Multiple sequence alignment - TraesCS7D01G403800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G403800 chr7D 100.000 3084 0 0 1 3084 520858632 520855549 0.000000e+00 5696.0
1 TraesCS7D01G403800 chr7D 100.000 1051 0 0 3355 4405 520855278 520854228 0.000000e+00 1941.0
2 TraesCS7D01G403800 chr7D 97.266 951 16 4 3464 4405 580610246 580611195 0.000000e+00 1604.0
3 TraesCS7D01G403800 chr7D 92.807 570 30 8 3358 3926 498233027 498232468 0.000000e+00 815.0
4 TraesCS7D01G403800 chr7D 98.165 109 2 0 2976 3084 580610023 580610131 1.620000e-44 191.0
5 TraesCS7D01G403800 chr7D 94.495 109 6 0 2976 3084 498233185 498233077 7.580000e-38 169.0
6 TraesCS7D01G403800 chr7B 92.223 2083 123 16 884 2934 554188170 554186095 0.000000e+00 2913.0
7 TraesCS7D01G403800 chr7B 90.935 1059 70 17 3358 4405 734862253 734861210 0.000000e+00 1400.0
8 TraesCS7D01G403800 chr7B 90.926 1058 72 15 3358 4405 734883144 734882101 0.000000e+00 1400.0
9 TraesCS7D01G403800 chr7B 90.737 1058 74 15 3358 4405 734837776 734836733 0.000000e+00 1389.0
10 TraesCS7D01G403800 chr7B 90.643 1058 74 16 3358 4405 734812828 734811786 0.000000e+00 1382.0
11 TraesCS7D01G403800 chr7B 90.397 479 36 3 2463 2934 201455379 201455854 4.840000e-174 621.0
12 TraesCS7D01G403800 chr2B 92.060 1058 65 10 3358 4405 691361045 691359997 0.000000e+00 1471.0
13 TraesCS7D01G403800 chr2B 86.715 828 80 6 1863 2688 532546024 532546823 0.000000e+00 893.0
14 TraesCS7D01G403800 chr2B 92.683 82 5 1 548 628 485445951 485446032 2.780000e-22 117.0
15 TraesCS7D01G403800 chr6B 91.021 1058 69 17 3358 4405 240336103 240335062 0.000000e+00 1404.0
16 TraesCS7D01G403800 chr6B 87.379 103 8 5 548 646 299623883 299623782 3.600000e-21 113.0
17 TraesCS7D01G403800 chr6B 89.130 92 7 3 548 637 508532918 508532828 1.300000e-20 111.0
18 TraesCS7D01G403800 chrUn 90.832 1058 72 15 3358 4405 401662844 401661802 0.000000e+00 1393.0
19 TraesCS7D01G403800 chrUn 90.481 1061 77 16 3355 4405 165284380 165285426 0.000000e+00 1378.0
20 TraesCS7D01G403800 chrUn 92.280 829 52 9 3380 4201 300913519 300914342 0.000000e+00 1166.0
21 TraesCS7D01G403800 chrUn 92.361 720 44 10 3380 4095 357996971 357997683 0.000000e+00 1014.0
22 TraesCS7D01G403800 chrUn 93.206 471 28 4 3380 3849 372756367 372755900 0.000000e+00 689.0
23 TraesCS7D01G403800 chrUn 95.413 109 5 0 2976 3084 300913372 300913480 1.630000e-39 174.0
24 TraesCS7D01G403800 chrUn 95.413 109 5 0 2976 3084 357996824 357996932 1.630000e-39 174.0
25 TraesCS7D01G403800 chrUn 95.413 109 5 0 2976 3084 372756514 372756406 1.630000e-39 174.0
26 TraesCS7D01G403800 chrUn 94.495 109 6 0 2976 3084 242213780 242213888 7.580000e-38 169.0
27 TraesCS7D01G403800 chrUn 94.495 109 6 0 2976 3084 330053043 330052935 7.580000e-38 169.0
28 TraesCS7D01G403800 chrUn 94.495 109 6 0 2976 3084 401663002 401662894 7.580000e-38 169.0
29 TraesCS7D01G403800 chrUn 88.095 84 5 3 550 629 24932775 24932857 1.300000e-15 95.3
30 TraesCS7D01G403800 chrUn 86.747 83 11 0 546 628 76528644 76528562 4.690000e-15 93.5
31 TraesCS7D01G403800 chrUn 87.059 85 8 3 548 632 224305616 224305535 4.690000e-15 93.5
32 TraesCS7D01G403800 chrUn 88.462 78 8 1 548 625 314595669 314595593 4.690000e-15 93.5
33 TraesCS7D01G403800 chrUn 87.059 85 8 3 548 632 375623345 375623264 4.690000e-15 93.5
34 TraesCS7D01G403800 chrUn 91.045 67 3 3 548 614 8859625 8859562 2.180000e-13 87.9
35 TraesCS7D01G403800 chrUn 85.185 81 10 2 557 635 67012473 67012393 1.020000e-11 82.4
36 TraesCS7D01G403800 chrUn 84.524 84 11 2 554 635 171264789 171264872 1.020000e-11 82.4
37 TraesCS7D01G403800 chrUn 86.667 75 7 3 557 628 171273964 171274038 3.650000e-11 80.5
38 TraesCS7D01G403800 chr7A 87.963 1080 92 9 1078 2135 598293487 598292424 0.000000e+00 1240.0
39 TraesCS7D01G403800 chr7A 90.144 416 41 0 2251 2666 598292373 598291958 3.880000e-150 542.0
40 TraesCS7D01G403800 chr7A 84.973 559 47 16 275 810 598348232 598347688 2.330000e-147 532.0
41 TraesCS7D01G403800 chr7A 95.261 211 10 0 2724 2934 598259765 598259555 7.060000e-88 335.0
42 TraesCS7D01G403800 chr7A 91.765 85 5 2 546 629 141624261 141624344 2.780000e-22 117.0
43 TraesCS7D01G403800 chr7A 91.667 84 5 2 546 628 141016955 141017037 1.000000e-21 115.0
44 TraesCS7D01G403800 chr7A 94.340 53 3 0 2161 2213 598292422 598292370 1.020000e-11 82.4
45 TraesCS7D01G403800 chr6D 91.450 655 36 11 3355 3999 131630717 131631361 0.000000e+00 881.0
46 TraesCS7D01G403800 chr6D 95.413 109 5 0 2976 3084 131630562 131630670 1.630000e-39 174.0
47 TraesCS7D01G403800 chr6D 92.593 81 6 0 548 628 333366258 333366338 2.780000e-22 117.0
48 TraesCS7D01G403800 chr6D 88.043 92 6 5 548 638 315652598 315652511 2.170000e-18 104.0
49 TraesCS7D01G403800 chr6D 90.000 80 7 1 548 627 382344116 382344194 7.790000e-18 102.0
50 TraesCS7D01G403800 chr6D 90.541 74 5 2 557 628 428883679 428883752 3.630000e-16 97.1
51 TraesCS7D01G403800 chr6D 86.747 83 10 1 548 629 62724754 62724836 1.690000e-14 91.6
52 TraesCS7D01G403800 chr5B 91.667 84 6 1 546 628 421288425 421288342 1.000000e-21 115.0
53 TraesCS7D01G403800 chr4D 92.593 81 5 1 549 628 1344351 1344271 1.000000e-21 115.0
54 TraesCS7D01G403800 chr4D 90.698 86 7 1 548 632 504283365 504283280 3.600000e-21 113.0
55 TraesCS7D01G403800 chr4D 90.244 82 6 2 548 628 12695970 12695890 6.030000e-19 106.0
56 TraesCS7D01G403800 chr3D 90.909 88 5 3 548 634 8988947 8989032 1.000000e-21 115.0
57 TraesCS7D01G403800 chr3D 91.463 82 5 2 548 628 39891900 39891980 1.300000e-20 111.0
58 TraesCS7D01G403800 chr5A 90.805 87 5 3 548 633 342458192 342458276 3.600000e-21 113.0
59 TraesCS7D01G403800 chr6A 91.463 82 6 1 548 628 540151673 540151754 1.300000e-20 111.0
60 TraesCS7D01G403800 chr6A 87.640 89 9 2 548 636 79308423 79308337 7.790000e-18 102.0
61 TraesCS7D01G403800 chr2D 91.463 82 6 1 548 629 437953484 437953564 1.300000e-20 111.0
62 TraesCS7D01G403800 chr1D 94.521 73 3 1 556 628 402838395 402838466 1.300000e-20 111.0
63 TraesCS7D01G403800 chr1D 90.476 84 7 1 548 630 483910973 483910890 4.660000e-20 110.0
64 TraesCS7D01G403800 chr1D 90.476 84 7 1 548 630 483927314 483927397 4.660000e-20 110.0
65 TraesCS7D01G403800 chr1D 91.250 80 6 1 549 627 420239587 420239508 1.680000e-19 108.0
66 TraesCS7D01G403800 chr1D 90.123 81 8 0 548 628 18807295 18807375 6.030000e-19 106.0
67 TraesCS7D01G403800 chr1D 91.892 74 4 2 557 628 459867484 459867411 7.790000e-18 102.0
68 TraesCS7D01G403800 chr1D 88.235 85 9 1 545 628 491415883 491415967 2.800000e-17 100.0
69 TraesCS7D01G403800 chr4B 94.366 71 4 0 557 627 119336157 119336087 4.660000e-20 110.0
70 TraesCS7D01G403800 chr4B 91.463 82 3 4 548 628 647646271 647646349 4.660000e-20 110.0
71 TraesCS7D01G403800 chr1A 90.361 83 4 4 546 628 513729182 513729104 6.030000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G403800 chr7D 520854228 520858632 4404 True 3818.500000 5696 100.000000 1 4405 2 chr7D.!!$R2 4404
1 TraesCS7D01G403800 chr7D 580610023 580611195 1172 False 897.500000 1604 97.715500 2976 4405 2 chr7D.!!$F1 1429
2 TraesCS7D01G403800 chr7D 498232468 498233185 717 True 492.000000 815 93.651000 2976 3926 2 chr7D.!!$R1 950
