTCCTC 58.728 61.111 24.13 1.20 37.91 3.71
2873 4509 1.601759 GCAGCAGCTGGTTTCCTCA 60.602 57.895 24.13 0.00 37.91 3.86
2874 4510 1.174712 GCAGCAGCTGGTTTCCTCAA 61.175 55.000 24.13 0.00 37.91 3.02
2875 4511 0.879765 CAGCAGCTGGTTTCCTCAAG 59.120 55.000 17.45 0.00 0.00 3.02
2876 4512 0.475906 AGCAGCTGGTTTCCTCAAGT 59.524 50.000 13.85 0.00 0.00 3.16
2877 4513 0.595095 GCAGCTGGTTTCCTCAAGTG 59.405 55.000 17.12 0.00 0.00 3.16
2878 4514 1.242076 CAGCTGGTTTCCTCAAGTGG 58.758 55.000 5.57 0.00 0.00 4.00
2879 4515 0.846693 AGCTGGTTTCCTCAAGTGGT 59.153 50.000 0.00 0.00 0.00 4.16
2880 4516 1.202818 AGCTGGTTTCCTCAAGTGGTC 60.203 52.381 0.00 0.00 0.00 4.02
2881 4517 1.476833 GCTGGTTTCCTCAAGTGGTCA 60.477 52.381 0.00 0.00 0.00 4.02
2882 4518 2.498167 CTGGTTTCCTCAAGTGGTCAG 58.502 52.381 0.00 0.00 0.00 3.51
2883 4519 2.104792 CTGGTTTCCTCAAGTGGTCAGA 59.895 50.000 0.00 0.00 0.00 3.27
2884 4520 2.104792 TGGTTTCCTCAAGTGGTCAGAG 59.895 50.000 0.00 0.00 0.00 3.35
2886 4522 0.687354 TTCCTCAAGTGGTCAGAGGC 59.313 55.000 0.00 0.00 46.71 4.70
2887 4523 1.194781 TCCTCAAGTGGTCAGAGGCC 61.195 60.000 0.00 0.00 46.71 5.19
2888 4524 1.197430 CCTCAAGTGGTCAGAGGCCT 61.197 60.000 3.86 3.86 42.13 5.19
2889 4525 0.248843 CTCAAGTGGTCAGAGGCCTC 59.751 60.000 26.22 26.22 0.00 4.70
2890 4526 0.178921 TCAAGTGGTCAGAGGCCTCT 60.179 55.000 30.40 30.40 41.37 3.69
2900 4536 2.503775 GAGGCCTCTGTCTCCTCTG 58.496 63.158 26.25 0.00 42.31 3.35
2901 4537 1.675720 GAGGCCTCTGTCTCCTCTGC 61.676 65.000 26.25 0.00 42.31 4.26
2902 4538 1.685421 GGCCTCTGTCTCCTCTGCT 60.685 63.158 0.00 0.00 0.00 4.24
2903 4539 1.264045 GGCCTCTGTCTCCTCTGCTT 61.264 60.000 0.00 0.00 0.00 3.91
2904 4540 0.612744 GCCTCTGTCTCCTCTGCTTT 59.387 55.000 0.00 0.00 0.00 3.51
2905 4541 1.003003 GCCTCTGTCTCCTCTGCTTTT 59.997 52.381 0.00 0.00 0.00 2.27
2906 4542 2.697654 CCTCTGTCTCCTCTGCTTTTG 58.302 52.381 0.00 0.00 0.00 2.44
2907 4543 2.038295 CCTCTGTCTCCTCTGCTTTTGT 59.962 50.000 0.00 0.00 0.00 2.83
2908 4544 3.324993 CTCTGTCTCCTCTGCTTTTGTC 58.675 50.000 0.00 0.00 0.00 3.18
2909 4545 2.037772 TCTGTCTCCTCTGCTTTTGTCC 59.962 50.000 0.00 0.00 0.00 4.02
2910 4546 1.270305 TGTCTCCTCTGCTTTTGTCCG 60.270 52.381 0.00 0.00 0.00 4.79
2911 4547 0.321671 TCTCCTCTGCTTTTGTCCGG 59.678 55.000 0.00 0.00 0.00 5.14
2912 4548 1.301677 CTCCTCTGCTTTTGTCCGGC 61.302 60.000 0.00 0.00 0.00 6.13
2913 4549 1.302832 CCTCTGCTTTTGTCCGGCT 60.303 57.895 0.00 0.00 0.00 5.52
2914 4550 1.301677 CCTCTGCTTTTGTCCGGCTC 61.302 60.000 0.00 0.00 0.00 4.70
2915 4551 0.603707 CTCTGCTTTTGTCCGGCTCA 60.604 55.000 0.00 0.00 0.00 4.26
2916 4552 0.603707 TCTGCTTTTGTCCGGCTCAG 60.604 55.000 0.00 0.00 0.00 3.35
2917 4553 2.192608 CTGCTTTTGTCCGGCTCAGC 62.193 60.000 0.00 0.00 0.00 4.26
2918 4554 2.982744 GCTTTTGTCCGGCTCAGCC 61.983 63.158 5.22 5.22 46.75 4.85
2927 4563 2.759795 GGCTCAGCCCTTTGACCT 59.240 61.111 3.37 0.00 44.06 3.85
2928 4564 1.075659 GGCTCAGCCCTTTGACCTT 59.924 57.895 3.37 0.00 44.06 3.50
2929 4565 0.962855 GGCTCAGCCCTTTGACCTTC 60.963 60.000 3.37 0.00 44.06 3.46
2930 4566 0.250901 GCTCAGCCCTTTGACCTTCA 60.251 55.000 0.00 0.00 0.00 3.02
2931 4567 1.615384 GCTCAGCCCTTTGACCTTCAT 60.615 52.381 0.00 0.00 0.00 2.57
2932 4568 2.363683 CTCAGCCCTTTGACCTTCATC 58.636 52.381 0.00 0.00 0.00 2.92
2933 4569 1.704628 TCAGCCCTTTGACCTTCATCA 59.295 47.619 0.00 0.00 0.00 3.07
2934 4570 1.815003 CAGCCCTTTGACCTTCATCAC 59.185 52.381 0.00 0.00 0.00 3.06
2935 4571 1.425066 AGCCCTTTGACCTTCATCACA 59.575 47.619 0.00 0.00 0.00 3.58
2936 4572 1.815003 GCCCTTTGACCTTCATCACAG 59.185 52.381 0.00 0.00 0.00 3.66
2937 4573 1.815003 CCCTTTGACCTTCATCACAGC 59.185 52.381 0.00 0.00 0.00 4.40
2938 4574 2.507484 CCTTTGACCTTCATCACAGCA 58.493 47.619 0.00 0.00 0.00 4.41
2939 4575 2.486982 CCTTTGACCTTCATCACAGCAG 59.513 50.000 0.00 0.00 0.00 4.24
