Multiple sequence alignment - TraesCS7D01G403500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G403500 chr7D 100.000 7218 0 0 1 7218 520420250 520413033 0.000000e+00 13330.0
1 TraesCS7D01G403500 chr7D 91.786 487 23 9 6618 7095 638016636 638017114 0.000000e+00 662.0
2 TraesCS7D01G403500 chr7B 93.327 4975 210 45 625 5528 553644200 553639277 0.000000e+00 7236.0
3 TraesCS7D01G403500 chr7B 92.232 1429 52 29 5814 7218 553638705 553637312 0.000000e+00 1969.0
4 TraesCS7D01G403500 chr7B 95.192 208 5 5 132 336 553644474 553644269 2.510000e-84 324.0
5 TraesCS7D01G403500 chr7B 88.652 141 7 2 5524 5655 553638847 553638707 5.790000e-36 163.0
6 TraesCS7D01G403500 chr7B 97.826 46 1 0 349 394 2228358 2228313 6.000000e-11 80.5
7 TraesCS7D01G403500 chr7A 92.304 1897 91 30 630 2493 596737600 596735726 0.000000e+00 2643.0
8 TraesCS7D01G403500 chr7A 92.966 1635 68 13 2477 4101 596735542 596733945 0.000000e+00 2338.0
9 TraesCS7D01G403500 chr7A 91.394 1743 61 26 5530 7218 596731879 596730172 0.000000e+00 2305.0
10 TraesCS7D01G403500 chr7A 90.650 1476 76 17 4086 5528 596733760 596732314 0.000000e+00 1905.0
11 TraesCS7D01G403500 chr7A 91.686 433 16 7 6786 7218 517128098 517128510 3.750000e-162 582.0
12 TraesCS7D01G403500 chr7A 84.226 336 37 4 1 334 596737990 596737669 5.440000e-81 313.0
13 TraesCS7D01G403500 chr7A 89.326 178 17 2 452 629 596660513 596660688 9.420000e-54 222.0
14 TraesCS7D01G403500 chr6B 90.762 433 21 7 6786 7218 103259395 103259808 1.760000e-155 560.0
15 TraesCS7D01G403500 chr6B 95.918 49 2 0 349 397 287601716 287601668 6.000000e-11 80.5
16 TraesCS7D01G403500 chr6B 88.889 63 6 1 334 395 14339505 14339443 7.760000e-10 76.8
17 TraesCS7D01G403500 chr2B 87.578 483 42 9 6623 7095 227175228 227174754 1.770000e-150 544.0
18 TraesCS7D01G403500 chr2B 89.607 433 25 8 6786 7218 755391625 755391213 3.830000e-147 532.0
19 TraesCS7D01G403500 chr2B 95.092 163 7 1 463 625 657785813 657785974 9.290000e-64 255.0
20 TraesCS7D01G403500 chrUn 89.607 433 25 8 6786 7218 184899845 184900257 3.830000e-147 532.0
21 TraesCS7D01G403500 chrUn 93.023 129 6 2 7091 7218 218749831 218749705 1.240000e-42 185.0
22 TraesCS7D01G403500 chr5B 89.145 433 28 6 6786 7218 553580054 553579641 8.300000e-144 521.0
23 TraesCS7D01G403500 chr2A 89.145 433 28 8 6786 7218 82805698 82805285 8.300000e-144 521.0
24 TraesCS7D01G403500 chr2A 100.000 29 0 0 641 669 115807670 115807642 4.000000e-03 54.7
25 TraesCS7D01G403500 chr3B 89.250 400 26 6 6786 7185 406134659 406134277 1.090000e-132 484.0
26 TraesCS7D01G403500 chr3B 90.110 182 14 4 446 625 834501 834322 4.350000e-57 233.0
27 TraesCS7D01G403500 chr3B 87.097 186 22 2 451 636 748432782 748432599 7.340000e-50 209.0
28 TraesCS7D01G403500 chr1D 96.933 163 5 0 463 625 450216785 450216623 2.570000e-69 274.0
29 TraesCS7D01G403500 chr6D 95.706 163 7 0 463 625 2150631 2150793 5.550000e-66 263.0
30 TraesCS7D01G403500 chr6D 94.012 167 9 1 459 625 204160183 204160018 1.200000e-62 252.0
31 TraesCS7D01G403500 chr3D 95.706 163 7 0 463 625 459335089 459335251 5.550000e-66 263.0
32 TraesCS7D01G403500 chr3D 90.110 182 15 3 445 625 525470934 525471113 4.350000e-57 233.0
33 TraesCS7D01G403500 chr3D 88.701 177 18 2 447 622 469389255 469389430 1.580000e-51 215.0
34 TraesCS7D01G403500 chr3D 93.220 59 4 0 334 392 422648397 422648339 3.590000e-13 87.9
35 TraesCS7D01G403500 chr3D 91.667 60 4 1 334 392 122572175 122572234 1.670000e-11 82.4
36 TraesCS7D01G403500 chr3A 93.182 176 9 3 453 626 745031189 745031363 9.290000e-64 255.0
37 TraesCS7D01G403500 chr3A 91.667 60 4 1 334 392 638911073 638911014 1.670000e-11 82.4
38 TraesCS7D01G403500 chr5D 93.103 174 11 1 459 632 151671544 151671716 3.340000e-63 254.0
39 TraesCS7D01G403500 chr5D 94.012 167 9 1 459 625 390354141 390353976 1.200000e-62 252.0
40 TraesCS7D01G403500 chr5D 88.525 61 5 1 334 392 172854818 172854878 1.000000e-08 73.1
41 TraesCS7D01G403500 chr5D 88.525 61 5 1 334 392 172876825 172876885 1.000000e-08 73.1
42 TraesCS7D01G403500 chr4D 94.479 163 8 1 463 625 484111764 484111925 4.320000e-62 250.0
43 TraesCS7D01G403500 chr4D 89.888 178 16 2 448 625 255530500 255530675 2.030000e-55 228.0
44 TraesCS7D01G403500 chr4D 97.917 48 1 0 350 397 428984595 428984548 4.640000e-12 84.2
45 TraesCS7D01G403500 chr2D 89.205 176 17 2 451 626 78767937 78768110 1.220000e-52 219.0
46 TraesCS7D01G403500 chr4B 89.080 174 17 2 452 625 660120590 660120761 1.580000e-51 215.0
47 TraesCS7D01G403500 chr4B 94.118 68 2 1 7151 7218 619768444 619768509 1.280000e-17 102.0
48 TraesCS7D01G403500 chr5A 94.444 36 2 0 634 669 453521384 453521419 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G403500 chr7D 520413033 520420250 7217 True 13330.0 13330 100.00000 1 7218 1 chr7D.!!$R1 7217
1 TraesCS7D01G403500 chr7B 553637312 553644474 7162 True 2423.0 7236 92.35075 132 7218 4 chr7B.!!$R2 7086
2 TraesCS7D01G403500 chr7A 596730172 596737990 7818 True 1900.8 2643 90.30800 1 7218 5 chr7A.!!$R1 7217

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
107 108 0.035820 AAATCTTAGCCGCCCGTCAA 60.036 50.000 0.00 0.00 0.00 3.18 F
357 361 0.395311 CCTCCGTCCCAGCTAGTACA 60.395 60.000 0.00 0.00 0.00 2.90 F
1070 1090 0.105862 TCCGTAATCCCGTCTCCCAT 60.106 55.000 0.00 0.00 0.00 4.00 F
1609 1661 0.534427 ATGATCAGGTGCTCATGCGG 60.534 55.000 0.09 0.00 43.34 5.69 F
2438 2495 1.000717 GGTTTTGCACGCAAGGTATGT 60.001 47.619 4.43 0.00 46.39 2.29 F
3500 3770 2.778299 TGAGTGGTTGTGGCATACTTC 58.222 47.619 0.00 0.00 0.00 3.01 F
3970 4240 1.202582 ACGCGTCTAGAGCAGAATTGT 59.797 47.619 5.58 1.62 34.17 2.71 F
5878 6837 0.464036 ACCTGAACTGACGACAAGCA 59.536 50.000 0.00 0.00 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1032 1052 0.039911 AGTAGAGGAGCTTCCGGTGT 59.960 55.000 0.00 0.00 42.75 4.16 R
1562 1606 0.108945 CTCTCACGCATGCTCTGACA 60.109 55.000 17.13 3.28 0.00 3.58 R
2819 3077 1.839424 AGGGAATGCGGAAGGAAAAG 58.161 50.000 0.00 0.00 32.68 2.27 R
3568 3838 1.556911 CAAGAGGCCAGGCTAAGAAGA 59.443 52.381 12.43 0.00 0.00 2.87 R
3569 3839 1.556911 TCAAGAGGCCAGGCTAAGAAG 59.443 52.381 12.43 0.00 0.00 2.85 R
4591 5064 0.666913 GGAGCCAAGCACATGCATAG 59.333 55.000 6.64 0.00 45.16 2.23 R
5882 6841 0.237235 AACAGCGCGTTACCACAATG 59.763 50.000 8.43 0.45 35.52 2.82 R
7051 8055 0.473326 GGGCAGCAGAAGAGATGGAT 59.527 55.000 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.221840 GGAGGCTGGAAAGCGATGA 59.778 57.895 0.00 0.00 35.24 2.92
40 41 1.424493 GAGGCTGGAAAGCGATGACG 61.424 60.000 0.00 0.00 42.93 4.35
107 108 0.035820 AAATCTTAGCCGCCCGTCAA 60.036 50.000 0.00 0.00 0.00 3.18
108 109 0.462047 AATCTTAGCCGCCCGTCAAG 60.462 55.000 0.00 0.00 0.00 3.02
110 111 1.519455 CTTAGCCGCCCGTCAAGAG 60.519 63.158 0.00 0.00 0.00 2.85
114 115 4.052229 CCGCCCGTCAAGAGTCGT 62.052 66.667 0.00 0.00 0.00 4.34
124 125 4.271776 CCGTCAAGAGTCGTTTACCTTTTT 59.728 41.667 0.00 0.00 0.00 1.94
127 128 7.401080 CGTCAAGAGTCGTTTACCTTTTTAAA 58.599 34.615 0.00 0.00 0.00 1.52
339 343 9.561069 TCTCAAGAAATATTAATTGCTACTCCC 57.439 33.333 0.00 0.00 28.71 4.30
340 344 9.566432 CTCAAGAAATATTAATTGCTACTCCCT 57.434 33.333 0.00 0.00 28.71 4.20