3 TraesCS7D01G403800 chr7B 554186095 554188170 2075 True 2913.000000 2913 92.223000 884 2934 1 chr7B.!!$R1 2050
4 TraesCS7D01G403800 chr7B 734861210 734862253 1043 True 1400.000000 1400 90.935000 3358 4405 1 chr7B.!!$R4 1047
5 TraesCS7D01G403800 chr7B 734882101 734883144 1043 True 1400.000000 1400 90.926000 3358 4405 1 chr7B.!!$R5 1047
6 TraesCS7D01G403800 chr7B 734836733 734837776 1043 True 1389.000000 1389 90.737000 3358 4405 1 chr7B.!!$R3 1047
7 TraesCS7D01G403800 chr7B 734811786 734812828 1042 True 1382.000000 1382 90.643000 3358 4405 1 chr7B.!!$R2 1047
8 TraesCS7D01G403800 chr2B 691359997 691361045 1048 True 1471.000000 1471 92.060000 3358 4405 1 chr2B.!!$R1 1047
9 TraesCS7D01G403800 chr2B 532546024 532546823 799 False 893.000000 893 86.715000 1863 2688 1 chr2B.!!$F2 825
10 TraesCS7D01G403800 chr6B 240335062 240336103 1041 True 1404.000000 1404 91.021000 3358 4405 1 chr6B.!!$R1 1047
11 TraesCS7D01G403800 chrUn 165284380 165285426 1046 False 1378.000000 1378 90.481000 3355 4405 1 chrUn.!!$F2 1050
12 TraesCS7D01G403800 chrUn 401661802 401663002 1200 True 781.000000 1393 92.663500 2976 4405 2 chrUn.!!$R9 1429
13 TraesCS7D01G403800 chrUn 300913372 300914342 970 False 670.000000 1166 93.846500 2976 4201 2 chrUn.!!$F6 1225
14 TraesCS7D01G403800 chrUn 357996824 357997683 859 False 594.000000 1014 93.887000 2976 4095 2 chrUn.!!$F7 1119
15 TraesCS7D01G403800 chrUn 372755900 372756514 614 True 431.500000 689 94.309500 2976 3849 2 chrUn.!!$R8 873
16 TraesCS7D01G403800 chr7A 598291958 598293487 1529 True 621.466667 1240 90.815667 1078 2666 3 chr7A.!!$R3 1588
17 TraesCS7D01G403800 chr7A 598347688 598348232 544 True 532.000000 532 84.973000 275 810 1 chr7A.!!$R2 535
18 TraesCS7D01G403800 chr6D 131630562 131631361 799 False 527.500000 881 93.431500 2976 3999 2 chr6D.!!$F5 1023

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
476 494 0.031585 CTTGACGGAGACACGGTGAA 59.968 55.0 16.29 0.00 38.39 3.18 F
968 991 0.096454 TCGACGTACGACTGCATCTG 59.904 55.0 24.41 1.11 46.45 2.90 F
2599 2672 0.168128 GCCGAAATTTCTGGACACCG 59.832 55.0 24.15 8.44 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1518 1578 0.458025 GGTAGAACCGAGCTTGGTCG 60.458 60.0 26.35 14.26 42.89 4.79 R
2895 2968 0.618458 TGTGGTAGCAATGGGAGGAC 59.382 55.0 0.00 0.00 0.00 3.85 R
3426 3500 0.531532 CTGCAAGCGTCATCCCCTAG 60.532 60.0 0.00 0.00 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.990868 ATATTTGGACTAATGGGAGTTAGTTTT 57.009 29.630 1.36 0.00 43.13 2.43
39 40 7.754851 TTTGGACTAATGGGAGTTAGTTTTC 57.245 36.000 1.36 0.00 43.13 2.29
40 41 6.697641 TGGACTAATGGGAGTTAGTTTTCT 57.302 37.500 1.36 0.00 43.13 2.52
41 42 7.086685 TGGACTAATGGGAGTTAGTTTTCTT 57.913 36.000 1.36 0.00 43.13 2.52
42 43 6.940298 TGGACTAATGGGAGTTAGTTTTCTTG 59.060 38.462 1.36 0.00 43.13 3.02
43 44 6.127980 GGACTAATGGGAGTTAGTTTTCTTGC 60.128 42.308 1.36 0.00 43.13 4.01
44 45 5.710567 ACTAATGGGAGTTAGTTTTCTTGCC 59.289 40.000 0.00 0.00 40.96 4.52
45 46 3.586470 TGGGAGTTAGTTTTCTTGCCA 57.414 42.857 0.00 0.00 0.00 4.92
46 47 3.904717 TGGGAGTTAGTTTTCTTGCCAA 58.095 40.909 0.00 0.00 0.00 4.52
47 48 4.282496 TGGGAGTTAGTTTTCTTGCCAAA 58.718 39.130 0.00 0.00 0.00 3.28
48 49 4.898861 TGGGAGTTAGTTTTCTTGCCAAAT 59.101 37.500 0.00 0.00 0.00 2.32
49 50 6.071984 TGGGAGTTAGTTTTCTTGCCAAATA 58.928 36.000 0.00 0.00 0.00 1.40
50 51 6.551601 TGGGAGTTAGTTTTCTTGCCAAATAA 59.448 34.615 0.00 0.00 0.00 1.40
51 52 7.070074 TGGGAGTTAGTTTTCTTGCCAAATAAA 59.930 33.333 0.00 0.00 0.00 1.40
52 53 7.929245 GGGAGTTAGTTTTCTTGCCAAATAAAA 59.071 33.333 0.00 0.00 0.00 1.52
53 54 9.489084 GGAGTTAGTTTTCTTGCCAAATAAAAT 57.511 29.630 1.97 0.00 0.00 1.82
62 63 8.956533 TTCTTGCCAAATAAAATATAAAGCCC 57.043 30.769 0.00 0.00 0.00 5.19
63 64 7.505258 TCTTGCCAAATAAAATATAAAGCCCC 58.495 34.615 0.00 0.00 0.00 5.80
64 65 6.181206 TGCCAAATAAAATATAAAGCCCCC 57.819 37.500 0.00 0.00 0.00 5.40
65 66 5.908247 TGCCAAATAAAATATAAAGCCCCCT 59.092 36.000 0.00 0.00 0.00 4.79
66 67 6.388394 TGCCAAATAAAATATAAAGCCCCCTT 59.612 34.615 0.00 0.00 0.00 3.95
67 68 7.092219 TGCCAAATAAAATATAAAGCCCCCTTT 60.092 33.333 0.00 0.00 43.43 3.11
68 69 7.777910 GCCAAATAAAATATAAAGCCCCCTTTT 59.222 33.333 0.00 0.00 41.37 2.27
79 80 5.968676 AAGCCCCCTTTTAAATAATTCCC 57.031 39.130 0.00 0.00 0.00 3.97
80 81 5.235003 AGCCCCCTTTTAAATAATTCCCT 57.765 39.130 0.00 0.00 0.00 4.20
81 82 5.609782 AGCCCCCTTTTAAATAATTCCCTT 58.390 37.500 0.00 0.00 0.00 3.95
82 83 6.035973 AGCCCCCTTTTAAATAATTCCCTTT 58.964 36.000 0.00 0.00 0.00 3.11
83 84 6.507485 AGCCCCCTTTTAAATAATTCCCTTTT 59.493 34.615 0.00 0.00 0.00 2.27
84 85 7.019153 AGCCCCCTTTTAAATAATTCCCTTTTT 59.981 33.333 0.00 0.00 0.00 1.94
85 86 7.122055 GCCCCCTTTTAAATAATTCCCTTTTTG 59.878 37.037 0.00 0.00 0.00 2.44
86 87 8.167392 CCCCCTTTTAAATAATTCCCTTTTTGT 58.833 33.333 0.00 0.00 0.00 2.83
87 88 9.008965 CCCCTTTTAAATAATTCCCTTTTTGTG 57.991 33.333 0.00 0.00 0.00 3.33
88 89 9.785982 CCCTTTTAAATAATTCCCTTTTTGTGA 57.214 29.630 0.00 0.00 0.00 3.58
96 97 9.859152 AATAATTCCCTTTTTGTGATTTTTGGA 57.141 25.926 0.00 0.00 0.00 3.53
98 99 8.765488 AATTCCCTTTTTGTGATTTTTGGATT 57.235 26.923 0.00 0.00 0.00 3.01
99 100 7.565323 TTCCCTTTTTGTGATTTTTGGATTG 57.435 32.000 0.00 0.00 0.00 2.67
100 101 6.893583 TCCCTTTTTGTGATTTTTGGATTGA 58.106 32.000 0.00 0.00 0.00 2.57
101 102 7.516452 TCCCTTTTTGTGATTTTTGGATTGAT 58.484 30.769 0.00 0.00 0.00 2.57
102 103 7.997803 TCCCTTTTTGTGATTTTTGGATTGATT 59.002 29.630 0.00 0.00 0.00 2.57
103 104 8.291740 CCCTTTTTGTGATTTTTGGATTGATTC 58.708 33.333 0.00 0.00 0.00 2.52
104 105 8.838365 CCTTTTTGTGATTTTTGGATTGATTCA 58.162 29.630 0.00 0.00 0.00 2.57
124 125 9.352784 TGATTCAAAAATCAAATCCACGTTATC 57.647 29.630 0.00 0.00 46.41 1.75
125 126 9.352784 GATTCAAAAATCAAATCCACGTTATCA 57.647 29.630 0.00 0.00 40.90 2.15
126 127 8.741101 TTCAAAAATCAAATCCACGTTATCAG 57.259 30.769 0.00 0.00 0.00 2.90
127 128 8.105097 TCAAAAATCAAATCCACGTTATCAGA 57.895 30.769 0.00 0.00 0.00 3.27
128 129 8.572185 TCAAAAATCAAATCCACGTTATCAGAA 58.428 29.630 0.00 0.00 0.00 3.02
129 130 8.853345 CAAAAATCAAATCCACGTTATCAGAAG 58.147 33.333 0.00 0.00 0.00 2.85
130 131 5.741388 ATCAAATCCACGTTATCAGAAGC 57.259 39.130 0.00 0.00 0.00 3.86
131 132 4.832248 TCAAATCCACGTTATCAGAAGCT 58.168 39.130 0.00 0.00 0.00 3.74
132 133 5.245531 TCAAATCCACGTTATCAGAAGCTT 58.754 37.500 0.00 0.00 0.00 3.74
133 134 6.403049 TCAAATCCACGTTATCAGAAGCTTA 58.597 36.000 0.00 0.00 0.00 3.09
134 135 6.876789 TCAAATCCACGTTATCAGAAGCTTAA 59.123 34.615 0.00 0.00 0.00 1.85
135 136 7.389330 TCAAATCCACGTTATCAGAAGCTTAAA 59.611 33.333 0.00 0.00 0.00 1.52
136 137 7.865706 AATCCACGTTATCAGAAGCTTAAAT 57.134 32.000 0.00 0.00 0.00 1.40
137 138 8.958119 AATCCACGTTATCAGAAGCTTAAATA 57.042 30.769 0.00 0.00 0.00 1.40
138 139 9.561069 AATCCACGTTATCAGAAGCTTAAATAT 57.439 29.630 0.00 0.00 0.00 1.28
139 140 8.958119 TCCACGTTATCAGAAGCTTAAATATT 57.042 30.769 0.00 0.00 0.00 1.28
195 196 9.634163 CCCAACTAAATTAGTTAATTTGTCACC 57.366 33.333 16.94 0.00 46.66 4.02
196 197 9.634163 CCAACTAAATTAGTTAATTTGTCACCC 57.366 33.333 16.94 0.00 46.66 4.61