2940 4576 1.527034 TTGACCTTCATCACAGCAGC 58.473 50.000 0.00 0.00 0.00 5.25
2941 4577 0.321919 TGACCTTCATCACAGCAGCC 60.322 55.000 0.00 0.00 0.00 4.85
2942 4578 0.321919 GACCTTCATCACAGCAGCCA 60.322 55.000 0.00 0.00 0.00 4.75
2943 4579 0.607489 ACCTTCATCACAGCAGCCAC 60.607 55.000 0.00 0.00 0.00 5.01
2944 4580 0.607217 CCTTCATCACAGCAGCCACA 60.607 55.000 0.00 0.00 0.00 4.17
2945 4581 0.803117 CTTCATCACAGCAGCCACAG 59.197 55.000 0.00 0.00 0.00 3.66
2946 4582 0.607217 TTCATCACAGCAGCCACAGG 60.607 55.000 0.00 0.00 0.00 4.00
2970 4606 4.183686 CGGCCGGCAGAGCAAATG 62.184 66.667 30.85 1.52 0.00 2.32
2971 4607 3.064324 GGCCGGCAGAGCAAATGT 61.064 61.111 30.85 0.00 0.00 2.71
2972 4608 1.748879 GGCCGGCAGAGCAAATGTA 60.749 57.895 30.85 0.00 0.00 2.29
2973 4609 1.718757 GGCCGGCAGAGCAAATGTAG 61.719 60.000 30.85 0.00 0.00 2.74
2974 4610 1.723870 CCGGCAGAGCAAATGTAGC 59.276 57.895 0.00 0.00 0.00 3.58
2975 4611 0.745845 CCGGCAGAGCAAATGTAGCT 60.746 55.000 0.00 0.00 46.82 3.32
2976 4612 1.089920 CGGCAGAGCAAATGTAGCTT 58.910 50.000 0.00 0.00 43.58 3.74
2977 4613 1.470098 CGGCAGAGCAAATGTAGCTTT 59.530 47.619 0.00 0.00 43.58 3.51
2978 4614 2.677836 CGGCAGAGCAAATGTAGCTTTA 59.322 45.455 0.00 0.00 43.58 1.85
2979 4615 3.485877 CGGCAGAGCAAATGTAGCTTTAC 60.486 47.826 0.00 0.00 43.58 2.01
2980 4616 3.485877 GGCAGAGCAAATGTAGCTTTACG 60.486 47.826 0.00 0.00 43.58 3.18
2981 4617 3.370978 GCAGAGCAAATGTAGCTTTACGA 59.629 43.478 0.00 0.00 43.58 3.43
2982 4618 4.725169 GCAGAGCAAATGTAGCTTTACGAC 60.725 45.833 0.00 0.00 43.58 4.34
2983 4619 3.612860 AGAGCAAATGTAGCTTTACGACG 59.387 43.478 0.00 0.00 43.58 5.12
2984 4620 2.093783 AGCAAATGTAGCTTTACGACGC 59.906 45.455 0.00 0.00 39.87 5.19
2985 4621 2.786700 GCAAATGTAGCTTTACGACGCC 60.787 50.000 0.00 0.00 0.00 5.68
2986 4622 2.373540 AATGTAGCTTTACGACGCCA 57.626 45.000 0.00 0.00 0.00 5.69
2987 4623 2.596904 ATGTAGCTTTACGACGCCAT 57.403 45.000 0.00 0.00 0.00 4.40
2988 4624 1.917273 TGTAGCTTTACGACGCCATC 58.083 50.000 0.00 0.00 0.00 3.51
2989 4625 1.202817 TGTAGCTTTACGACGCCATCA 59.797 47.619 0.00 0.00 0.00 3.07
2990 4626 1.852895 GTAGCTTTACGACGCCATCAG 59.147 52.381 0.00 0.00 0.00 2.90
2991 4627 0.246635 AGCTTTACGACGCCATCAGT 59.753 50.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.681327 CGGGGAGGAACGAGAGGAA 60.681 63.158 0.00 0.00 0.00 3.36
174 175 1.452651 CTTGATGGCTGCGTCCCAT 60.453 57.895 2.61 2.61 45.47 4.00
175 176 2.046023 CTTGATGGCTGCGTCCCA 60.046 61.111 0.00 0.00 36.66 4.37
274 275 1.667830 CGGTCAGCCACGACATGTT 60.668 57.895 0.00 0.00 37.66 2.71
345 346 2.358615 TTGTTCATCAGCGCGCCT 60.359 55.556 30.33 12.83 0.00 5.52
575 583 6.594788 TTGTAGAAAGGGTACAACTCGTAT 57.405 37.500 0.00 0.00 35.84 3.06
652 660 2.954753 GACTGGTCGCTGCCGTTTG 61.955 63.158 0.00 0.00 35.54 2.93
673 681 1.842381 GCCTCAAGTGCCAGTAGGGT 61.842 60.000 0.00 0.00 39.65 4.34
766 842 5.747197 GTCTCAACTTTCAACTCACTACGAA 59.253 40.000 0.00 0.00 0.00 3.85
767 843 5.163591 TGTCTCAACTTTCAACTCACTACGA 60.164 40.000 0.00 0.00 0.00 3.43
768 844 5.041287 TGTCTCAACTTTCAACTCACTACG 58.959 41.667 0.00 0.00 0.00 3.51
773 849 2.866156 CGCTGTCTCAACTTTCAACTCA 59.134 45.455 0.00 0.00 0.00 3.41
786 862 3.437395 TCTTCTAGTTCAGTCGCTGTCTC 59.563 47.826 6.72 0.86 32.61 3.36
928 1137 1.451207 AGCACCAACAGCACGACAA 60.451 52.632 0.00 0.00 0.00 3.18
1005 1214 0.538746 TCACCCGCGCTGGATATCTA 60.539 55.000 25.71 0.00 42.00 1.98
1144 1367 2.548464 AGAGACTCTGAGCTTCCCAT 57.452 50.000 3.56 0.00 0.00 4.00
1196 1419 8.345565 GCTTATTTTCTTCAGAGAAGTTGTCAA 58.654 33.333 2.50 0.00 42.55 3.18
1284 1507 3.118992 GGAAAATCAATTGGAGAGTGGGC 60.119 47.826 5.42 0.00 0.00 5.36
1285 1508 4.088634 TGGAAAATCAATTGGAGAGTGGG 58.911 43.478 5.42 0.00 0.00 4.61
1333 1561 0.160813 CACGTCATGTCGAAACCACG 59.839 55.000 19.02 8.45 34.70 4.94
1339 1567 1.222300 CCAAACCACGTCATGTCGAA 58.778 50.000 19.02 0.00 34.70 3.71