341 345 9.561069 TCAAGAAATATTAATTGCTACTCCCTC 57.439 33.333 0.00 0.00 28.71 4.30
342 346 8.787852 CAAGAAATATTAATTGCTACTCCCTCC 58.212 37.037 0.00 0.00 28.71 4.30
343 347 7.162082 AGAAATATTAATTGCTACTCCCTCCG 58.838 38.462 0.00 0.00 28.21 4.63
344 348 6.435292 AATATTAATTGCTACTCCCTCCGT 57.565 37.500 0.00 0.00 0.00 4.69
345 349 3.814005 TTAATTGCTACTCCCTCCGTC 57.186 47.619 0.00 0.00 0.00 4.79
346 350 0.831307 AATTGCTACTCCCTCCGTCC 59.169 55.000 0.00 0.00 0.00 4.79
347 351 1.049289 ATTGCTACTCCCTCCGTCCC 61.049 60.000 0.00 0.00 0.00 4.46
348 352 2.043248 GCTACTCCCTCCGTCCCA 60.043 66.667 0.00 0.00 0.00 4.37
349 353 2.128507 GCTACTCCCTCCGTCCCAG 61.129 68.421 0.00 0.00 0.00 4.45
350 354 2.043248 TACTCCCTCCGTCCCAGC 60.043 66.667 0.00 0.00 0.00 4.85
351 355 2.575455 CTACTCCCTCCGTCCCAGCT 62.575 65.000 0.00 0.00 0.00 4.24
352 356 1.284111 TACTCCCTCCGTCCCAGCTA 61.284 60.000 0.00 0.00 0.00 3.32
353 357 1.830408 CTCCCTCCGTCCCAGCTAG 60.830 68.421 0.00 0.00 0.00 3.42
354 358 2.042843 CCCTCCGTCCCAGCTAGT 60.043 66.667 0.00 0.00 0.00 2.57
355 359 1.229359 CCCTCCGTCCCAGCTAGTA 59.771 63.158 0.00 0.00 0.00 1.82
356 360 1.108132 CCCTCCGTCCCAGCTAGTAC 61.108 65.000 0.00 0.00 0.00 2.73
357 361 0.395311 CCTCCGTCCCAGCTAGTACA 60.395 60.000 0.00 0.00 0.00 2.90
358 362 1.471119 CTCCGTCCCAGCTAGTACAA 58.529 55.000 0.00 0.00 0.00 2.41
359 363 1.822990 CTCCGTCCCAGCTAGTACAAA 59.177 52.381 0.00 0.00 0.00 2.83
360 364 1.822990 TCCGTCCCAGCTAGTACAAAG 59.177 52.381 0.00 0.00 0.00 2.77
361 365 1.549170 CCGTCCCAGCTAGTACAAAGT 59.451 52.381 0.00 0.00 0.00 2.66
362 366 2.028385 CCGTCCCAGCTAGTACAAAGTT 60.028 50.000 0.00 0.00 0.00 2.66
363 367 2.993899 CGTCCCAGCTAGTACAAAGTTG 59.006 50.000 0.00 0.35 0.00 3.16
364 368 3.305813 CGTCCCAGCTAGTACAAAGTTGA 60.306 47.826 11.89 0.00 0.00 3.18
365 369 4.246458 GTCCCAGCTAGTACAAAGTTGAG 58.754 47.826 11.89 1.72 0.00 3.02
366 370 3.901844 TCCCAGCTAGTACAAAGTTGAGT 59.098 43.478 11.89 0.00 0.00 3.41
367 371 4.021368 TCCCAGCTAGTACAAAGTTGAGTC 60.021 45.833 11.89 0.00 0.00 3.36
368 372 4.262463 CCCAGCTAGTACAAAGTTGAGTCA 60.262 45.833 11.89 0.00 0.00 3.41
369 373 4.686554 CCAGCTAGTACAAAGTTGAGTCAC 59.313 45.833 11.89 0.00 0.00 3.67
370 374 5.509840 CCAGCTAGTACAAAGTTGAGTCACT 60.510 44.000 11.89 0.00 0.00 3.41
371 375 5.986135 CAGCTAGTACAAAGTTGAGTCACTT 59.014 40.000 6.32 0.00 38.74 3.16
372 376 7.145985 CAGCTAGTACAAAGTTGAGTCACTTA 58.854 38.462 6.32 0.00 35.87 2.24
373 377 7.815068 CAGCTAGTACAAAGTTGAGTCACTTAT 59.185 37.037 6.32 0.00 35.87 1.73
374 378 8.368668 AGCTAGTACAAAGTTGAGTCACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
375 379 8.989980 GCTAGTACAAAGTTGAGTCACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
380 384 8.974060 ACAAAGTTGAGTCACTTATTTTAGGA 57.026 30.769 0.00 0.00 35.87 2.94
381 385 8.837389 ACAAAGTTGAGTCACTTATTTTAGGAC 58.163 33.333 0.00 0.00 35.87 3.85
382 386 7.653767 AAGTTGAGTCACTTATTTTAGGACG 57.346 36.000 0.00 0.00 35.10 4.79
383 387 6.164176 AGTTGAGTCACTTATTTTAGGACGG 58.836 40.000 0.00 0.00 33.84 4.79
384 388 5.988310 TGAGTCACTTATTTTAGGACGGA 57.012 39.130 0.00 0.00 33.84 4.69
385 389 5.962433 TGAGTCACTTATTTTAGGACGGAG 58.038 41.667 0.00 0.00 33.84 4.63
386 390 5.105473 TGAGTCACTTATTTTAGGACGGAGG 60.105 44.000 0.00 0.00 33.84 4.30
387 391 5.021458 AGTCACTTATTTTAGGACGGAGGA 58.979 41.667 0.00 0.00 33.84 3.71
388 392 5.482878 AGTCACTTATTTTAGGACGGAGGAA 59.517 40.000 0.00 0.00 33.84 3.36
389 393 5.811100 GTCACTTATTTTAGGACGGAGGAAG 59.189 44.000 0.00 0.00 0.00 3.46
390 394 5.482878 TCACTTATTTTAGGACGGAGGAAGT 59.517 40.000 0.00 0.00 0.00 3.01
391 395 6.664816 TCACTTATTTTAGGACGGAGGAAGTA 59.335 38.462 0.00 0.00 0.00 2.24
392 396 7.343833 TCACTTATTTTAGGACGGAGGAAGTAT 59.656 37.037 0.00 0.00 0.00 2.12
461 465 7.065324 CGTTGGGTAGTTATCAGCATTCTAAAA 59.935 37.037 0.00 0.00 0.00 1.52
462 466 8.903820 GTTGGGTAGTTATCAGCATTCTAAAAT 58.096 33.333 0.00 0.00 0.00 1.82
464 468 9.555727 TGGGTAGTTATCAGCATTCTAAAATAC 57.444 33.333 0.00 0.00 0.00 1.89
465 469 9.780186 GGGTAGTTATCAGCATTCTAAAATACT 57.220 33.333 0.00 0.00 0.00 2.12
468 472 8.910351 AGTTATCAGCATTCTAAAATACTCCC 57.090 34.615 0.00 0.00 0.00 4.30
469 473 8.718656 AGTTATCAGCATTCTAAAATACTCCCT 58.281 33.333 0.00 0.00 0.00 4.20
470 474 8.994170 GTTATCAGCATTCTAAAATACTCCCTC 58.006 37.037 0.00 0.00 0.00 4.30
471 475 5.930135 TCAGCATTCTAAAATACTCCCTCC 58.070 41.667 0.00 0.00 0.00 4.30
472 476 4.752101 CAGCATTCTAAAATACTCCCTCCG 59.248 45.833 0.00 0.00 0.00 4.63
473 477 4.409247 AGCATTCTAAAATACTCCCTCCGT 59.591 41.667 0.00 0.00 0.00 4.69
474 478 5.104485 AGCATTCTAAAATACTCCCTCCGTT 60.104 40.000 0.00 0.00 0.00 4.44
475 479 5.236695 GCATTCTAAAATACTCCCTCCGTTC 59.763 44.000 0.00 0.00 0.00 3.95
476 480 5.349061 TTCTAAAATACTCCCTCCGTTCC 57.651 43.478 0.00 0.00 0.00 3.62
477 481 4.617593 TCTAAAATACTCCCTCCGTTCCT 58.382 43.478 0.00 0.00 0.00 3.36
478 482 5.769835 TCTAAAATACTCCCTCCGTTCCTA 58.230 41.667 0.00 0.00 0.00 2.94
479 483 6.197168 TCTAAAATACTCCCTCCGTTCCTAA 58.803 40.000 0.00 0.00 0.00 2.69
480 484 5.767277 AAAATACTCCCTCCGTTCCTAAA 57.233 39.130 0.00 0.00 0.00 1.85
481 485 5.970501 AAATACTCCCTCCGTTCCTAAAT 57.029 39.130 0.00 0.00 0.00 1.40
482 486 7.441903 AAAATACTCCCTCCGTTCCTAAATA 57.558 36.000 0.00 0.00 0.00 1.40
483 487 7.628501 AAATACTCCCTCCGTTCCTAAATAT 57.371 36.000 0.00 0.00 0.00 1.28
484 488 8.731591 AAATACTCCCTCCGTTCCTAAATATA 57.268 34.615 0.00 0.00 0.00 0.86
485 489 8.731591 AATACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
486 490 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
487 491 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
488 492 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
489 493 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
490 494 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
491 495 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
492 496 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
493 497 7.441458 CCTCCGTTCCTAAATATAAGTCTTTGG 59.559 40.741 0.00 0.00 0.00 3.28
494 498 8.081517 TCCGTTCCTAAATATAAGTCTTTGGA 57.918 34.615 0.00 0.00 0.00 3.53
495 499 8.202137 TCCGTTCCTAAATATAAGTCTTTGGAG 58.798 37.037 0.00 0.00 0.00 3.86
496 500 8.202137 CCGTTCCTAAATATAAGTCTTTGGAGA 58.798 37.037 0.00 0.00 0.00 3.71
497 501 9.250624 CGTTCCTAAATATAAGTCTTTGGAGAG 57.749 37.037 0.00 0.00 31.07 3.20
520 524 3.762407 TCCATTATGGACCACATACGG 57.238 47.619 10.29 0.00 42.67 4.02
521 525 3.310193 TCCATTATGGACCACATACGGA 58.690 45.455 10.29 0.00 42.67 4.69
522 526 3.323691 TCCATTATGGACCACATACGGAG 59.676 47.826 10.29 0.00 42.67 4.63
523 527 2.902705 TTATGGACCACATACGGAGC 57.097 50.000 0.00 0.00 41.61 4.70
524 528 1.783071 TATGGACCACATACGGAGCA 58.217 50.000 0.00 0.00 41.03 4.26
525 529 0.908910 ATGGACCACATACGGAGCAA 59.091 50.000 0.00 0.00 38.26 3.91
526 530 0.687920 TGGACCACATACGGAGCAAA 59.312 50.000 0.00 0.00 0.00 3.68
527 531 1.072489 TGGACCACATACGGAGCAAAA 59.928 47.619 0.00 0.00 0.00 2.44
528 532 2.290641 TGGACCACATACGGAGCAAAAT 60.291 45.455 0.00 0.00 0.00 1.82
529 533 2.097466 GGACCACATACGGAGCAAAATG 59.903 50.000 0.00 0.00 0.00 2.32
