Multiple sequence alignment - TraesCS7D01G403000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G403000 chr7D 100.000 6443 0 0 1 6443 520385472 520391914 0.000000e+00 11899.0
1 TraesCS7D01G403000 chr7A 95.579 3099 87 18 1894 4950 596685668 596688758 0.000000e+00 4918.0
2 TraesCS7D01G403000 chr7A 92.869 1823 95 22 1 1800 596683859 596685669 0.000000e+00 2614.0
3 TraesCS7D01G403000 chr7A 91.297 563 28 6 5304 5851 596688757 596689313 0.000000e+00 749.0
4 TraesCS7D01G403000 chr7A 85.392 664 61 18 3079 3732 651433101 651433738 0.000000e+00 656.0
5 TraesCS7D01G403000 chr7A 91.057 246 21 1 5059 5304 273006120 273006364 1.340000e-86 331.0
6 TraesCS7D01G403000 chr7A 81.308 428 53 19 5968 6383 596689331 596689743 8.060000e-84 322.0
7 TraesCS7D01G403000 chr7A 83.019 106 14 2 4952 5057 315296362 315296261 6.880000e-15 93.5
8 TraesCS7D01G403000 chr7A 80.247 81 16 0 5856 5936 19262202 19262282 1.940000e-05 62.1
9 TraesCS7D01G403000 chr7B 93.837 3083 128 25 1963 5004 553443212 553446273 0.000000e+00 4584.0
10 TraesCS7D01G403000 chr7B 89.140 2035 121 41 1 1962 553440672 553442679 0.000000e+00 2442.0
11 TraesCS7D01G403000 chr7B 90.702 570 35 10 5295 5857 553446290 553446848 0.000000e+00 743.0
12 TraesCS7D01G403000 chr3D 89.224 2988 199 61 2001 4922 191097270 191100200 0.000000e+00 3620.0
13 TraesCS7D01G403000 chr3D 91.400 907 57 14 830 1719 191095294 191096196 0.000000e+00 1223.0
14 TraesCS7D01G403000 chr3D 90.000 100 5 3 4953 5051 167385257 167385162 2.440000e-24 124.0
15 TraesCS7D01G403000 chr3B 88.804 3001 205 63 2001 4922 277031714 277034662 0.000000e+00 3559.0
16 TraesCS7D01G403000 chr3B 92.967 782 50 3 941 1719 277029330 277030109 0.000000e+00 1134.0
17 TraesCS7D01G403000 chr3B 87.043 656 52 18 3079 3732 755228339 755228963 0.000000e+00 710.0
18 TraesCS7D01G403000 chr3B 90.265 226 20 2 2440 2665 96859540 96859763 1.760000e-75 294.0
19 TraesCS7D01G403000 chr3B 80.769 286 23 16 5298 5569 277034690 277034957 1.830000e-45 195.0
20 TraesCS7D01G403000 chr3A 88.746 2026 155 42 2001 3973 266691110 266693115 0.000000e+00 2410.0
21 TraesCS7D01G403000 chr3A 93.168 849 48 5 874 1719 266689190 266690031 0.000000e+00 1238.0
22 TraesCS7D01G403000 chr3A 91.798 573 43 4 3998 4568 266693240 266693810 0.000000e+00 795.0
23 TraesCS7D01G403000 chr3A 94.562 331 17 1 4592 4922 266693798 266694127 1.600000e-140 510.0
24 TraesCS7D01G403000 chr3A 85.437 515 44 15 3079 3591 725881200 725881685 2.070000e-139 507.0
25 TraesCS7D01G403000 chr3A 84.810 474 42 16 3199 3670 365962900 365962455 3.540000e-122 449.0
26 TraesCS7D01G403000 chr3A 90.102 293 26 2 3994 4286 629690736 629691025 1.700000e-100 377.0
27 TraesCS7D01G403000 chr3A 81.905 105 15 2 4953 5057 12293387 12293487 1.150000e-12 86.1
28 TraesCS7D01G403000 chr3A 80.952 105 16 2 4953 5057 145592229 145592129 5.360000e-11 80.5
29 TraesCS7D01G403000 chr3A 96.875 32 1 0 5875 5906 102381274 102381305 3.000000e-03 54.7
30 TraesCS7D01G403000 chr2D 86.144 765 70 18 3661 4408 278879476 278880221 0.000000e+00 793.0
31 TraesCS7D01G403000 chr2D 86.486 333 35 5 4410 4742 278880297 278880619 2.210000e-94 357.0
32 TraesCS7D01G403000 chr2D 87.967 241 27 2 5057 5297 601510357 601510595 3.800000e-72 283.0
33 TraesCS7D01G403000 chr4B 86.678 593 47 17 3079 3669 462782774 462782212 4.240000e-176 628.0
34 TraesCS7D01G403000 chr4B 82.759 116 15 4 1792 1904 296169277 296169164 1.480000e-16 99.0
35 TraesCS7D01G403000 chr4B 83.168 101 17 0 5858 5958 474400080 474399980 6.880000e-15 93.5
36 TraesCS7D01G403000 chr4B 82.828 99 10 5 4952 5048 482662671 482662764 1.490000e-11 82.4
37 TraesCS7D01G403000 chr5A 85.687 524 48 17 3079 3599 565382850 565382351 1.590000e-145 527.0
38 TraesCS7D01G403000 chr5A 80.909 110 16 4 4949 5057 11067096 11066991 1.490000e-11 82.4
39 TraesCS7D01G403000 chr5A 80.357 112 18 3 4952 5063 119997814 119997707 1.490000e-11 82.4
40 TraesCS7D01G403000 chr5A 80.000 85 16 1 5875 5958 333369676 333369592 1.940000e-05 62.1
41 TraesCS7D01G403000 chr5A 100.000 32 0 0 5875 5906 644314867 644314898 6.980000e-05 60.2
42 TraesCS7D01G403000 chr2B 90.741 324 27 3 2440 2763 770585705 770586025 4.620000e-116 429.0
43 TraesCS7D01G403000 chr2B 85.772 246 33 2 5059 5303 606831771 606832015 6.410000e-65 259.0
44 TraesCS7D01G403000 chr2B 88.506 174 16 2 2686 2856 274283575 274283403 2.350000e-49 207.0
45 TraesCS7D01G403000 chr1B 90.123 324 28 4 2440 2763 345535819 345535500 9.990000e-113 418.0
46 TraesCS7D01G403000 chr1B 82.569 109 15 3 1792 1898 636877326 636877220 6.880000e-15 93.5
47 TraesCS7D01G403000 chr1B 78.351 97 19 1 5862 5958 37818360 37818454 1.940000e-05 62.1
48 TraesCS7D01G403000 chr1B 78.022 91 18 1 5874 5964 37649702 37649614 1.000000e-03 56.5
49 TraesCS7D01G403000 chr5D 91.235 251 18 4 2602 2849 333076590 333076839 8.000000e-89 339.0
50 TraesCS7D01G403000 chr5D 91.393 244 17 4 2602 2843 492284771 492284530 1.340000e-86 331.0
51 TraesCS7D01G403000 chr5D 87.000 100 12 1 1799 1898 52614327 52614229 1.900000e-20 111.0
52 TraesCS7D01G403000 chr5D 82.716 81 14 0 5875 5955 250054414 250054334 8.960000e-09 73.1
53 TraesCS7D01G403000 chr1A 90.650 246 22 1 5059 5304 565468602 565468846 6.230000e-85 326.0
54 TraesCS7D01G403000 chr1A 81.818 110 12 5 4950 5057 478550996 478551099 1.150000e-12 86.1
55 TraesCS7D01G403000 chr1D 89.451 237 23 2 5068 5304 471140217 471140451 1.360000e-76 298.0
56 TraesCS7D01G403000 chr1D 82.727 110 17 2 1794 1902 367413282 367413174 5.320000e-16 97.1
57 TraesCS7D01G403000 chr1D 84.536 97 13 2 1795 1890 433249880 433249785 1.910000e-15 95.3
58 TraesCS7D01G403000 chr6B 86.066 244 32 2 5059 5301 233471390 233471632 1.780000e-65 261.0
59 TraesCS7D01G403000 chr6B 85.597 243 34 1 5055 5297 583242091 583242332 2.980000e-63 254.0
60 TraesCS7D01G403000 chr5B 85.950 242 33 1 5059 5300 430821991 430821751 2.300000e-64 257.0
61 TraesCS7D01G403000 chr5B 83.478 115 14 3 4943 5057 671828465 671828574 1.140000e-17 102.0
62 TraesCS7D01G403000 chr5B 92.647 68 5 0 3601 3668 37076707 37076640 1.480000e-16 99.0
63 TraesCS7D01G403000 chr5B 83.036 112 12 6 1794 1901 146913743 146913851 1.910000e-15 95.3
64 TraesCS7D01G403000 chr4A 85.597 243 35 0 5059 5301 704277873 704277631 8.290000e-64 255.0
65 TraesCS7D01G403000 chr4A 84.071 113 14 4 1797 1907 72920623 72920733 8.830000e-19 106.0