1340 1568 0.105224 ACCAAACCACGTCATGTCGA 59.895 50.000 19.02 0.00 34.70 4.20
1341 1569 0.511221 GACCAAACCACGTCATGTCG 59.489 55.000 10.83 10.83 0.00 4.35
1342 1570 0.511221 CGACCAAACCACGTCATGTC 59.489 55.000 0.00 0.00 0.00 3.06
1343 1571 0.882927 CCGACCAAACCACGTCATGT 60.883 55.000 0.00 0.00 0.00 3.21
1344 1572 0.882927 ACCGACCAAACCACGTCATG 60.883 55.000 0.00 0.00 0.00 3.07
1345 1573 0.601841 GACCGACCAAACCACGTCAT 60.602 55.000 0.00 0.00 0.00 3.06
1346 1574 1.227321 GACCGACCAAACCACGTCA 60.227 57.895 0.00 0.00 0.00 4.35
1347 1575 1.219522 CTGACCGACCAAACCACGTC 61.220 60.000 0.00 0.00 0.00 4.34
1348 1576 1.227438 CTGACCGACCAAACCACGT 60.227 57.895 0.00 0.00 0.00 4.49
1349 1577 1.959226 CCTGACCGACCAAACCACG 60.959 63.158 0.00 0.00 0.00 4.94
1644 1887 2.930040 CGCACATTGGTAAGGAGTACAG 59.070 50.000 0.00 0.00 34.01 2.74
1645 1888 2.300723 ACGCACATTGGTAAGGAGTACA 59.699 45.455 0.00 0.00 34.01 2.90
1646 1889 2.671396 CACGCACATTGGTAAGGAGTAC 59.329 50.000 0.00 0.00 0.00 2.73
1780 2058 1.273606 ACTGAACTGAGCTATGCACGT 59.726 47.619 0.00 0.00 0.00 4.49
1787 2065 1.819288 CCCTCGAACTGAACTGAGCTA 59.181 52.381 0.00 0.00 0.00 3.32
1889 2176 1.288127 GCGGTGGTAGACGACAACT 59.712 57.895 0.00 0.00 31.85 3.16
1991 2279 8.336235 TCCCAAAACTGATCCATAATAAGAAGT 58.664 33.333 0.00 0.00 0.00 3.01
1994 2282 9.135189 CATTCCCAAAACTGATCCATAATAAGA 57.865 33.333 0.00 0.00 0.00 2.10
2096 2433 6.144080 ACGAGAAACGATAAGACTTGACAAAG 59.856 38.462 0.00 0.00 45.77 2.77
2164 2503 7.172190 TGAACCGTACAATCCGTTATTTTACAA 59.828 33.333 0.00 0.00 32.49 2.41
2195 2534 6.206634 TCACCTTTGACAACTGGCTAAATTAG 59.793 38.462 6.38 0.00 0.00 1.73
2198 2537 4.469657 TCACCTTTGACAACTGGCTAAAT 58.530 39.130 6.38 0.00 0.00 1.40
2333 2679 6.015519 TGGACTGGAAATTTCAACATCGATTT 60.016 34.615 19.49 0.00 0.00 2.17
2334 2680 5.476599 TGGACTGGAAATTTCAACATCGATT 59.523 36.000 19.49 0.00 0.00 3.34
2338 2684 5.221422 TGGTTGGACTGGAAATTTCAACATC 60.221 40.000 19.49 10.55 36.99 3.06
2342 2688 4.099266 CAGTGGTTGGACTGGAAATTTCAA 59.901 41.667 19.49 7.84 39.85 2.69
2356 2702 1.156736 GGTGAACGATCAGTGGTTGG 58.843 55.000 0.00 0.00 35.88 3.77
2358 2704 1.056660 AGGGTGAACGATCAGTGGTT 58.943 50.000 0.00 0.00 35.88 3.67
2368 4004 3.179265 CGCGCTACAGGGTGAACG 61.179 66.667 5.56 0.00 40.38 3.95
2376 4012 2.793232 GTCTAATTAACCCGCGCTACAG 59.207 50.000 5.56 0.00 0.00 2.74
2451 4087 3.716006 CGTGACAAGTGGCAGCCG 61.716 66.667 7.03 0.00 30.83 5.52
2501 4137 4.574421 TCCATCATACCGTAACTTGCATTG 59.426 41.667 0.00 0.00 0.00 2.82
2512 4148 3.281727 AATGCAACTCCATCATACCGT 57.718 42.857 0.00 0.00 0.00 4.83
2513 4149 4.637483 AAAATGCAACTCCATCATACCG 57.363 40.909 0.00 0.00 0.00 4.02
2520 4156 5.990996 CCAAACTTGTAAAATGCAACTCCAT 59.009 36.000 0.00 0.00 0.00 3.41
2563 4199 1.065418 CCAGGTACCCTAACTTGCAGG 60.065 57.143 8.74 0.00 29.64 4.85
2598 4234 4.379918 GGCAGCTGAGACCAAATTAGTTTC 60.380 45.833 20.43 0.00 0.00 2.78
2603 4239 1.003118 ACGGCAGCTGAGACCAAATTA 59.997 47.619 20.43 0.00 0.00 1.40
2604 4240 0.250901 ACGGCAGCTGAGACCAAATT 60.251 50.000 20.43 0.00 0.00 1.82
2605 4241 0.674895 GACGGCAGCTGAGACCAAAT 60.675 55.000 20.43 0.00 0.00 2.32
2606 4242 1.301716 GACGGCAGCTGAGACCAAA 60.302 57.895 20.43 0.00 0.00 3.28
2607 4243 2.343758 GACGGCAGCTGAGACCAA 59.656 61.111 20.43 0.00 0.00 3.67
2608 4244 3.695606 GGACGGCAGCTGAGACCA 61.696 66.667 20.43 0.00 0.00 4.02
2609 4245 3.655810 CTGGACGGCAGCTGAGACC 62.656 68.421 20.43 19.32 0.00 3.85
2610 4246 2.125753 CTGGACGGCAGCTGAGAC 60.126 66.667 20.43 10.58 0.00 3.36
2611 4247 4.074526 GCTGGACGGCAGCTGAGA 62.075 66.667 20.43 0.00 42.05 3.27
2616 4252 2.510238 CTGTAGCTGGACGGCAGC 60.510 66.667 5.85 4.72 45.38 5.25
2617 4253 1.446792 CACTGTAGCTGGACGGCAG 60.447 63.158 5.85 0.00 34.17 4.85
2618 4254 2.154798 GACACTGTAGCTGGACGGCA 62.155 60.000 5.85 0.00 34.17 5.69
