Multiple sequence alignment - TraesCS7D01G404400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G404400 chr7D 100.000 3187 0 0 1 3187 521762793 521765979 0.000000e+00 5886.0
1 TraesCS7D01G404400 chr7D 79.583 480 59 16 1152 1630 522154542 522154101 1.110000e-79 307.0
2 TraesCS7D01G404400 chr7B 90.999 2133 125 33 49 2171 555654901 555656976 0.000000e+00 2813.0
3 TraesCS7D01G404400 chr7B 83.699 730 59 26 2198 2905 555656967 555657658 4.480000e-178 634.0
4 TraesCS7D01G404400 chr7B 82.927 369 39 8 1248 1616 556333129 556332785 8.580000e-81 311.0
5 TraesCS7D01G404400 chr7B 77.848 474 69 17 678 1143 556333680 556333235 8.770000e-66 261.0
6 TraesCS7D01G404400 chr7B 96.154 52 2 0 1 52 555584604 555584655 5.660000e-13 86.1
7 TraesCS7D01G404400 chr7A 93.820 1165 40 9 52 1212 602098204 602099340 0.000000e+00 1724.0
8 TraesCS7D01G404400 chr7A 90.200 949 56 19 1245 2173 602099335 602100266 0.000000e+00 1203.0
9 TraesCS7D01G404400 chr7A 84.436 771 76 28 2203 2939 602100259 602101019 0.000000e+00 719.0
10 TraesCS7D01G404400 chr7A 78.224 473 56 20 678 1143 602659033 602658601 3.150000e-65 259.0
11 TraesCS7D01G404400 chr7A 96.364 55 1 1 1 55 602097130 602097183 4.380000e-14 89.8
12 TraesCS7D01G404400 chr1D 77.698 417 46 24 137 546 37528511 37528135 8.960000e-51 211.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G404400 chr7D 521762793 521765979 3186 False 5886.00 5886 100.0000 1 3187 1 chr7D.!!$F1 3186
1 TraesCS7D01G404400 chr7B 555654901 555657658 2757 False 1723.50 2813 87.3490 49 2905 2 chr7B.!!$F2 2856
2 TraesCS7D01G404400 chr7B 556332785 556333680 895 True 286.00 311 80.3875 678 1616 2 chr7B.!!$R1 938
3 TraesCS7D01G404400 chr7A 602097130 602101019 3889 False 933.95 1724 91.2050 1 2939 4 chr7A.!!$F1 2938

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
126 1151 0.603707 TCTGAAAAGAGGGCGCACTG 60.604 55.0 21.85 0.00 0.0 3.66 F
464 1489 0.753262 ACATCGTATCCCCTGCTGAC 59.247 55.0 0.00 0.00 0.0 3.51 F
1242 2317 0.251698 TTGCCATGAACATGAGGCCA 60.252 50.0 15.21 1.86 41.2 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1223 2298 0.251698 TGGCCTCATGTTCATGGCAA 60.252 50.000 3.32 0.83 46.53 4.52 R
1289 2396 1.377856 GGAGCCTCTTGCCTTGGAC 60.378 63.158 0.00 0.00 42.71 4.02 R
3128 4311 0.109132 CAGGGCGGCACTCATTTTTC 60.109 55.000 12.47 0.00 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 1151 0.603707 TCTGAAAAGAGGGCGCACTG 60.604 55.000 21.85 0.00 0.00 3.66
176 1201 4.698201 TTTCAGGGTGACAAGTGATGTA 57.302 40.909 0.00 0.00 44.12 2.29
183 1208 7.563556 TCAGGGTGACAAGTGATGTATATCTAA 59.436 37.037 0.89 0.00 44.12 2.10
317 1342 8.942338 ATGCGTAAGAATTGTCTTTACTGATA 57.058 30.769 0.00 0.00 41.55 2.15
367 1392 3.667497 TGTAACTGTTCCTCTGCAGAG 57.333 47.619 32.84 32.84 41.71 3.35
408 1433 2.238521 GGCTGAAAGGACCATTCACAA 58.761 47.619 8.07 0.00 33.47 3.33
464 1489 0.753262 ACATCGTATCCCCTGCTGAC 59.247 55.000 0.00 0.00 0.00 3.51
501 1526 7.408543 TCTTTTCATGGAGGAGATGAGAAAAT 58.591 34.615 0.00 0.00 34.31 1.82
557 1582 3.840666 TGGTCTCAAAATCCTGTAGCTCT 59.159 43.478 0.00 0.00 0.00 4.09
558 1583 4.081420 TGGTCTCAAAATCCTGTAGCTCTC 60.081 45.833 0.00 0.00 0.00 3.20
559 1584 4.109050 GTCTCAAAATCCTGTAGCTCTCG 58.891 47.826 0.00 0.00 0.00 4.04
560 1585 2.863137 CTCAAAATCCTGTAGCTCTCGC 59.137 50.000 0.00 0.00 0.00 5.03
561 1586 1.936547 CAAAATCCTGTAGCTCTCGCC 59.063 52.381 0.00 0.00 36.60 5.54
562 1587 1.490574 AAATCCTGTAGCTCTCGCCT 58.509 50.000 0.00 0.00 36.60 5.52
563 1588 1.036707 AATCCTGTAGCTCTCGCCTC 58.963 55.000 0.00 0.00 36.60 4.70
633 1658 1.536766 CCAACGACATGCACACAGATT 59.463 47.619 0.00 0.00 0.00 2.40
709 1736 3.451894 GCCCCCAGCGGAAACATG 61.452 66.667 0.00 0.00 0.00 3.21
758 1785 2.689983 AGTTCCTGAAACTGTTGCTTGG 59.310 45.455 0.00 2.83 46.61 3.61
811 1841 4.715297 TGGGAGAGTACTAACCCTGATTTC 59.285 45.833 26.78 8.71 42.49 2.17
844 1875 0.834687 AGGGTGAGAAAGGCACGGTA 60.835 55.000 0.00 0.00 37.13 4.02
976 2011 3.372206 CAGCATCCAGGAGTTAAAAGACG 59.628 47.826 0.00 0.00 0.00 4.18