66 TraesCS7D01G403000 chr2A 86.735 98 9 3 1796 1891 267892311 267892216 8.830000e-19 106.0
67 TraesCS7D01G403000 chr2A 86.076 79 11 0 5875 5953 514722547 514722625 1.150000e-12 86.1
68 TraesCS7D01G403000 chr2A 82.143 84 11 3 5876 5957 77938141 77938222 1.160000e-07 69.4
69 TraesCS7D01G403000 chr6A 84.314 102 16 0 1798 1899 51249831 51249730 4.110000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G403000 chr7D 520385472 520391914 6442 False 11899.000000 11899 100.000000 1 6443 1 chr7D.!!$F1 6442
1 TraesCS7D01G403000 chr7A 596683859 596689743 5884 False 2150.750000 4918 90.263250 1 6383 4 chr7A.!!$F4 6382
2 TraesCS7D01G403000 chr7A 651433101 651433738 637 False 656.000000 656 85.392000 3079 3732 1 chr7A.!!$F3 653
3 TraesCS7D01G403000 chr7B 553440672 553446848 6176 False 2589.666667 4584 91.226333 1 5857 3 chr7B.!!$F1 5856
4 TraesCS7D01G403000 chr3D 191095294 191100200 4906 False 2421.500000 3620 90.312000 830 4922 2 chr3D.!!$F1 4092
5 TraesCS7D01G403000 chr3B 277029330 277034957 5627 False 1629.333333 3559 87.513333 941 5569 3 chr3B.!!$F3 4628
6 TraesCS7D01G403000 chr3B 755228339 755228963 624 False 710.000000 710 87.043000 3079 3732 1 chr3B.!!$F2 653
7 TraesCS7D01G403000 chr3A 266689190 266694127 4937 False 1238.250000 2410 92.068500 874 4922 4 chr3A.!!$F5 4048
8 TraesCS7D01G403000 chr2D 278879476 278880619 1143 False 575.000000 793 86.315000 3661 4742 2 chr2D.!!$F2 1081
9 TraesCS7D01G403000 chr4B 462782212 462782774 562 True 628.000000 628 86.678000 3079 3669 1 chr4B.!!$R2 590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
251 277 0.246086 TGGCGCAAATCCATTTGGTC 59.754 50.000 10.83 6.27 45.44 4.02 F
327 357 1.010350 GGATCTTGATGCAAGCGCG 60.010 57.895 0.00 0.00 40.84 6.86 F
585 625 2.076100 GGTGCATCGTGTTTGAGATCA 58.924 47.619 0.00 0.00 0.00 2.92 F
1709 1803 2.482721 GCACGTGCTAACAACAAGGTAT 59.517 45.455 32.55 0.00 38.21 2.73 F
1813 2690 0.337082 TTCATACTCCCTCCGTCCCA 59.663 55.000 0.00 0.00 0.00 4.37 F
1814 2691 0.337082 TCATACTCCCTCCGTCCCAA 59.663 55.000 0.00 0.00 0.00 4.12 F
1822 2699 1.014352 CCTCCGTCCCAAAATAAGCG 58.986 55.000 0.00 0.00 0.00 4.68 F
3489 5681 1.174783 GAGAAGCTGGTACCTCACGA 58.825 55.000 14.36 0.00 0.00 4.35 F
3837 6050 0.615331 CTGGTGTGCCCATGTCTACT 59.385 55.000 0.00 0.00 44.15 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1803 2680 1.014352 CGCTTATTTTGGGACGGAGG 58.986 55.000 0.00 0.00 0.00 4.30 R
1804 2681 1.664151 GTCGCTTATTTTGGGACGGAG 59.336 52.381 0.00 0.00 37.57 4.63 R
1805 2682 1.729284 GTCGCTTATTTTGGGACGGA 58.271 50.000 0.00 0.00 37.57 4.69 R
3469 5661 0.179161 CGTGAGGTACCAGCTTCTCG 60.179 60.000 15.94 11.38 0.00 4.04 R
3640 5837 1.523758 CTCGGACCTTCCCACTTTTG 58.476 55.000 0.00 0.00 31.13 2.44 R
3688 5885 4.038522 ACACCAATCTGACCTCTATCATCG 59.961 45.833 0.00 0.00 0.00 3.84 R
3837 6050 7.782644 CCAACTCCATAACCCCTTTCAATAATA 59.217 37.037 0.00 0.00 0.00 0.98 R
4785 7269 0.804989 CCAAGAAAAGCGAGCCGATT 59.195 50.000 0.00 0.00 36.95 3.34 R
5833 8346 0.872021 CTGTAGCGATGACGGGAAGC 60.872 60.000 0.00 0.00 40.15 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 106 2.170985 CGCGCCTCGTGTTTTGAG 59.829 61.111 0.00 0.00 32.40 3.02
154 180 1.004927 CCGAATTCGACCGAGAAATGC 60.005 52.381 28.76 0.00 43.02 3.56
177 203 2.427410 CTGTGGCGCGAGTTTTGC 60.427 61.111 12.10 0.00 0.00 3.68
249 275 0.531657 TCTGGCGCAAATCCATTTGG 59.468 50.000 10.83 5.50 45.44 3.28
251 277 0.246086 TGGCGCAAATCCATTTGGTC 59.754 50.000 10.83 6.27 45.44 4.02
301 331 5.464965 TTTTAGTCGCTGCTATAAACTGC 57.535 39.130 0.00 0.00 0.00 4.40
323 353 4.275443 GCTCTTTAGGGATCTTGATGCAAG 59.725 45.833 0.00 0.84 42.25 4.01
327 357 1.010350 GGATCTTGATGCAAGCGCG 60.010 57.895 0.00 0.00 40.84 6.86
344 374 3.745458 AGCGCGGACTTAGTATACTACTC 59.255 47.826 12.25 9.57 40.14 2.59
436 475 4.100529 CGATTGTGGAATGAAATGTGCTC 58.899 43.478 0.00 0.00 0.00 4.26
477 517 3.888930 AGATCCGGTCTTCTTCTCAGATC 59.111 47.826 0.00 0.00 31.47 2.75
585 625 2.076100 GGTGCATCGTGTTTGAGATCA 58.924 47.619 0.00 0.00 0.00 2.92
631 671 7.562088 AGCCTCCTTCTATGGTATACTTATAGC 59.438 40.741 16.38 0.00 37.23 2.97
632 672 7.201929 GCCTCCTTCTATGGTATACTTATAGCC 60.202 44.444 16.38 0.00 36.19 3.93
645 685 4.319177 ACTTATAGCCGGATCAAGCAATC 58.681 43.478 5.05 0.00 0.00 2.67
655 695 5.513094 CCGGATCAAGCAATCTAATCCCTTA 60.513 44.000 0.00 0.00 33.75 2.69
656 696 5.641209 CGGATCAAGCAATCTAATCCCTTAG 59.359 44.000 0.00 0.00 36.46 2.18
657 697 6.519043 CGGATCAAGCAATCTAATCCCTTAGA 60.519 42.308 0.00 0.00 45.61 2.10
808 850 8.244113 ACTTTATGCTAGGTGTTTATGCTTTTC 58.756 33.333 0.00 0.00 0.00 2.29
828 870 9.742552 GCTTTTCTAGTTTTTGTCTAGTTATCG 57.257 33.333 0.00 0.00 36.99 2.92
902 982 9.388506 CATTCTATTCTGGTACTTTGATGACTT 57.611 33.333 0.00 0.00 0.00 3.01
1152 1237 9.965824 AAAAGGATTGTATAGTGTTTCTGTTTG 57.034 29.630 0.00 0.00 0.00 2.93
1248 1334 3.423539 TCTGATGGGTTCCAGAAACTG 57.576 47.619 0.00 0.00 36.75 3.16
1543 1637 6.647229 TGTCTGAGAAATACTGCATGATCTT 58.353 36.000 0.00 0.00 0.00 2.40
1709 1803 2.482721 GCACGTGCTAACAACAAGGTAT 59.517 45.455 32.55 0.00 38.21 2.73
1790 2667 9.462174 CTCATCATAAAGTGCTTAGAGTAAGAG 57.538 37.037 0.00 0.00 38.02 2.85
1798 2675 9.732130 AAAGTGCTTAGAGTAAGAGAATTTCAT 57.268 29.630 0.00 0.00 38.02 2.57
1800 2677 9.810545 AGTGCTTAGAGTAAGAGAATTTCATAC 57.189 33.333 0.00 0.00 38.02 2.39
1801 2678 9.810545 GTGCTTAGAGTAAGAGAATTTCATACT 57.189 33.333 0.00 4.56 41.64 2.12
1807 2684 7.368198 AGTAAGAGAATTTCATACTCCCTCC 57.632 40.000 0.00 0.00 35.93 4.30
1808 2685 4.946478 AGAGAATTTCATACTCCCTCCG 57.054 45.455 0.00 0.00 0.00 4.63
1809 2686 4.290942 AGAGAATTTCATACTCCCTCCGT 58.709 43.478 0.00 0.00 0.00 4.69
1810 2687 4.342665 AGAGAATTTCATACTCCCTCCGTC 59.657 45.833 0.00 0.00 0.00 4.79
1811 2688 3.388350 AGAATTTCATACTCCCTCCGTCC 59.612 47.826 0.00 0.00 0.00 4.79
1812 2689 1.492764 TTTCATACTCCCTCCGTCCC 58.507 55.000 0.00 0.00 0.00 4.46
1813 2690 0.337082 TTCATACTCCCTCCGTCCCA 59.663 55.000 0.00 0.00 0.00 4.37
1814 2691 0.337082 TCATACTCCCTCCGTCCCAA 59.663 55.000 0.00 0.00 0.00 4.12
1815 2692 1.200519 CATACTCCCTCCGTCCCAAA 58.799 55.000 0.00 0.00 0.00 3.28
1816 2693 1.557832 CATACTCCCTCCGTCCCAAAA 59.442 52.381 0.00 0.00 0.00 2.44
1817 2694 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
1818 2695 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1819 2696 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
