Multiple sequence alignment - TraesCS7D01G404500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G404500 chr7D 100.000 3511 0 0 1 3511 521896307 521892797 0.000000e+00 6484.0
1 TraesCS7D01G404500 chr7D 95.614 342 13 2 1 340 292365905 292365564 6.630000e-152 547.0
2 TraesCS7D01G404500 chr7D 95.029 342 13 3 1 338 593400247 593399906 5.160000e-148 534.0
3 TraesCS7D01G404500 chr7D 77.612 469 83 18 1980 2434 198501867 198502327 7.470000e-67 265.0
4 TraesCS7D01G404500 chr7B 92.308 2587 92 33 503 3058 555710321 555707811 0.000000e+00 3576.0
5 TraesCS7D01G404500 chr7B 81.674 442 26 25 3068 3501 555707754 555707360 2.030000e-82 316.0
6 TraesCS7D01G404500 chr7B 90.278 72 6 1 333 403 555710424 555710353 3.730000e-15 93.5
7 TraesCS7D01G404500 chr7A 90.805 2708 103 72 618 3280 602231183 602233789 0.000000e+00 3487.0
8 TraesCS7D01G404500 chr7A 80.321 249 25 16 3266 3503 602233854 602234089 2.170000e-37 167.0
9 TraesCS7D01G404500 chr2D 97.101 483 14 0 1527 2009 80653611 80654093 0.000000e+00 815.0
10 TraesCS7D01G404500 chr2D 95.308 341 11 5 1 337 593721965 593721626 1.430000e-148 536.0
11 TraesCS7D01G404500 chr2D 95.029 342 12 5 1 338 516845584 516845924 1.860000e-147 532.0
12 TraesCS7D01G404500 chr2D 95.000 340 12 4 1 335 295158962 295159301 2.400000e-146 529.0
13 TraesCS7D01G404500 chr6A 79.720 1144 201 20 1354 2486 71066744 71067867 0.000000e+00 798.0
14 TraesCS7D01G404500 chr6D 79.072 1142 212 19 1354 2486 56551986 56553109 0.000000e+00 760.0
15 TraesCS7D01G404500 chr6D 95.000 340 14 3 1 337 389334413 389334074 6.670000e-147 531.0
16 TraesCS7D01G404500 chr6D 94.706 340 14 3 1 337 467364725 467365063 3.100000e-145 525.0
17 TraesCS7D01G404500 chr6B 78.772 1140 219 16 1354 2486 127039793 127040916 0.000000e+00 743.0
18 TraesCS7D01G404500 chr6B 72.598 916 211 36 1595 2487 597557633 597556735 7.470000e-67 265.0
19 TraesCS7D01G404500 chr1D 93.699 492 18 2 1527 2018 344130545 344130067 0.000000e+00 725.0
20 TraesCS7D01G404500 chr4D 95.322 342 12 4 1 340 36584088 36583749 1.110000e-149 540.0
21 TraesCS7D01G404500 chr3D 94.706 340 16 2 1 338 594544500 594544839 8.630000e-146 527.0
22 TraesCS7D01G404500 chr3A 84.821 112 15 2 2128 2238 12440807 12440917 1.030000e-20 111.0
23 TraesCS7D01G404500 chr3A 79.518 166 25 9 2112 2274 12960953 12961112 3.710000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G404500 chr7D 521892797 521896307 3510 True 6484.0 6484 100.000000 1 3511 1 chr7D.!!$R2 3510
1 TraesCS7D01G404500 chr7B 555707360 555710424 3064 True 1328.5 3576 88.086667 333 3501 3 chr7B.!!$R1 3168
2 TraesCS7D01G404500 chr7A 602231183 602234089 2906 False 1827.0 3487 85.563000 618 3503 2 chr7A.!!$F1 2885
3 TraesCS7D01G404500 chr6A 71066744 71067867 1123 False 798.0 798 79.720000 1354 2486 1 chr6A.!!$F1 1132
4 TraesCS7D01G404500 chr6D 56551986 56553109 1123 False 760.0 760 79.072000 1354 2486 1 chr6D.!!$F1 1132
5 TraesCS7D01G404500 chr6B 127039793 127040916 1123 False 743.0 743 78.772000 1354 2486 1 chr6B.!!$F1 1132
6 TraesCS7D01G404500 chr6B 597556735 597557633 898 True 265.0 265 72.598000 1595 2487 1 chr6B.!!$R1 892

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.033642 GCTATCTACCGGTGAAGGGC 59.966 60.0 19.93 12.43 35.02 5.19 F
586 587 0.094216 CAGAGCGCGAGTGTGAAATG 59.906 55.0 12.10 0.00 0.00 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1702 1760 0.037326 GATGTCCGTGAGCAGGAACA 60.037 55.000 0.00 0.0 39.84 3.18 R
2514 2582 2.047465 AGGTGCAAGCAGAGCTCG 60.047 61.111 8.37 4.6 38.25 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.116463 GCTATTTTTCCGGCGGGG 58.884 61.111 27.98 0.32 37.02 5.73
18 19 1.452470 GCTATTTTTCCGGCGGGGA 60.452 57.895 27.98 12.78 45.40 4.81
26 27 3.953775 CCGGCGGGGAATGGCTAT 61.954 66.667 20.56 0.00 38.47 2.97
27 28 2.358737 CGGCGGGGAATGGCTATC 60.359 66.667 0.00 0.00 0.00 2.08
28 29 2.883828 CGGCGGGGAATGGCTATCT 61.884 63.158 0.00 0.00 0.00 1.98
29 30 1.541310 CGGCGGGGAATGGCTATCTA 61.541 60.000 0.00 0.00 0.00 1.98
30 31 0.036294 GGCGGGGAATGGCTATCTAC 60.036 60.000 0.00 0.00 0.00 2.59
31 32 0.036294 GCGGGGAATGGCTATCTACC 60.036 60.000 0.00 0.00 0.00 3.18
32 33 0.246635 CGGGGAATGGCTATCTACCG 59.753 60.000 5.21 5.21 33.53 4.02
33 34 0.613777 GGGGAATGGCTATCTACCGG 59.386 60.000 0.00 0.00 0.00 5.28
34 35 1.349067 GGGAATGGCTATCTACCGGT 58.651 55.000 13.98 13.98 0.00 5.28
35 36 1.002087 GGGAATGGCTATCTACCGGTG 59.998 57.143 19.93 7.59 0.00 4.94
36 37 1.968493 GGAATGGCTATCTACCGGTGA 59.032 52.381 19.93 13.35 0.00 4.02
37 38 2.367567 GGAATGGCTATCTACCGGTGAA 59.632 50.000 19.93 5.07 0.00 3.18
38 39 3.555168 GGAATGGCTATCTACCGGTGAAG 60.555 52.174 19.93 7.88 0.00 3.02
39 40 1.410004 TGGCTATCTACCGGTGAAGG 58.590 55.000 19.93 10.49 37.30 3.46
40 41 0.680061 GGCTATCTACCGGTGAAGGG 59.320 60.000 19.93 5.83 35.02 3.95
41 42 0.033642 GCTATCTACCGGTGAAGGGC 59.966 60.000 19.93 12.43 35.02 5.19
42 43 0.314302 CTATCTACCGGTGAAGGGCG 59.686 60.000 19.93 0.00 35.02 6.13
43 44 1.111116 TATCTACCGGTGAAGGGCGG 61.111 60.000 19.93 0.00 35.02 6.13
44 45 4.832608 CTACCGGTGAAGGGCGGC 62.833 72.222 19.93 0.00 35.02 6.53
66 67 3.379445 CGGCGCCGGGATATACCT 61.379 66.667 40.50 0.00 38.98 3.08
67 68 2.048023 CGGCGCCGGGATATACCTA 61.048 63.158 40.50 0.00 38.98 3.08
68 69 1.814527 GGCGCCGGGATATACCTAG 59.185 63.158 12.58 0.00 38.98 3.02
69 70 0.969409 GGCGCCGGGATATACCTAGT 60.969 60.000 12.58 0.00 38.98 2.57
70 71 0.172803 GCGCCGGGATATACCTAGTG 59.827 60.000 2.18 1.21 38.98 2.74
71 72 0.815734 CGCCGGGATATACCTAGTGG 59.184 60.000 2.18 0.00 38.98 4.00
72 73 0.535797 GCCGGGATATACCTAGTGGC 59.464 60.000 2.18 4.98 38.98 5.01
73 74 0.815734 CCGGGATATACCTAGTGGCG 59.184 60.000 1.51 0.00 38.98 5.69
74 75 0.815734 CGGGATATACCTAGTGGCGG 59.184 60.000 1.51 0.00 38.98 6.13
75 76 0.535797 GGGATATACCTAGTGGCGGC 59.464 60.000 0.00 0.00 38.98 6.53
76 77 0.535797 GGATATACCTAGTGGCGGCC 59.464 60.000 13.32 13.32 36.63 6.13
77 78 0.172803 GATATACCTAGTGGCGGCCG 59.827 60.000 24.05 24.05 36.63 6.13
78 79 0.251474 ATATACCTAGTGGCGGCCGA 60.251 55.000 33.48 5.65 36.63 5.54
79 80 0.892358 TATACCTAGTGGCGGCCGAG 60.892 60.000 33.48 17.28 36.63 4.63