204 205 8.712285 TTAGTTAATTTGTCACCCTATTCTCG 57.288 34.615 0.00 0.00 0.00 4.04
205 206 6.113411 AGTTAATTTGTCACCCTATTCTCGG 58.887 40.000 0.00 0.00 0.00 4.63
206 207 4.837093 AATTTGTCACCCTATTCTCGGA 57.163 40.909 0.00 0.00 0.00 4.55
207 208 3.604875 TTTGTCACCCTATTCTCGGAC 57.395 47.619 0.00 0.00 0.00 4.79
208 209 2.526888 TGTCACCCTATTCTCGGACT 57.473 50.000 0.00 0.00 0.00 3.85
209 210 2.816411 TGTCACCCTATTCTCGGACTT 58.184 47.619 0.00 0.00 0.00 3.01
210 211 2.758979 TGTCACCCTATTCTCGGACTTC 59.241 50.000 0.00 0.00 0.00 3.01
211 212 2.758979 GTCACCCTATTCTCGGACTTCA 59.241 50.000 0.00 0.00 0.00 3.02
212 213 3.194968 GTCACCCTATTCTCGGACTTCAA 59.805 47.826 0.00 0.00 0.00 2.69
213 214 4.030913 TCACCCTATTCTCGGACTTCAAT 58.969 43.478 0.00 0.00 0.00 2.57
214 215 4.469945 TCACCCTATTCTCGGACTTCAATT 59.530 41.667 0.00 0.00 0.00 2.32
215 216 5.659525 TCACCCTATTCTCGGACTTCAATTA 59.340 40.000 0.00 0.00 0.00 1.40
216 217 6.326583 TCACCCTATTCTCGGACTTCAATTAT 59.673 38.462 0.00 0.00 0.00 1.28
217 218 6.992715 CACCCTATTCTCGGACTTCAATTATT 59.007 38.462 0.00 0.00 0.00 1.40
218 219 7.171678 CACCCTATTCTCGGACTTCAATTATTC 59.828 40.741 0.00 0.00 0.00 1.75
219 220 6.651225 CCCTATTCTCGGACTTCAATTATTCC 59.349 42.308 0.00 0.00 0.00 3.01
220 221 6.651225 CCTATTCTCGGACTTCAATTATTCCC 59.349 42.308 0.00 0.00 0.00 3.97
221 222 5.693769 TTCTCGGACTTCAATTATTCCCT 57.306 39.130 0.00 0.00 0.00 4.20
222 223 6.801718 TTCTCGGACTTCAATTATTCCCTA 57.198 37.500 0.00 0.00 0.00 3.53
223 224 6.801718 TCTCGGACTTCAATTATTCCCTAA 57.198 37.500 0.00 0.00 0.00 2.69
224 225 7.374975 TCTCGGACTTCAATTATTCCCTAAT 57.625 36.000 0.00 0.00 0.00 1.73
225 226 7.802117 TCTCGGACTTCAATTATTCCCTAATT 58.198 34.615 0.00 0.00 40.02 1.40
226 227 8.272173 TCTCGGACTTCAATTATTCCCTAATTT 58.728 33.333 0.00 0.00 37.84 1.82
227 228 8.817092 TCGGACTTCAATTATTCCCTAATTTT 57.183 30.769 0.00 0.00 37.84 1.82
228 229 9.250246 TCGGACTTCAATTATTCCCTAATTTTT 57.750 29.630 0.00 0.00 37.84 1.94
249 250 9.780186 ATTTTTACGGTTCATTTTAATTTCCCA 57.220 25.926 0.00 0.00 0.00 4.37
250 251 9.609346 TTTTTACGGTTCATTTTAATTTCCCAA 57.391 25.926 0.00 0.00 0.00 4.12
251 252 9.780186 TTTTACGGTTCATTTTAATTTCCCAAT 57.220 25.926 0.00 0.00 0.00 3.16
252 253 9.780186 TTTACGGTTCATTTTAATTTCCCAATT 57.220 25.926 0.00 0.00 36.52 2.32
253 254 9.780186 TTACGGTTCATTTTAATTTCCCAATTT 57.220 25.926 0.00 0.00 34.29 1.82
254 255 8.684386 ACGGTTCATTTTAATTTCCCAATTTT 57.316 26.923 0.00 0.00 34.29 1.82
255 256 8.563732 ACGGTTCATTTTAATTTCCCAATTTTG 58.436 29.630 0.00 0.00 34.29 2.44
256 257 8.778358 CGGTTCATTTTAATTTCCCAATTTTGA 58.222 29.630 0.00 0.00 34.29 2.69
263 264 8.860780 TTTAATTTCCCAATTTTGAATCAGGG 57.139 30.769 0.00 0.00 34.29 4.45
264 265 6.452757 AATTTCCCAATTTTGAATCAGGGT 57.547 33.333 4.68 0.00 37.56 4.34
265 266 5.903198 TTTCCCAATTTTGAATCAGGGTT 57.097 34.783 4.68 0.00 37.56 4.11
266 267 5.482163 TTCCCAATTTTGAATCAGGGTTC 57.518 39.130 4.68 0.00 37.56 3.62
267 268 4.487804 TCCCAATTTTGAATCAGGGTTCA 58.512 39.130 4.68 0.00 37.56 3.18
268 269 4.904251 TCCCAATTTTGAATCAGGGTTCAA 59.096 37.500 3.68 3.68 44.05 2.69
269 270 5.547276 TCCCAATTTTGAATCAGGGTTCAAT 59.453 36.000 8.41 0.00 44.80 2.57
270 271 6.728164 TCCCAATTTTGAATCAGGGTTCAATA 59.272 34.615 8.41 4.82 44.80 1.90
271 272 7.402650 TCCCAATTTTGAATCAGGGTTCAATAT 59.597 33.333 8.41 6.81 44.80 1.28
272 273 8.048514 CCCAATTTTGAATCAGGGTTCAATATT 58.951 33.333 14.11 14.11 44.80 1.28
277 278 6.866010 TGAATCAGGGTTCAATATTGATCG 57.134 37.500 18.61 6.33 37.00 3.69
308 309 2.416747 CATCAAGCGTCAAACTCCTCA 58.583 47.619 0.00 0.00 0.00 3.86
311 312 1.070577 CAAGCGTCAAACTCCTCAACG 60.071 52.381 0.00 0.00 36.48 4.10
315 316 1.072505 TCAAACTCCTCAACGGGGC 59.927 57.895 0.00 0.00 36.36 5.80
316 317 2.032071 AAACTCCTCAACGGGGCG 59.968 61.111 0.00 0.00 36.36 6.13
317 318 4.699522 AACTCCTCAACGGGGCGC 62.700 66.667 0.00 0.00 36.36 6.53
332 340 1.132640 GCGCGACTTCACCAATGAC 59.867 57.895 12.10 0.00 33.38 3.06
335 343 1.453155 GCGACTTCACCAATGACCAT 58.547 50.000 0.00 0.00 33.38 3.55
342 350 2.513753 TCACCAATGACCATCACCAAC 58.486 47.619 0.00 0.00 0.00 3.77
345 353 1.739466 CCAATGACCATCACCAACGAG 59.261 52.381 0.00 0.00 0.00 4.18
351 359 0.608130 CCATCACCAACGAGACCTCA 59.392 55.000 0.00 0.00 0.00 3.86
353 361 2.274437 CATCACCAACGAGACCTCATG 58.726 52.381 0.00 0.00 0.00 3.07
354 362 1.338107 TCACCAACGAGACCTCATGT 58.662 50.000 0.00 0.00 0.00 3.21
355 363 1.272490 TCACCAACGAGACCTCATGTC 59.728 52.381 0.00 0.00 44.82 3.06
377 387 3.079578 ACACATCAAAGACTCATGCCAG 58.920 45.455 0.00 0.00 0.00 4.85
383 393 3.711190 TCAAAGACTCATGCCAGCCTATA 59.289 43.478 0.00 0.00 0.00 1.31
385 395 4.989875 AAGACTCATGCCAGCCTATAAT 57.010 40.909 0.00 0.00 0.00 1.28
386 396 6.043127 TCAAAGACTCATGCCAGCCTATAATA 59.957 38.462 0.00 0.00 0.00 0.98
388 398 6.232581 AGACTCATGCCAGCCTATAATATC 57.767 41.667 0.00 0.00 0.00 1.63
402 412 6.745474 GCCTATAATATCAGACCCTTGCAACT 60.745 42.308 0.00 0.00 0.00 3.16
407 425 0.109342 CAGACCCTTGCAACTGACCT 59.891 55.000 8.68 0.00 32.90 3.85
424 442 0.620030 CCTCCCACCATGTGTCATCA 59.380 55.000 0.00 0.00 0.00 3.07
455 473 1.974957 TGCACCTTGTTAGTAGCTCCA 59.025 47.619 0.00 0.00 0.00 3.86
459 477 4.642429 CACCTTGTTAGTAGCTCCAACTT 58.358 43.478 0.00 0.00 0.00 2.66
462 480 4.691216 CCTTGTTAGTAGCTCCAACTTGAC 59.309 45.833 0.00 0.00 0.00 3.18
465 483 1.629043 AGTAGCTCCAACTTGACGGA 58.371 50.000 0.00 0.00 0.00 4.69
473 491 0.249322 CAACTTGACGGAGACACGGT 60.249 55.000 0.00 0.00 38.39 4.83
476 494 0.031585 CTTGACGGAGACACGGTGAA 59.968 55.000 16.29 0.00 38.39 3.18
491 509 2.361737 GAAGCACAAGGGCCCCTC 60.362 66.667 21.43 2.86 30.89 4.30
497 515 0.474184 CACAAGGGCCCCTCGAATAT 59.526 55.000 21.43 0.00 30.89 1.28
519 537 1.033574 GGGATGAGACCGACTACCAG 58.966 60.000 0.00 0.00 0.00 4.00
522 540 2.758979 GGATGAGACCGACTACCAGAAA 59.241 50.000 0.00 0.00 0.00 2.52
531 549 2.047655 TACCAGAAACCAGCCGCG 60.048 61.111 0.00 0.00 0.00 6.46
544 562 2.124901 CCGCGGCCCAAGTCATAA 60.125 61.111 14.67 0.00 0.00 1.90
554 572 5.408604 CGGCCCAAGTCATAATAGATGTAAC 59.591 44.000 0.00 0.00 0.00 2.50
594 612 5.755861 TGTTCGTTGTACTGTCATGATTGAA 59.244 36.000 0.00 0.00 32.48 2.69
595 613 6.258947 TGTTCGTTGTACTGTCATGATTGAAA 59.741 34.615 0.00 0.00 32.48 2.69
698 720 7.387948 GCGAGGGAATACTCATGTATAATTGTT 59.612 37.037 0.00 0.00 38.33 2.83
741 764 1.668047 GGACTCTGCTGTGCATTTTGC 60.668 52.381 0.00 0.00 45.29 3.68
766 789 9.392021 GCATATTTACCATTTTTGTTTGTTTGG 57.608 29.630 0.00 0.00 0.00 3.28
767 790 9.890352 CATATTTACCATTTTTGTTTGTTTGGG 57.110 29.630 0.00 0.00 0.00 4.12
768 791 7.946381 ATTTACCATTTTTGTTTGTTTGGGT 57.054 28.000 0.00 0.00 0.00 4.51
769 792 6.743575 TTACCATTTTTGTTTGTTTGGGTG 57.256 33.333 0.00 0.00 0.00 4.61
779 802 4.691216 TGTTTGTTTGGGTGTTTGTAAAGC 59.309 37.500 0.00 0.00 0.00 3.51
797 820 9.593134 TTGTAAAGCACAAATGTACAAAAAGAT 57.407 25.926 0.00 0.00 44.20 2.40
834 857 1.253100 TTTTTCCGTGCCCTGATTCC 58.747 50.000 0.00 0.00 0.00 3.01
835 858 0.404040 TTTTCCGTGCCCTGATTCCT 59.596 50.000 0.00 0.00 0.00 3.36
836 859 0.322456 TTTCCGTGCCCTGATTCCTG 60.322 55.000 0.00 0.00 0.00 3.86
837 860 2.124570 CCGTGCCCTGATTCCTGG 60.125 66.667 0.00 0.00 0.00 4.45