1820 2697 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
1821 2698 1.064979 TCCCTCCGTCCCAAAATAAGC 60.065 52.381 0.00 0.00 0.00 3.09
1822 2699 1.014352 CCTCCGTCCCAAAATAAGCG 58.986 55.000 0.00 0.00 0.00 4.68
1823 2700 1.406341 CCTCCGTCCCAAAATAAGCGA 60.406 52.381 0.00 0.00 0.00 4.93
1824 2701 1.664151 CTCCGTCCCAAAATAAGCGAC 59.336 52.381 0.00 0.00 0.00 5.19
1825 2702 1.276989 TCCGTCCCAAAATAAGCGACT 59.723 47.619 0.00 0.00 0.00 4.18
1826 2703 1.664151 CCGTCCCAAAATAAGCGACTC 59.336 52.381 0.00 0.00 0.00 3.36
1827 2704 2.343101 CGTCCCAAAATAAGCGACTCA 58.657 47.619 0.00 0.00 0.00 3.41
1828 2705 2.739913 CGTCCCAAAATAAGCGACTCAA 59.260 45.455 0.00 0.00 0.00 3.02
1829 2706 3.424433 CGTCCCAAAATAAGCGACTCAAC 60.424 47.826 0.00 0.00 0.00 3.18
1830 2707 3.751698 GTCCCAAAATAAGCGACTCAACT 59.248 43.478 0.00 0.00 0.00 3.16
1831 2708 4.215613 GTCCCAAAATAAGCGACTCAACTT 59.784 41.667 0.00 0.00 0.00 2.66
1832 2709 4.825085 TCCCAAAATAAGCGACTCAACTTT 59.175 37.500 0.00 0.00 0.00 2.66
1833 2710 4.917415 CCCAAAATAAGCGACTCAACTTTG 59.083 41.667 0.00 0.00 0.00 2.77
1834 2711 5.507315 CCCAAAATAAGCGACTCAACTTTGT 60.507 40.000 0.00 0.00 0.00 2.83
1835 2712 6.293735 CCCAAAATAAGCGACTCAACTTTGTA 60.294 38.462 0.00 0.00 0.00 2.41
1836 2713 6.577427 CCAAAATAAGCGACTCAACTTTGTAC 59.423 38.462 0.00 0.00 0.00 2.90
1837 2714 7.352739 CAAAATAAGCGACTCAACTTTGTACT 58.647 34.615 0.00 0.00 0.00 2.73
1838 2715 8.492748 CAAAATAAGCGACTCAACTTTGTACTA 58.507 33.333 0.00 0.00 0.00 1.82
1839 2716 7.578169 AATAAGCGACTCAACTTTGTACTAC 57.422 36.000 0.00 0.00 0.00 2.73
1840 2717 3.910648 AGCGACTCAACTTTGTACTACC 58.089 45.455 0.00 0.00 0.00 3.18
1841 2718 3.573110 AGCGACTCAACTTTGTACTACCT 59.427 43.478 0.00 0.00 0.00 3.08
1842 2719 4.038883 AGCGACTCAACTTTGTACTACCTT 59.961 41.667 0.00 0.00 0.00 3.50
1843 2720 4.748600 GCGACTCAACTTTGTACTACCTTT 59.251 41.667 0.00 0.00 0.00 3.11
1844 2721 5.922544 GCGACTCAACTTTGTACTACCTTTA 59.077 40.000 0.00 0.00 0.00 1.85
1845 2722 6.089150 GCGACTCAACTTTGTACTACCTTTAG 59.911 42.308 0.00 0.00 0.00 1.85
1846 2723 7.144000 CGACTCAACTTTGTACTACCTTTAGT 58.856 38.462 0.00 0.00 41.69 2.24
1847 2724 8.292448 CGACTCAACTTTGTACTACCTTTAGTA 58.708 37.037 0.00 0.00 39.43 1.82
1863 2740 8.718158 ACCTTTAGTACAAAGTTAGTACTCCT 57.282 34.615 9.05 0.00 46.80 3.69
1864 2741 9.152327 ACCTTTAGTACAAAGTTAGTACTCCTT 57.848 33.333 9.05 0.00 46.80 3.36
1890 2767 6.144845 AGATACATATTTTGGGATGGAGGG 57.855 41.667 0.00 0.00 0.00 4.30
1891 2768 3.618120 ACATATTTTGGGATGGAGGGG 57.382 47.619 0.00 0.00 0.00 4.79
1892 2769 2.179865 ACATATTTTGGGATGGAGGGGG 59.820 50.000 0.00 0.00 0.00 5.40
2897 5048 4.091945 CAGGATGTCACTGTTACATGTTCG 59.908 45.833 12.01 0.00 37.69 3.95
2957 5108 5.522824 GCTACTCCTTTACGATAACTTTGGG 59.477 44.000 0.00 0.00 0.00 4.12
3005 5180 1.849829 GTTTGTTTGGCGCACAAGTAC 59.150 47.619 10.83 7.97 40.82 2.73
3029 5204 6.016777 ACGCTTTCATGATAATTCCATTCCTC 60.017 38.462 0.00 0.00 0.00 3.71
3318 5505 4.375272 ATACACTCAGTATGCACAGATGC 58.625 43.478 0.00 0.00 41.81 3.91
3386 5578 1.812571 GTGAGTTGGAATCCGCACAAT 59.187 47.619 4.50 0.00 0.00 2.71
3457 5649 5.679734 TTGAAGCTCTTGAAAGTGTGATC 57.320 39.130 0.00 0.00 0.00 2.92
3469 5661 5.702670 TGAAAGTGTGATCAAGGAGACATTC 59.297 40.000 0.00 0.00 0.00 2.67
3483 5675 2.166664 AGACATTCGAGAAGCTGGTACC 59.833 50.000 4.43 4.43 0.00 3.34
3489 5681 1.174783 GAGAAGCTGGTACCTCACGA 58.825 55.000 14.36 0.00 0.00 4.35
3497 5689 2.231478 CTGGTACCTCACGACTGATGTT 59.769 50.000 14.36 0.00 0.00 2.71
3640 5837 4.125703 CTGAGGATCTTAACACTGCCATC 58.874 47.826 0.00 0.00 34.92 3.51
3688 5885 4.021894 ACGCACATTATCTCCACTATCTCC 60.022 45.833 0.00 0.00 0.00 3.71
3837 6050 0.615331 CTGGTGTGCCCATGTCTACT 59.385 55.000 0.00 0.00 44.15 2.57
4068 6382 3.665871 CGTATGTCTGACAGATATGCGTG 59.334 47.826 30.62 14.24 43.12 5.34
4156 6470 1.613925 GAAAGGACCTTGTTTCCAGCC 59.386 52.381 7.72 0.00 35.33 4.85
4221 6535 8.972458 TGTACCATTATGTACATAACAGCATT 57.028 30.769 26.55 10.26 44.53 3.56
4380 6696 7.765695 TTTATTCTCAGCTCTGGTTTTCATT 57.234 32.000 0.00 0.00 0.00 2.57
4515 6905 2.879103 ATAATACCCCCTTGGCATCG 57.121 50.000 0.00 0.00 37.83 3.84
4588 7072 7.539712 TTAATGTACAAGCTCTGAGTTATGC 57.460 36.000 0.00 0.00 0.00 3.14
4621 7105 4.786507 TCTGAAATTTCACTTGCATGTCG 58.213 39.130 16.91 3.86 32.90 4.35
4785 7269 1.129624 GTTATGAATGTTGACGGCGCA 59.870 47.619 10.83 2.81 0.00 6.09
4948 7432 8.338259 CGCTCTTTTACAATGATAAATGTAGCT 58.662 33.333 0.00 0.00 33.85 3.32
4961 7445 5.873146 AAATGTAGCTAAGTACTCCCTCC 57.127 43.478 0.00 0.00 0.00 4.30
4979 7463 2.671396 CTCCGTCCCAAATTACTTGTCG 59.329 50.000 0.00 0.00 32.65 4.35
4992 7476 1.470098 ACTTGTCGCTCAAATGGATGC 59.530 47.619 0.00 0.00 35.48 3.91
4999 7483 2.095869 CGCTCAAATGGATGCATCTAGC 60.096 50.000 25.28 20.16 45.96 3.42
5029 7513 9.658799 ATTTTAGTGCGTGCTAGATATATTCAT 57.341 29.630 0.00 0.00 0.00 2.57
5030 7514 9.489084 TTTTAGTGCGTGCTAGATATATTCATT 57.511 29.630 0.00 0.00 0.00 2.57
5031 7515 9.489084 TTTAGTGCGTGCTAGATATATTCATTT 57.511 29.630 0.00 0.00 0.00 2.32
5032 7516 7.356641 AGTGCGTGCTAGATATATTCATTTG 57.643 36.000 0.00 0.00 0.00 2.32
5033 7517 7.154656 AGTGCGTGCTAGATATATTCATTTGA 58.845 34.615 0.00 0.00 0.00 2.69
5034 7518 7.330454 AGTGCGTGCTAGATATATTCATTTGAG 59.670 37.037 0.00 0.00 0.00 3.02
5035 7519 7.116948 GTGCGTGCTAGATATATTCATTTGAGT 59.883 37.037 0.00 0.00 0.00 3.41
5036 7520 7.116805 TGCGTGCTAGATATATTCATTTGAGTG 59.883 37.037 0.00 0.00 0.00 3.51
5039 7523 9.481340 GTGCTAGATATATTCATTTGAGTGACA 57.519 33.333 0.00 0.00 0.00 3.58
5051 7535 4.610605 TTGAGTGACAAGTAATTCCGGA 57.389 40.909 0.00 0.00 34.20 5.14
5057 7541 2.165030 GACAAGTAATTCCGGACGGAGA 59.835 50.000 13.64 5.90 46.06 3.71
5058 7542 2.764572 ACAAGTAATTCCGGACGGAGAT 59.235 45.455 13.64 9.22 46.06 2.75
5059 7543 3.956199 ACAAGTAATTCCGGACGGAGATA 59.044 43.478 13.64 8.28 46.06 1.98
5060 7544 4.202090 ACAAGTAATTCCGGACGGAGATAC 60.202 45.833 20.82 20.82 46.06 2.24
5061 7545 3.830121 AGTAATTCCGGACGGAGATACT 58.170 45.455 23.34 23.34 46.06 2.12
5062 7546 4.978099 AGTAATTCCGGACGGAGATACTA 58.022 43.478 25.66 9.89 46.06 1.82
5063 7547 4.759183 AGTAATTCCGGACGGAGATACTAC 59.241 45.833 25.66 17.73 46.06 2.73
5064 7548 1.972872 TTCCGGACGGAGATACTACC 58.027 55.000 13.64 0.00 46.06 3.18
5065 7549 1.135094 TCCGGACGGAGATACTACCT 58.865 55.000 9.76 0.00 39.76 3.08
5066 7550 1.071385 TCCGGACGGAGATACTACCTC 59.929 57.143 9.76 0.00 39.76 3.85