2619 4255 1.446272 GACACTGTAGCTGGACGGC 60.446 63.158 0.00 0.00 0.00 5.68
2620 4256 1.132643 GTAGACACTGTAGCTGGACGG 59.867 57.143 0.00 0.00 0.00 4.79
2621 4257 1.202043 CGTAGACACTGTAGCTGGACG 60.202 57.143 0.00 0.00 0.00 4.79
2622 4258 1.811359 ACGTAGACACTGTAGCTGGAC 59.189 52.381 0.00 0.00 0.00 4.02
2623 4259 2.195741 ACGTAGACACTGTAGCTGGA 57.804 50.000 0.00 0.00 0.00 3.86
2624 4260 3.008330 AGTACGTAGACACTGTAGCTGG 58.992 50.000 0.00 0.00 0.00 4.85
2625 4261 4.004772 CAGTACGTAGACACTGTAGCTG 57.995 50.000 7.84 0.00 38.55 4.24
2631 4267 3.617706 AGATCGACAGTACGTAGACACTG 59.382 47.826 13.37 13.37 44.87 3.66
2632 4268 3.617706 CAGATCGACAGTACGTAGACACT 59.382 47.826 0.00 0.00 31.52 3.55
2633 4269 3.242349 CCAGATCGACAGTACGTAGACAC 60.242 52.174 0.00 0.00 31.52 3.67
2634 4270 2.934553 CCAGATCGACAGTACGTAGACA 59.065 50.000 0.00 0.00 31.52 3.41
2635 4271 2.935201 ACCAGATCGACAGTACGTAGAC 59.065 50.000 0.00 0.00 31.52 2.59
2636 4272 2.934553 CACCAGATCGACAGTACGTAGA 59.065 50.000 0.00 3.96 33.44 2.59
2637 4273 2.031807 CCACCAGATCGACAGTACGTAG 59.968 54.545 0.00 0.00 34.70 3.51
2638 4274 2.011947 CCACCAGATCGACAGTACGTA 58.988 52.381 0.00 0.00 34.70 3.57
2639 4275 0.809385 CCACCAGATCGACAGTACGT 59.191 55.000 0.00 0.00 34.70 3.57
2640 4276 1.092348 TCCACCAGATCGACAGTACG 58.908 55.000 0.00 0.00 0.00 3.67
2641 4277 3.130516 TGAATCCACCAGATCGACAGTAC 59.869 47.826 0.00 0.00 32.47 2.73
2642 4278 3.361786 TGAATCCACCAGATCGACAGTA 58.638 45.455 0.00 0.00 32.47 2.74
2643 4279 2.179427 TGAATCCACCAGATCGACAGT 58.821 47.619 0.00 0.00 32.47 3.55
2644 4280 2.967599 TGAATCCACCAGATCGACAG 57.032 50.000 0.00 0.00 32.47 3.51
2645 4281 2.093500 CCTTGAATCCACCAGATCGACA 60.093 50.000 0.00 0.00 32.47 4.35
2646 4282 2.555199 CCTTGAATCCACCAGATCGAC 58.445 52.381 0.00 0.00 32.47 4.20
2647 4283 1.134401 GCCTTGAATCCACCAGATCGA 60.134 52.381 0.00 0.00 32.47 3.59
2648 4284 1.134280 AGCCTTGAATCCACCAGATCG 60.134 52.381 0.00 0.00 32.47 3.69
2649 4285 2.295885 CAGCCTTGAATCCACCAGATC 58.704 52.381 0.00 0.00 32.47 2.75
2650 4286 1.064166 CCAGCCTTGAATCCACCAGAT 60.064 52.381 0.00 0.00 36.48 2.90
2651 4287 0.329261 CCAGCCTTGAATCCACCAGA 59.671 55.000 0.00 0.00 0.00 3.86
2652 4288 0.329261 TCCAGCCTTGAATCCACCAG 59.671 55.000 0.00 0.00 0.00 4.00
2653 4289 0.329261 CTCCAGCCTTGAATCCACCA 59.671 55.000 0.00 0.00 0.00 4.17
2654 4290 1.034292 GCTCCAGCCTTGAATCCACC 61.034 60.000 0.00 0.00 34.31 4.61
2655 4291 0.034670 AGCTCCAGCCTTGAATCCAC 60.035 55.000 0.00 0.00 43.38 4.02
2656 4292 0.700564 AAGCTCCAGCCTTGAATCCA 59.299 50.000 0.00 0.00 43.38 3.41
2657 4293 1.340405 TGAAGCTCCAGCCTTGAATCC 60.340 52.381 0.00 0.00 43.38 3.01
2658 4294 2.119801 TGAAGCTCCAGCCTTGAATC 57.880 50.000 0.00 0.00 43.38 2.52
2659 4295 2.025605 TGATGAAGCTCCAGCCTTGAAT 60.026 45.455 0.00 0.00 43.38 2.57
2660 4296 1.352017 TGATGAAGCTCCAGCCTTGAA 59.648 47.619 0.00 0.00 43.38 2.69
2661 4297 0.986527 TGATGAAGCTCCAGCCTTGA 59.013 50.000 0.00 0.00 43.38 3.02
2662 4298 2.054232 ATGATGAAGCTCCAGCCTTG 57.946 50.000 0.00 0.00 43.38 3.61
2663 4299 2.822707 AATGATGAAGCTCCAGCCTT 57.177 45.000 0.00 0.00 43.38 4.35
2664 4300 2.025605 TGAAATGATGAAGCTCCAGCCT 60.026 45.455 0.00 0.00 43.38 4.58
2665 4301 2.358267 CTGAAATGATGAAGCTCCAGCC 59.642 50.000 0.00 0.00 43.38 4.85
2666 4302 2.358267 CCTGAAATGATGAAGCTCCAGC 59.642 50.000 0.00 0.00 42.49 4.85
2667 4303 2.358267 GCCTGAAATGATGAAGCTCCAG 59.642 50.000 0.00 0.00 0.00 3.86
2668 4304 2.372264 GCCTGAAATGATGAAGCTCCA 58.628 47.619 0.00 0.00 0.00 3.86
2669 4305 1.680207 GGCCTGAAATGATGAAGCTCC 59.320 52.381 0.00 0.00 0.00 4.70
2670 4306 2.358267 CAGGCCTGAAATGATGAAGCTC 59.642 50.000 29.88 0.00 0.00 4.09
2671 4307 2.025605 TCAGGCCTGAAATGATGAAGCT 60.026 45.455 33.41 0.00 36.53 3.74
2672 4308 2.372264 TCAGGCCTGAAATGATGAAGC 58.628 47.619 33.41 0.00 36.53 3.86