80 81 2.635787 ATACCTAGTGGCGGCCGAGA 62.636 60.000 33.48 11.63 36.63 4.04
81 82 3.905678 CCTAGTGGCGGCCGAGAG 61.906 72.222 33.48 16.67 0.00 3.20
82 83 4.577246 CTAGTGGCGGCCGAGAGC 62.577 72.222 33.48 15.35 42.60 4.09
110 111 3.839432 GGAGGCGAGTCGGGGAAG 61.839 72.222 15.52 0.00 0.00 3.46
111 112 2.754658 GAGGCGAGTCGGGGAAGA 60.755 66.667 15.52 0.00 0.00 2.87
112 113 2.283676 AGGCGAGTCGGGGAAGAA 60.284 61.111 15.52 0.00 0.00 2.52
113 114 1.885163 GAGGCGAGTCGGGGAAGAAA 61.885 60.000 15.52 0.00 0.00 2.52
114 115 1.004200 GGCGAGTCGGGGAAGAAAA 60.004 57.895 15.52 0.00 0.00 2.29
115 116 0.392595 GGCGAGTCGGGGAAGAAAAT 60.393 55.000 15.52 0.00 0.00 1.82
116 117 1.007580 GCGAGTCGGGGAAGAAAATC 58.992 55.000 15.52 0.00 0.00 2.17
117 118 1.405661 GCGAGTCGGGGAAGAAAATCT 60.406 52.381 15.52 0.00 0.00 2.40
118 119 2.935676 GCGAGTCGGGGAAGAAAATCTT 60.936 50.000 15.52 0.00 39.87 2.40
119 120 2.673368 CGAGTCGGGGAAGAAAATCTTG 59.327 50.000 4.10 0.00 36.73 3.02
120 121 3.616560 CGAGTCGGGGAAGAAAATCTTGA 60.617 47.826 4.10 0.00 36.73 3.02
121 122 3.676093 AGTCGGGGAAGAAAATCTTGAC 58.324 45.455 0.00 0.00 36.73 3.18
122 123 3.328050 AGTCGGGGAAGAAAATCTTGACT 59.672 43.478 0.00 1.86 36.73 3.41
123 124 4.072839 GTCGGGGAAGAAAATCTTGACTT 58.927 43.478 0.00 0.00 36.73 3.01
124 125 4.519350 GTCGGGGAAGAAAATCTTGACTTT 59.481 41.667 0.00 0.00 36.73 2.66
125 126 5.009710 GTCGGGGAAGAAAATCTTGACTTTT 59.990 40.000 0.00 0.00 36.73 2.27
126 127 5.240844 TCGGGGAAGAAAATCTTGACTTTTC 59.759 40.000 0.00 0.00 36.73 2.29
127 128 5.009610 CGGGGAAGAAAATCTTGACTTTTCA 59.990 40.000 10.19 0.00 42.42 2.69
128 129 6.216569 GGGGAAGAAAATCTTGACTTTTCAC 58.783 40.000 10.19 4.95 42.42 3.18
129 130 6.216569 GGGAAGAAAATCTTGACTTTTCACC 58.783 40.000 10.19 11.31 42.42 4.02
130 131 6.040955 GGGAAGAAAATCTTGACTTTTCACCT 59.959 38.462 16.35 3.11 42.42 4.00
131 132 6.920210 GGAAGAAAATCTTGACTTTTCACCTG 59.080 38.462 10.19 0.00 42.42 4.00
132 133 7.201821 GGAAGAAAATCTTGACTTTTCACCTGA 60.202 37.037 10.19 0.00 42.42 3.86
133 134 7.032377 AGAAAATCTTGACTTTTCACCTGAC 57.968 36.000 10.19 0.00 42.42 3.51
134 135 5.424121 AAATCTTGACTTTTCACCTGACG 57.576 39.130 0.00 0.00 0.00 4.35
135 136 2.833794 TCTTGACTTTTCACCTGACGG 58.166 47.619 0.00 0.00 0.00 4.79
136 137 1.264288 CTTGACTTTTCACCTGACGGC 59.736 52.381 0.00 0.00 0.00 5.68
137 138 0.878523 TGACTTTTCACCTGACGGCG 60.879 55.000 4.80 4.80 0.00 6.46
138 139 0.878961 GACTTTTCACCTGACGGCGT 60.879 55.000 14.65 14.65 0.00 5.68
139 140 1.157870 ACTTTTCACCTGACGGCGTG 61.158 55.000 21.19 5.62 0.00 5.34
140 141 1.841663 CTTTTCACCTGACGGCGTGG 61.842 60.000 21.19 16.99 0.00 4.94
141 142 3.818121 TTTCACCTGACGGCGTGGG 62.818 63.158 21.19 21.59 0.00 4.61
155 156 4.912395 TGGGCCAGCCGCACTTTT 62.912 61.111 0.00 0.00 43.53 2.27
156 157 4.056125 GGGCCAGCCGCACTTTTC 62.056 66.667 4.39 0.00 38.16 2.29
157 158 4.056125 GGCCAGCCGCACTTTTCC 62.056 66.667 0.00 0.00 40.31 3.13
158 159 4.056125 GCCAGCCGCACTTTTCCC 62.056 66.667 0.00 0.00 37.47 3.97
159 160 2.282462 CCAGCCGCACTTTTCCCT 60.282 61.111 0.00 0.00 0.00 4.20
160 161 1.903404 CCAGCCGCACTTTTCCCTT 60.903 57.895 0.00 0.00 0.00 3.95
161 162 1.286880 CAGCCGCACTTTTCCCTTG 59.713 57.895 0.00 0.00 0.00 3.61
162 163 2.049156 GCCGCACTTTTCCCTTGC 60.049 61.111 0.00 0.00 0.00 4.01
165 166 2.049156 GCACTTTTCCCTTGCGCC 60.049 61.111 4.18 0.00 0.00 6.53
166 167 2.255252 CACTTTTCCCTTGCGCCG 59.745 61.111 4.18 0.00 0.00 6.46
167 168 2.983592 ACTTTTCCCTTGCGCCGG 60.984 61.111 4.18 5.21 0.00 6.13
168 169 2.671619 CTTTTCCCTTGCGCCGGA 60.672 61.111 5.05 8.98 0.00 5.14
169 170 2.671619 TTTTCCCTTGCGCCGGAG 60.672 61.111 5.05 1.55 0.00 4.63
238 239 3.455152 AAAAAGGGCAGAACCGGC 58.545 55.556 0.00 0.00 40.62 6.13
239 240 2.561037 AAAAAGGGCAGAACCGGCG 61.561 57.895 0.00 0.00 40.62 6.46
244 245 3.670377 GGCAGAACCGGCGCTTTT 61.670 61.111 7.64 0.00 0.00 2.27
245 246 2.126850 GCAGAACCGGCGCTTTTC 60.127 61.111 7.64 7.71 0.00 2.29
246 247 2.173382 CAGAACCGGCGCTTTTCG 59.827 61.111 7.64 1.19 42.12 3.46
247 248 2.280592 AGAACCGGCGCTTTTCGT 60.281 55.556 7.64 0.00 41.07 3.85
248 249 2.172659 GAACCGGCGCTTTTCGTC 59.827 61.111 7.64 0.00 41.07 4.20
249 250 2.589442 AACCGGCGCTTTTCGTCA 60.589 55.556 7.64 0.00 44.36 4.35
250 251 1.908066 GAACCGGCGCTTTTCGTCAT 61.908 55.000 7.64 0.00 44.36 3.06
251 252 1.908066 AACCGGCGCTTTTCGTCATC 61.908 55.000 7.64 0.00 44.36 2.92
252 253 2.399611 CGGCGCTTTTCGTCATCC 59.600 61.111 7.64 0.00 44.36 3.51
253 254 2.100631 CGGCGCTTTTCGTCATCCT 61.101 57.895 7.64 0.00 44.36 3.24
254 255 1.425428 GGCGCTTTTCGTCATCCTG 59.575 57.895 7.64 0.00 43.43 3.86
255 256 1.019278 GGCGCTTTTCGTCATCCTGA 61.019 55.000 7.64 0.00 43.43 3.86
256 257 0.371645 GCGCTTTTCGTCATCCTGAG 59.628 55.000 0.00 0.00 41.07 3.35
257 258 1.996292 CGCTTTTCGTCATCCTGAGA 58.004 50.000 0.00 0.00 0.00 3.27
258 259 2.544685 CGCTTTTCGTCATCCTGAGAT 58.455 47.619 0.00 0.00 0.00 2.75
259 260 5.357800 GCGCTTTTCGTCATCCTGAGATG 62.358 52.174 0.00 0.00 43.91 2.90
266 267 3.285838 CATCCTGAGATGCGACTGG 57.714 57.895 0.00 0.00 43.35 4.00
267 268 0.749049 CATCCTGAGATGCGACTGGA 59.251 55.000 0.00 0.00 43.35 3.86
268 269 0.749649 ATCCTGAGATGCGACTGGAC 59.250 55.000 0.00 0.00 37.06 4.02
269 270 0.323816 TCCTGAGATGCGACTGGACT 60.324 55.000 0.00 0.00 31.16 3.85
270 271 0.534412 CCTGAGATGCGACTGGACTT 59.466 55.000 0.00 0.00 0.00 3.01
271 272 1.066573 CCTGAGATGCGACTGGACTTT 60.067 52.381 0.00 0.00 0.00 2.66
272 273 2.613977 CCTGAGATGCGACTGGACTTTT 60.614 50.000 0.00 0.00 0.00 2.27
273 274 3.070018 CTGAGATGCGACTGGACTTTTT 58.930 45.455 0.00 0.00 0.00 1.94
288 289 4.320928 TTTTTGACGCCAGCGCCG 62.321 61.111 12.72 2.67 44.19 6.46
293 294 4.020378 GACGCCAGCGCCGAAAAA 62.020 61.111 12.72 0.00 44.19 1.94
294 295 3.928618 GACGCCAGCGCCGAAAAAG 62.929 63.158 12.72 0.00 44.19 2.27
295 296 4.025401 CGCCAGCGCCGAAAAAGT 62.025 61.111 2.29 0.00 0.00 2.66
296 297 2.126850 GCCAGCGCCGAAAAAGTC 60.127 61.111 2.29 0.00 0.00 3.01
301 302 4.439472 CGCCGAAAAAGTCGCCGG 62.439 66.667 0.00 0.00 46.11 6.13
304 305 3.428282 CGAAAAAGTCGCCGGGGG 61.428 66.667 19.63 4.42 44.14 5.40
340 341 2.801342 CGGCTGGAGATGCTCTTAGTTC 60.801 54.545 0.00 0.00 0.00 3.01