530 534 3.006940 GACCACATACGGAGCAAAATGA 58.993 45.455 0.00 0.00 0.00 2.57
531 535 3.009723 ACCACATACGGAGCAAAATGAG 58.990 45.455 0.00 0.00 0.00 2.90
532 536 3.009723 CCACATACGGAGCAAAATGAGT 58.990 45.455 0.00 0.00 0.00 3.41
533 537 3.181507 CCACATACGGAGCAAAATGAGTG 60.182 47.826 0.00 0.00 0.00 3.51
534 538 3.684305 CACATACGGAGCAAAATGAGTGA 59.316 43.478 0.00 0.00 0.00 3.41
535 539 4.154015 CACATACGGAGCAAAATGAGTGAA 59.846 41.667 0.00 0.00 0.00 3.18
536 540 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
537 541 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
538 542 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
539 543 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
540 544 5.431765 ACGGAGCAAAATGAGTGAATCTAT 58.568 37.500 0.00 0.00 0.00 1.98
541 545 6.582636 ACGGAGCAAAATGAGTGAATCTATA 58.417 36.000 0.00 0.00 0.00 1.31
542 546 6.480320 ACGGAGCAAAATGAGTGAATCTATAC 59.520 38.462 0.00 0.00 0.00 1.47
543 547 6.703607 CGGAGCAAAATGAGTGAATCTATACT 59.296 38.462 0.00 0.00 0.00 2.12
544 548 7.095857 CGGAGCAAAATGAGTGAATCTATACTC 60.096 40.741 0.00 0.00 42.77 2.59
545 549 7.930865 GGAGCAAAATGAGTGAATCTATACTCT 59.069 37.037 0.00 0.00 42.86 3.24
546 550 9.973450 GAGCAAAATGAGTGAATCTATACTCTA 57.027 33.333 0.00 0.00 42.86 2.43
575 579 8.962884 TGCATTTAGATACATCTGTATGTTGT 57.037 30.769 7.55 0.00 44.07 3.32
576 580 9.045223 TGCATTTAGATACATCTGTATGTTGTC 57.955 33.333 7.55 0.00 44.07 3.18
577 581 8.499162 GCATTTAGATACATCTGTATGTTGTCC 58.501 37.037 7.55 0.00 44.07 4.02
578 582 9.546428 CATTTAGATACATCTGTATGTTGTCCA 57.454 33.333 7.55 0.00 44.07 4.02
582 586 8.484214 AGATACATCTGTATGTTGTCCATAGT 57.516 34.615 7.55 0.00 44.07 2.12
583 587 8.363390 AGATACATCTGTATGTTGTCCATAGTG 58.637 37.037 7.55 0.00 44.07 2.74
584 588 6.544928 ACATCTGTATGTTGTCCATAGTGA 57.455 37.500 0.00 0.00 44.07 3.41
585 589 6.946340 ACATCTGTATGTTGTCCATAGTGAA 58.054 36.000 0.00 0.00 44.07 3.18
586 590 7.394016 ACATCTGTATGTTGTCCATAGTGAAA 58.606 34.615 0.00 0.00 44.07 2.69
587 591 7.882791 ACATCTGTATGTTGTCCATAGTGAAAA 59.117 33.333 0.00 0.00 44.07 2.29
588 592 8.896744 CATCTGTATGTTGTCCATAGTGAAAAT 58.103 33.333 0.00 0.00 36.71 1.82
589 593 8.492673 TCTGTATGTTGTCCATAGTGAAAATC 57.507 34.615 0.00 0.00 36.71 2.17
590 594 8.321353 TCTGTATGTTGTCCATAGTGAAAATCT 58.679 33.333 0.00 0.00 36.71 2.40
591 595 8.492673 TGTATGTTGTCCATAGTGAAAATCTC 57.507 34.615 0.00 0.00 36.71 2.75
592 596 8.321353 TGTATGTTGTCCATAGTGAAAATCTCT 58.679 33.333 0.00 0.00 36.71 3.10
593 597 7.621428 ATGTTGTCCATAGTGAAAATCTCTG 57.379 36.000 0.00 0.00 29.82 3.35
594 598 5.412594 TGTTGTCCATAGTGAAAATCTCTGC 59.587 40.000 0.00 0.00 0.00 4.26
595 599 5.164620 TGTCCATAGTGAAAATCTCTGCA 57.835 39.130 0.00 0.00 0.00 4.41
596 600 5.559770 TGTCCATAGTGAAAATCTCTGCAA 58.440 37.500 0.00 0.00 0.00 4.08
597 601 6.003326 TGTCCATAGTGAAAATCTCTGCAAA 58.997 36.000 0.00 0.00 0.00 3.68
598 602 6.149973 TGTCCATAGTGAAAATCTCTGCAAAG 59.850 38.462 0.00 0.00 0.00 2.77
599 603 6.372659 GTCCATAGTGAAAATCTCTGCAAAGA 59.627 38.462 0.00 0.00 0.00 2.52
600 604 6.372659 TCCATAGTGAAAATCTCTGCAAAGAC 59.627 38.462 0.00 0.00 0.00 3.01
601 605 6.373774 CCATAGTGAAAATCTCTGCAAAGACT 59.626 38.462 0.00 0.00 0.00 3.24
602 606 7.094463 CCATAGTGAAAATCTCTGCAAAGACTT 60.094 37.037 0.00 0.00 0.00 3.01
603 607 8.939929 CATAGTGAAAATCTCTGCAAAGACTTA 58.060 33.333 0.00 0.00 0.00 2.24
604 608 7.195839 AGTGAAAATCTCTGCAAAGACTTAC 57.804 36.000 0.00 0.00 0.00 2.34
605 609 6.767902 AGTGAAAATCTCTGCAAAGACTTACA 59.232 34.615 0.00 0.00 0.00 2.41
606 610 7.446625 AGTGAAAATCTCTGCAAAGACTTACAT 59.553 33.333 0.00 0.00 0.00 2.29
607 611 8.078596 GTGAAAATCTCTGCAAAGACTTACATT 58.921 33.333 0.00 0.00 0.00 2.71
608 612 8.632679 TGAAAATCTCTGCAAAGACTTACATTT 58.367 29.630 0.00 0.00 0.00 2.32
611 615 9.507329 AAATCTCTGCAAAGACTTACATTTAGA 57.493 29.630 0.00 0.00 0.00 2.10
612 616 9.507329 AATCTCTGCAAAGACTTACATTTAGAA 57.493 29.630 0.00 0.00 0.00 2.10
613 617 8.902540 TCTCTGCAAAGACTTACATTTAGAAA 57.097 30.769 0.00 0.00 0.00 2.52
614 618 8.774586 TCTCTGCAAAGACTTACATTTAGAAAC 58.225 33.333 0.00 0.00 0.00 2.78
615 619 8.445275 TCTGCAAAGACTTACATTTAGAAACA 57.555 30.769 0.00 0.00 0.00 2.83
616 620 8.559536 TCTGCAAAGACTTACATTTAGAAACAG 58.440 33.333 0.00 0.00 0.00 3.16
617 621 8.445275 TGCAAAGACTTACATTTAGAAACAGA 57.555 30.769 0.00 0.00 0.00 3.41
618 622 8.559536 TGCAAAGACTTACATTTAGAAACAGAG 58.440 33.333 0.00 0.00 0.00 3.35
619 623 8.017946 GCAAAGACTTACATTTAGAAACAGAGG 58.982 37.037 0.00 0.00 0.00 3.69
620 624 8.507249 CAAAGACTTACATTTAGAAACAGAGGG 58.493 37.037 0.00 0.00 0.00 4.30
621 625 7.554959 AGACTTACATTTAGAAACAGAGGGA 57.445 36.000 0.00 0.00 0.00 4.20
622 626 7.616313 AGACTTACATTTAGAAACAGAGGGAG 58.384 38.462 0.00 0.00 0.00 4.30
623 627 7.235812 AGACTTACATTTAGAAACAGAGGGAGT 59.764 37.037 0.00 0.00 0.00 3.85
633 637 7.362802 AGAAACAGAGGGAGTATATGTTACC 57.637 40.000 0.00 0.00 33.17 2.85
635 639 8.287350 AGAAACAGAGGGAGTATATGTTACCTA 58.713 37.037 0.00 0.00 33.17 3.08
704 723 9.015367 GTAATCAGATGTAACCTGCTAGATAGA 57.985 37.037 0.00 0.00 0.00 1.98
705 724 8.484214 AATCAGATGTAACCTGCTAGATAGAA 57.516 34.615 0.00 0.00 0.00 2.10
711 730 6.875076 TGTAACCTGCTAGATAGAAAAGGTC 58.125 40.000 0.00 1.78 34.27 3.85
757 776 5.723355 TCTATGTAGGCCCTTATACCTTGT 58.277 41.667 0.00 0.00 37.50 3.16
776 795 4.168922 TGTCCCATATTACTATCGCGTG 57.831 45.455 5.77 0.00 0.00 5.34
816 836 1.003718 CTCGGGAAAAAGAGGCGGT 60.004 57.895 0.00 0.00 0.00 5.68
888 908 4.796231 GATCCACGCGCTCACGGT 62.796 66.667 5.73 0.00 40.57 4.83
889 909 3.405592 GATCCACGCGCTCACGGTA 62.406 63.158 5.73 0.00 40.57 4.02
914 934 0.988832 TTCATAACCCACGCCCTTCT 59.011 50.000 0.00 0.00 0.00 2.85
1027 1047 2.695970 CCGTCCTCCTCCTCCTCCT 61.696 68.421 0.00 0.00 0.00 3.69
1031 1051 2.612251 CTCCTCCTCCTCCTCCCC 59.388 72.222 0.00 0.00 0.00 4.81
1032 1052 2.204624 TCCTCCTCCTCCTCCCCA 60.205 66.667 0.00 0.00 0.00 4.96
1033 1053 2.041405 CCTCCTCCTCCTCCCCAC 60.041 72.222 0.00 0.00 0.00 4.61
1048 1068 2.286523 CCACACCGGAAGCTCCTCT 61.287 63.158 9.46 0.00 36.56 3.69
1062 1082 2.152830 CTCCTCTACTCCGTAATCCCG 58.847 57.143 0.00 0.00 0.00 5.14
1070 1090 0.105862 TCCGTAATCCCGTCTCCCAT 60.106 55.000 0.00 0.00 0.00 4.00
1087 1107 1.392589 CATCTCAAAATCCACCCCGG 58.607 55.000 0.00 0.00 0.00 5.73
1103 1129 1.595357 CGGTTCCGCCCTTCTACTT 59.405 57.895 0.00 0.00 0.00 2.24
1106 1132 0.903236 GTTCCGCCCTTCTACTTCCT 59.097 55.000 0.00 0.00 0.00 3.36
1121 1147 0.603569 TTCCTTCCTCACAGCTCGTC 59.396 55.000 0.00 0.00 0.00 4.20
1416 1460 2.301346 CTGGAGAAATGGGGTATGTGC 58.699 52.381 0.00 0.00 0.00 4.57
1539 1583 7.540474 AACAATGTCAGTAAGTTCTCTCCTA 57.460 36.000 0.00 0.00 0.00 2.94
1562 1606 4.971924 AGGTTCCATCTTCAGTTATAGCCT 59.028 41.667 0.00 0.00 0.00 4.58
1565 1609 5.537300 TCCATCTTCAGTTATAGCCTGTC 57.463 43.478 2.52 0.00 0.00 3.51
1603 1655 3.808466 TGTGTAGATGATCAGGTGCTC 57.192 47.619 0.09 0.00 0.00 4.26
1604 1656 3.099141 TGTGTAGATGATCAGGTGCTCA 58.901 45.455 0.09 0.00 0.00 4.26
1605 1657 3.708121 TGTGTAGATGATCAGGTGCTCAT 59.292 43.478 0.09 0.00 34.02 2.90
1606 1658 4.056740 GTGTAGATGATCAGGTGCTCATG 58.943 47.826 0.09 0.00 31.77 3.07