2683 4319 2.899256 CCTTTTCCAAATTCAGGCCTGA 59.101 45.455 32.00 32.00 37.91 3.86
2684 4320 2.613725 GCCTTTTCCAAATTCAGGCCTG 60.614 50.000 27.87 27.87 43.78 4.85
2685 4321 1.625315 GCCTTTTCCAAATTCAGGCCT 59.375 47.619 0.00 0.00 43.78 5.19
2686 4322 2.099141 GCCTTTTCCAAATTCAGGCC 57.901 50.000 0.00 0.00 43.78 5.19
2688 4324 1.672737 GCGGCCTTTTCCAAATTCAGG 60.673 52.381 0.00 0.00 0.00 3.86
2689 4325 1.273327 AGCGGCCTTTTCCAAATTCAG 59.727 47.619 0.00 0.00 0.00 3.02
2690 4326 1.000731 CAGCGGCCTTTTCCAAATTCA 59.999 47.619 0.00 0.00 0.00 2.57
2691 4327 1.272212 TCAGCGGCCTTTTCCAAATTC 59.728 47.619 0.00 0.00 0.00 2.17
2692 4328 1.337118 TCAGCGGCCTTTTCCAAATT 58.663 45.000 0.00 0.00 0.00 1.82
2693 4329 1.337118 TTCAGCGGCCTTTTCCAAAT 58.663 45.000 0.00 0.00 0.00 2.32
2694 4330 1.000731 CATTCAGCGGCCTTTTCCAAA 59.999 47.619 0.00 0.00 0.00 3.28
2695 4331 0.602562 CATTCAGCGGCCTTTTCCAA 59.397 50.000 0.00 0.00 0.00 3.53
2696 4332 0.251121 TCATTCAGCGGCCTTTTCCA 60.251 50.000 0.00 0.00 0.00 3.53
2697 4333 0.453390 CTCATTCAGCGGCCTTTTCC 59.547 55.000 0.00 0.00 0.00 3.13
2698 4334 1.453155 TCTCATTCAGCGGCCTTTTC 58.547 50.000 0.00 0.00 0.00 2.29
2699 4335 1.815003 CTTCTCATTCAGCGGCCTTTT 59.185 47.619 0.00 0.00 0.00 2.27
2700 4336 1.271597 ACTTCTCATTCAGCGGCCTTT 60.272 47.619 0.00 0.00 0.00 3.11
2701 4337 0.326264 ACTTCTCATTCAGCGGCCTT 59.674 50.000 0.00 0.00 0.00 4.35
2702 4338 1.195115 TACTTCTCATTCAGCGGCCT 58.805 50.000 0.00 0.00 0.00 5.19
2703 4339 2.139118 GATACTTCTCATTCAGCGGCC 58.861 52.381 0.00 0.00 0.00 6.13
2704 4340 1.789464 CGATACTTCTCATTCAGCGGC 59.211 52.381 0.00 0.00 0.00 6.53
2705 4341 3.085443 ACGATACTTCTCATTCAGCGG 57.915 47.619 0.00 0.00 0.00 5.52
2706 4342 3.302092 GCAACGATACTTCTCATTCAGCG 60.302 47.826 0.00 0.00 0.00 5.18
2707 4343 3.001736 GGCAACGATACTTCTCATTCAGC 59.998 47.826 0.00 0.00 0.00 4.26
2708 4344 4.183865 TGGCAACGATACTTCTCATTCAG 58.816 43.478 0.00 0.00 42.51 3.02
2709 4345 4.200838 TGGCAACGATACTTCTCATTCA 57.799 40.909 0.00 0.00 42.51 2.57
2710 4346 4.553547 GCATGGCAACGATACTTCTCATTC 60.554 45.833 0.00 0.00 42.51 2.67
2711 4347 3.313526 GCATGGCAACGATACTTCTCATT 59.686 43.478 0.00 0.00 42.51 2.57
2712 4348 2.874701 GCATGGCAACGATACTTCTCAT 59.125 45.455 0.00 0.00 42.51 2.90
2713 4349 2.279741 GCATGGCAACGATACTTCTCA 58.720 47.619 0.00 0.00 42.51 3.27
2714 4350 1.599542 GGCATGGCAACGATACTTCTC 59.400 52.381 15.47 0.00 42.51 2.87
2715 4351 1.065491 TGGCATGGCAACGATACTTCT 60.065 47.619 21.13 0.00 42.51 2.85
2716 4352 1.378531 TGGCATGGCAACGATACTTC 58.621 50.000 21.13 0.00 42.51 3.01
2717 4353 1.677576 CATGGCATGGCAACGATACTT 59.322 47.619 27.04 3.73 42.51 2.24
2718 4354 1.311859 CATGGCATGGCAACGATACT 58.688 50.000 27.04 4.57 42.51 2.12
2719 4355 0.318107 GCATGGCATGGCAACGATAC 60.318 55.000 27.04 8.27 42.51 2.24
2720 4356 2.032170 GCATGGCATGGCAACGATA 58.968 52.632 27.04 0.86 42.51 2.92
2721 4357 2.809706 GCATGGCATGGCAACGAT 59.190 55.556 27.04 6.67 42.51 3.73
2728 4364 2.043752 TGTCCTGGCATGGCATGG 60.044 61.111 27.48 23.35 0.00 3.66
2729 4365 1.379443 ACTGTCCTGGCATGGCATG 60.379 57.895 23.59 22.99 0.00 4.06
2730 4366 1.379443 CACTGTCCTGGCATGGCAT 60.379 57.895 23.59 3.36 0.00 4.40
2731 4367 2.034532 CACTGTCCTGGCATGGCA 59.965 61.111 21.97 21.97 0.00 4.92
2732 4368 1.748122 CTCACTGTCCTGGCATGGC 60.748 63.158 13.29 13.29 0.00 4.40
2733 4369 1.748122 GCTCACTGTCCTGGCATGG 60.748 63.158 0.00 0.00 0.00 3.66
2734 4370 0.743701 GAGCTCACTGTCCTGGCATG 60.744 60.000 9.40 0.00 0.00 4.06
2735 4371 0.908656 AGAGCTCACTGTCCTGGCAT 60.909 55.000 17.77 0.00 0.00 4.40
2736 4372 1.123861 AAGAGCTCACTGTCCTGGCA 61.124 55.000 17.77 0.00 0.00 4.92
2737 4373 0.390998 GAAGAGCTCACTGTCCTGGC 60.391 60.000 17.77 0.00 0.00 4.85
2738 4374 1.204467 GAGAAGAGCTCACTGTCCTGG 59.796 57.143 17.77 0.00 43.38 4.45
2739 4375 1.135431 CGAGAAGAGCTCACTGTCCTG 60.135 57.143 17.77 0.00 44.15 3.86