5067 7551 1.521580 CGGACGGAGATACTACCTCC 58.478 60.000 0.00 0.00 45.16 4.30
5072 7556 2.955342 GGAGATACTACCTCCGTCCT 57.045 55.000 0.00 0.00 40.58 3.85
5073 7557 2.506444 GGAGATACTACCTCCGTCCTG 58.494 57.143 0.00 0.00 40.58 3.86
5074 7558 2.506444 GAGATACTACCTCCGTCCTGG 58.494 57.143 0.00 0.00 40.09 4.45
5075 7559 1.851653 AGATACTACCTCCGTCCTGGT 59.148 52.381 0.00 0.00 39.52 4.00
5076 7560 2.244252 AGATACTACCTCCGTCCTGGTT 59.756 50.000 0.00 0.00 39.52 3.67
5077 7561 2.610438 TACTACCTCCGTCCTGGTTT 57.390 50.000 0.00 0.00 39.52 3.27
5078 7562 2.610438 ACTACCTCCGTCCTGGTTTA 57.390 50.000 0.00 0.00 39.52 2.01
5079 7563 2.893424 ACTACCTCCGTCCTGGTTTAA 58.107 47.619 0.00 0.00 39.52 1.52
5080 7564 3.447950 ACTACCTCCGTCCTGGTTTAAT 58.552 45.455 0.00 0.00 39.52 1.40
5081 7565 2.781681 ACCTCCGTCCTGGTTTAATG 57.218 50.000 0.00 0.00 39.52 1.90
5082 7566 1.280998 ACCTCCGTCCTGGTTTAATGG 59.719 52.381 0.00 0.00 39.52 3.16
5083 7567 1.280998 CCTCCGTCCTGGTTTAATGGT 59.719 52.381 0.00 0.00 39.52 3.55
5084 7568 2.629051 CTCCGTCCTGGTTTAATGGTC 58.371 52.381 0.00 0.00 39.52 4.02
5085 7569 1.279846 TCCGTCCTGGTTTAATGGTCC 59.720 52.381 0.00 0.00 39.52 4.46
5086 7570 1.680860 CCGTCCTGGTTTAATGGTCCC 60.681 57.143 0.00 0.00 0.00 4.46
5087 7571 1.746470 GTCCTGGTTTAATGGTCCCG 58.254 55.000 0.00 0.00 0.00 5.14
5088 7572 1.003928 GTCCTGGTTTAATGGTCCCGT 59.996 52.381 0.00 0.00 0.00 5.28
5089 7573 1.706305 TCCTGGTTTAATGGTCCCGTT 59.294 47.619 0.00 0.00 0.00 4.44
5090 7574 2.089201 CCTGGTTTAATGGTCCCGTTC 58.911 52.381 0.00 0.00 0.00 3.95
5091 7575 1.735571 CTGGTTTAATGGTCCCGTTCG 59.264 52.381 0.00 0.00 0.00 3.95
5092 7576 1.072015 TGGTTTAATGGTCCCGTTCGT 59.928 47.619 0.00 0.00 0.00 3.85
5093 7577 2.301296 TGGTTTAATGGTCCCGTTCGTA 59.699 45.455 0.00 0.00 0.00 3.43
5094 7578 3.055240 TGGTTTAATGGTCCCGTTCGTAT 60.055 43.478 0.00 0.00 0.00 3.06
5095 7579 3.940852 GGTTTAATGGTCCCGTTCGTATT 59.059 43.478 0.00 0.00 0.00 1.89
5096 7580 4.395854 GGTTTAATGGTCCCGTTCGTATTT 59.604 41.667 0.00 0.00 0.00 1.40
5097 7581 5.106197 GGTTTAATGGTCCCGTTCGTATTTT 60.106 40.000 0.00 0.00 0.00 1.82
5098 7582 5.548706 TTAATGGTCCCGTTCGTATTTTG 57.451 39.130 0.00 0.00 0.00 2.44
5099 7583 2.547299 TGGTCCCGTTCGTATTTTGT 57.453 45.000 0.00 0.00 0.00 2.83
5100 7584 2.144730 TGGTCCCGTTCGTATTTTGTG 58.855 47.619 0.00 0.00 0.00 3.33
5101 7585 1.135888 GGTCCCGTTCGTATTTTGTGC 60.136 52.381 0.00 0.00 0.00 4.57
5102 7586 1.135888 GTCCCGTTCGTATTTTGTGCC 60.136 52.381 0.00 0.00 0.00 5.01
5103 7587 0.875728 CCCGTTCGTATTTTGTGCCA 59.124 50.000 0.00 0.00 0.00 4.92
5104 7588 1.267261 CCCGTTCGTATTTTGTGCCAA 59.733 47.619 0.00 0.00 0.00 4.52
5105 7589 2.287668 CCCGTTCGTATTTTGTGCCAAA 60.288 45.455 0.00 0.00 0.00 3.28
5106 7590 3.570559 CCGTTCGTATTTTGTGCCAAAT 58.429 40.909 1.89 0.00 0.00 2.32
5107 7591 3.984633 CCGTTCGTATTTTGTGCCAAATT 59.015 39.130 1.89 2.10 0.00 1.82
5108 7592 4.446051 CCGTTCGTATTTTGTGCCAAATTT 59.554 37.500 1.89 0.00 0.00 1.82
5109 7593 5.050702 CCGTTCGTATTTTGTGCCAAATTTT 60.051 36.000 1.89 0.00 0.00 1.82
5110 7594 6.062021 CGTTCGTATTTTGTGCCAAATTTTC 58.938 36.000 1.89 0.00 0.00 2.29
5111 7595 6.291849 CGTTCGTATTTTGTGCCAAATTTTCA 60.292 34.615 1.89 0.00 0.00 2.69
5112 7596 6.517914 TCGTATTTTGTGCCAAATTTTCAC 57.482 33.333 11.49 11.49 0.00 3.18
5113 7597 5.463724 TCGTATTTTGTGCCAAATTTTCACC 59.536 36.000 14.36 2.04 0.00 4.02
5114 7598 5.465056 CGTATTTTGTGCCAAATTTTCACCT 59.535 36.000 14.36 3.93 0.00 4.00
5115 7599 6.018343 CGTATTTTGTGCCAAATTTTCACCTT 60.018 34.615 14.36 3.81 0.00 3.50
5116 7600 7.169982 CGTATTTTGTGCCAAATTTTCACCTTA 59.830 33.333 14.36 4.11 0.00 2.69
5117 7601 6.917217 TTTTGTGCCAAATTTTCACCTTAG 57.083 33.333 14.36 0.00 0.00 2.18
5118 7602 5.860941 TTGTGCCAAATTTTCACCTTAGA 57.139 34.783 14.36 0.00 0.00 2.10
5119 7603 6.418057 TTGTGCCAAATTTTCACCTTAGAT 57.582 33.333 14.36 0.00 0.00 1.98
5120 7604 6.418057 TGTGCCAAATTTTCACCTTAGATT 57.582 33.333 14.36 0.00 0.00 2.40
5121 7605 6.825610 TGTGCCAAATTTTCACCTTAGATTT 58.174 32.000 14.36 0.00 0.00 2.17
5122 7606 7.957002 TGTGCCAAATTTTCACCTTAGATTTA 58.043 30.769 14.36 0.00 0.00 1.40
5123 7607 8.424918 TGTGCCAAATTTTCACCTTAGATTTAA 58.575 29.630 14.36 0.00 0.00 1.52
5124 7608 8.708742 GTGCCAAATTTTCACCTTAGATTTAAC 58.291 33.333 8.45 0.00 0.00 2.01
5125 7609 8.646900 TGCCAAATTTTCACCTTAGATTTAACT 58.353 29.630 0.00 0.00 0.00 2.24
5154 7638 4.597404 TGCTAATGCATGTCACCAAAAA 57.403 36.364 0.00 0.00 45.31 1.94
5155 7639 5.149973 TGCTAATGCATGTCACCAAAAAT 57.850 34.783 0.00 0.00 45.31 1.82
5156 7640 6.278172 TGCTAATGCATGTCACCAAAAATA 57.722 33.333 0.00 0.00 45.31 1.40
5157 7641 6.331845 TGCTAATGCATGTCACCAAAAATAG 58.668 36.000 0.00 0.00 45.31 1.73
5158 7642 5.232838 GCTAATGCATGTCACCAAAAATAGC 59.767 40.000 0.00 1.15 39.41 2.97
5159 7643 4.804868 ATGCATGTCACCAAAAATAGCA 57.195 36.364 0.00 0.00 0.00 3.49
5160 7644 4.804868 TGCATGTCACCAAAAATAGCAT 57.195 36.364 0.00 0.00 0.00 3.79
5161 7645 4.746729 TGCATGTCACCAAAAATAGCATC 58.253 39.130 0.00 0.00 0.00 3.91
5162 7646 4.220163 TGCATGTCACCAAAAATAGCATCA 59.780 37.500 0.00 0.00 0.00 3.07
5163 7647 5.105269 TGCATGTCACCAAAAATAGCATCAT 60.105 36.000 0.00 0.00 0.00 2.45
5164 7648 5.813672 GCATGTCACCAAAAATAGCATCATT 59.186 36.000 0.00 0.00 0.00 2.57
5165 7649 6.237996 GCATGTCACCAAAAATAGCATCATTG 60.238 38.462 0.00 0.00 0.00 2.82
5166 7650 6.587206 TGTCACCAAAAATAGCATCATTGA 57.413 33.333 0.00 0.00 0.00 2.57
5167 7651 6.990798 TGTCACCAAAAATAGCATCATTGAA 58.009 32.000 0.00 0.00 0.00 2.69
5168 7652 7.440198 TGTCACCAAAAATAGCATCATTGAAA 58.560 30.769 0.00 0.00 0.00 2.69
5169 7653 7.930325 TGTCACCAAAAATAGCATCATTGAAAA 59.070 29.630 0.00 0.00 0.00 2.29
5170 7654 8.223100 GTCACCAAAAATAGCATCATTGAAAAC 58.777 33.333 0.00 0.00 0.00 2.43
5171 7655 8.149647 TCACCAAAAATAGCATCATTGAAAACT 58.850 29.630 0.00 0.00 0.00 2.66
5172 7656 9.421806 CACCAAAAATAGCATCATTGAAAACTA 57.578 29.630 0.00 0.00 0.00 2.24
5209 7693 9.486123 TGAATCCAAGGATATAATTTTTGGTCA 57.514 29.630 1.29 0.00 39.39 4.02
5210 7694 9.750125 GAATCCAAGGATATAATTTTTGGTCAC 57.250 33.333 1.29 0.00 39.39 3.67
5211 7695 8.837099 ATCCAAGGATATAATTTTTGGTCACA 57.163 30.769 0.00 0.00 39.39 3.58
5212 7696 8.837099 TCCAAGGATATAATTTTTGGTCACAT 57.163 30.769 1.94 0.00 39.39 3.21
5213 7697 8.694540 TCCAAGGATATAATTTTTGGTCACATG 58.305 33.333 0.00 0.00 39.39 3.21
5214 7698 7.439056 CCAAGGATATAATTTTTGGTCACATGC 59.561 37.037 0.00 0.00 34.88 4.06