1607 1659 2.257691 AGATGATCAGGTGCTCATGC 57.742 50.000 0.09 0.00 31.77 4.06
1608 1660 0.866427 GATGATCAGGTGCTCATGCG 59.134 55.000 0.09 0.00 43.34 4.73
1609 1661 0.534427 ATGATCAGGTGCTCATGCGG 60.534 55.000 0.09 0.00 43.34 5.69
1610 1662 1.153289 GATCAGGTGCTCATGCGGT 60.153 57.895 0.00 0.00 43.34 5.68
1626 1678 1.675483 GCGGTCATGCCATCAACATTA 59.325 47.619 6.92 0.00 36.97 1.90
2403 2460 5.009854 TGACGCTGATATTGATGACTTCA 57.990 39.130 0.00 0.00 0.00 3.02
2438 2495 1.000717 GGTTTTGCACGCAAGGTATGT 60.001 47.619 4.43 0.00 46.39 2.29
2819 3077 6.544931 TCTTCTCATCAATCACATCCCAATTC 59.455 38.462 0.00 0.00 0.00 2.17
2894 3152 2.808202 GCCCAGTGCCTACATATCACAG 60.808 54.545 0.00 0.00 33.44 3.66
2903 3161 7.671819 AGTGCCTACATATCACAGTGACTATAT 59.328 37.037 5.05 0.00 33.44 0.86
2975 3243 7.038659 TGCTGTTTATTATGGGCATGTTAAAC 58.961 34.615 0.00 0.37 34.10 2.01
3257 3525 3.569701 GGATTGACCACACACAGATTTGT 59.430 43.478 0.00 0.00 36.93 2.83
3259 3527 5.240623 GGATTGACCACACACAGATTTGTAA 59.759 40.000 0.00 0.00 35.58 2.41
3260 3528 5.749596 TTGACCACACACAGATTTGTAAG 57.250 39.130 0.00 0.00 35.25 2.34
3270 3538 7.602644 ACACACAGATTTGTAAGGTGTATACTG 59.397 37.037 8.64 0.00 39.06 2.74
3286 3554 7.282224 GGTGTATACTGATGTCCATGCTTTTTA 59.718 37.037 4.17 0.00 0.00 1.52
3338 3608 3.554934 ACTGATTTCTGCACTGAAACCA 58.445 40.909 3.47 0.00 38.54 3.67
3354 3624 4.889409 TGAAACCAATATCCCTGCTGATTC 59.111 41.667 0.00 0.00 0.00 2.52
3356 3626 4.096190 ACCAATATCCCTGCTGATTCAG 57.904 45.455 9.40 9.40 34.12 3.02
3500 3770 2.778299 TGAGTGGTTGTGGCATACTTC 58.222 47.619 0.00 0.00 0.00 3.01
3526 3796 8.356657 CCAGTTTTTATTGTTGAACATCCAGTA 58.643 33.333 0.00 0.00 0.00 2.74
3567 3837 2.975489 TCTCTGTTCTTGCCTCTTCCTT 59.025 45.455 0.00 0.00 0.00 3.36
3568 3838 3.392616 TCTCTGTTCTTGCCTCTTCCTTT 59.607 43.478 0.00 0.00 0.00 3.11
3569 3839 3.744660 TCTGTTCTTGCCTCTTCCTTTC 58.255 45.455 0.00 0.00 0.00 2.62
3570 3840 3.392616 TCTGTTCTTGCCTCTTCCTTTCT 59.607 43.478 0.00 0.00 0.00 2.52
3581 3851 4.512484 CTCTTCCTTTCTTCTTAGCCTGG 58.488 47.826 0.00 0.00 0.00 4.45
3590 3860 1.885049 TCTTAGCCTGGCCTCTTGAT 58.115 50.000 16.57 0.00 0.00 2.57
3601 3871 2.297033 GGCCTCTTGATTGCTTGTTTGA 59.703 45.455 0.00 0.00 0.00 2.69
3645 3915 5.046735 TCAGAACTTAGCAATTGAGCTCTCT 60.047 40.000 16.19 1.46 45.26 3.10
3682 3952 9.565213 CAATAAGTTCTGGATCAAGAAATGTTC 57.435 33.333 14.33 1.91 37.90 3.18
3869 4139 5.439721 TGGCTGCTAGACATATTTTCATGT 58.560 37.500 0.00 0.00 41.83 3.21
3896 4166 3.373439 TGCCAACATTGTTTTGCTCAAAC 59.627 39.130 17.15 5.42 44.64 2.93
3915 4185 1.845791 ACTGCCCATACATGATCCACA 59.154 47.619 0.00 0.00 0.00 4.17
3922 4192 3.637694 CCATACATGATCCACAATTGGCA 59.362 43.478 10.83 0.38 43.56 4.92
3927 4197 4.142026 ACATGATCCACAATTGGCATTCTG 60.142 41.667 10.83 0.00 43.56 3.02
3962 4232 3.411415 TTACCTAAACGCGTCTAGAGC 57.589 47.619 20.89 0.00 0.00 4.09
3970 4240 1.202582 ACGCGTCTAGAGCAGAATTGT 59.797 47.619 5.58 1.62 34.17 2.71
4125 4595 8.857098 CAGTAGTACTTATTTATCACTAGGGCA 58.143 37.037 0.00 0.00 0.00 5.36
4193 4663 4.084287 TGCTTGGAGATCTTTCATTTGCT 58.916 39.130 0.00 0.00 0.00 3.91
4212 4682 7.795431 TTTGCTTTCTATTTGCATTTCGTAG 57.205 32.000 0.00 0.00 36.55 3.51
4220 4690 5.895636 ATTTGCATTTCGTAGTTGATCCA 57.104 34.783 0.00 0.00 0.00 3.41
4230 4700 5.232463 TCGTAGTTGATCCACCTTGTTAAC 58.768 41.667 0.00 0.00 0.00 2.01
4355 4825 7.421530 TTGTCTTACAGTAACTGATTCTTGC 57.578 36.000 0.00 0.00 35.18 4.01
4391 4861 8.028354 TCAAACATATTTACAGTTGAAGGCATG 58.972 33.333 0.00 0.00 0.00 4.06
4392 4862 6.455360 ACATATTTACAGTTGAAGGCATGG 57.545 37.500 0.00 0.00 0.00 3.66
4399 4869 7.716799 TTACAGTTGAAGGCATGGATATTTT 57.283 32.000 0.00 0.00 0.00 1.82
4439 4909 8.035165 TCAAAACTTTGCGTTTGAGCTATATA 57.965 30.769 0.00 0.00 44.77 0.86
4440 4910 7.960738 TCAAAACTTTGCGTTTGAGCTATATAC 59.039 33.333 0.00 0.00 44.77 1.47
4441 4911 7.611213 AAACTTTGCGTTTGAGCTATATACT 57.389 32.000 0.00 0.00 43.90 2.12
4442 4912 6.589830 ACTTTGCGTTTGAGCTATATACTG 57.410 37.500 0.00 0.00 38.13 2.74
4443 4913 6.338146 ACTTTGCGTTTGAGCTATATACTGA 58.662 36.000 0.00 0.00 38.13 3.41
4444 4914 6.986817 ACTTTGCGTTTGAGCTATATACTGAT 59.013 34.615 0.00 0.00 38.13 2.90
4445 4915 6.769608 TTGCGTTTGAGCTATATACTGATG 57.230 37.500 0.00 0.00 38.13 3.07
4447 4917 6.977213 TGCGTTTGAGCTATATACTGATGTA 58.023 36.000 0.00 0.00 38.13 2.29
4448 4918 6.861572 TGCGTTTGAGCTATATACTGATGTAC 59.138 38.462 0.00 0.00 38.13 2.90
4454 4926 6.882678 TGAGCTATATACTGATGTACGCCTTA 59.117 38.462 0.00 0.00 0.00 2.69
4457 4929 7.556635 AGCTATATACTGATGTACGCCTTATCA 59.443 37.037 0.00 0.00 0.00 2.15
4498 4971 4.103342 AGAAAACCATTATGTTGGCCCAT 58.897 39.130 0.00 0.00 40.68 4.00
4499 4972 3.910568 AAACCATTATGTTGGCCCATG 57.089 42.857 0.00 0.00 40.68 3.66
4500 4973 2.548464 ACCATTATGTTGGCCCATGT 57.452 45.000 0.00 0.00 40.68 3.21
4501 4974 2.109774 ACCATTATGTTGGCCCATGTG 58.890 47.619 0.00 1.59 40.68 3.21
4503 4976 2.101249 CCATTATGTTGGCCCATGTGAC 59.899 50.000 0.00 0.00 0.00 3.67
4504 4977 2.593925 TTATGTTGGCCCATGTGACA 57.406 45.000 0.00 0.00 0.00 3.58
4505 4978 2.824689 TATGTTGGCCCATGTGACAT 57.175 45.000 0.00 4.32 35.36 3.06
4506 4979 1.941377 ATGTTGGCCCATGTGACATT 58.059 45.000 0.00 0.00 0.00 2.71
4507 4980 2.593925 TGTTGGCCCATGTGACATTA 57.406 45.000 0.00 0.00 0.00 1.90
4508 4981 3.098774 TGTTGGCCCATGTGACATTAT 57.901 42.857 0.00 0.00 0.00 1.28
4509 4982 3.439154 TGTTGGCCCATGTGACATTATT 58.561 40.909 0.00 0.00 0.00 1.40
4510 4983 4.604156 TGTTGGCCCATGTGACATTATTA 58.396 39.130 0.00 0.00 0.00 0.98
4511 4984 4.400884 TGTTGGCCCATGTGACATTATTAC 59.599 41.667 0.00 0.00 0.00 1.89
4512 4985 4.242336 TGGCCCATGTGACATTATTACA 57.758 40.909 0.00 0.00 0.00 2.41
4513 4986 4.604156 TGGCCCATGTGACATTATTACAA 58.396 39.130 0.00 0.00 0.00 2.41
4514 4987 4.400884 TGGCCCATGTGACATTATTACAAC 59.599 41.667 0.00 0.00 0.00 3.32
4515 4988 4.644685 GGCCCATGTGACATTATTACAACT 59.355 41.667 0.00 0.00 0.00 3.16
4516 4989 5.825679 GGCCCATGTGACATTATTACAACTA 59.174 40.000 0.00 0.00 0.00 2.24
4517 4990 6.017109 GGCCCATGTGACATTATTACAACTAG 60.017 42.308 0.00 0.00 0.00 2.57
4518 4991 6.765989 GCCCATGTGACATTATTACAACTAGA 59.234 38.462 0.00 0.00 0.00 2.43
4519 4992 7.445402 GCCCATGTGACATTATTACAACTAGAT 59.555 37.037 0.00 0.00 0.00 1.98
4520 4993 8.777413 CCCATGTGACATTATTACAACTAGATG 58.223 37.037 0.00 0.00 0.00 2.90
4521 4994 9.330063 CCATGTGACATTATTACAACTAGATGT 57.670 33.333 10.74 10.74 37.32 3.06
4571 5044 2.837291 TTGCCCACACCCAAGCAC 60.837 61.111 0.00 0.00 34.37 4.40
4591 5064 0.877743 GGTCACTTTCAGGCTTCTGC 59.122 55.000 0.00 0.00 38.36 4.26
4618 5091 1.354031 TGTGCTTGGCTCCTAATTCCA 59.646 47.619 0.00 0.00 0.00 3.53
4627 5105 4.079787 TGGCTCCTAATTCCAAGCTGTTAT 60.080 41.667 0.00 0.00 35.12 1.89
4655 5133 7.736893 AGTCTGTAGTCATTATATTCAACCCC 58.263 38.462 0.00 0.00 0.00 4.95
4770 5248 9.209175 TCTAAGTTTATTCTTCTGCTTTCTGAC 57.791 33.333 0.00 0.00 0.00 3.51
4956 5434 6.998074 TCAAACCATTGAGTTACAGAATCTGT 59.002 34.615 20.48 20.48 42.81 3.41
5001 5505 9.884465 GCATTTTACTACTCATATGATTCAACC 57.116 33.333 5.72 0.00 0.00 3.77
5023 5527 1.661341 GCTCATTGCTTCTGACGGAT 58.339 50.000 0.00 0.00 38.95 4.18