2740 4376 1.173043 CGAGAAGAGCTCACTGTCCT 58.827 55.000 17.77 2.98 44.15 3.85
2741 4377 0.457681 GCGAGAAGAGCTCACTGTCC 60.458 60.000 17.77 2.75 44.15 4.02
2742 4378 0.525761 AGCGAGAAGAGCTCACTGTC 59.474 55.000 17.77 9.52 44.15 3.51
2743 4379 0.243365 CAGCGAGAAGAGCTCACTGT 59.757 55.000 17.77 0.14 44.82 3.55
2744 4380 3.033114 CAGCGAGAAGAGCTCACTG 57.967 57.895 17.77 9.17 44.62 3.66
2745 4381 0.965439 AACAGCGAGAAGAGCTCACT 59.035 50.000 17.77 14.56 44.06 3.41
2746 4382 1.789506 AAACAGCGAGAAGAGCTCAC 58.210 50.000 17.77 9.64 44.06 3.51
2747 4383 2.408050 GAAAACAGCGAGAAGAGCTCA 58.592 47.619 17.77 0.00 44.06 4.26
2748 4384 1.729517 GGAAAACAGCGAGAAGAGCTC 59.270 52.381 5.27 5.27 44.06 4.09
2750 4386 1.512926 TGGAAAACAGCGAGAAGAGC 58.487 50.000 0.00 0.00 0.00 4.09
2751 4387 2.224314 GGTTGGAAAACAGCGAGAAGAG 59.776 50.000 0.00 0.00 30.22 2.85
2752 4388 2.218603 GGTTGGAAAACAGCGAGAAGA 58.781 47.619 0.00 0.00 30.22 2.87
2753 4389 1.946768 TGGTTGGAAAACAGCGAGAAG 59.053 47.619 0.00 0.00 39.66 2.85
2754 4390 2.045561 TGGTTGGAAAACAGCGAGAA 57.954 45.000 0.00 0.00 39.66 2.87
2755 4391 3.790691 TGGTTGGAAAACAGCGAGA 57.209 47.368 0.00 0.00 39.66 4.04
2761 4397 2.840066 CGCGCCTGGTTGGAAAACA 61.840 57.895 0.00 0.00 44.52 2.83
2762 4398 2.050442 CGCGCCTGGTTGGAAAAC 60.050 61.111 0.00 0.00 38.35 2.43
2763 4399 3.291383 CCGCGCCTGGTTGGAAAA 61.291 61.111 0.00 0.00 38.35 2.29
2776 4412 3.456431 TTGTTGTCAAACCGCCGCG 62.456 57.895 5.59 5.59 35.25 6.46
2777 4413 1.942223 GTTGTTGTCAAACCGCCGC 60.942 57.895 0.00 0.00 35.25 6.53
2778 4414 0.938713 TAGTTGTTGTCAAACCGCCG 59.061 50.000 0.00 0.00 35.25 6.46
2779 4415 1.671845 TGTAGTTGTTGTCAAACCGCC 59.328 47.619 0.00 0.00 35.25 6.13
2780 4416 3.103007 GTTGTAGTTGTTGTCAAACCGC 58.897 45.455 0.00 0.00 35.25 5.68
2781 4417 4.343811 TGTTGTAGTTGTTGTCAAACCG 57.656 40.909 0.00 0.00 35.25 4.44
2782 4418 5.462405 TGTTGTTGTAGTTGTTGTCAAACC 58.538 37.500 0.00 0.00 35.25 3.27
2783 4419 6.994868 TTGTTGTTGTAGTTGTTGTCAAAC 57.005 33.333 0.00 0.00 35.20 2.93
2784 4420 9.692749 TTTATTGTTGTTGTAGTTGTTGTCAAA 57.307 25.926 0.00 0.00 35.20 2.69
2785 4421 9.347934 CTTTATTGTTGTTGTAGTTGTTGTCAA 57.652 29.630 0.00 0.00 0.00 3.18
2786 4422 8.731605 TCTTTATTGTTGTTGTAGTTGTTGTCA 58.268 29.630 0.00 0.00 0.00 3.58
2787 4423 9.562583 TTCTTTATTGTTGTTGTAGTTGTTGTC 57.437 29.630 0.00 0.00 0.00 3.18
2788 4424 9.349145 GTTCTTTATTGTTGTTGTAGTTGTTGT 57.651 29.630 0.00 0.00 0.00 3.32
2789 4425 9.347934 TGTTCTTTATTGTTGTTGTAGTTGTTG 57.652 29.630 0.00 0.00 0.00 3.33
2790 4426 9.567848 CTGTTCTTTATTGTTGTTGTAGTTGTT 57.432 29.630 0.00 0.00 0.00 2.83
2791 4427 8.188139 CCTGTTCTTTATTGTTGTTGTAGTTGT 58.812 33.333 0.00 0.00 0.00 3.32
2792 4428 7.647715 CCCTGTTCTTTATTGTTGTTGTAGTTG 59.352 37.037 0.00 0.00 0.00 3.16
2793 4429 7.558444 TCCCTGTTCTTTATTGTTGTTGTAGTT 59.442 33.333 0.00 0.00 0.00 2.24
2794 4430 7.057894 TCCCTGTTCTTTATTGTTGTTGTAGT 58.942 34.615 0.00 0.00 0.00 2.73
2795 4431 7.504924 TCCCTGTTCTTTATTGTTGTTGTAG 57.495 36.000 0.00 0.00 0.00 2.74
2796 4432 7.467539 CGTTCCCTGTTCTTTATTGTTGTTGTA 60.468 37.037 0.00 0.00 0.00 2.41
2797 4433 6.569780 GTTCCCTGTTCTTTATTGTTGTTGT 58.430 36.000 0.00 0.00 0.00 3.32
2798 4434 5.685511 CGTTCCCTGTTCTTTATTGTTGTTG 59.314 40.000 0.00 0.00 0.00 3.33
2799 4435 5.221165 CCGTTCCCTGTTCTTTATTGTTGTT 60.221 40.000 0.00 0.00 0.00 2.83
2800 4436 4.277423 CCGTTCCCTGTTCTTTATTGTTGT 59.723 41.667 0.00 0.00 0.00 3.32
2801 4437 4.794169 CCGTTCCCTGTTCTTTATTGTTG 58.206 43.478 0.00 0.00 0.00 3.33
2802 4438 3.254903 GCCGTTCCCTGTTCTTTATTGTT 59.745 43.478 0.00 0.00 0.00 2.83
2803 4439 2.817844 GCCGTTCCCTGTTCTTTATTGT 59.182 45.455 0.00 0.00 0.00 2.71
2804 4440 2.817258 TGCCGTTCCCTGTTCTTTATTG 59.183 45.455 0.00 0.00 0.00 1.90
2805 4441 3.081804 CTGCCGTTCCCTGTTCTTTATT 58.918 45.455 0.00 0.00 0.00 1.40