1086 2121 3.532155 CCTCCTCCTCGCCTTCGG 61.532 72.222 0.00 0.00 36.13 4.30
1182 2247 2.821969 AGTTTGTGTGCATCAATCTCCC 59.178 45.455 7.83 0.00 0.00 4.30
1211 2286 9.950496 TTGCTCTCTACTTTCTTCATATTTCTT 57.050 29.630 0.00 0.00 0.00 2.52
1212 2287 9.593134 TGCTCTCTACTTTCTTCATATTTCTTC 57.407 33.333 0.00 0.00 0.00 2.87
1213 2288 9.593134 GCTCTCTACTTTCTTCATATTTCTTCA 57.407 33.333 0.00 0.00 0.00 3.02
1216 2291 8.723942 TCTACTTTCTTCATATTTCTTCAGGC 57.276 34.615 0.00 0.00 0.00 4.85
1217 2292 8.543774 TCTACTTTCTTCATATTTCTTCAGGCT 58.456 33.333 0.00 0.00 0.00 4.58
1218 2293 7.622893 ACTTTCTTCATATTTCTTCAGGCTC 57.377 36.000 0.00 0.00 0.00 4.70
1219 2294 7.170965 ACTTTCTTCATATTTCTTCAGGCTCA 58.829 34.615 0.00 0.00 0.00 4.26
1220 2295 7.336427 ACTTTCTTCATATTTCTTCAGGCTCAG 59.664 37.037 0.00 0.00 0.00 3.35
1221 2296 5.121811 TCTTCATATTTCTTCAGGCTCAGC 58.878 41.667 0.00 0.00 0.00 4.26
1231 2306 2.044650 GGCTCAGCCTTGCCATGA 60.045 61.111 9.09 0.00 46.69 3.07
1232 2307 1.679977 GGCTCAGCCTTGCCATGAA 60.680 57.895 9.09 0.00 46.69 2.57
1233 2308 1.509923 GCTCAGCCTTGCCATGAAC 59.490 57.895 0.00 0.00 0.00 3.18
1234 2309 1.246056 GCTCAGCCTTGCCATGAACA 61.246 55.000 0.00 0.00 0.00 3.18
1235 2310 1.471119 CTCAGCCTTGCCATGAACAT 58.529 50.000 0.00 0.00 0.00 2.71
1236 2311 1.134367 CTCAGCCTTGCCATGAACATG 59.866 52.381 7.70 7.70 38.51 3.21
1237 2312 1.179152 CAGCCTTGCCATGAACATGA 58.821 50.000 15.21 0.00 41.20 3.07
1238 2313 1.134367 CAGCCTTGCCATGAACATGAG 59.866 52.381 15.21 5.85 41.20 2.90
1239 2314 0.458669 GCCTTGCCATGAACATGAGG 59.541 55.000 15.21 14.12 41.20 3.86
1240 2315 0.458669 CCTTGCCATGAACATGAGGC 59.541 55.000 15.21 11.63 41.20 4.70
1241 2316 0.458669 CTTGCCATGAACATGAGGCC 59.541 55.000 15.21 0.00 41.20 5.19
1242 2317 0.251698 TTGCCATGAACATGAGGCCA 60.252 50.000 15.21 1.86 41.20 5.36
1243 2318 0.681887 TGCCATGAACATGAGGCCAG 60.682 55.000 15.21 0.00 41.20 4.85
1244 2319 0.682209 GCCATGAACATGAGGCCAGT 60.682 55.000 15.21 0.00 41.20 4.00
1245 2320 1.386533 CCATGAACATGAGGCCAGTC 58.613 55.000 15.21 0.00 41.20 3.51
1246 2321 1.064906 CCATGAACATGAGGCCAGTCT 60.065 52.381 15.21 0.00 41.20 3.24
1247 2322 2.286872 CATGAACATGAGGCCAGTCTC 58.713 52.381 5.01 0.00 41.20 3.36
1248 2323 1.649321 TGAACATGAGGCCAGTCTCT 58.351 50.000 5.01 0.00 34.98 3.10
1289 2396 2.151202 TGCCGCTTACTTTTCCAGAAG 58.849 47.619 0.00 0.00 0.00 2.85
1550 2662 2.038557 AGTACTGATCTTGTTGCGGGTT 59.961 45.455 0.00 0.00 0.00 4.11
1616 2728 8.898761 TGTTTGCCTATAATGTTTGTCGATATT 58.101 29.630 0.00 0.00 0.00 1.28
1619 2731 9.549078 TTGCCTATAATGTTTGTCGATATTGTA 57.451 29.630 0.00 0.00 0.00 2.41
1666 2778 4.623932 TTTATCCTGTCTGTGTGCTTCT 57.376 40.909 0.00 0.00 0.00 2.85
1667 2779 2.469274 ATCCTGTCTGTGTGCTTCTG 57.531 50.000 0.00 0.00 0.00 3.02
1668 2780 0.250038 TCCTGTCTGTGTGCTTCTGC 60.250 55.000 0.00 0.00 40.20 4.26
1669 2781 0.250209 CCTGTCTGTGTGCTTCTGCT 60.250 55.000 0.00 0.00 40.48 4.24
1670 2782 1.590932 CTGTCTGTGTGCTTCTGCTT 58.409 50.000 0.00 0.00 40.48 3.91
1671 2783 1.263484 CTGTCTGTGTGCTTCTGCTTG 59.737 52.381 0.00 0.00 40.48 4.01
1672 2784 0.040603 GTCTGTGTGCTTCTGCTTGC 60.041 55.000 0.00 0.00 40.48 4.01
1673 2785 1.082300 CTGTGTGCTTCTGCTTGCG 60.082 57.895 0.00 0.00 40.48 4.85
1674 2786 2.253452 GTGTGCTTCTGCTTGCGG 59.747 61.111 0.00 0.00 40.48 5.69
1675 2787 2.203195 TGTGCTTCTGCTTGCGGT 60.203 55.556 1.11 0.00 40.48 5.68
1676 2788 1.070615 TGTGCTTCTGCTTGCGGTA 59.929 52.632 1.11 0.00 40.48 4.02
1677 2789 0.533978 TGTGCTTCTGCTTGCGGTAA 60.534 50.000 1.11 0.00 40.48 2.85
1678 2790 0.166814 GTGCTTCTGCTTGCGGTAAG 59.833 55.000 1.08 1.08 40.48 2.34
1710 2822 9.515226 AAAGTTCTTGAATTACCAAGCTATGTA 57.485 29.630 2.70 0.00 42.34 2.29
1711 2823 8.494016 AGTTCTTGAATTACCAAGCTATGTAC 57.506 34.615 2.70 0.00 42.34 2.90
1713 2825 7.843490 TCTTGAATTACCAAGCTATGTACAC 57.157 36.000 0.00 0.00 42.34 2.90
1714 2826 6.821665 TCTTGAATTACCAAGCTATGTACACC 59.178 38.462 0.00 0.00 42.34 4.16
1715 2827 6.056090 TGAATTACCAAGCTATGTACACCA 57.944 37.500 0.00 0.00 0.00 4.17