5033 5537 1.275666 TCTGACGGATGGTGAATGGT 58.724 50.000 0.00 0.00 0.00 3.55
5256 5760 5.921429 GAATATATCCAGCTCTCGTTTTGC 58.079 41.667 0.00 0.00 0.00 3.68
5300 5804 2.364632 TGTTTGGGCGTGGATATTCAG 58.635 47.619 0.00 0.00 0.00 3.02
5328 5832 6.371809 GGTTTTTCCCAATTGTTTTTCTCC 57.628 37.500 4.43 0.00 0.00 3.71
5487 5991 6.879458 GTCATGGAAAGAAGGTATGTGTTACT 59.121 38.462 0.00 0.00 0.00 2.24
5488 5992 6.878923 TCATGGAAAGAAGGTATGTGTTACTG 59.121 38.462 0.00 0.00 0.00 2.74
5489 5993 6.182507 TGGAAAGAAGGTATGTGTTACTGT 57.817 37.500 0.00 0.00 0.00 3.55
5490 5994 7.305813 TGGAAAGAAGGTATGTGTTACTGTA 57.694 36.000 0.00 0.00 0.00 2.74
5491 5995 7.156673 TGGAAAGAAGGTATGTGTTACTGTAC 58.843 38.462 0.00 0.00 0.00 2.90
5507 6011 5.941948 ACTGTACATGTTTTCTGCTAACC 57.058 39.130 2.30 0.00 0.00 2.85
5509 6013 5.470098 ACTGTACATGTTTTCTGCTAACCAG 59.530 40.000 2.30 0.00 43.17 4.00
5528 6032 6.017400 ACCAGCATATTTGTGAAGACTTTG 57.983 37.500 0.00 0.00 0.00 2.77
5542 6481 6.688813 GTGAAGACTTTGTTGTGAATTGACTC 59.311 38.462 0.00 0.00 0.00 3.36
5625 6571 7.558444 TGTAAAATAGAACCACAACTTCCAAGT 59.442 33.333 0.00 0.00 42.04 3.16
5634 6580 4.504864 CCACAACTTCCAAGTATGTCCTCA 60.505 45.833 0.00 0.00 38.57 3.86
5676 6622 2.292828 CCAGGACATGGTTGGAAGTT 57.707 50.000 0.00 0.00 44.91 2.66
5677 6623 2.597455 CCAGGACATGGTTGGAAGTTT 58.403 47.619 0.00 0.00 44.91 2.66
5678 6624 2.297033 CCAGGACATGGTTGGAAGTTTG 59.703 50.000 0.00 0.00 44.91 2.93
5679 6625 2.297033 CAGGACATGGTTGGAAGTTTGG 59.703 50.000 0.00 0.00 0.00 3.28
5680 6626 2.091333 AGGACATGGTTGGAAGTTTGGT 60.091 45.455 0.00 0.00 0.00 3.67
5681 6627 2.698274 GGACATGGTTGGAAGTTTGGTT 59.302 45.455 0.00 0.00 0.00 3.67
5682 6628 3.492482 GGACATGGTTGGAAGTTTGGTTG 60.492 47.826 0.00 0.00 0.00 3.77
5683 6629 2.433970 ACATGGTTGGAAGTTTGGTTGG 59.566 45.455 0.00 0.00 0.00 3.77
5711 6657 2.028020 GTGGCAGCTAACTACACTTCCT 60.028 50.000 0.00 0.00 32.85 3.36
5723 6669 9.522804 CTAACTACACTTCCTTTCATACTGATC 57.477 37.037 0.00 0.00 0.00 2.92
5724 6670 6.879400 ACTACACTTCCTTTCATACTGATCC 58.121 40.000 0.00 0.00 0.00 3.36
5751 6697 5.016173 TCATTCATCCCCGAAAGAAATTGT 58.984 37.500 0.00 0.00 0.00 2.71
5764 6710 6.589523 CGAAAGAAATTGTTAATGCCATTCCA 59.410 34.615 0.00 0.00 0.00 3.53
5778 6724 3.629398 GCCATTCCAGTTCATCTTGGTAG 59.371 47.826 0.00 0.00 0.00 3.18
5780 6726 4.637534 CCATTCCAGTTCATCTTGGTAGTG 59.362 45.833 0.00 0.00 0.00 2.74
5781 6727 5.491070 CATTCCAGTTCATCTTGGTAGTGA 58.509 41.667 0.00 0.00 0.00 3.41
5782 6728 4.808414 TCCAGTTCATCTTGGTAGTGAG 57.192 45.455 0.00 0.00 0.00 3.51
5783 6729 3.055819 TCCAGTTCATCTTGGTAGTGAGC 60.056 47.826 0.00 0.00 0.00 4.26
5839 6798 6.073314 TCCTAGTACTGTTCACTAACCACTT 58.927 40.000 5.39 0.00 34.49 3.16
5841 6800 6.208994 CCTAGTACTGTTCACTAACCACTTCT 59.791 42.308 5.39 0.00 34.49 2.85
5871 6830 1.000955 ACCTTGCTACCTGAACTGACG 59.999 52.381 0.00 0.00 0.00 4.35
5878 6837 0.464036 ACCTGAACTGACGACAAGCA 59.536 50.000 0.00 0.00 0.00 3.91
5879 6838 1.134521 ACCTGAACTGACGACAAGCAA 60.135 47.619 0.00 0.00 0.00 3.91
5880 6839 1.939934 CCTGAACTGACGACAAGCAAA 59.060 47.619 0.00 0.00 0.00 3.68
5881 6840 2.032549 CCTGAACTGACGACAAGCAAAG 60.033 50.000 0.00 0.00 0.00 2.77
5882 6841 1.330521 TGAACTGACGACAAGCAAAGC 59.669 47.619 0.00 0.00 0.00 3.51
5894 6853 2.704725 AGCAAAGCATTGTGGTAACG 57.295 45.000 3.31 0.00 38.85 3.18
5923 6883 0.755079 TGCCATTCCAGATCCTCGAG 59.245 55.000 5.13 5.13 0.00 4.04
6069 7029 2.887568 GTCCTGCATCGGCGACAG 60.888 66.667 13.76 16.25 45.35 3.51
6119 7079 2.352032 AAGGAGAAGGCCGAGGACG 61.352 63.158 0.00 0.00 39.43 4.79
6184 7147 4.116328 CCGCTGCTCGACGAGGAA 62.116 66.667 25.31 1.12 41.67 3.36
6196 7159 1.064357 GACGAGGAAGATGGAGACGAC 59.936 57.143 0.00 0.00 0.00 4.34
6252 7215 1.880675 AGGAGTATGATACGACAGCCG 59.119 52.381 0.00 0.00 45.44 5.52
6269 7233 5.050490 ACAGCCGTGCTAGATAAGTTTATG 58.950 41.667 0.00 0.00 36.40 1.90
6282 7254 4.663636 AAGTTTATGTACGCTGACAAGC 57.336 40.909 0.00 0.00 46.66 4.01
6446 7424 5.441709 TTTAGATGGAAAAACACGGGAAC 57.558 39.130 0.00 0.00 0.00 3.62
6482 7460 0.034896 CGGAGATTATTCCCCCGTGG 59.965 60.000 0.00 0.00 35.24 4.94
6699 7703 3.718210 GACGACCATGGAGCCCGTC 62.718 68.421 21.47 23.82 41.85 4.79
6700 7704 4.873129 CGACCATGGAGCCCGTCG 62.873 72.222 21.47 12.48 41.70 5.12
6701 7705 4.530857 GACCATGGAGCCCGTCGG 62.531 72.222 21.47 3.60 0.00 4.79
7047 8051 2.353803 CCCCGAGTTCAAGTTCTGGTAG 60.354 54.545 0.00 0.00 0.00 3.18
7048 8052 2.299297 CCCGAGTTCAAGTTCTGGTAGT 59.701 50.000 0.00 0.00 0.00 2.73
7049 8053 3.508793 CCCGAGTTCAAGTTCTGGTAGTA 59.491 47.826 0.00 0.00 0.00 1.82
7050 8054 4.159879 CCCGAGTTCAAGTTCTGGTAGTAT 59.840 45.833 0.00 0.00 0.00 2.12
7051 8055 5.359009 CCCGAGTTCAAGTTCTGGTAGTATA 59.641 44.000 0.00 0.00 0.00 1.47
7052 8056 6.040616 CCCGAGTTCAAGTTCTGGTAGTATAT 59.959 42.308 0.00 0.00 0.00 0.86
7053 8057 7.140048 CCGAGTTCAAGTTCTGGTAGTATATC 58.860 42.308 0.00 0.00 0.00 1.63
7055 8059 7.201794 CGAGTTCAAGTTCTGGTAGTATATCCA 60.202 40.741 0.00 0.00 0.00 3.41
7098 8102 0.909623 TCTCCGGTCCCCTTTGATTC 59.090 55.000 0.00 0.00 0.00 2.52
7138 8142 3.184783 GCTGAATTCGAGATCAGATGCAG 59.815 47.826 25.18 13.10 44.64 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 0.962489 CTCCCCATCGTTATCTCGCT 59.038 55.000 0.00 0.00 0.00 4.93
6 7 0.038159 GCCTCCCCATCGTTATCTCG 60.038 60.000 0.00 0.00 0.00 4.04
19 20 1.821332 CATCGCTTTCCAGCCTCCC 60.821 63.158 0.00 0.00 44.06 4.30
20 21 1.092345 GTCATCGCTTTCCAGCCTCC 61.092 60.000 0.00 0.00 44.06 4.30
38 39 0.319083 TTTCATGTAGTCCCACGCGT 59.681 50.000 5.58 5.58 0.00 6.01
40 41 1.130561 GCTTTTCATGTAGTCCCACGC 59.869 52.381 0.00 0.00 0.00 5.34
42 43 2.673368 CTCGCTTTTCATGTAGTCCCAC 59.327 50.000 0.00 0.00 0.00 4.61
72 73 2.738314 AGATTTTTGCCGCTCATTTTGC 59.262 40.909 0.00 0.00 0.00 3.68
86 87 1.092348 GACGGGCGGCTAAGATTTTT 58.908 50.000 9.56 0.00 0.00 1.94
124 125 9.915629 ATCCGCATGTTTTAAACAGTAAATTTA 57.084 25.926 15.83 0.00 45.95 1.40
127 128 9.515020 CATATCCGCATGTTTTAAACAGTAAAT 57.485 29.630 15.83 8.21 45.95 1.40
291 294 6.938507 AGATGGCAAATTTAATGAGCAAGAA 58.061 32.000 0.00 0.00 0.00 2.52
292 295 6.153170 TGAGATGGCAAATTTAATGAGCAAGA 59.847 34.615 0.00 0.00 0.00 3.02
336 340 1.284111 TACTAGCTGGGACGGAGGGA 61.284 60.000 0.85 0.00 36.31 4.20
337 341 1.108132 GTACTAGCTGGGACGGAGGG 61.108 65.000 0.00 0.00 36.31 4.30
338 342 0.395311 TGTACTAGCTGGGACGGAGG 60.395 60.000 8.06 0.00 36.31 4.30
339 343 1.471119 TTGTACTAGCTGGGACGGAG 58.529 55.000 8.06 0.00 36.31 4.63
340 344 1.822990 CTTTGTACTAGCTGGGACGGA 59.177 52.381 8.06 0.00 36.31 4.69
341 345 1.549170 ACTTTGTACTAGCTGGGACGG 59.451 52.381 8.06 3.39 38.10 4.79
342 346 2.993899 CAACTTTGTACTAGCTGGGACG 59.006 50.000 8.06 0.00 0.00 4.79
343 347 4.246458 CTCAACTTTGTACTAGCTGGGAC 58.754 47.826 5.28 5.28 0.00 4.46
344 348 3.901844 ACTCAACTTTGTACTAGCTGGGA 59.098 43.478 0.85 0.00 0.00 4.37
345 349 4.246458 GACTCAACTTTGTACTAGCTGGG 58.754 47.826 0.85 0.00 0.00 4.45
346 350 4.686554 GTGACTCAACTTTGTACTAGCTGG 59.313 45.833 0.00 0.00 0.00 4.85
347 351 5.533482 AGTGACTCAACTTTGTACTAGCTG 58.467 41.667 0.00 0.00 0.00 4.24