2806 4442 2.618045 CCTGCCGTTCCCTGTTCTTTAT 60.618 50.000 0.00 0.00 0.00 1.40
2807 4443 1.271163 CCTGCCGTTCCCTGTTCTTTA 60.271 52.381 0.00 0.00 0.00 1.85
2808 4444 0.537371 CCTGCCGTTCCCTGTTCTTT 60.537 55.000 0.00 0.00 0.00 2.52
2809 4445 1.073199 CCTGCCGTTCCCTGTTCTT 59.927 57.895 0.00 0.00 0.00 2.52
2810 4446 2.147387 ACCTGCCGTTCCCTGTTCT 61.147 57.895 0.00 0.00 0.00 3.01
2811 4447 1.966451 CACCTGCCGTTCCCTGTTC 60.966 63.158 0.00 0.00 0.00 3.18
2812 4448 2.113139 CACCTGCCGTTCCCTGTT 59.887 61.111 0.00 0.00 0.00 3.16
2813 4449 4.643387 GCACCTGCCGTTCCCTGT 62.643 66.667 0.00 0.00 34.31 4.00
2814 4450 4.641645 TGCACCTGCCGTTCCCTG 62.642 66.667 0.00 0.00 41.18 4.45
2815 4451 4.643387 GTGCACCTGCCGTTCCCT 62.643 66.667 5.22 0.00 41.18 4.20
2827 4463 3.168237 AAAGACTGCGTGCGTGCAC 62.168 57.895 14.81 14.81 40.62 4.57
2828 4464 2.894879 AAAGACTGCGTGCGTGCA 60.895 55.556 2.51 2.51 43.95 4.57
2829 4465 2.373524 TTCAAAGACTGCGTGCGTGC 62.374 55.000 0.00 0.00 0.00 5.34
2830 4466 0.027455 TTTCAAAGACTGCGTGCGTG 59.973 50.000 0.00 0.00 0.00 5.34
2831 4467 0.730265 TTTTCAAAGACTGCGTGCGT 59.270 45.000 0.00 0.00 0.00 5.24
2832 4468 1.821336 TTTTTCAAAGACTGCGTGCG 58.179 45.000 0.00 0.00 0.00 5.34
2833 4469 4.143535 GCTTATTTTTCAAAGACTGCGTGC 60.144 41.667 0.00 0.00 0.00 5.34
2834 4470 4.975502 TGCTTATTTTTCAAAGACTGCGTG 59.024 37.500 0.00 0.00 0.00 5.34
2835 4471 5.181690 TGCTTATTTTTCAAAGACTGCGT 57.818 34.783 0.00 0.00 0.00 5.24
2836 4472 4.089065 GCTGCTTATTTTTCAAAGACTGCG 59.911 41.667 0.00 0.00 0.00 5.18
2837 4473 4.984161 TGCTGCTTATTTTTCAAAGACTGC 59.016 37.500 0.00 0.00 0.00 4.40
2838 4474 5.118203 GCTGCTGCTTATTTTTCAAAGACTG 59.882 40.000 8.53 0.00 36.03 3.51
2839 4475 5.225642 GCTGCTGCTTATTTTTCAAAGACT 58.774 37.500 8.53 0.00 36.03 3.24
2840 4476 5.506644 GCTGCTGCTTATTTTTCAAAGAC 57.493 39.130 8.53 0.00 36.03 3.01
2855 4491 1.174712 TTGAGGAAACCAGCTGCTGC 61.175 55.000 23.86 7.62 40.05 5.25
2856 4492 0.879765 CTTGAGGAAACCAGCTGCTG 59.120 55.000 22.44 22.44 0.00 4.41
2857 4493 0.475906 ACTTGAGGAAACCAGCTGCT 59.524 50.000 8.66 0.00 0.00 4.24
2858 4494 0.595095 CACTTGAGGAAACCAGCTGC 59.405 55.000 8.66 0.00 0.00 5.25
2859 4495 1.242076 CCACTTGAGGAAACCAGCTG 58.758 55.000 6.78 6.78 0.00 4.24
2860 4496 0.846693 ACCACTTGAGGAAACCAGCT 59.153 50.000 0.00 0.00 0.00 4.24
2861 4497 1.239347 GACCACTTGAGGAAACCAGC 58.761 55.000 0.00 0.00 0.00 4.85
2862 4498 2.104792 TCTGACCACTTGAGGAAACCAG 59.895 50.000 0.00 0.00 0.00 4.00
2863 4499 2.104792 CTCTGACCACTTGAGGAAACCA 59.895 50.000 0.00 0.00 0.00 3.67
2864 4500 2.772287 CTCTGACCACTTGAGGAAACC 58.228 52.381 0.00 0.00 0.00 3.27
2870 4506 0.248843 GAGGCCTCTGACCACTTGAG 59.751 60.000 26.25 0.00 0.00 3.02
2871 4507 0.178921 AGAGGCCTCTGACCACTTGA 60.179 55.000 34.74 0.00 38.75 3.02
2872 4508 2.370718 AGAGGCCTCTGACCACTTG 58.629 57.895 34.74 0.00 38.75 3.16
2873 4509 4.987122 AGAGGCCTCTGACCACTT 57.013 55.556 34.74 7.88 38.75 3.16
2882 4518 1.675720 GCAGAGGAGACAGAGGCCTC 61.676 65.000 26.22 26.22 46.75 4.70
2883 4519 1.685421 GCAGAGGAGACAGAGGCCT 60.685 63.158 3.86 3.86 33.97 5.19
2884 4520 1.264045 AAGCAGAGGAGACAGAGGCC 61.264 60.000 0.00 0.00 0.00 5.19
2885 4521 0.612744 AAAGCAGAGGAGACAGAGGC 59.387 55.000 0.00 0.00 0.00 4.70
2886 4522 2.038295 ACAAAAGCAGAGGAGACAGAGG 59.962 50.000 0.00 0.00 0.00 3.69
2887 4523 3.324993 GACAAAAGCAGAGGAGACAGAG 58.675 50.000 0.00 0.00 0.00 3.35
2888 4524 2.037772 GGACAAAAGCAGAGGAGACAGA 59.962 50.000 0.00 0.00 0.00 3.41
2889 4525 2.421619 GGACAAAAGCAGAGGAGACAG 58.578 52.381 0.00 0.00 0.00 3.51
2890 4526 1.270305 CGGACAAAAGCAGAGGAGACA 60.270 52.381 0.00 0.00 0.00 3.41
2891 4527 1.433534 CGGACAAAAGCAGAGGAGAC 58.566 55.000 0.00 0.00 0.00 3.36
2892 4528 0.321671 CCGGACAAAAGCAGAGGAGA 59.678 55.000 0.00 0.00 0.00 3.71
2893 4529 1.301677 GCCGGACAAAAGCAGAGGAG 61.302 60.000 5.05 0.00 0.00 3.69