1717 2829 7.116075 TGAATTACCAAGCTATGTACACCAAT 58.884 34.615 0.00 0.00 0.00 3.16
1721 2843 6.942532 ACCAAGCTATGTACACCAATATTG 57.057 37.500 8.58 8.58 0.00 1.90
1727 2849 5.983720 GCTATGTACACCAATATTGTCGTCT 59.016 40.000 14.25 0.00 0.00 4.18
1729 2851 6.662414 ATGTACACCAATATTGTCGTCTTG 57.338 37.500 14.25 4.35 0.00 3.02
1942 3072 9.851686 TTTTGAGTTATAGAGATGCAATATGGT 57.148 29.630 0.00 0.00 0.00 3.55
1976 3111 4.265073 ACAGTCTTGTCAATATCAAGCCC 58.735 43.478 0.00 0.00 41.13 5.19
1977 3112 4.263462 ACAGTCTTGTCAATATCAAGCCCA 60.263 41.667 0.00 0.00 41.13 5.36
2051 3186 9.814899 TTTTCTAAGTCAATTTGCAGATGAAAA 57.185 25.926 5.70 5.70 0.00 2.29
2056 3191 4.382754 GTCAATTTGCAGATGAAAACGGAC 59.617 41.667 0.00 4.36 0.00 4.79
2134 3277 7.380423 AACTTAGAATATGCTCAGTGGGTAT 57.620 36.000 0.00 0.00 0.00 2.73
2156 3299 3.098377 ACACATGCTAATGGGCAAATCA 58.902 40.909 0.00 0.00 45.68 2.57
2167 3312 2.308570 TGGGCAAATCAGAGAGGCTAAA 59.691 45.455 0.00 0.00 0.00 1.85
2168 3313 3.245229 TGGGCAAATCAGAGAGGCTAAAA 60.245 43.478 0.00 0.00 0.00 1.52
2169 3314 3.129462 GGGCAAATCAGAGAGGCTAAAAC 59.871 47.826 0.00 0.00 0.00 2.43
2170 3315 3.758554 GGCAAATCAGAGAGGCTAAAACA 59.241 43.478 0.00 0.00 0.00 2.83
2171 3316 4.400567 GGCAAATCAGAGAGGCTAAAACAT 59.599 41.667 0.00 0.00 0.00 2.71
2172 3317 5.105595 GGCAAATCAGAGAGGCTAAAACATT 60.106 40.000 0.00 0.00 0.00 2.71
2173 3318 6.393171 GCAAATCAGAGAGGCTAAAACATTT 58.607 36.000 0.00 0.00 0.00 2.32
2174 3319 6.870439 GCAAATCAGAGAGGCTAAAACATTTT 59.130 34.615 0.00 0.00 0.00 1.82
2175 3320 7.386025 GCAAATCAGAGAGGCTAAAACATTTTT 59.614 33.333 0.00 0.00 0.00 1.94
2360 3505 5.036916 TGATACAAGGGAAGTGGGTATCTT 58.963 41.667 0.00 0.00 40.42 2.40
2394 3539 6.150307 TGTGTTCACTGTTAGTTTGACACAAT 59.850 34.615 14.35 0.00 38.54 2.71
2430 3575 5.717078 TGAAATCCGTACAACTCTACAGT 57.283 39.130 0.00 0.00 0.00 3.55
2439 3584 5.335740 CGTACAACTCTACAGTGGTTCAGAT 60.336 44.000 0.00 0.00 37.94 2.90
2483 3635 5.163923 GCAGAATTTTCAAATGCAACTAGCC 60.164 40.000 0.00 0.00 44.83 3.93
2484 3636 5.061311 CAGAATTTTCAAATGCAACTAGCCG 59.939 40.000 0.00 0.00 44.83 5.52
2499 3651 1.616159 AGCCGCACATAAGGTTTGTT 58.384 45.000 0.00 0.00 0.00 2.83
2500 3652 1.960689 AGCCGCACATAAGGTTTGTTT 59.039 42.857 0.00 0.00 0.00 2.83
2524 3677 5.730296 TTTTTCCTTGCGGGATTTAATCA 57.270 34.783 7.29 0.00 44.66 2.57
2537 3690 9.937175 GCGGGATTTAATCATAATAAATCTAGC 57.063 33.333 14.93 15.32 43.99 3.42
2578 3731 1.964223 TCCAACGCCCATTAAAAAGCA 59.036 42.857 0.00 0.00 0.00 3.91
2688 3855 6.144402 GCATAAATTCAAAAGGTGTCTGTGTG 59.856 38.462 0.00 0.00 0.00 3.82
2694 3863 5.226396 TCAAAAGGTGTCTGTGTGTTTTTG 58.774 37.500 0.00 0.00 36.12 2.44
2732 3903 9.522804 GTGATTTTAAAAGTTGACCACACATTA 57.477 29.630 6.79 0.00 0.00 1.90
2739 3910 8.785329 AAAAGTTGACCACACATTACAAAAAT 57.215 26.923 0.00 0.00 0.00 1.82
2968 4151 9.695884 AAATGTTAACGTGTATTTTGCAAAAAG 57.304 25.926 27.10 17.45 0.00 2.27
2969 4152 8.635877 ATGTTAACGTGTATTTTGCAAAAAGA 57.364 26.923 27.10 15.90 0.00 2.52
2970 4153 8.462143 TGTTAACGTGTATTTTGCAAAAAGAA 57.538 26.923 27.10 13.66 0.00 2.52
2971 4154 9.088512 TGTTAACGTGTATTTTGCAAAAAGAAT 57.911 25.926 27.10 14.00 0.00 2.40
2972 4155 9.909043 GTTAACGTGTATTTTGCAAAAAGAATT 57.091 25.926 27.10 17.80 0.00 2.17
2975 4158 8.635877 ACGTGTATTTTGCAAAAAGAATTACA 57.364 26.923 27.10 24.29 0.00 2.41
2976 4159 9.255304 ACGTGTATTTTGCAAAAAGAATTACAT 57.745 25.926 27.10 13.66 0.00 2.29
3041 4224 9.682465 AAAGGGAGTATAGAAATAGGAAACAAC 57.318 33.333 0.00 0.00 0.00 3.32
3042 4225 8.388656 AGGGAGTATAGAAATAGGAAACAACA 57.611 34.615 0.00 0.00 0.00 3.33
3043 4226 8.832735 AGGGAGTATAGAAATAGGAAACAACAA 58.167 33.333 0.00 0.00 0.00 2.83
3044 4227 9.457436 GGGAGTATAGAAATAGGAAACAACAAA 57.543 33.333 0.00 0.00 0.00 2.83
3082 4265 8.824756 AGATAAAGAAAAGGGAAAGGATAACC 57.175 34.615 0.00 0.00 0.00 2.85
3083 4266 5.977489 AAAGAAAAGGGAAAGGATAACCG 57.023 39.130 0.00 0.00 41.83 4.44
3084 4267 3.964411 AGAAAAGGGAAAGGATAACCGG 58.036 45.455 0.00 0.00 41.83 5.28
3085 4268 3.590182 AGAAAAGGGAAAGGATAACCGGA 59.410 43.478 9.46 0.00 41.83 5.14