343 344 1.137086 TGGAGATGCTCTTAGTTCGGC 59.863 52.381 0.00 0.00 0.00 5.54
344 345 1.482278 GAGATGCTCTTAGTTCGGCG 58.518 55.000 0.00 0.00 0.00 6.46
345 346 0.103208 AGATGCTCTTAGTTCGGCGG 59.897 55.000 7.21 0.00 0.00 6.13
348 349 1.872679 GCTCTTAGTTCGGCGGACG 60.873 63.158 13.50 0.00 46.11 4.79
423 424 3.385384 CCAGCGTGCTCCTCCTGA 61.385 66.667 0.00 0.00 0.00 3.86
424 425 2.183811 CAGCGTGCTCCTCCTGAG 59.816 66.667 0.00 0.00 44.47 3.35
431 432 2.187424 CTCCTCCTGAGCTGCAGC 59.813 66.667 31.53 31.53 43.50 5.25
432 433 2.605601 TCCTCCTGAGCTGCAGCA 60.606 61.111 38.24 19.64 43.50 4.41
433 434 2.436292 CCTCCTGAGCTGCAGCAC 60.436 66.667 38.24 32.47 43.50 4.40
434 435 2.814341 CTCCTGAGCTGCAGCACG 60.814 66.667 38.24 25.88 43.50 5.34
442 443 3.123620 CTGCAGCACGCCCTTCTC 61.124 66.667 0.00 0.00 41.33 2.87
443 444 3.602513 CTGCAGCACGCCCTTCTCT 62.603 63.158 0.00 0.00 41.33 3.10
444 445 2.359230 GCAGCACGCCCTTCTCTT 60.359 61.111 0.00 0.00 32.94 2.85
445 446 2.394563 GCAGCACGCCCTTCTCTTC 61.395 63.158 0.00 0.00 32.94 2.87
446 447 1.004560 CAGCACGCCCTTCTCTTCA 60.005 57.895 0.00 0.00 0.00 3.02
447 448 1.004440 AGCACGCCCTTCTCTTCAC 60.004 57.895 0.00 0.00 0.00 3.18
448 449 1.004440 GCACGCCCTTCTCTTCACT 60.004 57.895 0.00 0.00 0.00 3.41
449 450 0.603975 GCACGCCCTTCTCTTCACTT 60.604 55.000 0.00 0.00 0.00 3.16
450 451 1.433534 CACGCCCTTCTCTTCACTTC 58.566 55.000 0.00 0.00 0.00 3.01
451 452 1.048601 ACGCCCTTCTCTTCACTTCA 58.951 50.000 0.00 0.00 0.00 3.02
452 453 1.270358 ACGCCCTTCTCTTCACTTCAC 60.270 52.381 0.00 0.00 0.00 3.18
453 454 1.270305 CGCCCTTCTCTTCACTTCACA 60.270 52.381 0.00 0.00 0.00 3.58
454 455 2.147150 GCCCTTCTCTTCACTTCACAC 58.853 52.381 0.00 0.00 0.00 3.82
455 456 2.772287 CCCTTCTCTTCACTTCACACC 58.228 52.381 0.00 0.00 0.00 4.16
456 457 2.408050 CCTTCTCTTCACTTCACACCG 58.592 52.381 0.00 0.00 0.00 4.94
457 458 2.035961 CCTTCTCTTCACTTCACACCGA 59.964 50.000 0.00 0.00 0.00 4.69
458 459 2.795175 TCTCTTCACTTCACACCGAC 57.205 50.000 0.00 0.00 0.00 4.79
459 460 2.028876 TCTCTTCACTTCACACCGACA 58.971 47.619 0.00 0.00 0.00 4.35
460 461 2.034685 TCTCTTCACTTCACACCGACAG 59.965 50.000 0.00 0.00 0.00 3.51
461 462 0.861837 CTTCACTTCACACCGACAGC 59.138 55.000 0.00 0.00 0.00 4.40
462 463 0.464036 TTCACTTCACACCGACAGCT 59.536 50.000 0.00 0.00 0.00 4.24
464 465 1.595382 ACTTCACACCGACAGCTGC 60.595 57.895 15.27 5.81 0.00 5.25
466 467 2.721971 CTTCACACCGACAGCTGCCT 62.722 60.000 15.27 0.00 0.00 4.75
482 483 1.168407 GCCTCTTGCAAGTGACAGCA 61.168 55.000 26.02 5.89 40.77 4.41
483 484 0.590195 CCTCTTGCAAGTGACAGCAC 59.410 55.000 26.02 0.00 45.49 4.40
499 500 2.501222 ACGCGTCGTGTCGTGATC 60.501 61.111 5.58 0.00 42.80 2.92
500 501 3.585574 CGCGTCGTGTCGTGATCG 61.586 66.667 0.00 0.00 42.80 3.69
501 502 2.501222 GCGTCGTGTCGTGATCGT 60.501 61.111 0.00 0.00 38.33 3.73
504 505 1.169408 CGTCGTGTCGTGATCGTAAG 58.831 55.000 0.00 0.00 38.33 2.34
506 507 2.222574 CGTCGTGTCGTGATCGTAAGTA 60.223 50.000 0.00 0.00 38.33 2.24
507 508 3.721791 CGTCGTGTCGTGATCGTAAGTAA 60.722 47.826 0.00 0.00 38.33 2.24
508 509 4.151070 GTCGTGTCGTGATCGTAAGTAAA 58.849 43.478 0.00 0.00 38.33 2.01
509 510 4.790140 GTCGTGTCGTGATCGTAAGTAAAT 59.210 41.667 0.00 0.00 38.33 1.40
510 511 4.789629 TCGTGTCGTGATCGTAAGTAAATG 59.210 41.667 0.00 0.00 38.33 2.32
511 512 4.789629 CGTGTCGTGATCGTAAGTAAATGA 59.210 41.667 0.00 0.00 38.33 2.57
512 513 5.053221 CGTGTCGTGATCGTAAGTAAATGAG 60.053 44.000 0.00 0.00 38.33 2.90
513 514 5.229469 GTGTCGTGATCGTAAGTAAATGAGG 59.771 44.000 0.00 0.00 38.33 3.86
514 515 5.124297 TGTCGTGATCGTAAGTAAATGAGGA 59.876 40.000 0.00 0.00 38.33 3.71
515 516 6.032094 GTCGTGATCGTAAGTAAATGAGGAA 58.968 40.000 0.00 0.00 38.33 3.36
516 517 6.196724 GTCGTGATCGTAAGTAAATGAGGAAG 59.803 42.308 0.00 0.00 38.33 3.46
517 518 6.094464 TCGTGATCGTAAGTAAATGAGGAAGA 59.906 38.462 0.00 0.00 38.33 2.87
518 519 6.196724 CGTGATCGTAAGTAAATGAGGAAGAC 59.803 42.308 0.00 0.00 39.48 3.01
536 537 4.060038 AGACGTGTTTCAGACAGACATT 57.940 40.909 0.00 0.00 39.39 2.71
561 562 1.079612 GCCTTGGAAGTTGCCATGC 60.080 57.895 0.00 0.00 37.86 4.06
580 581 0.941463 CTGTTTCAGAGCGCGAGTGT 60.941 55.000 12.10 0.00 32.44 3.55
586 587 0.094216 CAGAGCGCGAGTGTGAAATG 59.906 55.000 12.10 0.00 0.00 2.32
588 589 1.002366 GAGCGCGAGTGTGAAATGAT 58.998 50.000 12.10 0.00 0.00 2.45
589 590 0.723414 AGCGCGAGTGTGAAATGATG 59.277 50.000 12.10 0.00 0.00 3.07
591 592 1.128507 GCGCGAGTGTGAAATGATGAA 59.871 47.619 12.10 0.00 0.00 2.57
592 593 2.223112 GCGCGAGTGTGAAATGATGAAT 60.223 45.455 12.10 0.00 0.00 2.57
593 594 3.001228 GCGCGAGTGTGAAATGATGAATA 59.999 43.478 12.10 0.00 0.00 1.75
594 595 4.319046 GCGCGAGTGTGAAATGATGAATAT 60.319 41.667 12.10 0.00 0.00 1.28
596 597 5.613360 CGCGAGTGTGAAATGATGAATATCC 60.613 44.000 0.00 0.00 32.09 2.59
597 598 5.468072 GCGAGTGTGAAATGATGAATATCCT 59.532 40.000 0.00 0.00 32.09 3.24
598 599 6.565435 GCGAGTGTGAAATGATGAATATCCTG 60.565 42.308 0.00 0.00 32.09 3.86
599 600 6.703165 CGAGTGTGAAATGATGAATATCCTGA 59.297 38.462 0.00 0.00 32.09 3.86
600 601 7.307042 CGAGTGTGAAATGATGAATATCCTGAC 60.307 40.741 0.00 0.00 32.09 3.51
601 602 6.481313 AGTGTGAAATGATGAATATCCTGACG 59.519 38.462 0.00 0.00 32.09 4.35
602 603 6.479990 GTGTGAAATGATGAATATCCTGACGA 59.520 38.462 0.00 0.00 32.09 4.20
604 605 5.698089 TGAAATGATGAATATCCTGACGAGC 59.302 40.000 0.00 0.00 32.09 5.03
607 608 5.982890 TGATGAATATCCTGACGAGCATA 57.017 39.130 0.00 0.00 32.09 3.14
608 609 5.958955 TGATGAATATCCTGACGAGCATAG 58.041 41.667 0.00 0.00 32.09 2.23
609 610 4.179926 TGAATATCCTGACGAGCATAGC 57.820 45.455 0.00 0.00 0.00 2.97
699 711 1.079336 GCCAGTGGGTCGTTAGTCC 60.079 63.158 12.15 0.00 36.17 3.85
700 712 1.595357 CCAGTGGGTCGTTAGTCCC 59.405 63.158 0.00 0.00 44.58 4.46
707 719 3.766691 TCGTTAGTCCCGGGCAGC 61.767 66.667 18.49 8.67 0.00 5.25
743 773 2.347490 CCTGCCGTAGTGGTTGCT 59.653 61.111 0.00 0.00 41.21 3.91
759 789 4.087892 CTGTGCCGGGTCCCTCAG 62.088 72.222 6.29 5.71 0.00 3.35
836 870 0.250901 CCACCAACCAACCTCTGAGG 60.251 60.000 22.00 22.00 42.49 3.86
843 877 1.738099 CAACCTCTGAGGCCGAACG 60.738 63.158 23.43 2.26 39.63 3.95
897 931 2.681344 CAACCACGCCTTTAATACCCTC 59.319 50.000 0.00 0.00 0.00 4.30