348 352 5.793030 AGTGACTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
349 353 8.535690 AATAAGTGACTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
355 359 8.837389 GTCCTAAAATAAGTGACTCAACTTTGT 58.163 33.333 0.00 0.00 40.77 2.83
356 360 8.009974 CGTCCTAAAATAAGTGACTCAACTTTG 58.990 37.037 0.00 0.00 40.77 2.77
357 361 7.172703 CCGTCCTAAAATAAGTGACTCAACTTT 59.827 37.037 0.00 0.00 40.77 2.66
358 362 6.649557 CCGTCCTAAAATAAGTGACTCAACTT 59.350 38.462 0.00 0.00 42.89 2.66
359 363 6.014840 TCCGTCCTAAAATAAGTGACTCAACT 60.015 38.462 0.00 0.00 0.00 3.16
360 364 6.161381 TCCGTCCTAAAATAAGTGACTCAAC 58.839 40.000 0.00 0.00 0.00 3.18
361 365 6.349243 TCCGTCCTAAAATAAGTGACTCAA 57.651 37.500 0.00 0.00 0.00 3.02
362 366 5.105473 CCTCCGTCCTAAAATAAGTGACTCA 60.105 44.000 0.00 0.00 0.00 3.41
363 367 5.126707 TCCTCCGTCCTAAAATAAGTGACTC 59.873 44.000 0.00 0.00 0.00 3.36
364 368 5.021458 TCCTCCGTCCTAAAATAAGTGACT 58.979 41.667 0.00 0.00 0.00 3.41
365 369 5.334724 TCCTCCGTCCTAAAATAAGTGAC 57.665 43.478 0.00 0.00 0.00 3.67
366 370 5.482878 ACTTCCTCCGTCCTAAAATAAGTGA 59.517 40.000 0.00 0.00 0.00 3.41
367 371 5.731591 ACTTCCTCCGTCCTAAAATAAGTG 58.268 41.667 0.00 0.00 0.00 3.16
368 372 7.672122 ATACTTCCTCCGTCCTAAAATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
403 407 6.203723 GTCAGATAGGTGACCATAGCAAAATC 59.796 42.308 3.63 0.00 40.96 2.17
404 408 6.058183 GTCAGATAGGTGACCATAGCAAAAT 58.942 40.000 3.63 0.00 40.96 1.82
436 440 7.859325 TTTAGAATGCTGATAACTACCCAAC 57.141 36.000 0.00 0.00 0.00 3.77
439 443 9.780186 AGTATTTTAGAATGCTGATAACTACCC 57.220 33.333 0.00 0.00 36.92 3.69
461 465 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
462 466 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
463 467 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
464 468 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
465 469 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
466 470 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
467 471 7.441458 CCAAAGACTTATATTTAGGAACGGAGG 59.559 40.741 0.00 0.00 0.00 4.30
468 472 8.202137 TCCAAAGACTTATATTTAGGAACGGAG 58.798 37.037 0.00 0.00 0.00 4.63
469 473 8.081517 TCCAAAGACTTATATTTAGGAACGGA 57.918 34.615 0.00 0.00 0.00 4.69
470 474 8.202137 TCTCCAAAGACTTATATTTAGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
471 475 9.250624 CTCTCCAAAGACTTATATTTAGGAACG 57.749 37.037 0.00 0.00 0.00 3.95
500 504 3.310193 TCCGTATGTGGTCCATAATGGA 58.690 45.455 0.00 1.41 45.98 3.41
501 505 3.664107 CTCCGTATGTGGTCCATAATGG 58.336 50.000 0.00 0.00 37.77 3.16
502 506 3.067106 GCTCCGTATGTGGTCCATAATG 58.933 50.000 0.00 0.00 37.77 1.90
503 507 2.703536 TGCTCCGTATGTGGTCCATAAT 59.296 45.455 0.00 0.00 37.77 1.28
504 508 2.112190 TGCTCCGTATGTGGTCCATAA 58.888 47.619 0.00 0.00 37.77 1.90
505 509 1.783071 TGCTCCGTATGTGGTCCATA 58.217 50.000 0.00 0.00 34.86 2.74
506 510 0.908910 TTGCTCCGTATGTGGTCCAT 59.091 50.000 0.00 0.00 37.58 3.41
507 511 0.687920 TTTGCTCCGTATGTGGTCCA 59.312 50.000 0.00 0.00 0.00 4.02
508 512 1.816074 TTTTGCTCCGTATGTGGTCC 58.184 50.000 0.00 0.00 0.00 4.46
509 513 3.006940 TCATTTTGCTCCGTATGTGGTC 58.993 45.455 0.00 0.00 0.00 4.02
510 514 3.009723 CTCATTTTGCTCCGTATGTGGT 58.990 45.455 0.00 0.00 0.00 4.16
511 515 3.009723 ACTCATTTTGCTCCGTATGTGG 58.990 45.455 0.00 0.00 0.00 4.17
512 516 3.684305 TCACTCATTTTGCTCCGTATGTG 59.316 43.478 0.00 0.00 0.00 3.21
513 517 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
514 518 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
515 519 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
516 520 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
517 521 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
518 522 5.998454 ATAGATTCACTCATTTTGCTCCG 57.002 39.130 0.00 0.00 0.00 4.63
519 523 7.930865 AGAGTATAGATTCACTCATTTTGCTCC 59.069 37.037 4.70 0.00 42.99 4.70
520 524 8.885494 AGAGTATAGATTCACTCATTTTGCTC 57.115 34.615 4.70 0.00 42.99 4.26
549 553 9.565090 ACAACATACAGATGTATCTAAATGCAT 57.435 29.630 2.47 0.00 45.93 3.96
550 554 8.962884 ACAACATACAGATGTATCTAAATGCA 57.037 30.769 2.47 0.00 45.93 3.96
551 555 8.499162 GGACAACATACAGATGTATCTAAATGC 58.501 37.037 2.47 0.00 45.93 3.56
552 556 9.546428 TGGACAACATACAGATGTATCTAAATG 57.454 33.333 2.47 11.27 45.93 2.32
556 560 9.588096 ACTATGGACAACATACAGATGTATCTA 57.412 33.333 2.47 0.00 45.93 1.98
557 561 8.363390 CACTATGGACAACATACAGATGTATCT 58.637 37.037 2.47 0.00 45.93 1.98
558 562 8.360390 TCACTATGGACAACATACAGATGTATC 58.640 37.037 2.47 0.00 45.93 2.24
559 563 8.250143 TCACTATGGACAACATACAGATGTAT 57.750 34.615 0.00 0.00 45.93 2.29
560 564 7.654022 TCACTATGGACAACATACAGATGTA 57.346 36.000 0.00 0.00 45.93 2.29
562 566 7.848223 TTTCACTATGGACAACATACAGATG 57.152 36.000 0.00 0.00 41.03 2.90
563 567 9.113838 GATTTTCACTATGGACAACATACAGAT 57.886 33.333 0.00 0.00 41.03 2.90
564 568 8.321353 AGATTTTCACTATGGACAACATACAGA 58.679 33.333 0.00 0.00 41.03 3.41
565 569 8.498054 AGATTTTCACTATGGACAACATACAG 57.502 34.615 0.00 0.00 41.03 2.74
566 570 8.321353 AGAGATTTTCACTATGGACAACATACA 58.679 33.333 0.00 0.00 41.03 2.29
567 571 8.607459 CAGAGATTTTCACTATGGACAACATAC 58.393 37.037 0.00 0.00 41.03 2.39
568 572 7.280876 GCAGAGATTTTCACTATGGACAACATA 59.719 37.037 0.00 0.00 41.03 2.29
569 573 6.094603 GCAGAGATTTTCACTATGGACAACAT 59.905 38.462 0.00 0.00 43.68 2.71
570 574 5.412594 GCAGAGATTTTCACTATGGACAACA 59.587 40.000 0.00 0.00 0.00 3.33
571 575 5.412594 TGCAGAGATTTTCACTATGGACAAC 59.587 40.000 0.00 0.00 0.00 3.32
572 576 5.559770 TGCAGAGATTTTCACTATGGACAA 58.440 37.500 0.00 0.00 0.00 3.18
573 577 5.164620 TGCAGAGATTTTCACTATGGACA 57.835 39.130 0.00 0.00 0.00 4.02
574 578 6.372659 TCTTTGCAGAGATTTTCACTATGGAC 59.627 38.462 2.15 0.00 27.94 4.02
575 579 6.372659 GTCTTTGCAGAGATTTTCACTATGGA 59.627 38.462 10.53 0.00 0.00 3.41
576 580 6.373774 AGTCTTTGCAGAGATTTTCACTATGG 59.626 38.462 10.53 0.00 0.00 2.74
577 581 7.375106 AGTCTTTGCAGAGATTTTCACTATG 57.625 36.000 10.53 0.00 0.00 2.23
578 582 7.992754 AAGTCTTTGCAGAGATTTTCACTAT 57.007 32.000 10.53 0.00 0.00 2.12
579 583 7.931407 TGTAAGTCTTTGCAGAGATTTTCACTA 59.069 33.333 18.16 0.00 29.76 2.74
580 584 6.767902 TGTAAGTCTTTGCAGAGATTTTCACT 59.232 34.615 18.16 4.53 29.76 3.41
581 585 6.959361 TGTAAGTCTTTGCAGAGATTTTCAC 58.041 36.000 18.16 12.52 29.76 3.18
582 586 7.750229 ATGTAAGTCTTTGCAGAGATTTTCA 57.250 32.000 18.16 18.47 32.32 2.69
585 589 9.507329 TCTAAATGTAAGTCTTTGCAGAGATTT 57.493 29.630 17.30 17.30 32.32 2.17
586 590 9.507329 TTCTAAATGTAAGTCTTTGCAGAGATT 57.493 29.630 10.53 3.04 32.32 2.40
587 591 9.507329 TTTCTAAATGTAAGTCTTTGCAGAGAT 57.493 29.630 10.53 0.00 32.32 2.75
588 592 8.774586 GTTTCTAAATGTAAGTCTTTGCAGAGA 58.225 33.333 2.15 2.15 32.32 3.10
589 593 8.559536 TGTTTCTAAATGTAAGTCTTTGCAGAG 58.440 33.333 0.00 0.00 32.32 3.35
590 594 8.445275 TGTTTCTAAATGTAAGTCTTTGCAGA 57.555 30.769 0.00 0.00 32.32 4.26
591 595 8.559536 TCTGTTTCTAAATGTAAGTCTTTGCAG 58.440 33.333 0.00 0.00 32.32 4.41
592 596 8.445275 TCTGTTTCTAAATGTAAGTCTTTGCA 57.555 30.769 0.00 0.00 33.36 4.08
593 597 8.017946 CCTCTGTTTCTAAATGTAAGTCTTTGC 58.982 37.037 0.00 0.00 0.00 3.68