3086 4269 4.043686 AGAAAAGGGAAAGGATAACCGGAA 59.956 41.667 9.46 0.00 41.83 4.30
3087 4270 4.391683 AAAGGGAAAGGATAACCGGAAA 57.608 40.909 9.46 0.00 41.83 3.13
3088 4271 4.391683 AAGGGAAAGGATAACCGGAAAA 57.608 40.909 9.46 0.00 41.83 2.29
3089 4272 4.603094 AGGGAAAGGATAACCGGAAAAT 57.397 40.909 9.46 0.00 41.83 1.82
3090 4273 5.720486 AGGGAAAGGATAACCGGAAAATA 57.280 39.130 9.46 0.00 41.83 1.40
3091 4274 5.691896 AGGGAAAGGATAACCGGAAAATAG 58.308 41.667 9.46 0.00 41.83 1.73
3092 4275 5.430745 AGGGAAAGGATAACCGGAAAATAGA 59.569 40.000 9.46 0.00 41.83 1.98
3093 4276 6.069264 AGGGAAAGGATAACCGGAAAATAGAA 60.069 38.462 9.46 0.00 41.83 2.10
3094 4277 6.039047 GGGAAAGGATAACCGGAAAATAGAAC 59.961 42.308 9.46 0.00 41.83 3.01
3095 4278 6.039047 GGAAAGGATAACCGGAAAATAGAACC 59.961 42.308 9.46 0.00 41.83 3.62
3096 4279 5.703730 AGGATAACCGGAAAATAGAACCA 57.296 39.130 9.46 0.00 41.83 3.67
3097 4280 5.681639 AGGATAACCGGAAAATAGAACCAG 58.318 41.667 9.46 0.00 41.83 4.00
3098 4281 5.427481 AGGATAACCGGAAAATAGAACCAGA 59.573 40.000 9.46 0.00 41.83 3.86
3099 4282 5.758784 GGATAACCGGAAAATAGAACCAGAG 59.241 44.000 9.46 0.00 0.00 3.35
3100 4283 4.903045 AACCGGAAAATAGAACCAGAGA 57.097 40.909 9.46 0.00 0.00 3.10
3101 4284 4.903045 ACCGGAAAATAGAACCAGAGAA 57.097 40.909 9.46 0.00 0.00 2.87
3102 4285 5.237236 ACCGGAAAATAGAACCAGAGAAA 57.763 39.130 9.46 0.00 0.00 2.52
3103 4286 5.627135 ACCGGAAAATAGAACCAGAGAAAA 58.373 37.500 9.46 0.00 0.00 2.29
3104 4287 6.066032 ACCGGAAAATAGAACCAGAGAAAAA 58.934 36.000 9.46 0.00 0.00 1.94
3105 4288 6.719829 ACCGGAAAATAGAACCAGAGAAAAAT 59.280 34.615 9.46 0.00 0.00 1.82
3106 4289 7.029563 CCGGAAAATAGAACCAGAGAAAAATG 58.970 38.462 0.00 0.00 0.00 2.32
3107 4290 7.094377 CCGGAAAATAGAACCAGAGAAAAATGA 60.094 37.037 0.00 0.00 0.00 2.57
3108 4291 8.296713 CGGAAAATAGAACCAGAGAAAAATGAA 58.703 33.333 0.00 0.00 0.00 2.57
3109 4292 9.981114 GGAAAATAGAACCAGAGAAAAATGAAA 57.019 29.630 0.00 0.00 0.00 2.69
3114 4297 7.601705 AGAACCAGAGAAAAATGAAAATCCA 57.398 32.000 0.00 0.00 0.00 3.41
3115 4298 7.664758 AGAACCAGAGAAAAATGAAAATCCAG 58.335 34.615 0.00 0.00 0.00 3.86
3116 4299 5.787380 ACCAGAGAAAAATGAAAATCCAGC 58.213 37.500 0.00 0.00 0.00 4.85
3117 4300 5.305128 ACCAGAGAAAAATGAAAATCCAGCA 59.695 36.000 0.00 0.00 0.00 4.41
3118 4301 6.183360 ACCAGAGAAAAATGAAAATCCAGCAA 60.183 34.615 0.00 0.00 0.00 3.91
3119 4302 6.707161 CCAGAGAAAAATGAAAATCCAGCAAA 59.293 34.615 0.00 0.00 0.00 3.68
3120 4303 7.227116 CCAGAGAAAAATGAAAATCCAGCAAAA 59.773 33.333 0.00 0.00 0.00 2.44
3121 4304 8.614346 CAGAGAAAAATGAAAATCCAGCAAAAA 58.386 29.630 0.00 0.00 0.00 1.94
3142 4325 6.949578 AAAATGTATGAAAAATGAGTGCCG 57.050 33.333 0.00 0.00 0.00 5.69
3143 4326 3.485947 TGTATGAAAAATGAGTGCCGC 57.514 42.857 0.00 0.00 0.00 6.53
3144 4327 2.163412 TGTATGAAAAATGAGTGCCGCC 59.837 45.455 0.00 0.00 0.00 6.13
3145 4328 0.532115 ATGAAAAATGAGTGCCGCCC 59.468 50.000 0.00 0.00 0.00 6.13
3146 4329 0.539438 TGAAAAATGAGTGCCGCCCT 60.539 50.000 0.00 0.00 0.00 5.19
3147 4330 0.109132 GAAAAATGAGTGCCGCCCTG 60.109 55.000 0.00 0.00 0.00 4.45
3148 4331 1.535204 AAAAATGAGTGCCGCCCTGG 61.535 55.000 0.00 0.00 42.50 4.45
3149 4332 2.713531 AAAATGAGTGCCGCCCTGGT 62.714 55.000 0.00 0.00 41.21 4.00
3150 4333 3.628646 AATGAGTGCCGCCCTGGTC 62.629 63.158 0.00 0.00 41.21 4.02
3160 4343 3.093835 CCCTGGTCGGCCCCATTA 61.094 66.667 2.12 0.00 33.00 1.90
3161 4344 2.192175 CCTGGTCGGCCCCATTAC 59.808 66.667 2.12 0.00 33.00 1.89
3162 4345 2.675242 CCTGGTCGGCCCCATTACA 61.675 63.158 2.12 0.00 33.00 2.41
3163 4346 1.451387 CTGGTCGGCCCCATTACAC 60.451 63.158 2.12 0.00 33.00 2.90
3164 4347 2.191786 CTGGTCGGCCCCATTACACA 62.192 60.000 2.12 0.00 33.00 3.72
3165 4348 1.747745 GGTCGGCCCCATTACACAC 60.748 63.158 0.00 0.00 0.00 3.82
3166 4349 1.298667 GTCGGCCCCATTACACACT 59.701 57.895 0.00 0.00 0.00 3.55
3167 4350 0.743345 GTCGGCCCCATTACACACTC 60.743 60.000 0.00 0.00 0.00 3.51
3168 4351 1.813753 CGGCCCCATTACACACTCG 60.814 63.158 0.00 0.00 0.00 4.18