1158 1211 1.921869 TTCCCCGCTCAATTCCCTCC 61.922 60.000 0.00 0.00 0.00 4.30
1212 1265 2.023318 GGCTGATGCTGATGCTGAC 58.977 57.895 0.00 0.00 40.48 3.51
1221 1274 0.997932 CTGATGCTGACTTGCTCGAC 59.002 55.000 0.00 0.00 0.00 4.20
2514 2582 2.262915 CCTCCTCGCACTGACACC 59.737 66.667 0.00 0.00 0.00 4.16
2522 2590 1.735920 GCACTGACACCGAGCTCTG 60.736 63.158 12.85 8.03 0.00 3.35
2573 2641 5.772004 TGCTAGATTAGGTCCTCTTCTTCT 58.228 41.667 8.42 2.66 0.00 2.85
2576 2644 6.239204 GCTAGATTAGGTCCTCTTCTTCTTCC 60.239 46.154 8.42 0.00 0.00 3.46
2577 2645 5.849140 AGATTAGGTCCTCTTCTTCTTCCT 58.151 41.667 0.00 0.00 0.00 3.36
2578 2646 5.897250 AGATTAGGTCCTCTTCTTCTTCCTC 59.103 44.000 0.00 0.00 0.00 3.71
2579 2647 3.845109 AGGTCCTCTTCTTCTTCCTCT 57.155 47.619 0.00 0.00 0.00 3.69
2580 2648 3.708451 AGGTCCTCTTCTTCTTCCTCTC 58.292 50.000 0.00 0.00 0.00 3.20
2581 2649 3.336694 AGGTCCTCTTCTTCTTCCTCTCT 59.663 47.826 0.00 0.00 0.00 3.10
2582 2650 3.699538 GGTCCTCTTCTTCTTCCTCTCTC 59.300 52.174 0.00 0.00 0.00 3.20
2583 2651 4.569865 GGTCCTCTTCTTCTTCCTCTCTCT 60.570 50.000 0.00 0.00 0.00 3.10
2584 2652 4.640647 GTCCTCTTCTTCTTCCTCTCTCTC 59.359 50.000 0.00 0.00 0.00 3.20
2585 2653 4.540099 TCCTCTTCTTCTTCCTCTCTCTCT 59.460 45.833 0.00 0.00 0.00 3.10
2586 2654 4.884164 CCTCTTCTTCTTCCTCTCTCTCTC 59.116 50.000 0.00 0.00 0.00 3.20
2587 2655 5.339530 CCTCTTCTTCTTCCTCTCTCTCTCT 60.340 48.000 0.00 0.00 0.00 3.10
2588 2656 5.745227 TCTTCTTCTTCCTCTCTCTCTCTC 58.255 45.833 0.00 0.00 0.00 3.20
2589 2657 5.488919 TCTTCTTCTTCCTCTCTCTCTCTCT 59.511 44.000 0.00 0.00 0.00 3.10
2590 2658 5.359194 TCTTCTTCCTCTCTCTCTCTCTC 57.641 47.826 0.00 0.00 0.00 3.20
2591 2659 5.032846 TCTTCTTCCTCTCTCTCTCTCTCT 58.967 45.833 0.00 0.00 0.00 3.10
2592 2660 5.129485 TCTTCTTCCTCTCTCTCTCTCTCTC 59.871 48.000 0.00 0.00 0.00 3.20
2593 2661 4.624913 TCTTCCTCTCTCTCTCTCTCTCT 58.375 47.826 0.00 0.00 0.00 3.10
2594 2662 4.651503 TCTTCCTCTCTCTCTCTCTCTCTC 59.348 50.000 0.00 0.00 0.00 3.20
2595 2663 4.271807 TCCTCTCTCTCTCTCTCTCTCT 57.728 50.000 0.00 0.00 0.00 3.10
2665 2733 2.499289 TGTTGTTCTTGTGGTGCCAAAT 59.501 40.909 0.00 0.00 0.00 2.32
2685 2753 9.091784 GCCAAATATTCATTTCCTTCTTTTCTC 57.908 33.333 0.00 0.00 31.82 2.87
2881 2949 4.382470 CCATCACTTTGCTGCTACTCTACT 60.382 45.833 0.00 0.00 0.00 2.57
2906 2974 1.699083 TCAGAGACAGGGCATGTGAAA 59.301 47.619 10.56 0.00 44.17 2.69
2924 2992 5.978919 TGTGAAAAATTGAGTGTGATGCTTC 59.021 36.000 0.00 0.00 0.00 3.86
2939 3007 1.202806 TGCTTCTCTGGTCCCAAACTG 60.203 52.381 0.00 0.00 0.00 3.16
2977 3045 3.001414 CTCCTCATTCTCAACAGCACTG 58.999 50.000 0.00 0.00 0.00 3.66
2981 3049 2.369860 TCATTCTCAACAGCACTGGTCT 59.630 45.455 2.21 0.00 34.19 3.85
2984 3052 1.342496 TCTCAACAGCACTGGTCTCAG 59.658 52.381 2.21 0.00 46.10 3.35
2986 3054 1.342496 TCAACAGCACTGGTCTCAGAG 59.658 52.381 2.21 0.00 43.49 3.35
2987 3055 0.683973 AACAGCACTGGTCTCAGAGG 59.316 55.000 2.21 0.00 43.49 3.69
2988 3056 1.190833 ACAGCACTGGTCTCAGAGGG 61.191 60.000 2.21 0.00 43.49 4.30
2989 3057 2.267324 GCACTGGTCTCAGAGGGC 59.733 66.667 0.00 0.00 43.49 5.19
2990 3058 2.587247 GCACTGGTCTCAGAGGGCA 61.587 63.158 0.00 0.00 43.49 5.36
2991 3059 1.294780 CACTGGTCTCAGAGGGCAC 59.705 63.158 0.00 0.00 43.49 5.01
2992 3060 1.152247 ACTGGTCTCAGAGGGCACA 60.152 57.895 0.00 0.00 43.49 4.57
2993 3061 0.546267 ACTGGTCTCAGAGGGCACAT 60.546 55.000 0.00 0.00 43.49 3.21
3026 3094 0.250295 TGACCAGTTTCGGAGGCTTG 60.250 55.000 0.00 0.00 0.00 4.01
3028 3096 0.693049 ACCAGTTTCGGAGGCTTGAT 59.307 50.000 0.00 0.00 0.00 2.57
3030 3098 1.373570 CAGTTTCGGAGGCTTGATCC 58.626 55.000 0.00 0.00 0.00 3.36
3031 3099 0.984230 AGTTTCGGAGGCTTGATCCA 59.016 50.000 0.00 0.00 36.57 3.41
3032 3100 1.087501 GTTTCGGAGGCTTGATCCAC 58.912 55.000 0.00 0.00 36.57 4.02
3037 3105 2.162681 CGGAGGCTTGATCCACTTTTT 58.837 47.619 0.00 0.00 36.57 1.94
3049 3118 7.353414 TGATCCACTTTTTATGTTTTGGACA 57.647 32.000 0.00 0.00 43.71 4.02
3054 3123 8.097662 TCCACTTTTTATGTTTTGGACAAGTTT 58.902 29.630 0.00 0.00 42.62 2.66
3058 3127 9.810545 CTTTTTATGTTTTGGACAAGTTTAGGA 57.189 29.630 0.00 0.00 42.62 2.94
3066 3182 5.471556 TGGACAAGTTTAGGATGTCGTTA 57.528 39.130 0.00 0.00 43.38 3.18
3101 3217 4.500603 CCTAGGGCAGTACTGTATTACG 57.499 50.000 23.44 8.58 0.00 3.18
3102 3218 3.255149 CCTAGGGCAGTACTGTATTACGG 59.745 52.174 23.44 13.22 0.00 4.02
3127 3245 0.248843 CAGAAGCCCTGTCACTCTCC 59.751 60.000 0.00 0.00 38.10 3.71
3128 3246 0.178921 AGAAGCCCTGTCACTCTCCA 60.179 55.000 0.00 0.00 0.00 3.86
3129 3247 0.036858 GAAGCCCTGTCACTCTCCAC 60.037 60.000 0.00 0.00 0.00 4.02
3162 3280 5.654209 AGGTTATCTGAAGAATGAAAAGGCC 59.346 40.000 0.00 0.00 0.00 5.19
3177 3295 0.598065 AGGCCTTCGCAACATTTCAC 59.402 50.000 0.00 0.00 36.38 3.18
3181 3299 2.384382 CCTTCGCAACATTTCACACAC 58.616 47.619 0.00 0.00 0.00 3.82
3184 3302 3.266541 TCGCAACATTTCACACACATC 57.733 42.857 0.00 0.00 0.00 3.06
3187 3305 3.568538 GCAACATTTCACACACATCCTC 58.431 45.455 0.00 0.00 0.00 3.71
3194 3312 5.947228 TTTCACACACATCCTCTCATTTC 57.053 39.130 0.00 0.00 0.00 2.17
3200 3318 2.169352 CACATCCTCTCATTTCGGACCT 59.831 50.000 0.00 0.00 0.00 3.85
3202 3320 1.938585 TCCTCTCATTTCGGACCTGT 58.061 50.000 0.00 0.00 0.00 4.00
3203 3321 2.257207 TCCTCTCATTTCGGACCTGTT 58.743 47.619 0.00 0.00 0.00 3.16
3204 3322 2.637872 TCCTCTCATTTCGGACCTGTTT 59.362 45.455 0.00 0.00 0.00 2.83
3205 3323 3.003480 CCTCTCATTTCGGACCTGTTTC 58.997 50.000 0.00 0.00 0.00 2.78
3206 3324 3.557054 CCTCTCATTTCGGACCTGTTTCA 60.557 47.826 0.00 0.00 0.00 2.69
3207 3325 3.664107 TCTCATTTCGGACCTGTTTCAG 58.336 45.455 0.00 0.00 0.00 3.02
3208 3326 3.071023 TCTCATTTCGGACCTGTTTCAGT 59.929 43.478 0.00 0.00 0.00 3.41
3209 3327 4.282449 TCTCATTTCGGACCTGTTTCAGTA 59.718 41.667 0.00 0.00 0.00 2.74
3241 3359 6.070767 AGGCTTCAGCTCTGTATTTTGTACTA 60.071 38.462 0.00 0.00 41.70 1.82
3242 3360 6.036191 GGCTTCAGCTCTGTATTTTGTACTAC 59.964 42.308 0.00 0.00 41.70 2.73
3243 3361 6.814146 GCTTCAGCTCTGTATTTTGTACTACT 59.186 38.462 0.00 0.00 38.21 2.57
3244 3362 7.974501 GCTTCAGCTCTGTATTTTGTACTACTA 59.025 37.037 0.00 0.00 38.21 1.82
3245 3363 9.291664 CTTCAGCTCTGTATTTTGTACTACTAC 57.708 37.037 0.00 0.00 0.00 2.73