5215 7699 7.658525 AGGATATAATTTTTGGTCACATGCA 57.341 32.000 0.00 0.00 0.00 3.96
5216 7700 8.253867 AGGATATAATTTTTGGTCACATGCAT 57.746 30.769 0.00 0.00 0.00 3.96
5217 7701 8.707449 AGGATATAATTTTTGGTCACATGCATT 58.293 29.630 0.00 0.00 0.00 3.56
5218 7702 8.981647 GGATATAATTTTTGGTCACATGCATTC 58.018 33.333 0.00 0.00 0.00 2.67
5219 7703 9.531942 GATATAATTTTTGGTCACATGCATTCA 57.468 29.630 0.00 0.00 0.00 2.57
5223 7707 8.428186 AATTTTTGGTCACATGCATTCATATC 57.572 30.769 0.00 0.00 0.00 1.63
5224 7708 6.778834 TTTTGGTCACATGCATTCATATCT 57.221 33.333 0.00 0.00 0.00 1.98
5225 7709 6.778834 TTTGGTCACATGCATTCATATCTT 57.221 33.333 0.00 0.00 0.00 2.40
5226 7710 7.878547 TTTGGTCACATGCATTCATATCTTA 57.121 32.000 0.00 0.00 0.00 2.10
5227 7711 8.467963 TTTGGTCACATGCATTCATATCTTAT 57.532 30.769 0.00 0.00 0.00 1.73
5228 7712 8.467963 TTGGTCACATGCATTCATATCTTATT 57.532 30.769 0.00 0.00 0.00 1.40
5229 7713 9.571816 TTGGTCACATGCATTCATATCTTATTA 57.428 29.630 0.00 0.00 0.00 0.98
5230 7714 9.223099 TGGTCACATGCATTCATATCTTATTAG 57.777 33.333 0.00 0.00 0.00 1.73
5231 7715 9.224267 GGTCACATGCATTCATATCTTATTAGT 57.776 33.333 0.00 0.00 0.00 2.24
5259 7743 9.495572 AAATCTTTGGTCAAAGTTTTACACAAA 57.504 25.926 21.33 12.18 43.17 2.83
5260 7744 9.495572 AATCTTTGGTCAAAGTTTTACACAAAA 57.504 25.926 19.13 5.44 45.88 2.44
5261 7745 9.665719 ATCTTTGGTCAAAGTTTTACACAAAAT 57.334 25.926 19.13 2.91 45.88 1.82
5264 7748 9.706691 TTTGGTCAAAGTTTTACACAAAATACA 57.293 25.926 11.13 0.00 36.10 2.29
5265 7749 9.706691 TTGGTCAAAGTTTTACACAAAATACAA 57.293 25.926 2.54 0.00 36.10 2.41
5266 7750 9.706691 TGGTCAAAGTTTTACACAAAATACAAA 57.293 25.926 2.54 0.00 36.10 2.83
5269 7753 9.372369 TCAAAGTTTTACACAAAATACAAAGGG 57.628 29.630 0.00 0.00 36.10 3.95
5270 7754 8.608317 CAAAGTTTTACACAAAATACAAAGGGG 58.392 33.333 0.00 0.00 36.10 4.79
5271 7755 7.663043 AGTTTTACACAAAATACAAAGGGGA 57.337 32.000 0.00 0.00 36.10 4.81
5272 7756 7.494211 AGTTTTACACAAAATACAAAGGGGAC 58.506 34.615 0.00 0.00 36.10 4.46
5273 7757 6.702723 GTTTTACACAAAATACAAAGGGGACC 59.297 38.462 0.00 0.00 41.94 4.46
5274 7758 7.633116 GTTTTACACAAAATACAAAGGGGACCA 60.633 37.037 0.00 0.00 43.23 4.02
5492 7990 9.068008 GTGTGTACACCATAAAAATAAAATCGG 57.932 33.333 22.91 0.00 40.85 4.18
5616 8124 2.696707 ACCATGAAAGCATTAGGGCATG 59.303 45.455 0.00 0.00 35.83 4.06
5687 8200 6.072508 TGGCTGTCAAATTTAGTTCAGACATC 60.073 38.462 12.43 7.19 36.26 3.06
5695 8208 5.576563 TTTAGTTCAGACATCTGGGGAAA 57.423 39.130 8.99 2.98 43.91 3.13
5705 8218 6.377996 CAGACATCTGGGGAAAATTGTAATGA 59.622 38.462 0.58 0.00 40.20 2.57
5801 8314 0.891373 TTGCTGCTTCGAGCTCTAGT 59.109 50.000 12.85 0.00 42.97 2.57
5832 8345 3.381272 CGATCCCAAACTTATTGGCATGT 59.619 43.478 1.63 0.00 38.23 3.21
5833 8346 4.685924 GATCCCAAACTTATTGGCATGTG 58.314 43.478 1.63 0.00 38.23 3.21
5836 8349 3.306919 CCCAAACTTATTGGCATGTGCTT 60.307 43.478 4.84 0.00 41.70 3.91
5845 8358 1.718757 GGCATGTGCTTCCCGTCATC 61.719 60.000 4.84 0.00 41.70 2.92
5851 8364 1.141019 GCTTCCCGTCATCGCTACA 59.859 57.895 0.00 0.00 35.54 2.74
5852 8365 0.872021 GCTTCCCGTCATCGCTACAG 60.872 60.000 0.00 0.00 35.54 2.74
5857 8370 2.810274 TCCCGTCATCGCTACAGTATAC 59.190 50.000 0.00 0.00 35.54 1.47
5859 8372 3.120269 CCCGTCATCGCTACAGTATACTC 60.120 52.174 1.26 0.00 35.54 2.59
5860 8373 3.747010 CCGTCATCGCTACAGTATACTCT 59.253 47.826 1.26 0.00 35.54 3.24
5863 8376 5.164031 CGTCATCGCTACAGTATACTCTCTC 60.164 48.000 1.26 0.00 0.00 3.20
5864 8377 5.929992 GTCATCGCTACAGTATACTCTCTCT 59.070 44.000 1.26 0.00 0.00 3.10
5865 8378 5.929415 TCATCGCTACAGTATACTCTCTCTG 59.071 44.000 1.26 0.00 0.00 3.35
5866 8379 5.279255 TCGCTACAGTATACTCTCTCTGT 57.721 43.478 1.26 0.36 42.56 3.41
5867 8380 5.672503 TCGCTACAGTATACTCTCTCTGTT 58.327 41.667 1.26 0.00 40.77 3.16
5868 8381 5.754406 TCGCTACAGTATACTCTCTCTGTTC 59.246 44.000 1.26 0.00 40.77 3.18
5870 8383 6.203915 CGCTACAGTATACTCTCTCTGTTCAT 59.796 42.308 1.26 0.00 40.77 2.57
5871 8384 7.254966 CGCTACAGTATACTCTCTCTGTTCATT 60.255 40.741 1.26 0.00 40.77 2.57
5872 8385 8.073768 GCTACAGTATACTCTCTCTGTTCATTC 58.926 40.741 1.26 0.00 40.77 2.67
5873 8386 9.337396 CTACAGTATACTCTCTCTGTTCATTCT 57.663 37.037 1.26 0.00 40.77 2.40
5874 8387 8.588290 ACAGTATACTCTCTCTGTTCATTCTT 57.412 34.615 1.26 0.00 37.81 2.52
5875 8388 9.688091 ACAGTATACTCTCTCTGTTCATTCTTA 57.312 33.333 1.26 0.00 37.81 2.10
5912 8425 9.586435 TGGATATTTCAATATAGACTGCATACG 57.414 33.333 0.00 0.00 31.96 3.06
5913 8426 9.035607 GGATATTTCAATATAGACTGCATACGG 57.964 37.037 0.00 0.00 31.96 4.02
5914 8427 9.803315 GATATTTCAATATAGACTGCATACGGA 57.197 33.333 0.00 0.00 31.96 4.69
5917 8430 7.889589 TTCAATATAGACTGCATACGGATTG 57.110 36.000 0.00 0.00 0.00 2.67
5918 8431 6.398095 TCAATATAGACTGCATACGGATTGG 58.602 40.000 0.00 0.00 0.00 3.16
5919 8432 6.210584 TCAATATAGACTGCATACGGATTGGA 59.789 38.462 0.00 0.00 0.00 3.53
5920 8433 4.955811 ATAGACTGCATACGGATTGGAA 57.044 40.909 0.00 0.00 0.00 3.53
5921 8434 2.906354 AGACTGCATACGGATTGGAAC 58.094 47.619 0.00 0.00 0.00 3.62
5922 8435 1.593006 GACTGCATACGGATTGGAACG 59.407 52.381 0.00 0.00 0.00 3.95
5923 8436 1.206132 ACTGCATACGGATTGGAACGA 59.794 47.619 0.00 0.00 0.00 3.85
5924 8437 1.860950 CTGCATACGGATTGGAACGAG 59.139 52.381 0.00 0.00 0.00 4.18
5925 8438 1.206132 TGCATACGGATTGGAACGAGT 59.794 47.619 0.00 0.00 0.00 4.18
5926 8439 1.593006 GCATACGGATTGGAACGAGTG 59.407 52.381 0.00 0.00 0.00 3.51
5927 8440 2.737359 GCATACGGATTGGAACGAGTGA 60.737 50.000 0.00 0.00 0.00 3.41
5928 8441 3.517602 CATACGGATTGGAACGAGTGAA 58.482 45.455 0.00 0.00 0.00 3.18
5929 8442 1.792006 ACGGATTGGAACGAGTGAAC 58.208 50.000 0.00 0.00 0.00 3.18
5930 8443 0.713883 CGGATTGGAACGAGTGAACG 59.286 55.000 0.00 0.00 39.31 3.95
5931 8444 0.442699 GGATTGGAACGAGTGAACGC 59.557 55.000 0.00 0.00 36.70 4.84
5932 8445 1.144969 GATTGGAACGAGTGAACGCA 58.855 50.000 0.00 0.00 36.70 5.24
5933 8446 0.865769 ATTGGAACGAGTGAACGCAC 59.134 50.000 0.00 0.00 45.49 5.34
5944 8457 3.439932 GTGAACGCACACACTAGAATG 57.560 47.619 0.00 0.00 44.51 2.67
5945 8458 1.798223 TGAACGCACACACTAGAATGC 59.202 47.619 0.00 0.00 34.66 3.56
5949 8462 1.714794 GCACACACTAGAATGCGTCT 58.285 50.000 0.00 0.00 40.71 4.18
5950 8463 2.876091 GCACACACTAGAATGCGTCTA 58.124 47.619 0.00 0.00 37.84 2.59
5951 8464 3.448686 GCACACACTAGAATGCGTCTAT 58.551 45.455 0.00 0.00 38.20 1.98
5952 8465 4.607955 GCACACACTAGAATGCGTCTATA 58.392 43.478 0.00 0.00 38.20 1.31