3169 4352 1.298667 GGCCCCATTACACACTCGT 59.701 57.895 0.00 0.00 0.00 4.18
3178 4361 3.951332 CACACTCGTGCGGTCAAT 58.049 55.556 0.00 0.00 36.06 2.57
3179 4362 3.116073 CACACTCGTGCGGTCAATA 57.884 52.632 0.00 0.00 36.06 1.90
3180 4363 1.640428 CACACTCGTGCGGTCAATAT 58.360 50.000 0.00 0.00 36.06 1.28
3181 4364 1.324435 CACACTCGTGCGGTCAATATG 59.676 52.381 0.00 0.00 36.06 1.78
3182 4365 1.067142 ACACTCGTGCGGTCAATATGT 60.067 47.619 0.00 0.00 0.00 2.29
3183 4366 2.164827 ACACTCGTGCGGTCAATATGTA 59.835 45.455 0.00 0.00 0.00 2.29
3184 4367 2.789339 CACTCGTGCGGTCAATATGTAG 59.211 50.000 0.00 0.00 0.00 2.74
3185 4368 2.426024 ACTCGTGCGGTCAATATGTAGT 59.574 45.455 0.00 0.00 0.00 2.73
3186 4369 3.119245 ACTCGTGCGGTCAATATGTAGTT 60.119 43.478 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 7.785985 TGGATCCACCATTTCATTTTATCTCAT 59.214 33.333 11.44 0.00 44.64 2.90
126 1151 2.565834 TGTTACCACTGAGTAGGAAGGC 59.434 50.000 7.84 0.00 0.00 4.35
231 1256 3.857052 TGTACAGATCATGAAACCGGAC 58.143 45.455 9.46 0.00 0.00 4.79
307 1332 5.482908 AGGACAACTGCTGTATCAGTAAAG 58.517 41.667 0.00 0.00 45.77 1.85
317 1342 1.417890 AGTAGCAAGGACAACTGCTGT 59.582 47.619 6.82 0.00 42.61 4.40
367 1392 2.921126 CAAGTTTCAGACGTGGCATTC 58.079 47.619 0.00 0.00 34.58 2.67
408 1433 3.860930 ATGTCGTTTTGGGCGGCCT 62.861 57.895 29.87 1.49 32.41 5.19
464 1489 2.033602 AAAAGAAGGCCCGTCCGG 59.966 61.111 0.00 0.00 40.77 5.14
471 1496 2.025887 TCTCCTCCATGAAAAGAAGGCC 60.026 50.000 0.00 0.00 0.00 5.19
472 1497 3.356529 TCTCCTCCATGAAAAGAAGGC 57.643 47.619 0.00 0.00 0.00 4.35
476 1501 6.378661 TTTCTCATCTCCTCCATGAAAAGA 57.621 37.500 0.00 0.00 29.74 2.52
501 1526 9.177608 CCTGTAATGTAAAAATCCTGAGATTGA 57.822 33.333 0.00 0.00 42.03 2.57
561 1586 0.459934 CTCTTTGCCAGCTCCGAGAG 60.460 60.000 0.00 0.00 0.00 3.20
562 1587 1.593787 CTCTTTGCCAGCTCCGAGA 59.406 57.895 0.00 0.00 0.00 4.04
563 1588 2.105466 GCTCTTTGCCAGCTCCGAG 61.105 63.158 0.00 0.00 33.75 4.63
709 1736 1.871408 CGGTGCTCTATGGCATCACTC 60.871 57.143 1.65 0.00 42.88 3.51
758 1785 1.182667 GATTAGCACCACCCCCAAAC 58.817 55.000 0.00 0.00 0.00 2.93
811 1841 1.272490 TCACCCTCTTGTTAGCTCACG 59.728 52.381 0.00 0.00 0.00 4.35
976 2011 3.749064 TGTGCGGAGGCTCGTCTC 61.749 66.667 8.69 4.30 40.82 3.36
1086 2121 0.396139 ACACCATGTGCCATGGGATC 60.396 55.000 27.53 6.38 43.32 3.36
1182 2247 8.729805 AATATGAAGAAAGTAGAGAGCAAAGG 57.270 34.615 0.00 0.00 0.00 3.11
1215 2290 1.246056 TGTTCATGGCAAGGCTGAGC 61.246 55.000 0.00 0.00 0.00 4.26
1216 2291 1.134367 CATGTTCATGGCAAGGCTGAG 59.866 52.381 5.02 0.00 0.00 3.35
1217 2292 1.179152 CATGTTCATGGCAAGGCTGA 58.821 50.000 5.02 0.00 0.00 4.26
1218 2293 1.134367 CTCATGTTCATGGCAAGGCTG 59.866 52.381 12.02 0.00 0.00 4.85
1219 2294 1.471119 CTCATGTTCATGGCAAGGCT 58.529 50.000 12.02 0.00 0.00 4.58
1220 2295 0.458669 CCTCATGTTCATGGCAAGGC 59.541 55.000 12.02 0.00 0.00 4.35
1221 2296 0.458669 GCCTCATGTTCATGGCAAGG 59.541 55.000 12.02 12.01 44.34 3.61
1222 2297 0.458669 GGCCTCATGTTCATGGCAAG 59.541 55.000 12.02 0.00 46.53 4.01
1223 2298 0.251698 TGGCCTCATGTTCATGGCAA 60.252 50.000 3.32 0.83 46.53 4.52
1224 2299 0.681887 CTGGCCTCATGTTCATGGCA 60.682 55.000 3.32 0.00 46.53 4.92
1225 2300 0.682209 ACTGGCCTCATGTTCATGGC 60.682 55.000 3.32 8.77 44.22 4.40
1226 2301 1.064906 AGACTGGCCTCATGTTCATGG 60.065 52.381 3.32 4.26 0.00 3.66
1227 2302 2.093075 AGAGACTGGCCTCATGTTCATG 60.093 50.000 3.32 6.46 35.68 3.07
1228 2303 2.194859 AGAGACTGGCCTCATGTTCAT 58.805 47.619 3.32 0.00 35.68 2.57
1229 2304 1.649321 AGAGACTGGCCTCATGTTCA 58.351 50.000 3.32 0.00 35.68 3.18
1230 2305 2.777832 AAGAGACTGGCCTCATGTTC 57.222 50.000 3.32 0.00 35.68 3.18
1231 2306 2.906389 TGTAAGAGACTGGCCTCATGTT 59.094 45.455 3.32 0.00 35.68 2.71
1232 2307 2.540383 TGTAAGAGACTGGCCTCATGT 58.460 47.619 3.32 0.00 35.68 3.21
1233 2308 3.616956 TTGTAAGAGACTGGCCTCATG 57.383 47.619 3.32 0.00 35.68 3.07
1234 2309 3.584848 ACTTTGTAAGAGACTGGCCTCAT 59.415 43.478 3.32 0.00 35.68 2.90
1235 2310 2.972713 ACTTTGTAAGAGACTGGCCTCA 59.027 45.455 3.32 0.00 35.68 3.86