3246 3364 8.344446 TCAGCTCTGTATTTTGTACTACTACA 57.656 34.615 0.00 0.00 0.00 2.74
3248 3366 9.077674 CAGCTCTGTATTTTGTACTACTACAAG 57.922 37.037 0.00 1.11 42.56 3.16
3250 3368 7.760340 GCTCTGTATTTTGTACTACTACAAGCT 59.240 37.037 15.52 0.00 42.56 3.74
3251 3369 9.640963 CTCTGTATTTTGTACTACTACAAGCTT 57.359 33.333 0.00 0.00 42.56 3.74
3264 3465 1.560146 ACAAGCTTAGTTAGGGGCCTC 59.440 52.381 0.84 0.00 0.00 4.70
3271 3472 1.690985 GTTAGGGGCCTCCAGCTCT 60.691 63.158 0.00 0.00 43.87 4.09
3272 3473 0.398664 GTTAGGGGCCTCCAGCTCTA 60.399 60.000 0.00 0.00 43.87 2.43
3286 3487 7.546358 CCTCCAGCTCTATATATTTCAGACAG 58.454 42.308 0.00 0.00 0.00 3.51
3323 3524 6.542852 GCGTCAGCTTTATATTTTCAGACAA 58.457 36.000 0.00 0.00 41.01 3.18
3324 3525 6.684555 GCGTCAGCTTTATATTTTCAGACAAG 59.315 38.462 0.00 0.00 41.01 3.16
3325 3526 6.684555 CGTCAGCTTTATATTTTCAGACAAGC 59.315 38.462 0.00 0.00 36.27 4.01
3336 3537 2.621338 TCAGACAAGCTTGATTAGGCG 58.379 47.619 32.50 12.72 0.00 5.52
3340 3541 0.652592 CAAGCTTGATTAGGCGTCGG 59.347 55.000 22.31 0.00 0.00 4.79
3346 3547 3.859627 GCTTGATTAGGCGTCGGCTATAA 60.860 47.826 26.79 16.71 40.30 0.98
3407 3647 3.118261 AGCACCTATGGTCATAAGTGGTG 60.118 47.826 18.07 17.45 41.89 4.17
3408 3648 3.808728 CACCTATGGTCATAAGTGGTGG 58.191 50.000 14.86 5.55 35.32 4.61
3409 3649 3.199946 CACCTATGGTCATAAGTGGTGGT 59.800 47.826 14.86 6.01 35.32 4.16
3412 3652 3.560636 ATGGTCATAAGTGGTGGTAGC 57.439 47.619 0.00 0.00 0.00 3.58
3450 3696 5.927030 TGTCGTTAGAGCAGCTTAATTTTG 58.073 37.500 0.00 0.00 0.00 2.44
3454 3700 7.059602 GTCGTTAGAGCAGCTTAATTTTGTTTC 59.940 37.037 0.00 0.00 0.00 2.78
3456 3702 7.378461 CGTTAGAGCAGCTTAATTTTGTTTCAA 59.622 33.333 0.00 0.00 0.00 2.69
3458 3704 7.647907 AGAGCAGCTTAATTTTGTTTCAATG 57.352 32.000 0.00 0.00 0.00 2.82
3490 3737 8.979534 GGGTAGCTTAATTATAGGCAGTACTAT 58.020 37.037 0.00 0.00 36.63 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.452470 TCCCCGCCGGAAAAATAGC 60.452 57.895 5.05 0.00 37.88 2.97
1 2 4.968370 TCCCCGCCGGAAAAATAG 57.032 55.556 5.05 0.00 37.88 1.73
9 10 3.901797 GATAGCCATTCCCCGCCGG 62.902 68.421 0.00 0.00 0.00 6.13
10 11 1.541310 TAGATAGCCATTCCCCGCCG 61.541 60.000 0.00 0.00 0.00 6.46
11 12 0.036294 GTAGATAGCCATTCCCCGCC 60.036 60.000 0.00 0.00 0.00 6.13
12 13 0.036294 GGTAGATAGCCATTCCCCGC 60.036 60.000 0.00 0.00 0.00 6.13
13 14 0.246635 CGGTAGATAGCCATTCCCCG 59.753 60.000 0.00 0.00 0.00 5.73
14 15 0.613777 CCGGTAGATAGCCATTCCCC 59.386 60.000 0.00 0.00 0.00 4.81
15 16 1.002087 CACCGGTAGATAGCCATTCCC 59.998 57.143 6.87 0.00 0.00 3.97
16 17 1.968493 TCACCGGTAGATAGCCATTCC 59.032 52.381 6.87 0.00 0.00 3.01
17 18 3.555168 CCTTCACCGGTAGATAGCCATTC 60.555 52.174 6.87 0.00 0.00 2.67
18 19 2.368875 CCTTCACCGGTAGATAGCCATT 59.631 50.000 6.87 0.00 0.00 3.16
19 20 1.971357 CCTTCACCGGTAGATAGCCAT 59.029 52.381 6.87 0.00 0.00 4.40
20 21 1.410004 CCTTCACCGGTAGATAGCCA 58.590 55.000 6.87 0.00 0.00 4.75
21 22 0.680061 CCCTTCACCGGTAGATAGCC 59.320 60.000 6.87 0.00 0.00 3.93
22 23 0.033642 GCCCTTCACCGGTAGATAGC 59.966 60.000 6.87 4.29 0.00 2.97
23 24 0.314302 CGCCCTTCACCGGTAGATAG 59.686 60.000 6.87 1.83 0.00 2.08
24 25 1.111116 CCGCCCTTCACCGGTAGATA 61.111 60.000 6.87 0.00 39.67 1.98
25 26 2.432300 CCGCCCTTCACCGGTAGAT 61.432 63.158 6.87 0.00 39.67 1.98
26 27 3.072468 CCGCCCTTCACCGGTAGA 61.072 66.667 6.87 4.45 39.67 2.59
27 28 4.832608 GCCGCCCTTCACCGGTAG 62.833 72.222 6.87 0.89 45.98 3.18
49 50 2.001361 CTAGGTATATCCCGGCGCCG 62.001 65.000 41.00 41.00 36.75 6.46
50 51 0.969409 ACTAGGTATATCCCGGCGCC 60.969 60.000 19.07 19.07 36.75 6.53
51 52 0.172803 CACTAGGTATATCCCGGCGC 59.827 60.000 0.00 0.00 36.75 6.53
52 53 0.815734 CCACTAGGTATATCCCGGCG 59.184 60.000 0.00 0.00 36.75 6.46
53 54 0.535797 GCCACTAGGTATATCCCGGC 59.464 60.000 0.00 0.00 37.19 6.13
54 55 0.815734 CGCCACTAGGTATATCCCGG 59.184 60.000 0.00 0.00 37.19 5.73
55 56 0.815734 CCGCCACTAGGTATATCCCG 59.184 60.000 0.00 0.00 37.19 5.14
56 57 0.535797 GCCGCCACTAGGTATATCCC 59.464 60.000 0.00 0.00 37.19 3.85
57 58 0.535797 GGCCGCCACTAGGTATATCC 59.464 60.000 3.91 0.00 37.19 2.59
58 59 0.172803 CGGCCGCCACTAGGTATATC 59.827 60.000 14.67 0.00 37.19 1.63
59 60 0.251474 TCGGCCGCCACTAGGTATAT 60.251 55.000 23.51 0.00 37.19 0.86
60 61 0.892358 CTCGGCCGCCACTAGGTATA 60.892 60.000 23.51 0.00 37.19 1.47
61 62 2.123597 TCGGCCGCCACTAGGTAT 60.124 61.111 23.51 0.00 37.19 2.73
62 63 2.831742 CTCGGCCGCCACTAGGTA 60.832 66.667 23.51 0.00 37.19 3.08
63 64 4.753662 TCTCGGCCGCCACTAGGT 62.754 66.667 23.51 0.00 37.19 3.08
64 65 3.905678 CTCTCGGCCGCCACTAGG 61.906 72.222 23.51 2.59 38.23 3.02
65 66 4.577246 GCTCTCGGCCGCCACTAG 62.577 72.222 23.51 12.95 34.27 2.57
93 94 3.839432 CTTCCCCGACTCGCCTCC 61.839 72.222 0.00 0.00 0.00 4.30
94 95 1.885163 TTTCTTCCCCGACTCGCCTC 61.885 60.000 0.00 0.00 0.00 4.70
95 96 1.477685 TTTTCTTCCCCGACTCGCCT 61.478 55.000 0.00 0.00 0.00 5.52
96 97 0.392595 ATTTTCTTCCCCGACTCGCC 60.393 55.000 0.00 0.00 0.00 5.54
97 98 1.007580 GATTTTCTTCCCCGACTCGC 58.992 55.000 0.00 0.00 0.00 5.03
98 99 2.673368 CAAGATTTTCTTCCCCGACTCG 59.327 50.000 0.00 0.00 33.78 4.18
99 100 3.685272 GTCAAGATTTTCTTCCCCGACTC 59.315 47.826 0.00 0.00 33.78 3.36
100 101 3.328050 AGTCAAGATTTTCTTCCCCGACT 59.672 43.478 0.00 0.00 33.78 4.18
101 102 3.676093 AGTCAAGATTTTCTTCCCCGAC 58.324 45.455 0.00 0.00 33.78 4.79
102 103 4.367039 AAGTCAAGATTTTCTTCCCCGA 57.633 40.909 0.00 0.00 33.78 5.14
103 104 5.009610 TGAAAAGTCAAGATTTTCTTCCCCG 59.990 40.000 11.23 0.00 43.74 5.73
104 105 6.216569 GTGAAAAGTCAAGATTTTCTTCCCC 58.783 40.000 11.23 0.00 43.74 4.81
105 106 6.040955 AGGTGAAAAGTCAAGATTTTCTTCCC 59.959 38.462 11.23 8.78 43.74 3.97
106 107 6.920210 CAGGTGAAAAGTCAAGATTTTCTTCC 59.080 38.462 11.23 12.23 43.74 3.46
107 108 7.645735 GTCAGGTGAAAAGTCAAGATTTTCTTC 59.354 37.037 11.23 5.88 43.74 2.87
108 109 7.484140 GTCAGGTGAAAAGTCAAGATTTTCTT 58.516 34.615 11.23 0.00 43.74 2.52
109 110 6.238484 CGTCAGGTGAAAAGTCAAGATTTTCT 60.238 38.462 11.23 0.00 43.74 2.52
110 111 5.909610 CGTCAGGTGAAAAGTCAAGATTTTC 59.090 40.000 4.61 4.61 43.69 2.29
111 112 5.221048 CCGTCAGGTGAAAAGTCAAGATTTT 60.221 40.000 0.00 0.00 34.87 1.82