5953 8466 5.223382 GCACACACTAGAATGCGTCTATAT 58.777 41.667 0.00 0.00 38.20 0.86
5954 8467 6.379386 GCACACACTAGAATGCGTCTATATA 58.621 40.000 0.00 0.00 38.20 0.86
5955 8468 6.305877 GCACACACTAGAATGCGTCTATATAC 59.694 42.308 0.00 0.00 38.20 1.47
5956 8469 7.360361 CACACACTAGAATGCGTCTATATACA 58.640 38.462 0.00 0.00 38.20 2.29
5957 8470 8.023706 CACACACTAGAATGCGTCTATATACAT 58.976 37.037 0.00 0.00 38.20 2.29
5958 8471 8.577296 ACACACTAGAATGCGTCTATATACATT 58.423 33.333 0.00 0.00 38.20 2.71
5959 8472 9.066939 CACACTAGAATGCGTCTATATACATTC 57.933 37.037 12.59 12.59 45.56 2.67
5960 8473 8.793592 ACACTAGAATGCGTCTATATACATTCA 58.206 33.333 18.65 9.25 46.90 2.57
5961 8474 9.626045 CACTAGAATGCGTCTATATACATTCAA 57.374 33.333 18.65 0.00 46.90 2.69
5965 8478 9.710900 AGAATGCGTCTATATACATTCAATTCA 57.289 29.630 18.65 0.00 46.90 2.57
5966 8479 9.964253 GAATGCGTCTATATACATTCAATTCAG 57.036 33.333 14.44 0.00 44.91 3.02
5967 8480 9.710900 AATGCGTCTATATACATTCAATTCAGA 57.289 29.630 0.00 0.00 0.00 3.27
5968 8481 9.710900 ATGCGTCTATATACATTCAATTCAGAA 57.289 29.630 0.00 0.00 0.00 3.02
5969 8482 8.978539 TGCGTCTATATACATTCAATTCAGAAC 58.021 33.333 0.00 0.00 0.00 3.01
5984 8497 8.668353 TCAATTCAGAACATCTTATAACAGTGC 58.332 33.333 0.00 0.00 0.00 4.40
5987 8500 5.576774 TCAGAACATCTTATAACAGTGCACG 59.423 40.000 12.01 9.15 0.00 5.34
6053 8566 9.896645 ATGTGTTTGATATGTCTATCTTCTGTT 57.103 29.630 0.00 0.00 35.69 3.16
6054 8567 9.154847 TGTGTTTGATATGTCTATCTTCTGTTG 57.845 33.333 0.00 0.00 35.69 3.33
6055 8568 9.371136 GTGTTTGATATGTCTATCTTCTGTTGA 57.629 33.333 0.00 0.00 35.69 3.18
6069 8582 0.953727 TGTTGATTCACAGCACCAGC 59.046 50.000 0.00 0.00 42.56 4.85
6075 8588 2.203252 CACAGCACCAGCCACTGT 60.203 61.111 0.00 0.00 45.25 3.55
6077 8590 2.670934 CAGCACCAGCCACTGTCC 60.671 66.667 0.00 0.00 43.56 4.02
6080 8593 2.033141 CACCAGCCACTGTCCCTG 59.967 66.667 0.00 0.00 0.00 4.45
6084 8597 3.644606 AGCCACTGTCCCTGCCAG 61.645 66.667 0.00 0.00 36.01 4.85
6119 8632 1.452110 TACATGTGCTTTGATGCGCT 58.548 45.000 9.73 0.00 43.17 5.92
6120 8633 0.109458 ACATGTGCTTTGATGCGCTG 60.109 50.000 9.73 0.00 43.17 5.18
6127 8640 1.981533 GCTTTGATGCGCTGTTTTCTC 59.018 47.619 9.73 0.00 0.00 2.87
6132 8645 3.407698 TGATGCGCTGTTTTCTCCTTTA 58.592 40.909 9.73 0.00 0.00 1.85
6148 8661 6.491394 TCTCCTTTAATCGTTGTGTTTGTTG 58.509 36.000 0.00 0.00 0.00 3.33
6214 8728 9.451002 TGATAACATACCGAAAAGAAAATGGTA 57.549 29.630 0.00 0.00 39.35 3.25
6227 8741 0.106015 AATGGTATGCAGGAAGGCCC 60.106 55.000 0.00 0.00 33.31 5.80
6228 8742 1.288508 ATGGTATGCAGGAAGGCCCA 61.289 55.000 0.00 0.00 37.41 5.36
6233 8747 0.613012 ATGCAGGAAGGCCCAGTTTC 60.613 55.000 0.00 0.00 37.41 2.78
6241 8755 1.971167 GGCCCAGTTTCGTGATGCA 60.971 57.895 0.00 0.00 0.00 3.96
6248 8762 5.036737 CCCAGTTTCGTGATGCAATTTATC 58.963 41.667 0.00 0.00 0.00 1.75
6287 8801 8.620116 TGACATGTCTATTTTGATTTCTGTCA 57.380 30.769 25.55 0.00 37.52 3.58
6288 8802 8.506437 TGACATGTCTATTTTGATTTCTGTCAC 58.494 33.333 25.55 0.00 35.62 3.67
6290 8804 8.849168 ACATGTCTATTTTGATTTCTGTCACAA 58.151 29.630 0.00 0.00 0.00 3.33
6291 8805 9.121517 CATGTCTATTTTGATTTCTGTCACAAC 57.878 33.333 0.00 0.00 0.00 3.32
6306 8826 6.056090 TGTCACAACTTATACCATGCCTTA 57.944 37.500 0.00 0.00 0.00 2.69
6311 8831 6.481643 ACAACTTATACCATGCCTTAGTTGT 58.518 36.000 17.98 17.98 45.36 3.32
6326 8846 1.021968 GTTGTTCCTGGTGTGGTGAC 58.978 55.000 0.00 0.00 0.00 3.67
6327 8847 0.916086 TTGTTCCTGGTGTGGTGACT 59.084 50.000 0.00 0.00 0.00 3.41
6328 8848 0.916086 TGTTCCTGGTGTGGTGACTT 59.084 50.000 0.00 0.00 0.00 3.01
6329 8849 1.308998 GTTCCTGGTGTGGTGACTTG 58.691 55.000 0.00 0.00 0.00 3.16
6330 8850 0.182537 TTCCTGGTGTGGTGACTTGG 59.817 55.000 0.00 0.00 0.00 3.61
6331 8851 0.692756 TCCTGGTGTGGTGACTTGGA 60.693 55.000 0.00 0.00 0.00 3.53
6332 8852 0.182537 CCTGGTGTGGTGACTTGGAA 59.817 55.000 0.00 0.00 0.00 3.53
6333 8853 1.597742 CTGGTGTGGTGACTTGGAAG 58.402 55.000 0.00 0.00 0.00 3.46
6334 8854 0.182537 TGGTGTGGTGACTTGGAAGG 59.817 55.000 0.00 0.00 0.00 3.46
6335 8855 1.172812 GGTGTGGTGACTTGGAAGGC 61.173 60.000 0.00 0.00 33.51 4.35
6336 8856 1.150536 TGTGGTGACTTGGAAGGCC 59.849 57.895 0.00 0.00 31.13 5.19
6337 8857 1.603739 GTGGTGACTTGGAAGGCCC 60.604 63.158 0.00 0.00 31.13 5.80
6338 8858 2.081787 TGGTGACTTGGAAGGCCCA 61.082 57.895 0.00 0.00 44.93 5.36
6361 8881 7.147949 CCCAGCTTCAATTTATTGTTGAGATCT 60.148 37.037 0.00 0.00 36.96 2.75
6363 8883 9.073368 CAGCTTCAATTTATTGTTGAGATCTTG 57.927 33.333 0.00 0.00 36.96 3.02
6364 8884 9.017509 AGCTTCAATTTATTGTTGAGATCTTGA 57.982 29.630 0.00 0.00 36.96 3.02
6365 8885 9.798994 GCTTCAATTTATTGTTGAGATCTTGAT 57.201 29.630 0.00 0.00 36.96 2.57
6378 8899 5.605908 TGAGATCTTGATCTTTGCTAGGGAT 59.394 40.000 13.56 0.00 0.00 3.85
6385 8906 8.543774 TCTTGATCTTTGCTAGGGATATATTCC 58.456 37.037 1.13 1.13 44.62 3.01
6386 8907 8.454859 TTGATCTTTGCTAGGGATATATTCCT 57.545 34.615 17.14 17.14 44.75 3.36
6387 8908 8.454859 TGATCTTTGCTAGGGATATATTCCTT 57.545 34.615 18.17 4.72 44.75 3.36
6388 8909 8.543774 TGATCTTTGCTAGGGATATATTCCTTC 58.456 37.037 18.17 10.77 44.75 3.46
6389 8910 7.259088 TCTTTGCTAGGGATATATTCCTTCC 57.741 40.000 18.17 9.79 44.75 3.46
6390 8911 5.677319 TTGCTAGGGATATATTCCTTCCG 57.323 43.478 18.17 8.32 44.75 4.30
6391 8912 4.684724 TGCTAGGGATATATTCCTTCCGT 58.315 43.478 18.17 3.95 44.75 4.69
6392 8913 4.710375 TGCTAGGGATATATTCCTTCCGTC 59.290 45.833 18.17 4.27 44.75 4.79
6393 8914 4.957327 GCTAGGGATATATTCCTTCCGTCT 59.043 45.833 18.17 0.00 44.75 4.18
6394 8915 5.068067 GCTAGGGATATATTCCTTCCGTCTC 59.932 48.000 18.17 0.00 44.75 3.36
6395 8916 5.011982 AGGGATATATTCCTTCCGTCTCA 57.988 43.478 6.76 0.00 44.75 3.27
6396 8917 5.403512 AGGGATATATTCCTTCCGTCTCAA 58.596 41.667 6.76 0.00 44.75 3.02
6397 8918 5.844516 AGGGATATATTCCTTCCGTCTCAAA 59.155 40.000 6.76 0.00 44.75 2.69
6398 8919 6.502158 AGGGATATATTCCTTCCGTCTCAAAT 59.498 38.462 6.76 0.00 44.75 2.32
6399 8920 7.678598 AGGGATATATTCCTTCCGTCTCAAATA 59.321 37.037 6.76 0.00 44.75 1.40
6400 8921 8.319146 GGGATATATTCCTTCCGTCTCAAATAA 58.681 37.037 2.35 0.00 44.75 1.40
6401 8922 9.372369 GGATATATTCCTTCCGTCTCAAATAAG 57.628 37.037 0.00 0.00 41.78 1.73
6402 8923 9.930693 GATATATTCCTTCCGTCTCAAATAAGT 57.069 33.333 0.00 0.00 0.00 2.24
6403 8924 9.712305 ATATATTCCTTCCGTCTCAAATAAGTG 57.288 33.333 0.00 0.00 0.00 3.16