1236 2311 3.686916 ACTTTGTAAGAGACTGGCCTC 57.313 47.619 3.32 0.00 0.00 4.70
1237 2312 5.763876 ATAACTTTGTAAGAGACTGGCCT 57.236 39.130 3.32 0.00 0.00 5.19
1238 2313 5.354513 GGAATAACTTTGTAAGAGACTGGCC 59.645 44.000 0.00 0.00 0.00 5.36
1239 2314 6.092807 CAGGAATAACTTTGTAAGAGACTGGC 59.907 42.308 0.00 0.00 0.00 4.85
1240 2315 6.595716 CCAGGAATAACTTTGTAAGAGACTGG 59.404 42.308 0.00 0.00 34.10 4.00
1241 2316 7.386851 TCCAGGAATAACTTTGTAAGAGACTG 58.613 38.462 0.00 0.00 0.00 3.51
1242 2317 7.554959 TCCAGGAATAACTTTGTAAGAGACT 57.445 36.000 0.00 0.00 0.00 3.24
1243 2318 7.878644 AGTTCCAGGAATAACTTTGTAAGAGAC 59.121 37.037 4.80 0.00 0.00 3.36
1244 2319 7.878127 CAGTTCCAGGAATAACTTTGTAAGAGA 59.122 37.037 4.80 0.00 0.00 3.10
1245 2320 7.361286 GCAGTTCCAGGAATAACTTTGTAAGAG 60.361 40.741 4.80 0.00 0.00 2.85
1246 2321 6.430000 GCAGTTCCAGGAATAACTTTGTAAGA 59.570 38.462 4.80 0.00 0.00 2.10
1247 2322 6.349363 GGCAGTTCCAGGAATAACTTTGTAAG 60.349 42.308 4.80 0.00 34.01 2.34
1248 2323 5.475564 GGCAGTTCCAGGAATAACTTTGTAA 59.524 40.000 4.80 0.00 34.01 2.41
1289 2396 1.377856 GGAGCCTCTTGCCTTGGAC 60.378 63.158 0.00 0.00 42.71 4.02
1550 2662 5.066117 GCACTACACAGATACTAGCACTACA 59.934 44.000 0.00 0.00 0.00 2.74
1616 2728 6.707290 AGCCAGTAAACAACATATCAGTACA 58.293 36.000 0.00 0.00 0.00 2.90
1619 2731 6.947464 ACTAGCCAGTAAACAACATATCAGT 58.053 36.000 0.00 0.00 31.45 3.41
1668 2780 4.691216 AGAACTTTAGAAGCTTACCGCAAG 59.309 41.667 0.00 0.46 42.61 4.01
1669 2781 4.638304 AGAACTTTAGAAGCTTACCGCAA 58.362 39.130 0.00 0.00 42.61 4.85
1670 2782 4.267349 AGAACTTTAGAAGCTTACCGCA 57.733 40.909 0.00 0.00 42.61 5.69
1671 2783 4.689345 TCAAGAACTTTAGAAGCTTACCGC 59.311 41.667 0.00 0.00 39.57 5.68
1672 2784 6.780706 TTCAAGAACTTTAGAAGCTTACCG 57.219 37.500 0.00 0.00 0.00 4.02
1675 2787 9.787435 TGGTAATTCAAGAACTTTAGAAGCTTA 57.213 29.630 0.00 0.00 0.00 3.09
1676 2788 8.691661 TGGTAATTCAAGAACTTTAGAAGCTT 57.308 30.769 0.00 0.00 0.00 3.74
1677 2789 8.691661 TTGGTAATTCAAGAACTTTAGAAGCT 57.308 30.769 0.00 0.00 0.00 3.74
1678 2790 7.539022 GCTTGGTAATTCAAGAACTTTAGAAGC 59.461 37.037 10.29 0.00 44.98 3.86
1679 2791 8.787852 AGCTTGGTAATTCAAGAACTTTAGAAG 58.212 33.333 10.29 0.00 44.98 2.85
1680 2792 8.691661 AGCTTGGTAATTCAAGAACTTTAGAA 57.308 30.769 10.29 0.00 44.98 2.10
1681 2793 9.959721 ATAGCTTGGTAATTCAAGAACTTTAGA 57.040 29.630 10.29 0.00 44.98 2.10
1682 2794 9.994432 CATAGCTTGGTAATTCAAGAACTTTAG 57.006 33.333 10.29 0.00 44.98 1.85
1683 2795 9.515226 ACATAGCTTGGTAATTCAAGAACTTTA 57.485 29.630 10.29 0.00 44.98 1.85
1684 2796 8.409358 ACATAGCTTGGTAATTCAAGAACTTT 57.591 30.769 10.29 0.00 44.98 2.66
1710 2822 5.992829 TGTTACAAGACGACAATATTGGTGT 59.007 36.000 19.37 15.86 0.00 4.16
1711 2823 6.147164 ACTGTTACAAGACGACAATATTGGTG 59.853 38.462 19.37 12.94 0.00 4.17
1713 2825 6.367695 TGACTGTTACAAGACGACAATATTGG 59.632 38.462 19.37 5.37 0.00 3.16
1714 2826 7.346208 TGACTGTTACAAGACGACAATATTG 57.654 36.000 14.01 14.01 0.00 1.90
1715 2827 7.956420 TTGACTGTTACAAGACGACAATATT 57.044 32.000 0.00 0.00 0.00 1.28
1721 2843 8.684973 ACTTATATTGACTGTTACAAGACGAC 57.315 34.615 0.00 0.00 0.00 4.34
1942 3072 5.182487 TGACAAGACTGTTCAGTTTTGCTA 58.818 37.500 25.46 16.61 37.39 3.49
1976 3111 6.668541 AACATCCAGATTTCATAACTCGTG 57.331 37.500 0.00 0.00 0.00 4.35
1977 3112 6.480320 GCTAACATCCAGATTTCATAACTCGT 59.520 38.462 0.00 0.00 0.00 4.18
2051 3186 7.631007 TGTACCTATATGATATCTCTGTCCGT 58.369 38.462 3.98 0.00 0.00 4.69
2107 3250 6.611642 ACCCACTGAGCATATTCTAAGTTAGA 59.388 38.462 8.59 8.59 0.00 2.10
2134 3277 4.276642 TGATTTGCCCATTAGCATGTGTA 58.723 39.130 0.00 0.00 43.64 2.90
2189 3334 9.995957 GTTACAATTTGTTTTAGCCACAATTTT 57.004 25.926 7.45 0.00 34.13 1.82
2190 3335 9.167311 TGTTACAATTTGTTTTAGCCACAATTT 57.833 25.926 7.45 0.00 34.13 1.82
2191 3336 8.608317 GTGTTACAATTTGTTTTAGCCACAATT 58.392 29.630 7.45 0.00 34.13 2.32
2192 3337 7.766278 TGTGTTACAATTTGTTTTAGCCACAAT 59.234 29.630 7.45 0.00 34.13 2.71
2193 3338 7.063544 GTGTGTTACAATTTGTTTTAGCCACAA 59.936 33.333 7.45 0.00 32.16 3.33