112 113 4.275936 CCGTCAGGTGAAAAGTCAAGATTT 59.724 41.667 0.00 0.00 34.87 2.17
113 114 3.815401 CCGTCAGGTGAAAAGTCAAGATT 59.185 43.478 0.00 0.00 34.87 2.40
114 115 3.403038 CCGTCAGGTGAAAAGTCAAGAT 58.597 45.455 0.00 0.00 34.87 2.40
115 116 2.833794 CCGTCAGGTGAAAAGTCAAGA 58.166 47.619 0.00 0.00 34.87 3.02
116 117 1.264288 GCCGTCAGGTGAAAAGTCAAG 59.736 52.381 0.00 0.00 40.50 3.02
117 118 1.305201 GCCGTCAGGTGAAAAGTCAA 58.695 50.000 0.00 0.00 40.50 3.18
118 119 3.000815 GCCGTCAGGTGAAAAGTCA 57.999 52.632 0.00 0.00 40.50 3.41
138 139 4.912395 AAAAGTGCGGCTGGCCCA 62.912 61.111 0.00 2.63 42.61 5.36
139 140 4.056125 GAAAAGTGCGGCTGGCCC 62.056 66.667 0.00 0.00 42.61 5.80
140 141 4.056125 GGAAAAGTGCGGCTGGCC 62.056 66.667 0.00 0.00 42.61 5.36
141 142 4.056125 GGGAAAAGTGCGGCTGGC 62.056 66.667 0.00 0.00 43.96 4.85
142 143 1.903404 AAGGGAAAAGTGCGGCTGG 60.903 57.895 0.00 0.00 0.00 4.85
143 144 1.286880 CAAGGGAAAAGTGCGGCTG 59.713 57.895 0.00 0.00 0.00 4.85
144 145 2.564721 GCAAGGGAAAAGTGCGGCT 61.565 57.895 0.00 0.00 0.00 5.52
145 146 2.049156 GCAAGGGAAAAGTGCGGC 60.049 61.111 0.00 0.00 0.00 6.53
148 149 2.049156 GGCGCAAGGGAAAAGTGC 60.049 61.111 10.83 0.00 38.01 4.40
149 150 2.255252 CGGCGCAAGGGAAAAGTG 59.745 61.111 10.83 0.00 38.28 3.16
150 151 2.983592 CCGGCGCAAGGGAAAAGT 60.984 61.111 10.83 0.00 38.28 2.66
151 152 2.671619 TCCGGCGCAAGGGAAAAG 60.672 61.111 19.03 0.00 38.28 2.27
152 153 2.671619 CTCCGGCGCAAGGGAAAA 60.672 61.111 19.03 1.39 38.28 2.29
221 222 2.561037 CGCCGGTTCTGCCCTTTTT 61.561 57.895 1.90 0.00 0.00 1.94
222 223 2.983592 CGCCGGTTCTGCCCTTTT 60.984 61.111 1.90 0.00 0.00 2.27
227 228 3.610791 GAAAAGCGCCGGTTCTGCC 62.611 63.158 2.29 0.00 0.00 4.85
228 229 2.126850 GAAAAGCGCCGGTTCTGC 60.127 61.111 2.29 2.27 0.00 4.26
229 230 2.173382 CGAAAAGCGCCGGTTCTG 59.827 61.111 2.29 0.00 0.00 3.02
230 231 2.280592 ACGAAAAGCGCCGGTTCT 60.281 55.556 2.29 0.00 46.04 3.01
231 232 1.908066 ATGACGAAAAGCGCCGGTTC 61.908 55.000 2.29 4.36 46.04 3.62
232 233 1.908066 GATGACGAAAAGCGCCGGTT 61.908 55.000 2.29 0.00 46.04 4.44
233 234 2.358247 ATGACGAAAAGCGCCGGT 60.358 55.556 2.29 0.00 46.04 5.28
234 235 2.399611 GATGACGAAAAGCGCCGG 59.600 61.111 2.29 0.00 46.04 6.13
235 236 2.100631 AGGATGACGAAAAGCGCCG 61.101 57.895 2.29 2.21 46.04 6.46
236 237 1.019278 TCAGGATGACGAAAAGCGCC 61.019 55.000 2.29 0.00 42.56 6.53
237 238 0.371645 CTCAGGATGACGAAAAGCGC 59.628 55.000 0.00 0.00 42.56 5.92
238 239 1.996292 TCTCAGGATGACGAAAAGCG 58.004 50.000 0.00 0.00 42.56 4.68
249 250 0.749649 GTCCAGTCGCATCTCAGGAT 59.250 55.000 0.00 0.00 0.00 3.24
250 251 0.323816 AGTCCAGTCGCATCTCAGGA 60.324 55.000 0.00 0.00 0.00 3.86
251 252 0.534412 AAGTCCAGTCGCATCTCAGG 59.466 55.000 0.00 0.00 0.00 3.86
252 253 2.376808 AAAGTCCAGTCGCATCTCAG 57.623 50.000 0.00 0.00 0.00 3.35
253 254 2.839486 AAAAGTCCAGTCGCATCTCA 57.161 45.000 0.00 0.00 0.00 3.27
271 272 4.320928 CGGCGCTGGCGTCAAAAA 62.321 61.111 19.15 0.00 45.18 1.94
279 280 2.126850 GACTTTTTCGGCGCTGGC 60.127 61.111 17.88 0.00 38.90 4.85
280 281 2.173382 CGACTTTTTCGGCGCTGG 59.827 61.111 17.88 4.31 44.60 4.85
327 328 0.102481 TCCGCCGAACTAAGAGCATC 59.898 55.000 0.00 0.00 0.00 3.91
328 329 0.179108 GTCCGCCGAACTAAGAGCAT 60.179 55.000 0.00 0.00 0.00 3.79
329 330 1.214589 GTCCGCCGAACTAAGAGCA 59.785 57.895 0.00 0.00 0.00 4.26
330 331 1.872679 CGTCCGCCGAACTAAGAGC 60.873 63.158 0.00 0.00 39.56 4.09
331 332 1.872679 GCGTCCGCCGAACTAAGAG 60.873 63.158 0.00 0.00 39.56 2.85
406 407 3.368190 CTCAGGAGGAGCACGCTGG 62.368 68.421 0.00 0.00 36.69 4.85
407 408 2.183811 CTCAGGAGGAGCACGCTG 59.816 66.667 0.00 0.00 36.69 5.18
414 415 2.187424 GCTGCAGCTCAGGAGGAG 59.813 66.667 31.33 0.00 46.93 3.69
415 416 2.605601 TGCTGCAGCTCAGGAGGA 60.606 61.111 36.61 13.65 43.06 3.71
416 417 2.436292 GTGCTGCAGCTCAGGAGG 60.436 66.667 36.61 0.00 44.06 4.30
417 418 2.814341 CGTGCTGCAGCTCAGGAG 60.814 66.667 36.61 17.91 44.06 3.69
427 428 2.359230 AAGAGAAGGGCGTGCTGC 60.359 61.111 0.00 0.00 45.38 5.25
428 429 1.004560 TGAAGAGAAGGGCGTGCTG 60.005 57.895 0.00 0.00 0.00 4.41
429 430 1.004440 GTGAAGAGAAGGGCGTGCT 60.004 57.895 0.00 0.00 0.00 4.40
430 431 0.603975 AAGTGAAGAGAAGGGCGTGC 60.604 55.000 0.00 0.00 0.00 5.34
431 432 1.270305 TGAAGTGAAGAGAAGGGCGTG 60.270 52.381 0.00 0.00 0.00 5.34
432 433 1.048601 TGAAGTGAAGAGAAGGGCGT 58.951 50.000 0.00 0.00 0.00 5.68
433 434 1.270305 TGTGAAGTGAAGAGAAGGGCG 60.270 52.381 0.00 0.00 0.00 6.13
434 435 2.147150 GTGTGAAGTGAAGAGAAGGGC 58.853 52.381 0.00 0.00 0.00 5.19
435 436 2.772287 GGTGTGAAGTGAAGAGAAGGG 58.228 52.381 0.00 0.00 0.00 3.95
436 437 2.035961 TCGGTGTGAAGTGAAGAGAAGG 59.964 50.000 0.00 0.00 0.00 3.46
437 438 3.053455 GTCGGTGTGAAGTGAAGAGAAG 58.947 50.000 0.00 0.00 0.00 2.85
438 439 2.429250 TGTCGGTGTGAAGTGAAGAGAA 59.571 45.455 0.00 0.00 0.00 2.87
439 440 2.028876 TGTCGGTGTGAAGTGAAGAGA 58.971 47.619 0.00 0.00 0.00 3.10
440 441 2.398498 CTGTCGGTGTGAAGTGAAGAG 58.602 52.381 0.00 0.00 0.00 2.85
441 442 1.538204 GCTGTCGGTGTGAAGTGAAGA 60.538 52.381 0.00 0.00 0.00 2.87
442 443 0.861837 GCTGTCGGTGTGAAGTGAAG 59.138 55.000 0.00 0.00 0.00 3.02
443 444 0.464036 AGCTGTCGGTGTGAAGTGAA 59.536 50.000 0.00 0.00 0.00 3.18
444 445 0.249447 CAGCTGTCGGTGTGAAGTGA 60.249 55.000 5.25 0.00 34.04 3.41
445 446 1.835483 GCAGCTGTCGGTGTGAAGTG 61.835 60.000 16.64 0.00 40.67 3.16
446 447 1.595382 GCAGCTGTCGGTGTGAAGT 60.595 57.895 16.64 0.00 40.67 3.01
447 448 2.320587 GGCAGCTGTCGGTGTGAAG 61.321 63.158 16.64 0.00 40.67 3.02
448 449 2.280797 GGCAGCTGTCGGTGTGAA 60.281 61.111 16.64 0.00 40.67 3.18
449 450 3.226429 GAGGCAGCTGTCGGTGTGA 62.226 63.158 16.64 0.00 40.67 3.58
450 451 2.721971 AAGAGGCAGCTGTCGGTGTG 62.722 60.000 16.64 0.00 40.67 3.82
451 452 2.511452 AAGAGGCAGCTGTCGGTGT 61.511 57.895 16.64 0.00 40.67 4.16
452 453 2.031516 CAAGAGGCAGCTGTCGGTG 61.032 63.158 16.64 9.94 41.47 4.94
453 454 2.345244 CAAGAGGCAGCTGTCGGT 59.655 61.111 16.64 2.11 0.00 4.69
454 455 3.123620 GCAAGAGGCAGCTGTCGG 61.124 66.667 16.64 6.77 43.97 4.79
464 465 0.590195 GTGCTGTCACTTGCAAGAGG 59.410 55.000 32.50 22.19 41.10 3.69
466 467 1.775039 GCGTGCTGTCACTTGCAAGA 61.775 55.000 32.50 9.03 41.10 3.02