594 598 8.507249 CCCTCTGTTTCTAAATGTAAGTCTTTG 58.493 37.037 0.00 0.00 0.00 2.77
595 599 8.437575 TCCCTCTGTTTCTAAATGTAAGTCTTT 58.562 33.333 0.00 0.00 0.00 2.52
596 600 7.974504 TCCCTCTGTTTCTAAATGTAAGTCTT 58.025 34.615 0.00 0.00 0.00 3.01
597 601 7.235812 ACTCCCTCTGTTTCTAAATGTAAGTCT 59.764 37.037 0.00 0.00 0.00 3.24
598 602 7.387643 ACTCCCTCTGTTTCTAAATGTAAGTC 58.612 38.462 0.00 0.00 0.00 3.01
599 603 7.317722 ACTCCCTCTGTTTCTAAATGTAAGT 57.682 36.000 0.00 0.00 0.00 2.24
603 607 8.993424 ACATATACTCCCTCTGTTTCTAAATGT 58.007 33.333 0.00 0.00 0.00 2.71
604 608 9.838339 AACATATACTCCCTCTGTTTCTAAATG 57.162 33.333 0.00 0.00 0.00 2.32
607 611 8.921205 GGTAACATATACTCCCTCTGTTTCTAA 58.079 37.037 0.00 0.00 32.66 2.10
608 612 8.287350 AGGTAACATATACTCCCTCTGTTTCTA 58.713 37.037 0.00 0.00 41.41 2.10
609 613 7.133483 AGGTAACATATACTCCCTCTGTTTCT 58.867 38.462 0.00 0.00 41.41 2.52
610 614 7.362802 AGGTAACATATACTCCCTCTGTTTC 57.637 40.000 0.00 0.00 41.41 2.78
611 615 8.066247 AGTAGGTAACATATACTCCCTCTGTTT 58.934 37.037 0.00 0.00 41.41 2.83
612 616 7.593653 AGTAGGTAACATATACTCCCTCTGTT 58.406 38.462 0.00 0.00 41.41 3.16
613 617 7.073981 AGAGTAGGTAACATATACTCCCTCTGT 59.926 40.741 7.73 0.00 44.19 3.41
614 618 7.392113 CAGAGTAGGTAACATATACTCCCTCTG 59.608 44.444 7.73 0.00 44.19 3.35
615 619 7.073981 ACAGAGTAGGTAACATATACTCCCTCT 59.926 40.741 7.73 0.00 44.19 3.69
616 620 7.232910 ACAGAGTAGGTAACATATACTCCCTC 58.767 42.308 7.73 0.00 44.19 4.30
617 621 7.164233 ACAGAGTAGGTAACATATACTCCCT 57.836 40.000 7.73 0.00 44.19 4.20
618 622 7.836479 AACAGAGTAGGTAACATATACTCCC 57.164 40.000 7.73 0.00 44.19 4.30
619 623 8.910944 TGAAACAGAGTAGGTAACATATACTCC 58.089 37.037 7.73 0.00 44.19 3.85
635 639 9.010029 ACCACGATAAAAATTATGAAACAGAGT 57.990 29.630 0.00 0.00 0.00 3.24
704 723 2.807247 GTGGTGCCACAGACCTTTT 58.193 52.632 15.81 0.00 45.53 2.27
705 724 4.579127 GTGGTGCCACAGACCTTT 57.421 55.556 15.81 0.00 45.53 3.11
757 776 2.094390 GGCACGCGATAGTAATATGGGA 60.094 50.000 15.93 0.00 39.35 4.37
776 795 1.131638 TATGGGACTGAGATGGTGGC 58.868 55.000 0.00 0.00 0.00 5.01
888 908 4.773149 AGGGCGTGGGTTATGAAATTTTTA 59.227 37.500 0.00 0.00 0.00 1.52
889 909 3.580895 AGGGCGTGGGTTATGAAATTTTT 59.419 39.130 0.00 0.00 0.00 1.94
1027 1047 3.319198 GAGCTTCCGGTGTGGGGA 61.319 66.667 0.00 0.00 38.76 4.81
1031 1051 0.173708 GTAGAGGAGCTTCCGGTGTG 59.826 60.000 0.00 0.00 42.75 3.82
1032 1052 0.039911 AGTAGAGGAGCTTCCGGTGT 59.960 55.000 0.00 0.00 42.75 4.16
1033 1053 0.741915 GAGTAGAGGAGCTTCCGGTG 59.258 60.000 0.00 0.00 42.75 4.94
1048 1068 1.477558 GGGAGACGGGATTACGGAGTA 60.478 57.143 0.00 0.00 45.11 2.59
1062 1082 3.282885 GGTGGATTTTGAGATGGGAGAC 58.717 50.000 0.00 0.00 0.00 3.36
1070 1090 0.774908 AACCGGGGTGGATTTTGAGA 59.225 50.000 6.32 0.00 42.00 3.27
1087 1107 0.903236 AGGAAGTAGAAGGGCGGAAC 59.097 55.000 0.00 0.00 0.00 3.62
1103 1129 0.251386 AGACGAGCTGTGAGGAAGGA 60.251 55.000 0.00 0.00 0.00 3.36
1106 1132 1.876664 CGAGACGAGCTGTGAGGAA 59.123 57.895 0.00 0.00 0.00 3.36
1270 1296 0.320073 TGTAAGCGGAAGGAACGGTG 60.320 55.000 0.00 0.00 42.28 4.94
1539 1583 4.971924 AGGCTATAACTGAAGATGGAACCT 59.028 41.667 0.00 0.00 0.00 3.50
1562 1606 0.108945 CTCTCACGCATGCTCTGACA 60.109 55.000 17.13 3.28 0.00 3.58
1565 1609 1.209998 CATCTCTCACGCATGCTCTG 58.790 55.000 17.13 10.87 0.00 3.35
1604 1656 0.680601 TGTTGATGGCATGACCGCAT 60.681 50.000 3.81 0.00 43.94 4.73
1605 1657 0.680601 ATGTTGATGGCATGACCGCA 60.681 50.000 3.81 0.00 43.94 5.69
1606 1658 0.457035 AATGTTGATGGCATGACCGC 59.543 50.000 3.81 0.00 43.94 5.68
1607 1659 2.945008 ACTAATGTTGATGGCATGACCG 59.055 45.455 3.81 0.00 43.94 4.79
1608 1660 4.989279 AACTAATGTTGATGGCATGACC 57.011 40.909 3.81 0.00 34.71 4.02
1609 1661 5.713025 ACAAACTAATGTTGATGGCATGAC 58.287 37.500 3.81 4.03 36.39 3.06
1610 1662 5.981088 ACAAACTAATGTTGATGGCATGA 57.019 34.783 3.81 0.00 36.39 3.07
1626 1678 2.632987 AAGGTGGCGTCTAACAAACT 57.367 45.000 0.00 0.00 0.00 2.66
2403 2460 4.469227 TGCAAAACCAACCAGCCATAATAT 59.531 37.500 0.00 0.00 0.00 1.28
2438 2495 9.507329 AGAGAGAAACATAAACATTAAGCAAGA 57.493 29.630 0.00 0.00 0.00 3.02
2487 2545 5.414454 CACAAGGCTAAACTATTGGCTAACA 59.586 40.000 0.00 0.00 42.22 2.41
2587 2845 7.123397 ACCACACATGTTAACAATTATGCCATA 59.877 33.333 13.23 0.00 0.00 2.74
2642 2900 7.202011 GGGTAAGTCGGATAATATATGAGCCAT 60.202 40.741 5.20 0.00 0.00 4.40
2756 3014 7.289317 AGTGGCAAGGAAATCATATGAAATGAT 59.711 33.333 9.99 0.00 40.20 2.45
2757 3015 6.608405 AGTGGCAAGGAAATCATATGAAATGA 59.392 34.615 9.99 0.00 0.00 2.57
2819 3077 1.839424 AGGGAATGCGGAAGGAAAAG 58.161 50.000 0.00 0.00 32.68 2.27
2975 3243 8.214721 AGTCCTTTGAACAAGAAAGACTAAAG 57.785 34.615 0.00 0.00 33.01 1.85
2993 3261 8.814038 ATGCAATTTGAGTAAGATAGTCCTTT 57.186 30.769 0.00 0.00 0.00 3.11
3036 3304 9.612066 ACATTTTCAACAAATAAAAGACCACAT 57.388 25.926 0.00 0.00 0.00 3.21
3037 3305 9.092876 GACATTTTCAACAAATAAAAGACCACA 57.907 29.630 0.00 0.00 0.00 4.17
3234 3502 3.507162 AATCTGTGTGTGGTCAATCCA 57.493 42.857 0.00 0.00 45.01 3.41
3247 3515 8.820933 CATCAGTATACACCTTACAAATCTGTG 58.179 37.037 5.50 0.00 36.96 3.66
3257 3525 5.602561 AGCATGGACATCAGTATACACCTTA 59.397 40.000 5.50 0.00 0.00 2.69
3259 3527 3.969976 AGCATGGACATCAGTATACACCT 59.030 43.478 5.50 0.00 0.00 4.00
3260 3528 4.342862 AGCATGGACATCAGTATACACC 57.657 45.455 5.50 0.00 0.00 4.16
3270 3538 6.919662 CCACATATGTAAAAAGCATGGACATC 59.080 38.462 8.32 0.00 33.05 3.06
3286 3554 3.939740 ATGAGCAGGTTCCACATATGT 57.060 42.857 1.41 1.41 0.00 2.29
3338 3608 6.080682 TCTCTACTGAATCAGCAGGGATATT 58.919 40.000 8.93 0.00 40.20 1.28
3500 3770 7.209475 ACTGGATGTTCAACAATAAAAACTGG 58.791 34.615 0.00 0.00 0.00 4.00
3526 3796 4.789807 AGAGATGCTACAATTTCATGCCT 58.210 39.130 0.00 0.00 0.00 4.75
3567 3837 1.958288 AGAGGCCAGGCTAAGAAGAA 58.042 50.000 12.43 0.00 0.00 2.52
3568 3838 1.556911 CAAGAGGCCAGGCTAAGAAGA 59.443 52.381 12.43 0.00 0.00 2.87
3569 3839 1.556911 TCAAGAGGCCAGGCTAAGAAG 59.443 52.381 12.43 0.00 0.00 2.85
3570 3840 1.656587 TCAAGAGGCCAGGCTAAGAA 58.343 50.000 12.43 0.00 0.00 2.52
3581 3851 3.648339 TCAAACAAGCAATCAAGAGGC 57.352 42.857 0.00 0.00 0.00 4.70
3645 3915 7.994425 TCCAGAACTTATTGTTTGCTCAATA 57.006 32.000 5.81 5.81 39.30 1.90
3664 3934 4.931601 CAGACGAACATTTCTTGATCCAGA 59.068 41.667 0.00 0.00 0.00 3.86
3682 3952 3.624410 TCATCAGATTCATTTGGCAGACG 59.376 43.478 0.00 0.00 0.00 4.18
3740 4010 5.753721 ATCTTCAAGACCAGAAACTAGCT 57.246 39.130 0.00 0.00 0.00 3.32
3869 4139 3.577848 AGCAAAACAATGTTGGCATCCTA 59.422 39.130 20.11 0.00 33.50 2.94
3896 4166 2.643995 TGTGGATCATGTATGGGCAG 57.356 50.000 0.00 0.00 0.00 4.85
3915 4185 4.098894 AGGGTGATTTCAGAATGCCAATT 58.901 39.130 0.00 0.00 34.76 2.32
3922 4192 8.568617 AGGTAATAGTAGGGTGATTTCAGAAT 57.431 34.615 0.00 0.00 0.00 2.40
3927 4197 7.170489 GCGTTTAGGTAATAGTAGGGTGATTTC 59.830 40.741 0.00 0.00 0.00 2.17
3962 4232 6.515043 AAGAACAAAAATCGCACAATTCTG 57.485 33.333 0.00 0.00 0.00 3.02
3970 4240 5.901552 AGGAGAAAAAGAACAAAAATCGCA 58.098 33.333 0.00 0.00 0.00 5.10
4141 4611 7.803279 TTCAGTCTAGATATAAGTGCGAGAA 57.197 36.000 0.00 0.00 0.00 2.87
4142 4612 7.661847 TCATTCAGTCTAGATATAAGTGCGAGA 59.338 37.037 0.00 0.00 0.00 4.04