2194 3339 6.531948 GTGTGTTACAATTTGTTTTAGCCACA 59.468 34.615 7.45 8.80 0.00 4.17
2195 3340 6.754675 AGTGTGTTACAATTTGTTTTAGCCAC 59.245 34.615 7.45 7.71 0.00 5.01
2196 3341 6.868622 AGTGTGTTACAATTTGTTTTAGCCA 58.131 32.000 7.45 0.00 0.00 4.75
2197 3342 6.419710 GGAGTGTGTTACAATTTGTTTTAGCC 59.580 38.462 7.45 0.00 0.00 3.93
2198 3343 6.975772 TGGAGTGTGTTACAATTTGTTTTAGC 59.024 34.615 7.45 0.00 0.00 3.09
2199 3344 7.971168 TGTGGAGTGTGTTACAATTTGTTTTAG 59.029 33.333 7.45 0.00 0.00 1.85
2200 3345 7.827701 TGTGGAGTGTGTTACAATTTGTTTTA 58.172 30.769 7.45 0.00 0.00 1.52
2201 3346 6.692486 TGTGGAGTGTGTTACAATTTGTTTT 58.308 32.000 7.45 0.00 0.00 2.43
2202 3347 6.274157 TGTGGAGTGTGTTACAATTTGTTT 57.726 33.333 7.45 0.00 0.00 2.83
2203 3348 5.906113 TGTGGAGTGTGTTACAATTTGTT 57.094 34.783 7.45 0.00 0.00 2.83
2204 3349 5.592282 TCATGTGGAGTGTGTTACAATTTGT 59.408 36.000 7.30 7.30 0.00 2.83
2331 3476 4.335416 CCACTTCCCTTGTATCACACAAT 58.665 43.478 0.00 0.00 45.96 2.71
2360 3505 8.500753 AACTAACAGTGAACACAATTTGTCTA 57.499 30.769 7.68 0.00 37.51 2.59
2394 3539 5.505780 ACGGATTTCATTTGGGTATCTTCA 58.494 37.500 0.00 0.00 0.00 3.02
2524 3677 9.902684 ATCTGCATTGCTAGCTAGATTTATTAT 57.097 29.630 25.15 5.42 30.90 1.28
2537 3690 6.798482 TGGAATTGTTTATCTGCATTGCTAG 58.202 36.000 10.49 6.03 0.00 3.42
2666 3833 6.767524 ACACACAGACACCTTTTGAATTTA 57.232 33.333 0.00 0.00 0.00 1.40
2668 3835 5.659440 AACACACAGACACCTTTTGAATT 57.341 34.783 0.00 0.00 0.00 2.17
2677 3844 4.805219 AGTTTCAAAAACACACAGACACC 58.195 39.130 5.46 0.00 0.00 4.16
2681 3848 8.085296 ACACAAATAGTTTCAAAAACACACAGA 58.915 29.630 5.46 0.00 0.00 3.41
2682 3849 8.161610 CACACAAATAGTTTCAAAAACACACAG 58.838 33.333 5.46 0.00 0.00 3.66
2942 4125 9.695884 CTTTTTGCAAAATACACGTTAACATTT 57.304 25.926 24.39 1.38 0.00 2.32
2943 4126 9.088512 TCTTTTTGCAAAATACACGTTAACATT 57.911 25.926 24.39 0.00 0.00 2.71
2944 4127 8.635877 TCTTTTTGCAAAATACACGTTAACAT 57.364 26.923 24.39 0.00 0.00 2.71
2945 4128 8.462143 TTCTTTTTGCAAAATACACGTTAACA 57.538 26.923 24.39 5.04 0.00 2.41
2946 4129 9.909043 AATTCTTTTTGCAAAATACACGTTAAC 57.091 25.926 24.39 0.00 0.00 2.01
2949 4132 9.088512 TGTAATTCTTTTTGCAAAATACACGTT 57.911 25.926 24.39 15.90 0.00 3.99
2950 4133 8.635877 TGTAATTCTTTTTGCAAAATACACGT 57.364 26.923 24.39 11.44 0.00 4.49
3015 4198 9.682465 GTTGTTTCCTATTTCTATACTCCCTTT 57.318 33.333 0.00 0.00 0.00 3.11
3016 4199 8.832735 TGTTGTTTCCTATTTCTATACTCCCTT 58.167 33.333 0.00 0.00 0.00 3.95
3017 4200 8.388656 TGTTGTTTCCTATTTCTATACTCCCT 57.611 34.615 0.00 0.00 0.00 4.20
3018 4201 9.457436 TTTGTTGTTTCCTATTTCTATACTCCC 57.543 33.333 0.00 0.00 0.00 4.30
3056 4239 9.256228 GGTTATCCTTTCCCTTTTCTTTATCTT 57.744 33.333 0.00 0.00 0.00 2.40
3057 4240 7.556635 CGGTTATCCTTTCCCTTTTCTTTATCT 59.443 37.037 0.00 0.00 0.00 1.98
3058 4241 7.201794 CCGGTTATCCTTTCCCTTTTCTTTATC 60.202 40.741 0.00 0.00 0.00 1.75
3059 4242 6.605995 CCGGTTATCCTTTCCCTTTTCTTTAT 59.394 38.462 0.00 0.00 0.00 1.40
3060 4243 5.947566 CCGGTTATCCTTTCCCTTTTCTTTA 59.052 40.000 0.00 0.00 0.00 1.85
3061 4244 4.770531 CCGGTTATCCTTTCCCTTTTCTTT 59.229 41.667 0.00 0.00 0.00 2.52
3062 4245 4.043686 TCCGGTTATCCTTTCCCTTTTCTT 59.956 41.667 0.00 0.00 0.00 2.52
3063 4246 3.590182 TCCGGTTATCCTTTCCCTTTTCT 59.410 43.478 0.00 0.00 0.00 2.52
3064 4247 3.959293 TCCGGTTATCCTTTCCCTTTTC 58.041 45.455 0.00 0.00 0.00 2.29
3065 4248 4.391683 TTCCGGTTATCCTTTCCCTTTT 57.608 40.909 0.00 0.00 0.00 2.27
3066 4249 4.391683 TTTCCGGTTATCCTTTCCCTTT 57.608 40.909 0.00 0.00 0.00 3.11
3067 4250 4.391683 TTTTCCGGTTATCCTTTCCCTT 57.608 40.909 0.00 0.00 0.00 3.95
3068 4251 4.603094 ATTTTCCGGTTATCCTTTCCCT 57.397 40.909 0.00 0.00 0.00 4.20
3069 4252 5.687780 TCTATTTTCCGGTTATCCTTTCCC 58.312 41.667 0.00 0.00 0.00 3.97
3070 4253 6.039047 GGTTCTATTTTCCGGTTATCCTTTCC 59.961 42.308 0.00 0.00 0.00 3.13
3071 4254 6.600427 TGGTTCTATTTTCCGGTTATCCTTTC 59.400 38.462 0.00 0.00 0.00 2.62
3072 4255 6.486941 TGGTTCTATTTTCCGGTTATCCTTT 58.513 36.000 0.00 0.00 0.00 3.11