2894 4530 1.302511 GCCGGACAAAAGCAGAGGA 60.303 57.895 5.05 0.00 0.00 3.71
2895 4531 1.301677 GAGCCGGACAAAAGCAGAGG 61.302 60.000 5.05 0.00 0.00 3.69
2896 4532 0.603707 TGAGCCGGACAAAAGCAGAG 60.604 55.000 5.05 0.00 0.00 3.35
2897 4533 0.603707 CTGAGCCGGACAAAAGCAGA 60.604 55.000 5.05 0.00 0.00 4.26
2898 4534 1.871772 CTGAGCCGGACAAAAGCAG 59.128 57.895 5.05 0.00 0.00 4.24
2899 4535 2.260869 GCTGAGCCGGACAAAAGCA 61.261 57.895 5.05 0.00 0.00 3.91
2900 4536 2.563427 GCTGAGCCGGACAAAAGC 59.437 61.111 5.05 1.96 0.00 3.51
2901 4537 3.267974 GGCTGAGCCGGACAAAAG 58.732 61.111 8.16 0.00 39.62 2.27
2911 4547 0.250901 TGAAGGTCAAAGGGCTGAGC 60.251 55.000 0.00 0.00 42.84 4.26
2912 4548 2.290514 TGATGAAGGTCAAAGGGCTGAG 60.291 50.000 0.00 0.00 0.00 3.35
2913 4549 1.704628 TGATGAAGGTCAAAGGGCTGA 59.295 47.619 0.00 0.00 0.00 4.26
2914 4550 1.815003 GTGATGAAGGTCAAAGGGCTG 59.185 52.381 0.00 0.00 0.00 4.85
2915 4551 1.425066 TGTGATGAAGGTCAAAGGGCT 59.575 47.619 0.00 0.00 0.00 5.19
2916 4552 1.815003 CTGTGATGAAGGTCAAAGGGC 59.185 52.381 0.00 0.00 31.12 5.19
2917 4553 1.815003 GCTGTGATGAAGGTCAAAGGG 59.185 52.381 0.00 0.00 34.61 3.95
2918 4554 2.486982 CTGCTGTGATGAAGGTCAAAGG 59.513 50.000 0.00 0.00 34.61 3.11
2919 4555 2.095364 GCTGCTGTGATGAAGGTCAAAG 60.095 50.000 0.00 0.00 36.68 2.77
2920 4556 1.881973 GCTGCTGTGATGAAGGTCAAA 59.118 47.619 0.00 0.00 0.00 2.69
2921 4557 1.527034 GCTGCTGTGATGAAGGTCAA 58.473 50.000 0.00 0.00 0.00 3.18
2922 4558 0.321919 GGCTGCTGTGATGAAGGTCA 60.322 55.000 0.00 0.00 0.00 4.02
2923 4559 0.321919 TGGCTGCTGTGATGAAGGTC 60.322 55.000 0.00 0.00 0.00 3.85
2924 4560 0.607489 GTGGCTGCTGTGATGAAGGT 60.607 55.000 0.00 0.00 0.00 3.50
2925 4561 0.607217 TGTGGCTGCTGTGATGAAGG 60.607 55.000 0.00 0.00 0.00 3.46
2926 4562 0.803117 CTGTGGCTGCTGTGATGAAG 59.197 55.000 0.00 0.00 0.00 3.02
2927 4563 0.607217 CCTGTGGCTGCTGTGATGAA 60.607 55.000 0.00 0.00 0.00 2.57
2928 4564 1.002990 CCTGTGGCTGCTGTGATGA 60.003 57.895 0.00 0.00 0.00 2.92
2929 4565 2.697761 GCCTGTGGCTGCTGTGATG 61.698 63.158 0.00 0.00 46.69 3.07
2930 4566 2.360852 GCCTGTGGCTGCTGTGAT 60.361 61.111 0.00 0.00 46.69 3.06
2953 4589 4.183686 CATTTGCTCTGCCGGCCG 62.184 66.667 26.77 21.04 0.00 6.13
2954 4590 1.718757 CTACATTTGCTCTGCCGGCC 61.719 60.000 26.77 9.02 0.00 6.13
2955 4591 1.723870 CTACATTTGCTCTGCCGGC 59.276 57.895 22.73 22.73 0.00 6.13
2956 4592 0.745845 AGCTACATTTGCTCTGCCGG 60.746 55.000 0.00 0.00 35.67 6.13
2957 4593 1.089920 AAGCTACATTTGCTCTGCCG 58.910 50.000 0.00 0.00 40.22 5.69
2958 4594 3.485877 CGTAAAGCTACATTTGCTCTGCC 60.486 47.826 0.00 0.00 40.22 4.85
2959 4595 3.370978 TCGTAAAGCTACATTTGCTCTGC 59.629 43.478 0.00 0.00 40.22 4.26
2960 4596 4.490959 CGTCGTAAAGCTACATTTGCTCTG 60.491 45.833 0.00 0.00 40.22 3.35
2961 4597 3.612860 CGTCGTAAAGCTACATTTGCTCT 59.387 43.478 0.00 0.00 40.22 4.09
2962 4598 3.781280 GCGTCGTAAAGCTACATTTGCTC 60.781 47.826 0.00 0.00 40.22 4.26
2963 4599 2.093783 GCGTCGTAAAGCTACATTTGCT 59.906 45.455 0.00 0.00 43.32 3.91
2964 4600 2.428114 GCGTCGTAAAGCTACATTTGC 58.572 47.619 0.00 0.00 0.00 3.68
2965 4601 2.413796 TGGCGTCGTAAAGCTACATTTG 59.586 45.455 0.00 0.00 0.00 2.32
2966 4602 2.690786 TGGCGTCGTAAAGCTACATTT 58.309 42.857 0.00 0.00 0.00 2.32
2967 4603 2.373540 TGGCGTCGTAAAGCTACATT 57.626 45.000 0.00 0.00 0.00 2.71
2968 4604 2.159156 TGATGGCGTCGTAAAGCTACAT 60.159 45.455 1.67 0.00 0.00 2.29
2969 4605 1.202817 TGATGGCGTCGTAAAGCTACA 59.797 47.619 1.67 0.00 0.00 2.74
2970 4606 1.852895 CTGATGGCGTCGTAAAGCTAC 59.147 52.381 1.67 0.00 0.00 3.58
2971 4607 1.475280 ACTGATGGCGTCGTAAAGCTA 59.525 47.619 1.67 0.00 0.00 3.32
2972 4608 0.246635 ACTGATGGCGTCGTAAAGCT 59.753 50.000 1.67 0.00 0.00 3.74
2973 4609 2.750815 ACTGATGGCGTCGTAAAGC 58.249 52.632 1.67 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.