838 861 2.671070 CGTGCCCTGATTCCTGGT 59.329 61.111 0.00 0.00 0.00 4.00
839 862 1.002134 CGTGCCCTGATTCCTGGTT 60.002 57.895 0.00 0.00 0.00 3.67
840 863 1.308069 CGTGCCCTGATTCCTGGTTG 61.308 60.000 0.00 0.00 0.00 3.77
841 864 1.304381 TGCCCTGATTCCTGGTTGC 60.304 57.895 0.00 0.00 0.00 4.17
842 865 1.304381 GCCCTGATTCCTGGTTGCA 60.304 57.895 0.00 0.00 0.00 4.08
843 866 0.685458 GCCCTGATTCCTGGTTGCAT 60.685 55.000 0.00 0.00 0.00 3.96
844 867 1.856629 CCCTGATTCCTGGTTGCATT 58.143 50.000 0.00 0.00 0.00 3.56
845 868 2.181975 CCCTGATTCCTGGTTGCATTT 58.818 47.619 0.00 0.00 0.00 2.32
846 869 2.093869 CCCTGATTCCTGGTTGCATTTG 60.094 50.000 0.00 0.00 0.00 2.32
847 870 2.827322 CCTGATTCCTGGTTGCATTTGA 59.173 45.455 0.00 0.00 0.00 2.69
848 871 3.119245 CCTGATTCCTGGTTGCATTTGAG 60.119 47.826 0.00 0.00 0.00 3.02
849 872 3.760151 CTGATTCCTGGTTGCATTTGAGA 59.240 43.478 0.00 0.00 0.00 3.27
850 873 4.151121 TGATTCCTGGTTGCATTTGAGAA 58.849 39.130 0.00 0.00 0.00 2.87
851 874 4.588106 TGATTCCTGGTTGCATTTGAGAAA 59.412 37.500 0.00 0.00 0.00 2.52
852 875 4.589216 TTCCTGGTTGCATTTGAGAAAG 57.411 40.909 0.00 0.00 0.00 2.62
853 876 3.831323 TCCTGGTTGCATTTGAGAAAGA 58.169 40.909 0.00 0.00 0.00 2.52
854 877 3.569701 TCCTGGTTGCATTTGAGAAAGAC 59.430 43.478 0.00 0.00 0.00 3.01
855 878 3.571401 CCTGGTTGCATTTGAGAAAGACT 59.429 43.478 0.00 0.00 0.00 3.24
856 879 4.320788 CCTGGTTGCATTTGAGAAAGACTC 60.321 45.833 0.00 0.00 45.11 3.36
869 892 4.322567 AGAAAGACTCAAGGAAGACATGC 58.677 43.478 0.00 0.00 0.00 4.06
870 893 4.041444 AGAAAGACTCAAGGAAGACATGCT 59.959 41.667 0.00 0.00 0.00 3.79
871 894 3.608316 AGACTCAAGGAAGACATGCTC 57.392 47.619 0.00 0.00 0.00 4.26
872 895 3.172339 AGACTCAAGGAAGACATGCTCT 58.828 45.455 0.00 0.00 0.00 4.09
873 896 3.582208 AGACTCAAGGAAGACATGCTCTT 59.418 43.478 9.42 9.42 42.40 2.85
874 897 3.672808 ACTCAAGGAAGACATGCTCTTG 58.327 45.455 13.14 11.39 39.53 3.02
875 898 3.072184 ACTCAAGGAAGACATGCTCTTGT 59.928 43.478 13.14 4.04 39.53 3.16
876 899 4.070716 CTCAAGGAAGACATGCTCTTGTT 58.929 43.478 13.14 6.09 39.53 2.83
877 900 3.817084 TCAAGGAAGACATGCTCTTGTTG 59.183 43.478 13.14 14.34 39.53 3.33
878 901 3.777106 AGGAAGACATGCTCTTGTTGA 57.223 42.857 13.14 0.00 39.53 3.18
879 902 4.298103 AGGAAGACATGCTCTTGTTGAT 57.702 40.909 13.14 0.00 39.53 2.57
880 903 4.260170 AGGAAGACATGCTCTTGTTGATC 58.740 43.478 13.14 0.00 39.53 2.92
881 904 3.063180 GGAAGACATGCTCTTGTTGATCG 59.937 47.826 13.14 0.00 39.53 3.69
882 905 3.599730 AGACATGCTCTTGTTGATCGA 57.400 42.857 0.00 0.00 0.00 3.59
898 921 2.093473 CGAGAGTCGGAGTCGTCGT 61.093 63.158 18.34 0.86 36.00 4.34
908 931 0.448197 GAGTCGTCGTGCTCAGATCA 59.552 55.000 12.30 0.00 0.00 2.92
914 937 1.203523 GTCGTGCTCAGATCACTTCCT 59.796 52.381 2.99 0.00 32.54 3.36
925 948 1.699730 TCACTTCCTGTCCGACTTCA 58.300 50.000 0.00 0.00 0.00 3.02
928 951 2.232452 CACTTCCTGTCCGACTTCATCT 59.768 50.000 0.00 0.00 0.00 2.90
930 953 0.532573 TCCTGTCCGACTTCATCTGC 59.467 55.000 0.00 0.00 0.00 4.26
936 959 1.623311 TCCGACTTCATCTGCTTCCAA 59.377 47.619 0.00 0.00 0.00 3.53
940 963 3.555139 CGACTTCATCTGCTTCCAATCTC 59.445 47.826 0.00 0.00 0.00 2.75
967 990 2.463592 TCGACGTACGACTGCATCT 58.536 52.632 24.41 0.00 46.45 2.90
968 991 0.096454 TCGACGTACGACTGCATCTG 59.904 55.000 24.41 1.11 46.45 2.90
969 992 1.464429 CGACGTACGACTGCATCTGC 61.464 60.000 24.41 0.00 45.77 4.26
1040 1079 1.878522 CGCACGTAGGCTTGGCTAG 60.879 63.158 4.09 0.00 0.00 3.42
1060 1099 3.837355 AGCTCCCAAAGTGTTTCTCAAT 58.163 40.909 0.00 0.00 0.00 2.57
1067 1106 5.278463 CCCAAAGTGTTTCTCAATCAACGAT 60.278 40.000 0.00 0.00 0.00 3.73
1112 1151 2.979197 CTCGCCACTTCGTCCGTCT 61.979 63.158 0.00 0.00 0.00 4.18
1194 1233 2.029964 GACGCCAAGTGGACGGAA 59.970 61.111 15.32 0.00 38.43 4.30
1596 1656 2.883253 GCCGAGCTCGAGCAGTTC 60.883 66.667 36.87 24.72 45.16 3.01
1704 1764 1.674817 GCTGGCATCAAAGCAAAGCAT 60.675 47.619 0.00 0.00 42.16 3.79
1733 1793 1.882989 GACGACCTCCTGCTGCTCTT 61.883 60.000 0.00 0.00 0.00 2.85
1772 1832 3.195698 GGCGGACGACATGAAGGC 61.196 66.667 0.00 0.00 0.00 4.35
1835 1895 2.956964 CGTCGAAGCCATCCTCGC 60.957 66.667 0.00 0.00 0.00 5.03
2038 2109 0.177604 CAAGCTCGAATCCTGCCTCT 59.822 55.000 0.00 0.00 0.00 3.69
2044 2115 1.299773 GAATCCTGCCTCTCGCTCG 60.300 63.158 0.00 0.00 38.78 5.03
2562 2635 2.561885 CACTCGTCGTTCCTCGCT 59.438 61.111 0.00 0.00 39.67 4.93
2599 2672 0.168128 GCCGAAATTTCTGGACACCG 59.832 55.000 24.15 8.44 0.00 4.94
2607 2680 1.112916 TTCTGGACACCGTGAGCTCA 61.113 55.000 13.74 13.74 0.00 4.26
2671 2744 4.237445 ATGCCAGCATCACAGAGC 57.763 55.556 0.00 0.00 29.42 4.09
2700 2773 4.554363 CTAGGACGCCGGTGCTCG 62.554 72.222 16.69 6.24 41.47 5.03
2729 2802 1.669115 CACTCCCAGCACCAAGTCG 60.669 63.158 0.00 0.00 0.00 4.18
2764 2837 2.718073 CCAGCAAGGAGGCAATGGC 61.718 63.158 0.00 0.00 41.22 4.40
2802 2875 3.246619 GTTTCTACGGACAGAGCTTGAG 58.753 50.000 0.00 0.00 0.00 3.02
2861 2934 3.733443 ACCAACATTTGAGCTGGAAAC 57.267 42.857 0.00 0.00 32.97 2.78
2895 2968 0.039617 CGAAGGAGAGCGCCTATCTG 60.040 60.000 2.29 0.00 37.26 2.90
2931 3004 1.741401 CATCAACTTCCTCGCCGCA 60.741 57.895 0.00 0.00 0.00 5.69
2934 3007 4.008933 AACTTCCTCGCCGCAGCT 62.009 61.111 0.00 0.00 36.60 4.24
2935 3008 4.749310 ACTTCCTCGCCGCAGCTG 62.749 66.667 10.11 10.11 36.60 4.24
2936 3009 4.441695 CTTCCTCGCCGCAGCTGA 62.442 66.667 20.43 0.00 36.60 4.26
2937 3010 4.441695 TTCCTCGCCGCAGCTGAG 62.442 66.667 20.43 15.45 38.53 3.35
2940 3013 4.731612 CTCGCCGCAGCTGAGTGT 62.732 66.667 20.43 0.00 35.95 3.55
2941 3014 4.724602 TCGCCGCAGCTGAGTGTC 62.725 66.667 20.43 4.73 36.60 3.67
2942 3015 4.731612 CGCCGCAGCTGAGTGTCT 62.732 66.667 20.43 0.00 36.60 3.41
2943 3016 2.573869 GCCGCAGCTGAGTGTCTA 59.426 61.111 20.43 0.00 35.50 2.59
2944 3017 1.518133 GCCGCAGCTGAGTGTCTAG 60.518 63.158 20.43 0.84 35.50 2.43
2945 3018 1.140589 CCGCAGCTGAGTGTCTAGG 59.859 63.158 20.43 2.86 0.00 3.02
2946 3019 1.315981 CCGCAGCTGAGTGTCTAGGA 61.316 60.000 20.43 0.00 0.00 2.94
2947 3020 0.528017 CGCAGCTGAGTGTCTAGGAA 59.472 55.000 20.43 0.00 0.00 3.36
2948 3021 1.135915 CGCAGCTGAGTGTCTAGGAAT 59.864 52.381 20.43 0.00 0.00 3.01
2949 3022 2.797792 CGCAGCTGAGTGTCTAGGAATC 60.798 54.545 20.43 0.00 0.00 2.52
2950 3023 2.167281 GCAGCTGAGTGTCTAGGAATCA 59.833 50.000 20.43 0.00 0.00 2.57
2951 3024 3.737663 GCAGCTGAGTGTCTAGGAATCAG 60.738 52.174 20.43 12.92 40.26 2.90
2952 3025 3.446873 CAGCTGAGTGTCTAGGAATCAGT 59.553 47.826 8.42 4.45 39.63 3.41
2953 3026 3.699038 AGCTGAGTGTCTAGGAATCAGTC 59.301 47.826 16.46 11.32 39.63 3.51
2954 3027 3.488384 GCTGAGTGTCTAGGAATCAGTCG 60.488 52.174 16.46 9.25 39.63 4.18
2955 3028 3.942115 CTGAGTGTCTAGGAATCAGTCGA 59.058 47.826 10.33 0.00 35.18 4.20
2956 3029 4.527944 TGAGTGTCTAGGAATCAGTCGAT 58.472 43.478 0.00 0.00 35.18 3.59
2957 3030 4.950475 TGAGTGTCTAGGAATCAGTCGATT 59.050 41.667 0.00 0.00 44.75 3.34
2958 3031 5.163612 TGAGTGTCTAGGAATCAGTCGATTG 60.164 44.000 0.68 0.68 42.06 2.67
2959 3032 4.950475 AGTGTCTAGGAATCAGTCGATTGA 59.050 41.667 13.38 13.38 42.06 2.57
2960 3033 5.067153 AGTGTCTAGGAATCAGTCGATTGAG 59.933 44.000 16.14 1.87 42.06 3.02
2961 3034 4.202060 TGTCTAGGAATCAGTCGATTGAGC 60.202 45.833 16.14 10.25 42.06 4.26