482 483 2.501222 GATCACGACACGACGCGT 60.501 61.111 13.85 13.85 42.36 6.01
483 484 2.868520 TACGATCACGACACGACGCG 62.869 60.000 3.53 3.53 42.66 6.01
484 485 0.790495 TTACGATCACGACACGACGC 60.790 55.000 0.00 0.00 42.66 5.19
487 488 4.403015 TTTACTTACGATCACGACACGA 57.597 40.909 0.00 0.00 42.66 4.35
488 489 4.789629 TCATTTACTTACGATCACGACACG 59.210 41.667 0.00 0.00 42.66 4.49
492 493 5.823209 TCCTCATTTACTTACGATCACGA 57.177 39.130 0.00 0.00 42.66 4.35
493 494 6.196724 GTCTTCCTCATTTACTTACGATCACG 59.803 42.308 0.00 0.00 45.75 4.35
498 499 5.048504 ACACGTCTTCCTCATTTACTTACGA 60.049 40.000 0.00 0.00 0.00 3.43
499 500 5.159209 ACACGTCTTCCTCATTTACTTACG 58.841 41.667 0.00 0.00 0.00 3.18
500 501 7.170320 TGAAACACGTCTTCCTCATTTACTTAC 59.830 37.037 4.82 0.00 0.00 2.34
501 502 7.211573 TGAAACACGTCTTCCTCATTTACTTA 58.788 34.615 4.82 0.00 0.00 2.24
504 505 5.694910 TCTGAAACACGTCTTCCTCATTTAC 59.305 40.000 4.82 0.00 0.00 2.01
506 507 4.511826 GTCTGAAACACGTCTTCCTCATTT 59.488 41.667 4.82 0.00 0.00 2.32
507 508 4.058817 GTCTGAAACACGTCTTCCTCATT 58.941 43.478 4.82 0.00 0.00 2.57
508 509 3.069586 TGTCTGAAACACGTCTTCCTCAT 59.930 43.478 4.82 0.00 31.20 2.90
509 510 2.429250 TGTCTGAAACACGTCTTCCTCA 59.571 45.455 4.82 0.00 31.20 3.86
510 511 3.053455 CTGTCTGAAACACGTCTTCCTC 58.947 50.000 4.82 0.00 33.24 3.71
511 512 2.693591 TCTGTCTGAAACACGTCTTCCT 59.306 45.455 4.82 0.00 33.24 3.36
512 513 2.795470 GTCTGTCTGAAACACGTCTTCC 59.205 50.000 4.82 0.00 33.24 3.46
513 514 3.444916 TGTCTGTCTGAAACACGTCTTC 58.555 45.455 0.00 0.00 33.24 2.87
514 515 3.520290 TGTCTGTCTGAAACACGTCTT 57.480 42.857 0.00 0.00 33.24 3.01
515 516 3.735237 ATGTCTGTCTGAAACACGTCT 57.265 42.857 0.00 0.00 33.24 4.18
516 517 3.802139 TCAATGTCTGTCTGAAACACGTC 59.198 43.478 0.00 0.00 33.24 4.34
517 518 3.555956 GTCAATGTCTGTCTGAAACACGT 59.444 43.478 0.00 0.00 33.24 4.49
518 519 3.362014 CGTCAATGTCTGTCTGAAACACG 60.362 47.826 0.00 0.00 33.24 4.49
536 537 3.469863 AACTTCCAAGGCCGCGTCA 62.470 57.895 4.92 0.00 0.00 4.35
561 562 0.941463 ACACTCGCGCTCTGAAACAG 60.941 55.000 5.56 0.00 0.00 3.16
580 581 5.698089 GCTCGTCAGGATATTCATCATTTCA 59.302 40.000 0.00 0.00 32.32 2.69
586 587 4.803088 GCTATGCTCGTCAGGATATTCATC 59.197 45.833 0.00 0.00 32.85 2.92
588 589 3.573967 TGCTATGCTCGTCAGGATATTCA 59.426 43.478 0.00 0.00 32.85 2.57
589 590 4.172505 CTGCTATGCTCGTCAGGATATTC 58.827 47.826 0.00 0.00 32.85 1.75
591 592 2.495270 CCTGCTATGCTCGTCAGGATAT 59.505 50.000 9.13 0.00 46.80 1.63
592 593 1.889170 CCTGCTATGCTCGTCAGGATA 59.111 52.381 9.13 0.00 46.80 2.59
593 594 0.678395 CCTGCTATGCTCGTCAGGAT 59.322 55.000 9.13 0.00 46.80 3.24
594 595 2.119009 CCTGCTATGCTCGTCAGGA 58.881 57.895 9.13 0.00 46.80 3.86
596 597 1.850377 CTTCCTGCTATGCTCGTCAG 58.150 55.000 0.00 0.00 0.00 3.51
597 598 0.179100 GCTTCCTGCTATGCTCGTCA 60.179 55.000 0.00 0.00 38.95 4.35
598 599 2.599216 GCTTCCTGCTATGCTCGTC 58.401 57.895 0.00 0.00 38.95 4.20
599 600 4.844420 GCTTCCTGCTATGCTCGT 57.156 55.556 0.00 0.00 38.95 4.18
613 625 0.321653 CGCCCACTCAGGTAAAGCTT 60.322 55.000 0.00 0.00 34.66 3.74
621 633 3.320879 ATGCAGTCGCCCACTCAGG 62.321 63.158 0.00 0.00 37.32 3.86
676 688 2.042404 TAACGACCCACTGGCCGTTT 62.042 55.000 22.90 12.61 39.58 3.60
707 719 4.363990 AGCAGTGACGCTGGACCG 62.364 66.667 17.42 0.00 45.14 4.79
757 787 1.886585 CTCGACCTGACCTGACCTG 59.113 63.158 0.00 0.00 0.00 4.00
758 788 1.979693 GCTCGACCTGACCTGACCT 60.980 63.158 0.00 0.00 0.00 3.85
759 789 2.574399 GCTCGACCTGACCTGACC 59.426 66.667 0.00 0.00 0.00 4.02
760 790 2.276116 TGGCTCGACCTGACCTGAC 61.276 63.158 5.77 0.00 40.22 3.51
761 791 2.117423 TGGCTCGACCTGACCTGA 59.883 61.111 5.77 0.00 40.22 3.86
857 891 4.240103 TGGAGGCGATGGCGATGG 62.240 66.667 0.00 0.00 41.24 3.51
971 1018 2.593956 GGTGGAGGTGGTGGAGGTC 61.594 68.421 0.00 0.00 0.00 3.85
1184 1237 3.099438 CATCAGCCGAGCAAGCAG 58.901 61.111 0.00 0.00 0.00 4.24
1212 1265 3.414700 GCACACCGGTCGAGCAAG 61.415 66.667 15.89 7.76 0.00 4.01
1702 1760 0.037326 GATGTCCGTGAGCAGGAACA 60.037 55.000 0.00 0.00 39.84 3.18
2491 2559 4.787280 AGTGCGAGGAGGGGGAGG 62.787 72.222 0.00 0.00 0.00 4.30
2492 2560 3.465403 CAGTGCGAGGAGGGGGAG 61.465 72.222 0.00 0.00 0.00 4.30
2493 2561 3.992641 TCAGTGCGAGGAGGGGGA 61.993 66.667 0.00 0.00 0.00 4.81
2494 2562 3.775654 GTCAGTGCGAGGAGGGGG 61.776 72.222 0.00 0.00 0.00 5.40
2495 2563 2.997315 TGTCAGTGCGAGGAGGGG 60.997 66.667 0.00 0.00 0.00 4.79
2514 2582 2.047465 AGGTGCAAGCAGAGCTCG 60.047 61.111 8.37 4.60 38.25 5.03
2573 2641 4.624913 AGAGAGAGAGAGAGAGAGAGGAA 58.375 47.826 0.00 0.00 0.00 3.36
2576 2644 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2577 2645 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2578 2646 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2579 2647 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2580 2648 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2581 2649 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2582 2650 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2583 2651 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2584 2652 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2585 2653 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2586 2654 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2587 2655 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2588 2656 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2589 2657 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2590 2658 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2591 2659 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2592 2660 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2593 2661 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2594 2662 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2595 2663 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
2685 2753 9.389755 TCCTTTACCAAAATGAAAAAGAAAAGG 57.610 29.630 0.00 0.00 40.23 3.11
2779 2847 2.083774 TGCTGGGACAATCAATCGAAC 58.916 47.619 0.00 0.00 38.70 3.95
2869 2937 5.468746 GTCTCTGATGGTAGTAGAGTAGCAG 59.531 48.000 0.00 0.00 39.14 4.24
2870 2938 5.104485 TGTCTCTGATGGTAGTAGAGTAGCA 60.104 44.000 0.00 0.00 39.14 3.49