3073 4256 6.069705 TGGTTCTATTTTCCGGTTATCCTT 57.930 37.500 0.00 0.00 0.00 3.36
3074 4257 5.427481 TCTGGTTCTATTTTCCGGTTATCCT 59.573 40.000 0.00 0.00 0.00 3.24
3075 4258 5.677567 TCTGGTTCTATTTTCCGGTTATCC 58.322 41.667 0.00 0.00 0.00 2.59
3076 4259 6.579865 TCTCTGGTTCTATTTTCCGGTTATC 58.420 40.000 0.00 0.00 0.00 1.75
3077 4260 6.555463 TCTCTGGTTCTATTTTCCGGTTAT 57.445 37.500 0.00 0.00 0.00 1.89
3078 4261 6.363167 TTCTCTGGTTCTATTTTCCGGTTA 57.637 37.500 0.00 0.00 0.00 2.85
3079 4262 4.903045 TCTCTGGTTCTATTTTCCGGTT 57.097 40.909 0.00 0.00 0.00 4.44
3080 4263 4.903045 TTCTCTGGTTCTATTTTCCGGT 57.097 40.909 0.00 0.00 0.00 5.28
3081 4264 6.569179 TTTTTCTCTGGTTCTATTTTCCGG 57.431 37.500 0.00 0.00 0.00 5.14
3082 4265 7.816640 TCATTTTTCTCTGGTTCTATTTTCCG 58.183 34.615 0.00 0.00 0.00 4.30
3083 4266 9.981114 TTTCATTTTTCTCTGGTTCTATTTTCC 57.019 29.630 0.00 0.00 0.00 3.13
3088 4271 9.312904 TGGATTTTCATTTTTCTCTGGTTCTAT 57.687 29.630 0.00 0.00 0.00 1.98
3089 4272 8.704849 TGGATTTTCATTTTTCTCTGGTTCTA 57.295 30.769 0.00 0.00 0.00 2.10
3090 4273 7.601705 TGGATTTTCATTTTTCTCTGGTTCT 57.398 32.000 0.00 0.00 0.00 3.01
3091 4274 6.367149 GCTGGATTTTCATTTTTCTCTGGTTC 59.633 38.462 0.00 0.00 0.00 3.62
3092 4275 6.183360 TGCTGGATTTTCATTTTTCTCTGGTT 60.183 34.615 0.00 0.00 0.00 3.67
3093 4276 5.305128 TGCTGGATTTTCATTTTTCTCTGGT 59.695 36.000 0.00 0.00 0.00 4.00
3094 4277 5.786311 TGCTGGATTTTCATTTTTCTCTGG 58.214 37.500 0.00 0.00 0.00 3.86
3095 4278 7.718272 TTTGCTGGATTTTCATTTTTCTCTG 57.282 32.000 0.00 0.00 0.00 3.35
3096 4279 8.735692 TTTTTGCTGGATTTTCATTTTTCTCT 57.264 26.923 0.00 0.00 0.00 3.10
3118 4301 6.128580 GCGGCACTCATTTTTCATACATTTTT 60.129 34.615 0.00 0.00 0.00 1.94
3119 4302 5.348451 GCGGCACTCATTTTTCATACATTTT 59.652 36.000 0.00 0.00 0.00 1.82
3120 4303 4.864247 GCGGCACTCATTTTTCATACATTT 59.136 37.500 0.00 0.00 0.00 2.32
3121 4304 4.423732 GCGGCACTCATTTTTCATACATT 58.576 39.130 0.00 0.00 0.00 2.71
3122 4305 3.181487 GGCGGCACTCATTTTTCATACAT 60.181 43.478 3.07 0.00 0.00 2.29
3123 4306 2.163412 GGCGGCACTCATTTTTCATACA 59.837 45.455 3.07 0.00 0.00 2.29
3124 4307 2.479560 GGGCGGCACTCATTTTTCATAC 60.480 50.000 12.47 0.00 0.00 2.39
3125 4308 1.748493 GGGCGGCACTCATTTTTCATA 59.252 47.619 12.47 0.00 0.00 2.15
3126 4309 0.532115 GGGCGGCACTCATTTTTCAT 59.468 50.000 12.47 0.00 0.00 2.57
3127 4310 0.539438 AGGGCGGCACTCATTTTTCA 60.539 50.000 12.47 0.00 0.00 2.69
3128 4311 0.109132 CAGGGCGGCACTCATTTTTC 60.109 55.000 12.47 0.00 0.00 2.29
3129 4312 1.535204 CCAGGGCGGCACTCATTTTT 61.535 55.000 12.47 0.00 0.00 1.94
3130 4313 1.978617 CCAGGGCGGCACTCATTTT 60.979 57.895 12.47 0.00 0.00 1.82
3131 4314 2.361610 CCAGGGCGGCACTCATTT 60.362 61.111 12.47 0.00 0.00 2.32
3132 4315 3.628646 GACCAGGGCGGCACTCATT 62.629 63.158 12.47 0.00 39.03 2.57
3133 4316 4.101448 GACCAGGGCGGCACTCAT 62.101 66.667 12.47 0.00 39.03 2.90
3143 4326 3.093835 TAATGGGGCCGACCAGGG 61.094 66.667 6.87 0.00 45.20 4.45
3144 4327 2.192175 GTAATGGGGCCGACCAGG 59.808 66.667 6.87 0.00 45.20 4.45
3145 4328 1.451387 GTGTAATGGGGCCGACCAG 60.451 63.158 6.87 0.00 45.20 4.00
3146 4329 2.224877 TGTGTAATGGGGCCGACCA 61.225 57.895 2.90 2.90 46.24 4.02
3147 4330 1.747745 GTGTGTAATGGGGCCGACC 60.748 63.158 0.00 0.00 39.11 4.79
3148 4331 0.743345 GAGTGTGTAATGGGGCCGAC 60.743 60.000 0.00 0.00 0.00 4.79
3149 4332 1.600107 GAGTGTGTAATGGGGCCGA 59.400 57.895 0.00 0.00 0.00 5.54
3150 4333 1.813753 CGAGTGTGTAATGGGGCCG 60.814 63.158 0.00 0.00 0.00 6.13
3151 4334 1.024579 CACGAGTGTGTAATGGGGCC 61.025 60.000 0.00 0.00 41.34 5.80
3152 4335 2.466867 CACGAGTGTGTAATGGGGC 58.533 57.895 0.00 0.00 41.34 5.80
3162 4345 1.067142 ACATATTGACCGCACGAGTGT 60.067 47.619 5.07 0.00 0.00 3.55
3163 4346 1.640428 ACATATTGACCGCACGAGTG 58.360 50.000 0.00 0.00 0.00 3.51
3164 4347 2.426024 ACTACATATTGACCGCACGAGT 59.574 45.455 0.00 0.00 0.00 4.18
3165 4348 3.079960 ACTACATATTGACCGCACGAG 57.920 47.619 0.00 0.00 0.00 4.18
3166 4349 3.513680 AACTACATATTGACCGCACGA 57.486 42.857 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.