2962 3035 2.611225 AGGAATCAGTCGATTGAGCC 57.389 50.000 16.14 17.74 42.06 4.70
2963 3036 1.139853 AGGAATCAGTCGATTGAGCCC 59.860 52.381 21.37 19.64 42.06 5.19
2964 3037 1.134401 GGAATCAGTCGATTGAGCCCA 60.134 52.381 16.14 0.00 42.06 5.36
2965 3038 2.632377 GAATCAGTCGATTGAGCCCAA 58.368 47.619 16.14 0.00 42.06 4.12
2966 3039 2.787473 ATCAGTCGATTGAGCCCAAA 57.213 45.000 16.14 0.00 35.67 3.28
2967 3040 2.787473 TCAGTCGATTGAGCCCAAAT 57.213 45.000 6.51 0.00 35.67 2.32
2968 3041 2.358957 TCAGTCGATTGAGCCCAAATG 58.641 47.619 6.51 0.00 35.67 2.32
2969 3042 2.027285 TCAGTCGATTGAGCCCAAATGA 60.027 45.455 6.51 0.00 35.67 2.57
2970 3043 2.353889 CAGTCGATTGAGCCCAAATGAG 59.646 50.000 0.86 0.00 35.67 2.90
2971 3044 2.026822 AGTCGATTGAGCCCAAATGAGT 60.027 45.455 0.00 0.00 35.67 3.41
2972 3045 2.352960 GTCGATTGAGCCCAAATGAGTC 59.647 50.000 0.00 0.00 35.67 3.36
2973 3046 2.237143 TCGATTGAGCCCAAATGAGTCT 59.763 45.455 0.00 0.00 35.67 3.24
2974 3047 2.611292 CGATTGAGCCCAAATGAGTCTC 59.389 50.000 0.00 0.00 35.67 3.36
3374 3447 3.969117 CTTGTGTACACATGCAACTGT 57.031 42.857 28.35 0.00 41.52 3.55
3497 3571 0.984961 CCTTCTCCTGATGCCCTCCA 60.985 60.000 0.00 0.00 0.00 3.86
3587 3662 3.758554 GACATGCAACTGTGGGACTAAAT 59.241 43.478 0.00 0.00 0.00 1.40
3729 3806 2.120282 CATGGCCCGCATGCAGTTA 61.120 57.895 19.57 0.00 0.00 2.24
3770 3855 4.769859 GCAATTGGCATCCAACAAAAAT 57.230 36.364 7.72 0.00 46.95 1.82
3771 3856 5.876612 GCAATTGGCATCCAACAAAAATA 57.123 34.783 7.72 0.00 46.95 1.40
3772 3857 6.251655 GCAATTGGCATCCAACAAAAATAA 57.748 33.333 7.72 0.00 46.95 1.40
3773 3858 6.675987 GCAATTGGCATCCAACAAAAATAAA 58.324 32.000 7.72 0.00 46.95 1.40
3945 4052 1.750399 GACATGGCCCGCATGACTT 60.750 57.895 8.47 0.00 34.39 3.01
4059 4166 4.282950 ACACATATGAAAATGCAGCTCG 57.717 40.909 10.38 0.00 0.00 5.03
4215 4327 2.873557 ATCCTCATCGTCACCCCGGT 62.874 60.000 0.00 0.00 0.00 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 9.990868 AAAACTAACTCCCATTAGTCCAAATAT 57.009 29.630 0.00 0.00 43.17 1.28
13 14 9.457436 GAAAACTAACTCCCATTAGTCCAAATA 57.543 33.333 0.00 0.00 43.17 1.40
14 15 8.170730 AGAAAACTAACTCCCATTAGTCCAAAT 58.829 33.333 0.00 0.00 43.17 2.32
15 16 7.523415 AGAAAACTAACTCCCATTAGTCCAAA 58.477 34.615 0.00 0.00 43.17 3.28
16 17 7.086685 AGAAAACTAACTCCCATTAGTCCAA 57.913 36.000 0.00 0.00 43.17 3.53
17 18 6.697641 AGAAAACTAACTCCCATTAGTCCA 57.302 37.500 0.00 0.00 43.17 4.02
18 19 6.127980 GCAAGAAAACTAACTCCCATTAGTCC 60.128 42.308 0.00 0.00 43.17 3.85
19 20 6.127980 GGCAAGAAAACTAACTCCCATTAGTC 60.128 42.308 0.00 0.00 43.17 2.59
20 21 5.710567 GGCAAGAAAACTAACTCCCATTAGT 59.289 40.000 0.00 0.00 45.36 2.24
21 22 5.710099 TGGCAAGAAAACTAACTCCCATTAG 59.290 40.000 0.00 0.00 38.03 1.73
22 23 5.636123 TGGCAAGAAAACTAACTCCCATTA 58.364 37.500 0.00 0.00 0.00 1.90
23 24 4.479158 TGGCAAGAAAACTAACTCCCATT 58.521 39.130 0.00 0.00 0.00 3.16
24 25 4.112634 TGGCAAGAAAACTAACTCCCAT 57.887 40.909 0.00 0.00 0.00 4.00
25 26 3.586470 TGGCAAGAAAACTAACTCCCA 57.414 42.857 0.00 0.00 0.00 4.37
26 27 4.929819 TTTGGCAAGAAAACTAACTCCC 57.070 40.909 0.00 0.00 0.00 4.30
27 28 8.880878 TTTTATTTGGCAAGAAAACTAACTCC 57.119 30.769 14.52 0.00 29.95 3.85
36 37 9.389755 GGGCTTTATATTTTATTTGGCAAGAAA 57.610 29.630 0.00 2.68 0.00 2.52
37 38 7.990314 GGGGCTTTATATTTTATTTGGCAAGAA 59.010 33.333 0.00 0.00 0.00 2.52
38 39 7.419634 GGGGGCTTTATATTTTATTTGGCAAGA 60.420 37.037 0.00 0.00 0.00 3.02
39 40 6.710295 GGGGGCTTTATATTTTATTTGGCAAG 59.290 38.462 0.00 0.00 0.00 4.01
40 41 6.388394 AGGGGGCTTTATATTTTATTTGGCAA 59.612 34.615 0.00 0.00 0.00 4.52
41 42 5.908247 AGGGGGCTTTATATTTTATTTGGCA 59.092 36.000 0.00 0.00 0.00 4.92
42 43 6.433847 AGGGGGCTTTATATTTTATTTGGC 57.566 37.500 0.00 0.00 0.00 4.52
53 54 9.161572 GGGAATTATTTAAAAGGGGGCTTTATA 57.838 33.333 0.00 0.00 0.00 0.98
54 55 7.854560 AGGGAATTATTTAAAAGGGGGCTTTAT 59.145 33.333 0.00 0.00 0.00 1.40
55 56 7.200483 AGGGAATTATTTAAAAGGGGGCTTTA 58.800 34.615 0.00 0.00 0.00 1.85
56 57 6.035973 AGGGAATTATTTAAAAGGGGGCTTT 58.964 36.000 0.00 0.00 0.00 3.51
57 58 5.609782 AGGGAATTATTTAAAAGGGGGCTT 58.390 37.500 0.00 0.00 0.00 4.35
58 59 5.235003 AGGGAATTATTTAAAAGGGGGCT 57.765 39.130 0.00 0.00 0.00 5.19
59 60 5.968676 AAGGGAATTATTTAAAAGGGGGC 57.031 39.130 0.00 0.00 0.00 5.80
60 61 8.167392 ACAAAAAGGGAATTATTTAAAAGGGGG 58.833 33.333 0.00 0.00 0.00 5.40
61 62 9.008965 CACAAAAAGGGAATTATTTAAAAGGGG 57.991 33.333 0.00 0.00 0.00 4.79
62 63 9.785982 TCACAAAAAGGGAATTATTTAAAAGGG 57.214 29.630 0.00 0.00 0.00 3.95
70 71 9.859152 TCCAAAAATCACAAAAAGGGAATTATT 57.141 25.926 0.00 0.00 29.94 1.40
72 73 9.859152 AATCCAAAAATCACAAAAAGGGAATTA 57.141 25.926 0.00 0.00 29.94 1.40
73 74 8.631797 CAATCCAAAAATCACAAAAAGGGAATT 58.368 29.630 0.00 0.00 29.94 2.17
74 75 7.997803 TCAATCCAAAAATCACAAAAAGGGAAT 59.002 29.630 0.00 0.00 29.94 3.01
75 76 7.341805 TCAATCCAAAAATCACAAAAAGGGAA 58.658 30.769 0.00 0.00 29.94 3.97
76 77 6.893583 TCAATCCAAAAATCACAAAAAGGGA 58.106 32.000 0.00 0.00 0.00 4.20
77 78 7.748691 ATCAATCCAAAAATCACAAAAAGGG 57.251 32.000 0.00 0.00 0.00 3.95
78 79 8.838365 TGAATCAATCCAAAAATCACAAAAAGG 58.162 29.630 0.00 0.00 0.00 3.11
91 92 9.570468 TGGATTTGATTTTTGAATCAATCCAAA 57.430 25.926 24.28 10.05 45.40 3.28
92 93 9.001542 GTGGATTTGATTTTTGAATCAATCCAA 57.998 29.630 25.95 17.23 45.28 3.53
93 94 7.331440 CGTGGATTTGATTTTTGAATCAATCCA 59.669 33.333 23.58 23.58 45.40 3.41
94 95 7.331687 ACGTGGATTTGATTTTTGAATCAATCC 59.668 33.333 21.07 21.07 45.40 3.01
95 96 8.243289 ACGTGGATTTGATTTTTGAATCAATC 57.757 30.769 13.46 12.31 45.40 2.67
96 97 8.606040 AACGTGGATTTGATTTTTGAATCAAT 57.394 26.923 13.46 6.14 45.40 2.57
97 98 9.703892 ATAACGTGGATTTGATTTTTGAATCAA 57.296 25.926 9.75 9.75 44.70 2.57
98 99 9.352784 GATAACGTGGATTTGATTTTTGAATCA 57.647 29.630 0.00 0.00 37.40 2.57
99 100 9.352784 TGATAACGTGGATTTGATTTTTGAATC 57.647 29.630 0.00 0.00 0.00 2.52
100 101 9.357652 CTGATAACGTGGATTTGATTTTTGAAT 57.642 29.630 0.00 0.00 0.00 2.57
101 102 8.572185 TCTGATAACGTGGATTTGATTTTTGAA 58.428 29.630 0.00 0.00 0.00 2.69
102 103 8.105097 TCTGATAACGTGGATTTGATTTTTGA 57.895 30.769 0.00 0.00 0.00 2.69
103 104 8.741101 TTCTGATAACGTGGATTTGATTTTTG 57.259 30.769 0.00 0.00 0.00 2.44
104 105 7.542130 GCTTCTGATAACGTGGATTTGATTTTT 59.458 33.333 0.00 0.00 0.00 1.94
105 106 7.029563 GCTTCTGATAACGTGGATTTGATTTT 58.970 34.615 0.00 0.00 0.00 1.82
106 107 6.375455 AGCTTCTGATAACGTGGATTTGATTT 59.625 34.615 0.00 0.00 0.00 2.17
107 108 5.882557 AGCTTCTGATAACGTGGATTTGATT 59.117 36.000 0.00 0.00 0.00 2.57
108 109 5.431765 AGCTTCTGATAACGTGGATTTGAT 58.568 37.500 0.00 0.00 0.00 2.57
109 110 4.832248 AGCTTCTGATAACGTGGATTTGA 58.168 39.130 0.00 0.00 0.00 2.69
110 111 5.551760 AAGCTTCTGATAACGTGGATTTG 57.448 39.130 0.00 0.00 0.00 2.32
111 112 7.681939 TTTAAGCTTCTGATAACGTGGATTT 57.318 32.000 0.00 0.00 0.00 2.17
112 113 7.865706 ATTTAAGCTTCTGATAACGTGGATT 57.134 32.000 0.00 0.00 0.00 3.01
113 114 9.561069 AATATTTAAGCTTCTGATAACGTGGAT 57.439 29.630 0.00 0.00 0.00 3.41
114 115 8.958119 AATATTTAAGCTTCTGATAACGTGGA 57.042 30.769 0.00 0.00 0.00 4.02