6404 8925 5.477607 TTCCTTCCGTCTCAAATAAGTGA 57.522 39.130 0.00 0.00 0.00 3.41
6405 8926 4.817517 TCCTTCCGTCTCAAATAAGTGAC 58.182 43.478 0.00 0.00 0.00 3.67
6411 8932 5.763444 CGTCTCAAATAAGTGACGTTGAT 57.237 39.130 9.55 0.00 45.28 2.57
6412 8933 6.153212 CGTCTCAAATAAGTGACGTTGATT 57.847 37.500 9.55 0.00 45.28 2.57
6413 8934 6.590357 CGTCTCAAATAAGTGACGTTGATTT 58.410 36.000 9.55 0.00 45.28 2.17
6414 8935 7.726079 CGTCTCAAATAAGTGACGTTGATTTA 58.274 34.615 9.55 0.00 45.28 1.40
6415 8936 7.893236 CGTCTCAAATAAGTGACGTTGATTTAG 59.107 37.037 9.55 0.00 45.28 1.85
6416 8937 8.709646 GTCTCAAATAAGTGACGTTGATTTAGT 58.290 33.333 0.00 0.00 30.06 2.24
6417 8938 9.917129 TCTCAAATAAGTGACGTTGATTTAGTA 57.083 29.630 0.00 0.00 30.06 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
177 203 1.812571 AGCAACCTGCCAAATACGAAG 59.187 47.619 0.00 0.00 46.52 3.79
249 275 2.930562 ACCTGGACCTGGGCTGAC 60.931 66.667 20.61 0.00 0.00 3.51
251 277 1.488705 TAACACCTGGACCTGGGCTG 61.489 60.000 20.61 13.17 0.00 4.85
298 328 3.814283 GCATCAAGATCCCTAAAGAGCAG 59.186 47.826 0.00 0.00 0.00 4.24
301 331 4.275443 GCTTGCATCAAGATCCCTAAAGAG 59.725 45.833 10.44 0.00 43.42 2.85
344 374 8.480643 AGATTCGAATCCACAGTAAAAACTAG 57.519 34.615 29.82 0.00 36.04 2.57
436 475 0.041400 TCAAGCAAACATGACGCACG 60.041 50.000 0.00 0.00 0.00 5.34
631 671 3.077359 GGGATTAGATTGCTTGATCCGG 58.923 50.000 0.00 0.00 36.90 5.14
632 672 4.013267 AGGGATTAGATTGCTTGATCCG 57.987 45.455 0.00 0.00 36.90 4.18
655 695 4.582656 CAGGACACTCCGAGAATCTAATCT 59.417 45.833 1.33 0.00 42.75 2.40
656 696 4.339814 ACAGGACACTCCGAGAATCTAATC 59.660 45.833 1.33 0.00 42.75 1.75
657 697 4.282496 ACAGGACACTCCGAGAATCTAAT 58.718 43.478 1.33 0.00 42.75 1.73
658 698 3.698289 ACAGGACACTCCGAGAATCTAA 58.302 45.455 1.33 0.00 42.75 2.10
788 830 6.472887 ACTAGAAAAGCATAAACACCTAGCA 58.527 36.000 0.00 0.00 0.00 3.49
789 831 6.986904 ACTAGAAAAGCATAAACACCTAGC 57.013 37.500 0.00 0.00 0.00 3.42
808 850 8.433126 CCAACACGATAACTAGACAAAAACTAG 58.567 37.037 0.00 0.00 41.87 2.57
828 870 1.406539 CATAAGCCCAGCATCCAACAC 59.593 52.381 0.00 0.00 0.00 3.32
902 982 0.397535 CGTAAGCCCCCTACCCTACA 60.398 60.000 0.00 0.00 0.00 2.74
964 1046 7.039313 CCTGAAAATTAACAGGTATTAGCCC 57.961 40.000 17.50 0.00 45.82 5.19
1152 1237 4.275936 TGCAAGTTCAGTAAGAAAGAAGCC 59.724 41.667 0.00 0.00 38.13 4.35
1422 1515 5.636543 GCAAGCAGCTTCAATTCTACAAAAT 59.363 36.000 4.07 0.00 41.15 1.82
1543 1637 7.744087 AATACAGTGAAATTGTAGTTGCTCA 57.256 32.000 0.00 0.00 42.47 4.26
1790 2667 3.494573 GGGACGGAGGGAGTATGAAATTC 60.495 52.174 0.00 0.00 0.00 2.17
1798 2675 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
1799 2676 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
1800 2677 2.919228 CTTATTTTGGGACGGAGGGAG 58.081 52.381 0.00 0.00 0.00 4.30
1801 2678 1.064979 GCTTATTTTGGGACGGAGGGA 60.065 52.381 0.00 0.00 0.00 4.20
1802 2679 1.389555 GCTTATTTTGGGACGGAGGG 58.610 55.000 0.00 0.00 0.00 4.30
1803 2680 1.014352 CGCTTATTTTGGGACGGAGG 58.986 55.000 0.00 0.00 0.00 4.30
1804 2681 1.664151 GTCGCTTATTTTGGGACGGAG 59.336 52.381 0.00 0.00 37.57 4.63
1805 2682 1.729284 GTCGCTTATTTTGGGACGGA 58.271 50.000 0.00 0.00 37.57 4.69
1808 2685 3.751698 AGTTGAGTCGCTTATTTTGGGAC 59.248 43.478 0.00 0.00 44.37 4.46
1809 2686 4.015872 AGTTGAGTCGCTTATTTTGGGA 57.984 40.909 0.00 0.00 0.00 4.37
1810 2687 4.766404 AAGTTGAGTCGCTTATTTTGGG 57.234 40.909 0.00 0.00 0.00 4.12
1811 2688 5.519722 ACAAAGTTGAGTCGCTTATTTTGG 58.480 37.500 0.00 0.00 0.00 3.28
1812 2689 7.352739 AGTACAAAGTTGAGTCGCTTATTTTG 58.647 34.615 0.00 0.00 0.00 2.44
1813 2690 7.492352 AGTACAAAGTTGAGTCGCTTATTTT 57.508 32.000 0.00 0.00 0.00 1.82
1814 2691 7.117379 GGTAGTACAAAGTTGAGTCGCTTATTT 59.883 37.037 2.06 0.00 0.00 1.40
1815 2692 6.589139 GGTAGTACAAAGTTGAGTCGCTTATT 59.411 38.462 2.06 0.00 0.00 1.40
1816 2693 6.071503 AGGTAGTACAAAGTTGAGTCGCTTAT 60.072 38.462 2.06 0.00 0.00 1.73
1817 2694 5.242393 AGGTAGTACAAAGTTGAGTCGCTTA 59.758 40.000 2.06 0.00 0.00 3.09
1818 2695 4.038883 AGGTAGTACAAAGTTGAGTCGCTT 59.961 41.667 2.06 0.00 0.00 4.68
1819 2696 3.573110 AGGTAGTACAAAGTTGAGTCGCT 59.427 43.478 2.06 0.00 0.00 4.93
1820 2697 3.910648 AGGTAGTACAAAGTTGAGTCGC 58.089 45.455 2.06 0.00 0.00 5.19
1821 2698 7.144000 ACTAAAGGTAGTACAAAGTTGAGTCG 58.856 38.462 2.06 0.00 38.87 4.18
1864 2741 9.003145 CCCTCCATCCCAAAATATGTATCTATA 57.997 37.037 0.00 0.00 0.00 1.31
1865 2742 7.091811 CCCCTCCATCCCAAAATATGTATCTAT 60.092 40.741 0.00 0.00 0.00 1.98
1866 2743 6.217487 CCCCTCCATCCCAAAATATGTATCTA 59.783 42.308 0.00 0.00 0.00 1.98
1867 2744 5.015603 CCCCTCCATCCCAAAATATGTATCT 59.984 44.000 0.00 0.00 0.00 1.98
1868 2745 5.264395 CCCCTCCATCCCAAAATATGTATC 58.736 45.833 0.00 0.00 0.00 2.24
1869 2746 4.045846 CCCCCTCCATCCCAAAATATGTAT 59.954 45.833 0.00 0.00 0.00 2.29
1870 2747 3.401002 CCCCCTCCATCCCAAAATATGTA 59.599 47.826 0.00 0.00 0.00 2.29
1871 2748 2.179865 CCCCCTCCATCCCAAAATATGT 59.820 50.000 0.00 0.00 0.00 2.29
1872 2749 2.179865 ACCCCCTCCATCCCAAAATATG 59.820 50.000 0.00 0.00 0.00 1.78
1873 2750 2.524601 ACCCCCTCCATCCCAAAATAT 58.475 47.619 0.00 0.00 0.00 1.28
1874 2751 2.009186 ACCCCCTCCATCCCAAAATA 57.991 50.000 0.00 0.00 0.00 1.40
1875 2752 2.009186 TACCCCCTCCATCCCAAAAT 57.991 50.000 0.00 0.00 0.00 1.82
1876 2753 2.009186 ATACCCCCTCCATCCCAAAA 57.991 50.000 0.00 0.00 0.00 2.44
1877 2754 2.009186 AATACCCCCTCCATCCCAAA 57.991 50.000 0.00 0.00 0.00 3.28
1878 2755 2.920885 TAATACCCCCTCCATCCCAA 57.079 50.000 0.00 0.00 0.00 4.12
1879 2756 2.920885 TTAATACCCCCTCCATCCCA 57.079 50.000 0.00 0.00 0.00 4.37
1880 2757 4.856182 ACTAATTAATACCCCCTCCATCCC 59.144 45.833 0.00 0.00 0.00 3.85
1881 2758 5.550403 TCACTAATTAATACCCCCTCCATCC 59.450 44.000 0.00 0.00 0.00 3.51
1882 2759 6.697641 TCACTAATTAATACCCCCTCCATC 57.302 41.667 0.00 0.00 0.00 3.51
1883 2760 6.045577 CCTTCACTAATTAATACCCCCTCCAT 59.954 42.308 0.00 0.00 0.00 3.41
1884 2761 5.371472 CCTTCACTAATTAATACCCCCTCCA 59.629 44.000 0.00 0.00 0.00 3.86
1885 2762 5.609708 TCCTTCACTAATTAATACCCCCTCC 59.390 44.000 0.00 0.00 0.00 4.30
1886 2763 6.329460 ACTCCTTCACTAATTAATACCCCCTC 59.671 42.308 0.00 0.00 0.00 4.30
1887 2764 6.218053 ACTCCTTCACTAATTAATACCCCCT 58.782 40.000 0.00 0.00 0.00 4.79
1888 2765 6.511017 ACTCCTTCACTAATTAATACCCCC 57.489 41.667 0.00 0.00 0.00 5.40
2280 4376 6.039382 AGTTGTCTTTACAGAAACAATGGACC 59.961 38.462 0.00 0.00 36.83 4.46
2822 4967 2.831685 TAATCGCAGGACACTTGTGT 57.168 45.000 6.06 6.06 0.00 3.72