2871 2939 5.369833 TGTCTCTGATGGTAGTAGAGTAGC 58.630 45.833 0.00 0.00 39.14 3.58
2881 2949 1.764723 CATGCCCTGTCTCTGATGGTA 59.235 52.381 0.00 0.00 0.00 3.25
2906 2974 4.458295 CCAGAGAAGCATCACACTCAATTT 59.542 41.667 0.00 0.00 32.59 1.82
2924 2992 0.607489 CAGCCAGTTTGGGACCAGAG 60.607 60.000 0.00 0.00 38.19 3.35
2957 3025 2.289882 CCAGTGCTGTTGAGAATGAGGA 60.290 50.000 0.00 0.00 0.00 3.71
2977 3045 1.542108 GCATATGTGCCCTCTGAGACC 60.542 57.143 6.17 0.00 45.76 3.85
2986 3054 7.453729 GTCAGGATTGAAAGCATATGTGCCC 62.454 48.000 11.21 3.26 43.01 5.36
2987 3055 4.498682 GTCAGGATTGAAAGCATATGTGCC 60.499 45.833 11.21 0.00 43.01 5.01
2988 3056 4.498682 GGTCAGGATTGAAAGCATATGTGC 60.499 45.833 6.28 6.28 42.63 4.57
2989 3057 4.641541 TGGTCAGGATTGAAAGCATATGTG 59.358 41.667 4.29 0.00 34.49 3.21
2990 3058 4.858850 TGGTCAGGATTGAAAGCATATGT 58.141 39.130 4.29 0.00 34.49 2.29
2991 3059 4.885907 ACTGGTCAGGATTGAAAGCATATG 59.114 41.667 0.00 0.00 34.49 1.78
2992 3060 5.121380 ACTGGTCAGGATTGAAAGCATAT 57.879 39.130 2.87 0.00 34.49 1.78
2993 3061 4.574674 ACTGGTCAGGATTGAAAGCATA 57.425 40.909 2.87 0.00 34.49 3.14
3005 3073 1.376037 GCCTCCGAAACTGGTCAGG 60.376 63.158 2.87 0.00 0.00 3.86
3026 3094 7.926018 ACTTGTCCAAAACATAAAAAGTGGATC 59.074 33.333 0.00 0.00 37.48 3.36
3028 3096 7.176589 ACTTGTCCAAAACATAAAAAGTGGA 57.823 32.000 0.00 0.00 37.82 4.02
3031 3099 9.594478 CCTAAACTTGTCCAAAACATAAAAAGT 57.406 29.630 0.00 0.00 37.82 2.66
3032 3100 9.810545 TCCTAAACTTGTCCAAAACATAAAAAG 57.189 29.630 0.00 0.00 37.82 2.27
3037 3105 7.094975 CGACATCCTAAACTTGTCCAAAACATA 60.095 37.037 0.00 0.00 37.82 2.29
3049 3118 6.377712 AGCTACTCTAACGACATCCTAAACTT 59.622 38.462 0.00 0.00 0.00 2.66
3054 3123 5.191426 ACAAGCTACTCTAACGACATCCTA 58.809 41.667 0.00 0.00 0.00 2.94
3058 3127 4.202030 GGCTACAAGCTACTCTAACGACAT 60.202 45.833 0.00 0.00 41.99 3.06
3059 3128 3.128242 GGCTACAAGCTACTCTAACGACA 59.872 47.826 0.00 0.00 41.99 4.35
3066 3182 2.952116 CCCTAGGCTACAAGCTACTCT 58.048 52.381 2.05 0.00 41.99 3.24
3097 3213 0.321298 GGGCTTCTGTTCTGCCGTAA 60.321 55.000 0.00 0.00 46.97 3.18
3099 3215 2.032681 GGGCTTCTGTTCTGCCGT 59.967 61.111 0.00 0.00 46.97 5.68
3100 3216 2.037136 CAGGGCTTCTGTTCTGCCG 61.037 63.158 0.00 0.00 46.97 5.69
3101 3217 3.993535 CAGGGCTTCTGTTCTGCC 58.006 61.111 0.00 0.00 45.42 4.85
3127 3245 0.902531 AGATAACCTCGGGTGTGGTG 59.097 55.000 0.00 0.00 41.01 4.17
3128 3246 0.902531 CAGATAACCTCGGGTGTGGT 59.097 55.000 0.00 0.00 43.66 4.16
3129 3247 1.191535 TCAGATAACCTCGGGTGTGG 58.808 55.000 0.00 0.00 35.34 4.17
3162 3280 3.063670 TGTGTGTGAAATGTTGCGAAG 57.936 42.857 0.00 0.00 0.00 3.79
3177 3295 2.932614 GTCCGAAATGAGAGGATGTGTG 59.067 50.000 0.00 0.00 36.34 3.82
3181 3299 2.169352 ACAGGTCCGAAATGAGAGGATG 59.831 50.000 0.00 0.00 36.34 3.51
3184 3302 2.770164 AACAGGTCCGAAATGAGAGG 57.230 50.000 0.00 0.00 0.00 3.69
3187 3305 3.403038 ACTGAAACAGGTCCGAAATGAG 58.597 45.455 0.00 0.00 35.51 2.90
3194 3312 4.566004 TCTGAAATACTGAAACAGGTCCG 58.434 43.478 0.00 0.00 35.51 4.79
3200 3318 5.620206 TGAAGCCTCTGAAATACTGAAACA 58.380 37.500 0.00 0.00 0.00 2.83
3202 3320 4.697352 GCTGAAGCCTCTGAAATACTGAAA 59.303 41.667 0.00 0.00 34.31 2.69
3203 3321 4.019860 AGCTGAAGCCTCTGAAATACTGAA 60.020 41.667 0.00 0.00 43.38 3.02
3204 3322 3.517100 AGCTGAAGCCTCTGAAATACTGA 59.483 43.478 0.00 0.00 43.38 3.41
3205 3323 3.870419 GAGCTGAAGCCTCTGAAATACTG 59.130 47.826 0.00 0.00 43.38 2.74
3206 3324 3.774216 AGAGCTGAAGCCTCTGAAATACT 59.226 43.478 0.00 0.00 43.38 2.12
3207 3325 3.870419 CAGAGCTGAAGCCTCTGAAATAC 59.130 47.826 18.87 0.00 42.97 1.89
3208 3326 3.517100 ACAGAGCTGAAGCCTCTGAAATA 59.483 43.478 25.30 0.00 42.97 1.40
3209 3327 2.305343 ACAGAGCTGAAGCCTCTGAAAT 59.695 45.455 25.30 10.66 42.97 2.17
3241 3359 2.504585 GGCCCCTAACTAAGCTTGTAGT 59.495 50.000 9.86 2.08 35.80 2.73
3242 3360 2.772515 AGGCCCCTAACTAAGCTTGTAG 59.227 50.000 9.86 7.83 0.00 2.74
3243 3361 2.770232 GAGGCCCCTAACTAAGCTTGTA 59.230 50.000 9.86 0.00 0.00 2.41
3244 3362 1.560146 GAGGCCCCTAACTAAGCTTGT 59.440 52.381 9.86 2.27 0.00 3.16
3245 3363 1.134068 GGAGGCCCCTAACTAAGCTTG 60.134 57.143 9.86 1.57 0.00 4.01
3246 3364 1.214217 GGAGGCCCCTAACTAAGCTT 58.786 55.000 3.48 3.48 0.00 3.74
3248 3366 0.470341 CTGGAGGCCCCTAACTAAGC 59.530 60.000 0.00 0.00 35.38 3.09
3250 3368 0.044244 AGCTGGAGGCCCCTAACTAA 59.956 55.000 0.00 0.00 43.05 2.24
3251 3369 0.398664 GAGCTGGAGGCCCCTAACTA 60.399 60.000 0.00 0.00 43.05 2.24
3252 3370 1.690985 GAGCTGGAGGCCCCTAACT 60.691 63.158 0.00 0.00 43.05 2.24
3253 3371 0.398664 TAGAGCTGGAGGCCCCTAAC 60.399 60.000 0.00 0.00 43.05 2.34
3264 3465 7.238486 ACCTGTCTGAAATATATAGAGCTGG 57.762 40.000 0.00 0.00 0.00 4.85
3286 3487 3.532542 AGCTGACGCTCCTAATTAAACC 58.467 45.455 0.00 0.00 45.15 3.27
3316 3517 2.028112 ACGCCTAATCAAGCTTGTCTGA 60.028 45.455 25.19 7.35 0.00 3.27
3317 3518 2.349886 GACGCCTAATCAAGCTTGTCTG 59.650 50.000 25.19 13.70 0.00 3.51
3318 3519 2.622436 GACGCCTAATCAAGCTTGTCT 58.378 47.619 25.19 15.72 0.00 3.41
3319 3520 1.324736 CGACGCCTAATCAAGCTTGTC 59.675 52.381 25.19 12.11 0.00 3.18
3320 3521 1.359848 CGACGCCTAATCAAGCTTGT 58.640 50.000 25.19 10.46 0.00 3.16
3321 3522 0.652592 CCGACGCCTAATCAAGCTTG 59.347 55.000 20.81 20.81 0.00 4.01
3323 3524 1.521681 GCCGACGCCTAATCAAGCT 60.522 57.895 0.00 0.00 0.00 3.74
3324 3525 0.249322 TAGCCGACGCCTAATCAAGC 60.249 55.000 0.00 0.00 34.57 4.01
3325 3526 2.440539 ATAGCCGACGCCTAATCAAG 57.559 50.000 0.00 0.00 34.57 3.02
3336 3537 3.128349 TGCTCCGAAAATTATAGCCGAC 58.872 45.455 0.00 0.00 32.14 4.79
3340 3541 5.277538 CCTCAACTGCTCCGAAAATTATAGC 60.278 44.000 0.00 0.00 0.00 2.97
3346 3547 2.616510 CCTCCTCAACTGCTCCGAAAAT 60.617 50.000 0.00 0.00 0.00 1.82
3407 3647 1.884926 GATGCTGGCGAGTGCTACC 60.885 63.158 0.00 0.00 42.25 3.18
3408 3648 0.531532 ATGATGCTGGCGAGTGCTAC 60.532 55.000 0.00 0.00 42.25 3.58
3409 3649 0.531311 CATGATGCTGGCGAGTGCTA 60.531 55.000 0.00 0.00 42.25 3.49
3412 3652 2.012237 GACATGATGCTGGCGAGTG 58.988 57.895 0.00 0.00 0.00 3.51
3458 3704 9.819267 CTGCCTATAATTAAGCTACCCTATAAC 57.181 37.037 0.00 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.