178 179 9.326413 CGAGAATAGGGTGACAAATTAACTAAT 57.674 33.333 0.00 0.00 0.00 1.73
179 180 7.767198 CCGAGAATAGGGTGACAAATTAACTAA 59.233 37.037 0.00 0.00 0.00 2.24
180 181 7.124599 TCCGAGAATAGGGTGACAAATTAACTA 59.875 37.037 0.00 0.00 0.00 2.24
181 182 6.070424 TCCGAGAATAGGGTGACAAATTAACT 60.070 38.462 0.00 0.00 0.00 2.24
182 183 6.036844 GTCCGAGAATAGGGTGACAAATTAAC 59.963 42.308 0.00 0.00 0.00 2.01
183 184 6.070424 AGTCCGAGAATAGGGTGACAAATTAA 60.070 38.462 0.00 0.00 0.00 1.40
184 185 5.424252 AGTCCGAGAATAGGGTGACAAATTA 59.576 40.000 0.00 0.00 0.00 1.40
185 186 4.225267 AGTCCGAGAATAGGGTGACAAATT 59.775 41.667 0.00 0.00 0.00 1.82
186 187 3.775316 AGTCCGAGAATAGGGTGACAAAT 59.225 43.478 0.00 0.00 0.00 2.32
187 188 3.170717 AGTCCGAGAATAGGGTGACAAA 58.829 45.455 0.00 0.00 0.00 2.83
188 189 2.816411 AGTCCGAGAATAGGGTGACAA 58.184 47.619 0.00 0.00 0.00 3.18
189 190 2.526888 AGTCCGAGAATAGGGTGACA 57.473 50.000 0.00 0.00 0.00 3.58
190 191 2.758979 TGAAGTCCGAGAATAGGGTGAC 59.241 50.000 0.00 0.00 0.00 3.67
191 192 3.095912 TGAAGTCCGAGAATAGGGTGA 57.904 47.619 0.00 0.00 0.00 4.02
192 193 3.887621 TTGAAGTCCGAGAATAGGGTG 57.112 47.619 0.00 0.00 0.00 4.61
193 194 6.749036 ATAATTGAAGTCCGAGAATAGGGT 57.251 37.500 0.00 0.00 0.00 4.34
194 195 6.651225 GGAATAATTGAAGTCCGAGAATAGGG 59.349 42.308 0.00 0.00 0.00 3.53
195 196 6.651225 GGGAATAATTGAAGTCCGAGAATAGG 59.349 42.308 0.00 0.00 0.00 2.57
196 197 7.445945 AGGGAATAATTGAAGTCCGAGAATAG 58.554 38.462 0.00 0.00 0.00 1.73
197 198 7.374975 AGGGAATAATTGAAGTCCGAGAATA 57.625 36.000 0.00 0.00 0.00 1.75
198 199 6.253946 AGGGAATAATTGAAGTCCGAGAAT 57.746 37.500 0.00 0.00 0.00 2.40
199 200 5.693769 AGGGAATAATTGAAGTCCGAGAA 57.306 39.130 0.00 0.00 0.00 2.87
200 201 6.801718 TTAGGGAATAATTGAAGTCCGAGA 57.198 37.500 0.00 0.00 0.00 4.04
201 202 8.451908 AAATTAGGGAATAATTGAAGTCCGAG 57.548 34.615 0.00 0.00 42.14 4.63
202 203 8.817092 AAAATTAGGGAATAATTGAAGTCCGA 57.183 30.769 0.00 0.00 42.14 4.55
223 224 9.780186 TGGGAAATTAAAATGAACCGTAAAAAT 57.220 25.926 0.00 0.00 0.00 1.82
224 225 9.609346 TTGGGAAATTAAAATGAACCGTAAAAA 57.391 25.926 0.00 0.00 0.00 1.94
225 226 9.780186 ATTGGGAAATTAAAATGAACCGTAAAA 57.220 25.926 0.00 0.00 0.00 1.52
226 227 9.780186 AATTGGGAAATTAAAATGAACCGTAAA 57.220 25.926 0.00 0.00 0.00 2.01
227 228 9.780186 AAATTGGGAAATTAAAATGAACCGTAA 57.220 25.926 0.00 0.00 0.00 3.18
228 229 9.780186 AAAATTGGGAAATTAAAATGAACCGTA 57.220 25.926 0.00 0.00 0.00 4.02
229 230 8.563732 CAAAATTGGGAAATTAAAATGAACCGT 58.436 29.630 0.00 0.00 0.00 4.83
230 231 8.778358 TCAAAATTGGGAAATTAAAATGAACCG 58.222 29.630 0.00 0.00 0.00 4.44
237 238 9.294614 CCCTGATTCAAAATTGGGAAATTAAAA 57.705 29.630 2.43 0.00 36.90 1.52
238 239 8.443979 ACCCTGATTCAAAATTGGGAAATTAAA 58.556 29.630 13.39 0.00 38.08 1.52
239 240 7.983363 ACCCTGATTCAAAATTGGGAAATTAA 58.017 30.769 13.39 0.00 38.08 1.40
240 241 7.566658 ACCCTGATTCAAAATTGGGAAATTA 57.433 32.000 13.39 0.00 38.08 1.40
241 242 6.452757 ACCCTGATTCAAAATTGGGAAATT 57.547 33.333 13.39 0.00 38.08 1.82
242 243 6.044171 TGAACCCTGATTCAAAATTGGGAAAT 59.956 34.615 13.39 1.65 35.65 2.17
243 244 5.367937 TGAACCCTGATTCAAAATTGGGAAA 59.632 36.000 13.39 0.00 35.65 3.13
244 245 4.904251 TGAACCCTGATTCAAAATTGGGAA 59.096 37.500 13.39 0.00 35.65 3.97
245 246 4.487804 TGAACCCTGATTCAAAATTGGGA 58.512 39.130 13.39 0.00 35.65 4.37
246 247 4.888326 TGAACCCTGATTCAAAATTGGG 57.112 40.909 6.42 6.42 35.65 4.12
254 255 6.356556 ACGATCAATATTGAACCCTGATTCA 58.643 36.000 21.50 0.00 41.13 2.57
255 256 6.346919 CGACGATCAATATTGAACCCTGATTC 60.347 42.308 21.50 10.98 41.13 2.52
256 257 5.466728 CGACGATCAATATTGAACCCTGATT 59.533 40.000 21.50 3.00 41.13 2.57
257 258 4.991056 CGACGATCAATATTGAACCCTGAT 59.009 41.667 21.50 3.75 41.13 2.90
258 259 4.098807 TCGACGATCAATATTGAACCCTGA 59.901 41.667 21.50 13.80 41.13 3.86
259 260 4.368315 TCGACGATCAATATTGAACCCTG 58.632 43.478 21.50 11.92 41.13 4.45
260 261 4.501571 CCTCGACGATCAATATTGAACCCT 60.502 45.833 21.50 5.62 41.13 4.34
261 262 3.741344 CCTCGACGATCAATATTGAACCC 59.259 47.826 21.50 12.56 41.13 4.11
262 263 4.369182 ACCTCGACGATCAATATTGAACC 58.631 43.478 21.50 14.77 41.13 3.62
263 264 5.728255 CAACCTCGACGATCAATATTGAAC 58.272 41.667 21.50 17.53 41.13 3.18
264 265 4.270084 GCAACCTCGACGATCAATATTGAA 59.730 41.667 21.50 6.19 41.13 2.69
265 266 3.802139 GCAACCTCGACGATCAATATTGA 59.198 43.478 20.07 20.07 42.14 2.57
266 267 3.059597 GGCAACCTCGACGATCAATATTG 60.060 47.826 9.29 9.29 0.00 1.90
267 268 3.131396 GGCAACCTCGACGATCAATATT 58.869 45.455 0.00 0.00 0.00 1.28
268 269 2.102420 TGGCAACCTCGACGATCAATAT 59.898 45.455 0.00 0.00 0.00 1.28
269 270 1.478916 TGGCAACCTCGACGATCAATA 59.521 47.619 0.00 0.00 0.00 1.90
270 271 0.249120 TGGCAACCTCGACGATCAAT 59.751 50.000 0.00 0.00 0.00 2.57
271 272 0.249120 ATGGCAACCTCGACGATCAA 59.751 50.000 0.00 0.00 0.00 2.57
272 273 0.179111 GATGGCAACCTCGACGATCA 60.179 55.000 0.00 0.00 0.00 2.92
273 274 0.179111 TGATGGCAACCTCGACGATC 60.179 55.000 0.00 0.00 33.32 3.69
277 278 1.796796 GCTTGATGGCAACCTCGAC 59.203 57.895 0.00 0.00 33.32 4.20
296 297 1.235281 GCCCCGTTGAGGAGTTTGAC 61.235 60.000 0.00 0.00 45.00 3.18
315 316 0.948623 TGGTCATTGGTGAAGTCGCG 60.949 55.000 0.00 0.00 35.80 5.87
316 317 1.398390 GATGGTCATTGGTGAAGTCGC 59.602 52.381 0.00 0.00 35.80 5.19
317 318 2.416547 GTGATGGTCATTGGTGAAGTCG 59.583 50.000 0.00 0.00 35.80 4.18
332 340 0.608130 TGAGGTCTCGTTGGTGATGG 59.392 55.000 0.00 0.00 0.00 3.51
335 343 1.272490 GACATGAGGTCTCGTTGGTGA 59.728 52.381 0.00 0.00 43.46 4.02
351 359 4.155462 GCATGAGTCTTTGATGTGTGACAT 59.845 41.667 0.00 0.00 42.43 3.06
353 361 3.120060 GGCATGAGTCTTTGATGTGTGAC 60.120 47.826 0.00 0.00 0.00 3.67
354 362 3.076621 GGCATGAGTCTTTGATGTGTGA 58.923 45.455 0.00 0.00 0.00 3.58
355 363 2.815503 TGGCATGAGTCTTTGATGTGTG 59.184 45.455 0.00 0.00 0.00 3.82
357 365 2.159421 GCTGGCATGAGTCTTTGATGTG 60.159 50.000 0.00 0.00 0.00 3.21
358 366 2.089980 GCTGGCATGAGTCTTTGATGT 58.910 47.619 0.00 0.00 0.00 3.06
359 367 1.404391 GGCTGGCATGAGTCTTTGATG 59.596 52.381 0.00 0.00 0.00 3.07
360 368 1.284198 AGGCTGGCATGAGTCTTTGAT 59.716 47.619 3.38 0.00 0.00 2.57
361 369 0.694771 AGGCTGGCATGAGTCTTTGA 59.305 50.000 3.38 0.00 0.00 2.69
364 372 4.989875 ATTATAGGCTGGCATGAGTCTT 57.010 40.909 3.38 0.00 0.00 3.01
377 387 5.165961 TGCAAGGGTCTGATATTATAGGC 57.834 43.478 0.00 0.00 0.00 3.93
383 393 4.265073 GTCAGTTGCAAGGGTCTGATATT 58.735 43.478 17.44 0.00 38.80 1.28
385 395 2.027192 GGTCAGTTGCAAGGGTCTGATA 60.027 50.000 17.44 0.00 38.80 2.15
386 396 1.271597 GGTCAGTTGCAAGGGTCTGAT 60.272 52.381 17.44 0.00 38.80 2.90
388 398 0.109342 AGGTCAGTTGCAAGGGTCTG 59.891 55.000 0.00 3.65 0.00 3.51
402 412 0.766288 TGACACATGGTGGGAGGTCA 60.766 55.000 0.00 0.00 37.94 4.02
407 425 3.955145 GTGATGACACATGGTGGGA 57.045 52.632 0.00 0.00 45.32 4.37
455 473 0.249322 CACCGTGTCTCCGTCAAGTT 60.249 55.000 0.00 0.00 0.00 2.66
459 477 1.658114 CTTCACCGTGTCTCCGTCA 59.342 57.895 0.00 0.00 0.00 4.35
462 480 2.022129 GTGCTTCACCGTGTCTCCG 61.022 63.158 0.00 0.00 0.00 4.63
465 483 0.532862 CCTTGTGCTTCACCGTGTCT 60.533 55.000 0.00 0.00 32.73 3.41
473 491 3.185203 AGGGGCCCTTGTGCTTCA 61.185 61.111 22.67 0.00 0.00 3.02