4161 4631 7.444487 TGAAAGATCTCCAAGCATATCATTCAG 59.556 37.037 0.00 0.00 33.54 3.02
4162 4632 7.284820 TGAAAGATCTCCAAGCATATCATTCA 58.715 34.615 0.00 0.00 35.12 2.57
4193 4663 8.181573 GGATCAACTACGAAATGCAAATAGAAA 58.818 33.333 0.00 0.00 0.00 2.52
4212 4682 4.394729 TCTGGTTAACAAGGTGGATCAAC 58.605 43.478 10.18 0.00 0.00 3.18
4220 4690 4.348168 ACTGAGTGATCTGGTTAACAAGGT 59.652 41.667 10.18 2.25 0.00 3.50
4230 4700 5.704515 ACAATGAAGAAACTGAGTGATCTGG 59.295 40.000 2.41 0.00 0.00 3.86
4320 4790 9.269453 AGTTACTGTAAGACAATTTTCAGTACC 57.731 33.333 0.00 0.00 39.25 3.34
4386 4856 6.096846 ACTTCCAGTGTAAAAATATCCATGCC 59.903 38.462 0.00 0.00 0.00 4.40
4391 4861 8.506168 TGATGACTTCCAGTGTAAAAATATCC 57.494 34.615 0.00 0.00 0.00 2.59
4399 4869 7.479980 CAAAGTTTTGATGACTTCCAGTGTAA 58.520 34.615 0.00 0.00 40.55 2.41
4421 4891 6.761242 ACATCAGTATATAGCTCAAACGCAAA 59.239 34.615 0.00 0.00 0.00 3.68
4439 4909 6.112734 TGAAAATGATAAGGCGTACATCAGT 58.887 36.000 8.88 4.57 32.51 3.41
4440 4910 6.258727 ACTGAAAATGATAAGGCGTACATCAG 59.741 38.462 8.88 0.00 32.51 2.90
4441 4911 6.112734 ACTGAAAATGATAAGGCGTACATCA 58.887 36.000 6.19 6.19 33.47 3.07
4442 4912 6.604735 ACTGAAAATGATAAGGCGTACATC 57.395 37.500 0.00 0.00 0.00 3.06
4443 4913 6.374333 ACAACTGAAAATGATAAGGCGTACAT 59.626 34.615 0.00 0.00 0.00 2.29
4444 4914 5.703592 ACAACTGAAAATGATAAGGCGTACA 59.296 36.000 0.00 0.00 0.00 2.90
4445 4915 6.021596 CACAACTGAAAATGATAAGGCGTAC 58.978 40.000 0.00 0.00 0.00 3.67
4447 4917 4.518970 ACACAACTGAAAATGATAAGGCGT 59.481 37.500 0.00 0.00 0.00 5.68
4448 4918 5.046910 ACACAACTGAAAATGATAAGGCG 57.953 39.130 0.00 0.00 0.00 5.52
4454 4926 8.853077 TTCTCTCATACACAACTGAAAATGAT 57.147 30.769 0.00 0.00 0.00 2.45
4457 4929 8.352942 GGTTTTCTCTCATACACAACTGAAAAT 58.647 33.333 0.00 0.00 35.56 1.82
4532 5005 9.162764 GGCAACGAATGTAATAATCCAGTATAT 57.837 33.333 0.00 0.00 0.00 0.86
4533 5006 7.604927 GGGCAACGAATGTAATAATCCAGTATA 59.395 37.037 0.00 0.00 37.60 1.47
4534 5007 6.430000 GGGCAACGAATGTAATAATCCAGTAT 59.570 38.462 0.00 0.00 37.60 2.12
4571 5044 1.151668 CAGAAGCCTGAAAGTGACCG 58.848 55.000 0.00 0.00 43.02 4.79
4591 5064 0.666913 GGAGCCAAGCACATGCATAG 59.333 55.000 6.64 0.00 45.16 2.23
4618 5091 7.889873 ATGACTACAGACTAGATAACAGCTT 57.110 36.000 0.00 0.00 0.00 3.74
4655 5133 4.898320 TGTGCTATCCATTAGTATGCCAG 58.102 43.478 0.00 0.00 0.00 4.85
4956 5434 6.573664 AATGCAAGTATGTAACTGCAAAGA 57.426 33.333 0.00 0.00 41.94 2.52
5019 5523 2.549754 GCAATAGACCATTCACCATCCG 59.450 50.000 0.00 0.00 0.00 4.18
5023 5527 2.308570 ACCTGCAATAGACCATTCACCA 59.691 45.455 0.00 0.00 0.00 4.17
5256 5760 7.754924 ACAACCAATAGAAAATGAAAGTATGCG 59.245 33.333 0.00 0.00 0.00 4.73
5328 5832 5.645497 AGCTAAAGCAAGTCAAGGATAACTG 59.355 40.000 4.54 0.00 45.16 3.16
5437 5941 5.999044 ACTGATAAACTCTCCTGCATGATT 58.001 37.500 0.00 0.00 0.00 2.57
5487 5991 5.940192 CTGGTTAGCAGAAAACATGTACA 57.060 39.130 5.36 0.00 0.00 2.90
5507 6011 6.919662 ACAACAAAGTCTTCACAAATATGCTG 59.080 34.615 0.00 0.00 0.00 4.41
5509 6013 6.917477 TCACAACAAAGTCTTCACAAATATGC 59.083 34.615 0.00 0.00 0.00 3.14
5514 6018 7.328249 GTCAATTCACAACAAAGTCTTCACAAA 59.672 33.333 0.00 0.00 0.00 2.83
5528 6032 3.255888 GGAAAGGGGAGTCAATTCACAAC 59.744 47.826 0.00 0.00 0.00 3.32
5542 6481 3.447229 ACGCTTATTTTCATGGAAAGGGG 59.553 43.478 5.22 8.41 35.21 4.79
5625 6571 3.365472 TGCAAGAGTAGCTGAGGACATA 58.635 45.455 0.00 0.00 0.00 2.29
5668 6614 4.773149 ACTGTAAACCAACCAAACTTCCAA 59.227 37.500 0.00 0.00 0.00 3.53
5669 6615 4.158764 CACTGTAAACCAACCAAACTTCCA 59.841 41.667 0.00 0.00 0.00 3.53
5670 6616 4.440940 CCACTGTAAACCAACCAAACTTCC 60.441 45.833 0.00 0.00 0.00 3.46
5671 6617 4.678622 CCACTGTAAACCAACCAAACTTC 58.321 43.478 0.00 0.00 0.00 3.01
5672 6618 3.118920 GCCACTGTAAACCAACCAAACTT 60.119 43.478 0.00 0.00 0.00 2.66
5673 6619 2.429250 GCCACTGTAAACCAACCAAACT 59.571 45.455 0.00 0.00 0.00 2.66
5674 6620 2.166664 TGCCACTGTAAACCAACCAAAC 59.833 45.455 0.00 0.00 0.00 2.93
5675 6621 2.428890 CTGCCACTGTAAACCAACCAAA 59.571 45.455 0.00 0.00 0.00 3.28
5676 6622 2.028130 CTGCCACTGTAAACCAACCAA 58.972 47.619 0.00 0.00 0.00 3.67
5677 6623 1.686355 CTGCCACTGTAAACCAACCA 58.314 50.000 0.00 0.00 0.00 3.67
5678 6624 0.313987 GCTGCCACTGTAAACCAACC 59.686 55.000 0.00 0.00 0.00 3.77
5679 6625 1.318576 AGCTGCCACTGTAAACCAAC 58.681 50.000 0.00 0.00 0.00 3.77
5680 6626 2.882137 GTTAGCTGCCACTGTAAACCAA 59.118 45.455 0.00 0.00 0.00 3.67
5681 6627 2.105821 AGTTAGCTGCCACTGTAAACCA 59.894 45.455 0.00 0.00 0.00 3.67
5682 6628 2.779506 AGTTAGCTGCCACTGTAAACC 58.220 47.619 0.00 0.00 0.00 3.27
5683 6629 4.151867 GTGTAGTTAGCTGCCACTGTAAAC 59.848 45.833 11.36 3.65 0.00 2.01
5723 6669 3.953612 TCTTTCGGGGATGAATGAAATGG 59.046 43.478 0.00 0.00 31.44 3.16
5724 6670 5.581126 TTCTTTCGGGGATGAATGAAATG 57.419 39.130 3.29 0.00 38.38 2.32
5751 6697 5.127519 CCAAGATGAACTGGAATGGCATTAA 59.872 40.000 13.65 3.80 0.00 1.40
5764 6710 4.081752 CAGAGCTCACTACCAAGATGAACT 60.082 45.833 17.77 0.00 0.00 3.01
5839 6798 1.735360 GCAAGGTGCAGCAAACAGA 59.265 52.632 19.63 0.00 44.26 3.41
5871 6830 2.514205 ACCACAATGCTTTGCTTGTC 57.486 45.000 11.96 0.00 36.22 3.18
5878 6837 0.386731 GCGCGTTACCACAATGCTTT 60.387 50.000 8.43 0.00 0.00 3.51
5879 6838 1.209127 GCGCGTTACCACAATGCTT 59.791 52.632 8.43 0.00 0.00 3.91
5880 6839 1.671054 AGCGCGTTACCACAATGCT 60.671 52.632 8.43 0.00 0.00 3.79
5881 6840 1.511887 CAGCGCGTTACCACAATGC 60.512 57.895 8.43 0.00 0.00 3.56
5882 6841 0.237235 AACAGCGCGTTACCACAATG 59.763 50.000 8.43 0.45 35.52 2.82
5894 6853 1.226773 GGAATGGCATGAACAGCGC 60.227 57.895 0.00 0.00 0.00 5.92
5980 6940 1.140407 CGCATTCGTCTCGGAACTCC 61.140 60.000 0.00 0.00 0.00 3.85
6181 7144 0.809385 TGTCGTCGTCTCCATCTTCC 59.191 55.000 0.00 0.00 0.00 3.46
6184 7147 1.751437 TCATGTCGTCGTCTCCATCT 58.249 50.000 0.00 0.00 0.00 2.90
6196 7159 7.111179 CGATGCTAGAAATCAAAAATCATGTCG 59.889 37.037 0.00 0.00 0.00 4.35
6252 7215 6.916387 TCAGCGTACATAAACTTATCTAGCAC 59.084 38.462 0.00 0.00 0.00 4.40
6282 7254 1.014564 GGGAGAAGGAAGCAACGACG 61.015 60.000 0.00 0.00 0.00 5.12
6446 7424 1.004277 TCCGTGGAATTTCTGGGAAGG 59.996 52.381 0.00 0.00 0.00 3.46
6614 7600 4.678743 GTGGGGTGGGCTGGGTTC 62.679 72.222 0.00 0.00 0.00 3.62
6644 7641 1.543690 GGATTTCTGGGGGATGGGG 59.456 63.158 0.00 0.00 0.00 4.96
7047 8051 4.502962 GGCAGCAGAAGAGATGGATATAC 58.497 47.826 0.00 0.00 0.00 1.47
7048 8052 3.517100 GGGCAGCAGAAGAGATGGATATA 59.483 47.826 0.00 0.00 0.00 0.86
7049 8053 2.305343 GGGCAGCAGAAGAGATGGATAT 59.695 50.000 0.00 0.00 0.00 1.63
7050 8054 1.696336 GGGCAGCAGAAGAGATGGATA 59.304 52.381 0.00 0.00 0.00 2.59
7051 8055 0.473326 GGGCAGCAGAAGAGATGGAT 59.527 55.000 0.00 0.00 0.00 3.41
7052 8056 1.630126 GGGGCAGCAGAAGAGATGGA 61.630 60.000 0.00 0.00 0.00 3.41
7053 8057 1.153005 GGGGCAGCAGAAGAGATGG 60.153 63.158 0.00 0.00 0.00 3.51
7055 8059 0.918310 AAGGGGGCAGCAGAAGAGAT 60.918 55.000 0.00 0.00 0.00 2.75
7098 8102 0.984109 GCACCAATTTCACGCAATCG 59.016 50.000 0.00 0.00 42.43 3.34
7138 8142 1.104630 CTGGGTCTCGAGAAGGGTAC 58.895 60.000 18.55 3.70 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.