491 509 2.820197 TCGGTCTCATCCCTCATATTCG 59.180 50.000 0.00 0.00 0.00 3.34
497 515 1.409802 GGTAGTCGGTCTCATCCCTCA 60.410 57.143 0.00 0.00 0.00 3.86
507 525 1.672145 GCTGGTTTCTGGTAGTCGGTC 60.672 57.143 0.00 0.00 0.00 4.79
531 549 6.296026 TGTTACATCTATTATGACTTGGGCC 58.704 40.000 0.00 0.00 0.00 5.80
554 572 8.964420 ACAACGAACACCAGAAATAATAAATG 57.036 30.769 0.00 0.00 0.00 2.32
665 687 5.760253 ACATGAGTATTCCCTCGCAAAATAG 59.240 40.000 0.00 0.00 34.04 1.73
698 720 5.756347 CCTACGGTTTCCATCAATATCGAAA 59.244 40.000 0.00 0.00 0.00 3.46
714 737 0.603569 CACAGCAGAGTCCTACGGTT 59.396 55.000 0.00 0.00 0.00 4.44
716 739 1.153745 GCACAGCAGAGTCCTACGG 60.154 63.158 0.00 0.00 0.00 4.02
741 764 9.890352 CCCAAACAAACAAAAATGGTAAATATG 57.110 29.630 0.00 0.00 0.00 1.78
742 765 9.634021 ACCCAAACAAACAAAAATGGTAAATAT 57.366 25.926 0.00 0.00 0.00 1.28
743 766 8.893727 CACCCAAACAAACAAAAATGGTAAATA 58.106 29.630 0.00 0.00 0.00 1.40
744 767 7.394641 ACACCCAAACAAACAAAAATGGTAAAT 59.605 29.630 0.00 0.00 0.00 1.40
745 768 6.715264 ACACCCAAACAAACAAAAATGGTAAA 59.285 30.769 0.00 0.00 0.00 2.01
746 769 6.238648 ACACCCAAACAAACAAAAATGGTAA 58.761 32.000 0.00 0.00 0.00 2.85
750 773 6.442112 ACAAACACCCAAACAAACAAAAATG 58.558 32.000 0.00 0.00 0.00 2.32
751 774 6.641169 ACAAACACCCAAACAAACAAAAAT 57.359 29.167 0.00 0.00 0.00 1.82
815 838 1.203001 AGGAATCAGGGCACGGAAAAA 60.203 47.619 0.00 0.00 0.00 1.94
816 839 0.404040 AGGAATCAGGGCACGGAAAA 59.596 50.000 0.00 0.00 0.00 2.29
817 840 0.322456 CAGGAATCAGGGCACGGAAA 60.322 55.000 0.00 0.00 0.00 3.13
818 841 1.299648 CAGGAATCAGGGCACGGAA 59.700 57.895 0.00 0.00 0.00 4.30
819 842 2.669133 CCAGGAATCAGGGCACGGA 61.669 63.158 0.00 0.00 0.00 4.69
820 843 2.124570 CCAGGAATCAGGGCACGG 60.125 66.667 0.00 0.00 0.00 4.94
821 844 1.002134 AACCAGGAATCAGGGCACG 60.002 57.895 0.00 0.00 0.00 5.34
822 845 1.598701 GCAACCAGGAATCAGGGCAC 61.599 60.000 0.00 0.00 0.00 5.01
823 846 1.304381 GCAACCAGGAATCAGGGCA 60.304 57.895 0.00 0.00 0.00 5.36
824 847 0.685458 ATGCAACCAGGAATCAGGGC 60.685 55.000 0.00 0.00 0.00 5.19
825 848 1.856629 AATGCAACCAGGAATCAGGG 58.143 50.000 0.00 0.00 0.00 4.45
826 849 2.827322 TCAAATGCAACCAGGAATCAGG 59.173 45.455 0.00 0.00 0.00 3.86
827 850 3.760151 TCTCAAATGCAACCAGGAATCAG 59.240 43.478 0.00 0.00 0.00 2.90
828 851 3.765381 TCTCAAATGCAACCAGGAATCA 58.235 40.909 0.00 0.00 0.00 2.57
829 852 4.789012 TTCTCAAATGCAACCAGGAATC 57.211 40.909 0.00 0.00 0.00 2.52
830 853 4.834496 TCTTTCTCAAATGCAACCAGGAAT 59.166 37.500 0.00 0.00 0.00 3.01
831 854 4.037923 GTCTTTCTCAAATGCAACCAGGAA 59.962 41.667 0.00 0.00 0.00 3.36
832 855 3.569701 GTCTTTCTCAAATGCAACCAGGA 59.430 43.478 0.00 0.00 0.00 3.86
833 856 3.571401 AGTCTTTCTCAAATGCAACCAGG 59.429 43.478 0.00 0.00 0.00 4.45
834 857 4.791974 GAGTCTTTCTCAAATGCAACCAG 58.208 43.478 0.00 0.00 42.34 4.00
835 858 4.836125 GAGTCTTTCTCAAATGCAACCA 57.164 40.909 0.00 0.00 42.34 3.67
846 869 4.391523 GCATGTCTTCCTTGAGTCTTTCTC 59.608 45.833 0.00 0.00 43.03 2.87
847 870 4.041444 AGCATGTCTTCCTTGAGTCTTTCT 59.959 41.667 0.00 0.00 0.00 2.52
848 871 4.322567 AGCATGTCTTCCTTGAGTCTTTC 58.677 43.478 0.00 0.00 0.00 2.62
849 872 4.041444 AGAGCATGTCTTCCTTGAGTCTTT 59.959 41.667 0.00 0.00 27.07 2.52
850 873 3.582208 AGAGCATGTCTTCCTTGAGTCTT 59.418 43.478 0.00 0.00 27.07 3.01
851 874 3.172339 AGAGCATGTCTTCCTTGAGTCT 58.828 45.455 0.00 0.00 27.07 3.24
852 875 3.608316 AGAGCATGTCTTCCTTGAGTC 57.392 47.619 0.00 0.00 27.07 3.36
853 876 3.072184 ACAAGAGCATGTCTTCCTTGAGT 59.928 43.478 17.46 7.52 44.28 3.41
854 877 3.672808 ACAAGAGCATGTCTTCCTTGAG 58.327 45.455 17.46 7.10 44.28 3.02
855 878 3.777106 ACAAGAGCATGTCTTCCTTGA 57.223 42.857 17.46 0.00 44.28 3.02
856 879 3.817084 TCAACAAGAGCATGTCTTCCTTG 59.183 43.478 12.69 12.69 44.28 3.61
857 880 4.090761 TCAACAAGAGCATGTCTTCCTT 57.909 40.909 7.35 0.00 44.28 3.36
858 881 3.777106 TCAACAAGAGCATGTCTTCCT 57.223 42.857 7.35 0.00 44.28 3.36
859 882 3.063180 CGATCAACAAGAGCATGTCTTCC 59.937 47.826 7.35 0.00 44.28 3.46
860 883 3.928992 TCGATCAACAAGAGCATGTCTTC 59.071 43.478 7.35 0.00 44.28 2.87
862 885 3.194329 TCTCGATCAACAAGAGCATGTCT 59.806 43.478 0.00 0.00 36.94 3.41
863 886 3.515630 TCTCGATCAACAAGAGCATGTC 58.484 45.455 0.00 0.00 31.81 3.06
864 887 3.056250 ACTCTCGATCAACAAGAGCATGT 60.056 43.478 9.94 0.00 40.15 3.21
865 888 3.519579 ACTCTCGATCAACAAGAGCATG 58.480 45.455 9.94 0.00 40.15 4.06
866 889 3.733380 CGACTCTCGATCAACAAGAGCAT 60.733 47.826 9.94 0.00 43.74 3.79
867 890 2.414691 CGACTCTCGATCAACAAGAGCA 60.415 50.000 9.94 0.00 43.74 4.26
868 891 2.181205 CGACTCTCGATCAACAAGAGC 58.819 52.381 9.94 4.64 43.74 4.09
869 892 2.420372 TCCGACTCTCGATCAACAAGAG 59.580 50.000 8.91 8.91 43.74 2.85
870 893 2.420372 CTCCGACTCTCGATCAACAAGA 59.580 50.000 0.00 0.00 43.74 3.02
871 894 2.162608 ACTCCGACTCTCGATCAACAAG 59.837 50.000 0.00 0.00 43.74 3.16
872 895 2.160205 ACTCCGACTCTCGATCAACAA 58.840 47.619 0.00 0.00 43.74 2.83
873 896 1.738350 GACTCCGACTCTCGATCAACA 59.262 52.381 0.00 0.00 43.74 3.33
874 897 1.267632 CGACTCCGACTCTCGATCAAC 60.268 57.143 0.00 0.00 43.74 3.18
875 898 1.007580 CGACTCCGACTCTCGATCAA 58.992 55.000 0.00 0.00 43.74 2.57
876 899 0.108281 ACGACTCCGACTCTCGATCA 60.108 55.000 0.00 0.00 43.74 2.92
877 900 0.578211 GACGACTCCGACTCTCGATC 59.422 60.000 0.00 0.00 43.74 3.69
878 901 1.146957 CGACGACTCCGACTCTCGAT 61.147 60.000 0.00 0.00 43.74 3.59
879 902 1.804730 CGACGACTCCGACTCTCGA 60.805 63.158 0.00 0.00 43.74 4.04
880 903 2.093473 ACGACGACTCCGACTCTCG 61.093 63.158 0.00 0.00 40.07 4.04
881 904 1.420702 CACGACGACTCCGACTCTC 59.579 63.158 0.00 0.00 39.50 3.20
882 905 2.678956 GCACGACGACTCCGACTCT 61.679 63.158 0.00 0.00 39.50 3.24
898 921 1.552337 GGACAGGAAGTGATCTGAGCA 59.448 52.381 0.00 0.00 35.20 4.26
908 931 2.232452 CAGATGAAGTCGGACAGGAAGT 59.768 50.000 11.27 0.00 0.00 3.01
914 937 1.066858 GGAAGCAGATGAAGTCGGACA 60.067 52.381 11.27 0.00 0.00 4.02
925 948 2.223688 CGACTCGAGATTGGAAGCAGAT 60.224 50.000 21.68 0.00 0.00 2.90
928 951 0.173481 CCGACTCGAGATTGGAAGCA 59.827 55.000 21.68 0.00 0.00 3.91
930 953 2.603412 CGATCCGACTCGAGATTGGAAG 60.603 54.545 21.68 15.53 41.12 3.46
952 975 4.478195 GCAGATGCAGTCGTACGT 57.522 55.556 16.05 0.00 41.59 3.57
962 985 5.458015 TGTGTACGTATATAGTGCAGATGC 58.542 41.667 0.00 0.00 42.50 3.91
964 987 8.235226 GTGTATGTGTACGTATATAGTGCAGAT 58.765 37.037 0.00 13.16 40.21 2.90
966 989 7.357303 TGTGTATGTGTACGTATATAGTGCAG 58.643 38.462 0.00 0.00 35.04 4.41
967 990 7.261829 TGTGTATGTGTACGTATATAGTGCA 57.738 36.000 0.00 0.00 33.36 4.57
968 991 6.800408 CCTGTGTATGTGTACGTATATAGTGC 59.200 42.308 0.00 0.00 33.36 4.40
969 992 7.868775 ACCTGTGTATGTGTACGTATATAGTG 58.131 38.462 0.00 0.00 33.36 2.74
970 993 7.935755 AGACCTGTGTATGTGTACGTATATAGT 59.064 37.037 0.00 0.00 33.36 2.12
971 994 8.320396 AGACCTGTGTATGTGTACGTATATAG 57.680 38.462 0.00 0.00 33.36 1.31
973 996 7.423199 CAAGACCTGTGTATGTGTACGTATAT 58.577 38.462 0.00 0.00 33.36 0.86
974 997 6.183360 CCAAGACCTGTGTATGTGTACGTATA 60.183 42.308 0.00 0.00 33.36 1.47
975 998 5.393787 CCAAGACCTGTGTATGTGTACGTAT 60.394 44.000 0.00 0.00 33.36 3.06
976 999 4.082625 CCAAGACCTGTGTATGTGTACGTA 60.083 45.833 0.00 0.00 33.36 3.57
977 1000 3.305813 CCAAGACCTGTGTATGTGTACGT 60.306 47.826 0.00 0.00 33.36 3.57
978 1001 3.250744 CCAAGACCTGTGTATGTGTACG 58.749 50.000 0.00 0.00 33.36 3.67
979 1002 3.000727 GCCAAGACCTGTGTATGTGTAC 58.999 50.000 0.00 0.00 0.00 2.90
980 1003 2.353307 CGCCAAGACCTGTGTATGTGTA 60.353 50.000 0.00 0.00 0.00 2.90
981 1004 1.608025 CGCCAAGACCTGTGTATGTGT 60.608 52.381 0.00 0.00 0.00 3.72
982 1005 1.078709 CGCCAAGACCTGTGTATGTG 58.921 55.000 0.00 0.00 0.00 3.21
983 1006 0.673644 GCGCCAAGACCTGTGTATGT 60.674 55.000 0.00 0.00 0.00 2.29
1007 1046 1.005037 TGCGCAACGATGAACCTCT 60.005 52.632 8.16 0.00 0.00 3.69
1040 1079 3.569701 TGATTGAGAAACACTTTGGGAGC 59.430 43.478 0.00 0.00 0.00 4.70
1045 1084 6.429624 TCATCGTTGATTGAGAAACACTTTG 58.570 36.000 0.00 0.00 0.00 2.77
1046 1085 6.618287 TCATCGTTGATTGAGAAACACTTT 57.382 33.333 0.00 0.00 0.00 2.66
1060 1099 1.485895 TGCCTGATGGATCATCGTTGA 59.514 47.619 0.00 0.00 43.14 3.18
1067 1106 2.507452 CCGCTGCCTGATGGATCA 59.493 61.111 0.00 0.00 34.57 2.92
1194 1233 4.096003 CACCTGCCCCGGACGAAT 62.096 66.667 0.73 0.00 0.00 3.34
1518 1578 0.458025 GGTAGAACCGAGCTTGGTCG 60.458 60.000 26.35 14.26 42.89 4.79
1558 1618 4.570663 CCGGATGGCGACGAGGAC 62.571 72.222 0.00 0.00 0.00 3.85
1605 1665 1.299648 CTGATCAACGGCCCCTTCA 59.700 57.895 0.00 0.00 0.00 3.02
1753 1813 2.180769 CTTCATGTCGTCCGCCGA 59.819 61.111 0.00 0.00 45.00 5.54
1758 1818 1.810030 GACGGCCTTCATGTCGTCC 60.810 63.158 3.96 3.24 44.02 4.79
1772 1832 4.760047 CCAAGGTGGCGAGGACGG 62.760 72.222 0.00 0.00 40.15 4.79
1814 1874 0.802607 GAGGATGGCTTCGACGTCAC 60.803 60.000 17.16 1.22 0.00 3.67
1824 1884 1.327690 TTAGAACGGCGAGGATGGCT 61.328 55.000 16.62 2.09 40.84 4.75
1835 1895 1.529826 GCAGCTGCGATTTTAGAACGG 60.530 52.381 25.23 0.00 0.00 4.44
2044 2115 4.436998 CGGAGTGTGCTCGGGGAC 62.437 72.222 0.00 0.00 42.53 4.46
2495 2568 4.680237 TGGCACGACGGAAGGCTG 62.680 66.667 0.00 0.00 36.51 4.85
2562 2635 2.285668 CCTGAGGAGGCCAGGGAA 60.286 66.667 5.01 0.00 45.66 3.97
2643 2716 2.327200 TGCTGGCATCAGAGATCAAG 57.673 50.000 0.00 0.00 43.49 3.02
2700 2773 4.129148 GGGAGTGGGGTGATGGGC 62.129 72.222 0.00 0.00 0.00 5.36
2729 2802 3.133003 TGCTGGAAGACTACTATCCAAGC 59.867 47.826 0.00 0.00 42.41 4.01
2737 2810 2.183679 CCTCCTTGCTGGAAGACTACT 58.816 52.381 10.73 0.00 45.63 2.57
2738 2811 1.406205 GCCTCCTTGCTGGAAGACTAC 60.406 57.143 10.73 0.00 45.63 2.73
2739 2812 0.905357 GCCTCCTTGCTGGAAGACTA 59.095 55.000 10.73 0.00 45.63 2.59
2740 2813 1.130054 TGCCTCCTTGCTGGAAGACT 61.130 55.000 10.73 0.00 45.63 3.24
2756 2829 0.750911 CCTCTTCTCCAGCCATTGCC 60.751 60.000 0.00 0.00 38.69 4.52
2764 2837 1.274712 AACCTCTGCCTCTTCTCCAG 58.725 55.000 0.00 0.00 0.00 3.86
2802 2875 4.143333 TAGCCGCGGAGGAGTTGC 62.143 66.667 33.48 10.96 45.00 4.17
2831 2904 0.983467 AAATGTTGGTTCCCATGGGC 59.017 50.000 27.41 13.15 31.53 5.36
2880 2953 0.825840 AGGACAGATAGGCGCTCTCC 60.826 60.000 7.64 1.17 0.00 3.71
2895 2968 0.618458 TGTGGTAGCAATGGGAGGAC 59.382 55.000 0.00 0.00 0.00 3.85
2931 3004 3.699038 GACTGATTCCTAGACACTCAGCT 59.301 47.826 9.89 0.00 37.45 4.24
2934 3007 3.951663 TCGACTGATTCCTAGACACTCA 58.048 45.455 0.00 0.00 0.00 3.41
2935 3008 5.066634 TCAATCGACTGATTCCTAGACACTC 59.933 44.000 0.00 0.00 42.94 3.51
2936 3009 4.950475 TCAATCGACTGATTCCTAGACACT 59.050 41.667 0.00 0.00 42.94 3.55
2937 3010 5.250235 TCAATCGACTGATTCCTAGACAC 57.750 43.478 0.00 0.00 42.94 3.67
2938 3011 4.202060 GCTCAATCGACTGATTCCTAGACA 60.202 45.833 0.00 0.00 42.94 3.41
2939 3012 4.295051 GCTCAATCGACTGATTCCTAGAC 58.705 47.826 0.00 0.00 42.94 2.59
2940 3013 3.319405 GGCTCAATCGACTGATTCCTAGA 59.681 47.826 0.00 0.00 42.94 2.43
2941 3014 3.553922 GGGCTCAATCGACTGATTCCTAG 60.554 52.174 12.85 0.00 42.94 3.02
2942 3015 2.365617 GGGCTCAATCGACTGATTCCTA 59.634 50.000 12.85 0.00 42.94 2.94
2943 3016 1.139853 GGGCTCAATCGACTGATTCCT 59.860 52.381 12.85 0.00 42.94 3.36
2944 3017 1.134401 TGGGCTCAATCGACTGATTCC 60.134 52.381 0.00 2.90 42.94 3.01
2945 3018 2.315925 TGGGCTCAATCGACTGATTC 57.684 50.000 0.00 0.00 42.94 2.52
2946 3019 2.787473 TTGGGCTCAATCGACTGATT 57.213 45.000 0.00 0.00 45.70 2.57
2947 3020 2.787473 TTTGGGCTCAATCGACTGAT 57.213 45.000 0.00 0.00 35.98 2.90
2948 3021 2.027285 TCATTTGGGCTCAATCGACTGA 60.027 45.455 0.00 0.00 32.28 3.41
2949 3022 2.353889 CTCATTTGGGCTCAATCGACTG 59.646 50.000 0.00 0.00 32.28 3.51
2950 3023 2.026822 ACTCATTTGGGCTCAATCGACT 60.027 45.455 0.00 0.00 32.28 4.18
2951 3024 2.352960 GACTCATTTGGGCTCAATCGAC 59.647 50.000 0.00 0.00 32.28 4.20
2952 3025 2.237143 AGACTCATTTGGGCTCAATCGA 59.763 45.455 0.00 0.00 32.28 3.59
2953 3026 2.611292 GAGACTCATTTGGGCTCAATCG 59.389 50.000 0.00 0.00 32.28 3.34
2954 3027 3.614092 TGAGACTCATTTGGGCTCAATC 58.386 45.455 0.00 0.00 33.11 2.67
2955 3028 3.009916 ACTGAGACTCATTTGGGCTCAAT 59.990 43.478 5.42 0.00 35.43 2.57
2956 3029 2.373169 ACTGAGACTCATTTGGGCTCAA 59.627 45.455 5.42 0.00 35.43 3.02
2957 3030 1.980765 ACTGAGACTCATTTGGGCTCA 59.019 47.619 5.42 0.00 34.71 4.26
2958 3031 2.746362 CAACTGAGACTCATTTGGGCTC 59.254 50.000 21.84 0.00 34.59 4.70
2959 3032 2.373169 TCAACTGAGACTCATTTGGGCT 59.627 45.455 26.35 0.00 37.55 5.19
2960 3033 2.746362 CTCAACTGAGACTCATTTGGGC 59.254 50.000 26.35 0.00 44.74 5.36
2961 3034 3.008375 TCCTCAACTGAGACTCATTTGGG 59.992 47.826 26.35 24.46 44.74 4.12
2962 3035 4.277515 TCCTCAACTGAGACTCATTTGG 57.722 45.455 26.35 19.16 44.74 3.28
2963 3036 6.349115 CCAAATCCTCAACTGAGACTCATTTG 60.349 42.308 23.00 23.00 44.74 2.32
2964 3037 5.709164 CCAAATCCTCAACTGAGACTCATTT 59.291 40.000 5.42 3.73 44.74 2.32
2965 3038 5.251764 CCAAATCCTCAACTGAGACTCATT 58.748 41.667 5.42 0.00 44.74 2.57
2966 3039 4.324099 CCCAAATCCTCAACTGAGACTCAT 60.324 45.833 5.42 0.00 44.74 2.90
2967 3040 3.008375 CCCAAATCCTCAACTGAGACTCA 59.992 47.826 8.33 4.78 44.74 3.41
2968 3041 3.604582 CCCAAATCCTCAACTGAGACTC 58.395 50.000 8.33 0.00 44.74 3.36
2969 3042 2.290577 GCCCAAATCCTCAACTGAGACT 60.291 50.000 8.33 0.00 44.74 3.24
2970 3043 2.087646 GCCCAAATCCTCAACTGAGAC 58.912 52.381 8.33 0.00 44.74 3.36
2971 3044 1.004745 GGCCCAAATCCTCAACTGAGA 59.995 52.381 8.33 0.00 44.74 3.27
2972 3045 1.272092 TGGCCCAAATCCTCAACTGAG 60.272 52.381 0.00 0.00 41.71 3.35
2973 3046 0.776810 TGGCCCAAATCCTCAACTGA 59.223 50.000 0.00 0.00 0.00 3.41
2974 3047 0.890683 GTGGCCCAAATCCTCAACTG 59.109 55.000 0.00 0.00 0.00 3.16
3374 3447 2.642154 TACTTTGTTTTGCTCGGGGA 57.358 45.000 0.00 0.00 0.00 4.81
3426 3500 0.531532 CTGCAAGCGTCATCCCCTAG 60.532 60.000 0.00 0.00 0.00 3.02
3497 3571 2.427095 GCAACTGGACTTCTGGTTTGTT 59.573 45.455 0.00 0.00 0.00 2.83
3587 3662 6.027482 ACTAGAGGGTGGGTTTTATAACTCA 58.973 40.000 0.00 0.00 42.40 3.41
3729 3806 0.706433 ATGCCCATTCCCTGAGTTGT 59.294 50.000 0.00 0.00 0.00 3.32
3945 4052 2.040939 CAATTGCATGCCCATTCCCTA 58.959 47.619 16.68 0.00 0.00 3.53
4059 4166 0.614415 TGCAATTCATGTCCACCCCC 60.614 55.000 0.00 0.00 0.00 5.40
4215 4327 2.412870 CTTATCTTGTGTGTCGTGCCA 58.587 47.619 0.00 0.00 0.00 4.92
4219 4331 6.040878 GGTTATAGCTTATCTTGTGTGTCGT 58.959 40.000 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.