2897 5048 6.564328 AGAAGACAAAAAGGATGTGACAAAC 58.436 36.000 0.00 0.00 0.00 2.93
2975 5148 2.482864 GCCAAACAAACATTGTCCCAG 58.517 47.619 0.00 0.00 44.59 4.45
2981 5156 1.284657 TGTGCGCCAAACAAACATTG 58.715 45.000 4.18 0.00 0.00 2.82
2986 5161 1.532090 CGTACTTGTGCGCCAAACAAA 60.532 47.619 12.19 0.00 37.10 2.83
3005 5180 6.323203 AGGAATGGAATTATCATGAAAGCG 57.677 37.500 0.00 0.00 36.07 4.68
3013 5188 8.281531 ACAAGTAATGGAGGAATGGAATTATCA 58.718 33.333 0.00 0.00 36.07 2.15
3155 5332 2.039418 ACCTTTCCTTGTTTCAAGGCC 58.961 47.619 19.89 0.00 39.68 5.19
3386 5578 4.620723 TCCCTTAGTGCCTGATTCTTAGA 58.379 43.478 0.00 0.00 0.00 2.10
3457 5649 2.928757 CAGCTTCTCGAATGTCTCCTTG 59.071 50.000 0.00 0.00 0.00 3.61
3469 5661 0.179161 CGTGAGGTACCAGCTTCTCG 60.179 60.000 15.94 11.38 0.00 4.04
3640 5837 1.523758 CTCGGACCTTCCCACTTTTG 58.476 55.000 0.00 0.00 31.13 2.44
3688 5885 4.038522 ACACCAATCTGACCTCTATCATCG 59.961 45.833 0.00 0.00 0.00 3.84
3837 6050 7.782644 CCAACTCCATAACCCCTTTCAATAATA 59.217 37.037 0.00 0.00 0.00 0.98
4019 6333 7.699878 AGAAACCTTATTAGGACCAAGTGAAT 58.300 34.615 4.40 0.00 45.05 2.57
4156 6470 3.340814 AACAAGCTCACCAGATACCAG 57.659 47.619 0.00 0.00 0.00 4.00
4212 6526 6.299805 ACCATAAGTCTCAGAATGCTGTTA 57.700 37.500 0.00 0.00 42.84 2.41
4221 6535 7.103641 GTGTTATTCCAACCATAAGTCTCAGA 58.896 38.462 0.00 0.00 0.00 3.27
4359 6673 5.537674 ACAAATGAAAACCAGAGCTGAGAAT 59.462 36.000 0.00 0.00 0.00 2.40
4430 6820 3.195396 GCCCTCAACAAATTCATAAGGCA 59.805 43.478 0.00 0.00 36.67 4.75
4515 6905 7.328493 GTCCATTTTCAGGTGCAAGTTTATTAC 59.672 37.037 0.00 0.00 0.00 1.89
4575 7059 3.594134 AGACAACAGCATAACTCAGAGC 58.406 45.455 0.00 0.00 0.00 4.09
4588 7072 8.589629 CAAGTGAAATTTCAGAAAAGACAACAG 58.410 33.333 21.05 0.00 37.98 3.16
4621 7105 7.849804 TGTCTCTGCTTTTGATCCTAATAAC 57.150 36.000 0.00 0.00 0.00 1.89
4785 7269 0.804989 CCAAGAAAAGCGAGCCGATT 59.195 50.000 0.00 0.00 36.95 3.34
4948 7432 1.002069 TGGGACGGAGGGAGTACTTA 58.998 55.000 0.00 0.00 0.00 2.24
4961 7445 2.073816 AGCGACAAGTAATTTGGGACG 58.926 47.619 0.00 0.00 41.25 4.79
4979 7463 3.555917 GCTAGATGCATCCATTTGAGC 57.444 47.619 23.06 16.72 42.31 4.26
5003 7487 9.658799 ATGAATATATCTAGCACGCACTAAAAT 57.341 29.630 0.00 0.00 0.00 1.82
5004 7488 9.489084 AATGAATATATCTAGCACGCACTAAAA 57.511 29.630 0.00 0.00 0.00 1.52
5005 7489 9.489084 AAATGAATATATCTAGCACGCACTAAA 57.511 29.630 0.00 0.00 0.00 1.85
5006 7490 8.925700 CAAATGAATATATCTAGCACGCACTAA 58.074 33.333 0.00 0.00 0.00 2.24
5007 7491 8.303876 TCAAATGAATATATCTAGCACGCACTA 58.696 33.333 0.00 0.00 0.00 2.74
5008 7492 7.154656 TCAAATGAATATATCTAGCACGCACT 58.845 34.615 0.00 0.00 0.00 4.40
5009 7493 7.116948 ACTCAAATGAATATATCTAGCACGCAC 59.883 37.037 0.00 0.00 0.00 5.34
5010 7494 7.116805 CACTCAAATGAATATATCTAGCACGCA 59.883 37.037 0.00 0.00 0.00 5.24
5011 7495 7.329471 TCACTCAAATGAATATATCTAGCACGC 59.671 37.037 0.00 0.00 0.00 5.34
5012 7496 8.642885 GTCACTCAAATGAATATATCTAGCACG 58.357 37.037 0.00 0.00 0.00 5.34
5013 7497 9.481340 TGTCACTCAAATGAATATATCTAGCAC 57.519 33.333 0.00 0.00 0.00 4.40
5023 7507 8.664798 CGGAATTACTTGTCACTCAAATGAATA 58.335 33.333 0.00 0.00 35.48 1.75
5024 7508 7.362056 CCGGAATTACTTGTCACTCAAATGAAT 60.362 37.037 0.00 0.00 35.48 2.57
5025 7509 6.072728 CCGGAATTACTTGTCACTCAAATGAA 60.073 38.462 0.00 0.00 35.48 2.57
5026 7510 5.411361 CCGGAATTACTTGTCACTCAAATGA 59.589 40.000 0.00 0.00 35.48 2.57
5027 7511 5.411361 TCCGGAATTACTTGTCACTCAAATG 59.589 40.000 0.00 0.00 35.48 2.32
5028 7512 5.411669 GTCCGGAATTACTTGTCACTCAAAT 59.588 40.000 5.23 0.00 35.48 2.32
5029 7513 4.753107 GTCCGGAATTACTTGTCACTCAAA 59.247 41.667 5.23 0.00 35.48 2.69
5030 7514 4.312443 GTCCGGAATTACTTGTCACTCAA 58.688 43.478 5.23 0.00 34.61 3.02
5031 7515 3.613193 CGTCCGGAATTACTTGTCACTCA 60.613 47.826 5.23 0.00 0.00 3.41
5032 7516 2.921754 CGTCCGGAATTACTTGTCACTC 59.078 50.000 5.23 0.00 0.00 3.51
5033 7517 2.353406 CCGTCCGGAATTACTTGTCACT 60.353 50.000 5.23 0.00 37.50 3.41
5034 7518 1.997606 CCGTCCGGAATTACTTGTCAC 59.002 52.381 5.23 0.00 37.50 3.67
5035 7519 1.894466 TCCGTCCGGAATTACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
5036 7520 2.165030 TCTCCGTCCGGAATTACTTGTC 59.835 50.000 5.23 0.00 44.66 3.18
5039 7523 4.213513 AGTATCTCCGTCCGGAATTACTT 58.786 43.478 5.23 0.00 44.66 2.24
5048 7532 1.521580 GGAGGTAGTATCTCCGTCCG 58.478 60.000 13.81 0.00 41.01 4.79
5057 7541 2.842645 AACCAGGACGGAGGTAGTAT 57.157 50.000 0.00 0.00 37.07 2.12
5058 7542 2.610438 AAACCAGGACGGAGGTAGTA 57.390 50.000 0.00 0.00 37.07 1.82
5059 7543 2.610438 TAAACCAGGACGGAGGTAGT 57.390 50.000 0.00 0.00 37.07 2.73
5060 7544 3.431766 CCATTAAACCAGGACGGAGGTAG 60.432 52.174 0.00 0.00 37.07 3.18
5061 7545 2.502538 CCATTAAACCAGGACGGAGGTA 59.497 50.000 0.00 0.00 37.07 3.08
5062 7546 1.280998 CCATTAAACCAGGACGGAGGT 59.719 52.381 0.00 0.00 40.61 3.85
5063 7547 1.280998 ACCATTAAACCAGGACGGAGG 59.719 52.381 0.00 0.00 38.63 4.30
5064 7548 2.629051 GACCATTAAACCAGGACGGAG 58.371 52.381 0.00 0.00 38.63 4.63
5065 7549 1.279846 GGACCATTAAACCAGGACGGA 59.720 52.381 0.00 0.00 38.63 4.69
5066 7550 1.680860 GGGACCATTAAACCAGGACGG 60.681 57.143 0.00 0.00 42.50 4.79
5067 7551 1.746470 GGGACCATTAAACCAGGACG 58.254 55.000 0.00 0.00 0.00 4.79
5068 7552 1.003928 ACGGGACCATTAAACCAGGAC 59.996 52.381 0.00 0.00 0.00 3.85
5069 7553 1.364269 ACGGGACCATTAAACCAGGA 58.636 50.000 0.00 0.00 0.00 3.86
5070 7554 2.089201 GAACGGGACCATTAAACCAGG 58.911 52.381 0.00 0.00 0.00 4.45
5071 7555 1.735571 CGAACGGGACCATTAAACCAG 59.264 52.381 0.00 0.00 0.00 4.00
5072 7556 1.072015 ACGAACGGGACCATTAAACCA 59.928 47.619 0.00 0.00 0.00 3.67
5073 7557 1.812235 ACGAACGGGACCATTAAACC 58.188 50.000 0.00 0.00 0.00 3.27
5074 7558 5.550232 AAATACGAACGGGACCATTAAAC 57.450 39.130 0.00 0.00 0.00 2.01
5075 7559 5.472820 ACAAAATACGAACGGGACCATTAAA 59.527 36.000 0.00 0.00 0.00 1.52
5076 7560 5.002516 ACAAAATACGAACGGGACCATTAA 58.997 37.500 0.00 0.00 0.00 1.40
5077 7561 4.392445 CACAAAATACGAACGGGACCATTA 59.608 41.667 0.00 0.00 0.00 1.90
5078 7562 3.189702 CACAAAATACGAACGGGACCATT 59.810 43.478 0.00 0.00 0.00 3.16
5079 7563 2.745281 CACAAAATACGAACGGGACCAT 59.255 45.455 0.00 0.00 0.00 3.55
5080 7564 2.144730 CACAAAATACGAACGGGACCA 58.855 47.619 0.00 0.00 0.00 4.02
5081 7565 1.135888 GCACAAAATACGAACGGGACC 60.136 52.381 0.00 0.00 0.00 4.46
5082 7566 1.135888 GGCACAAAATACGAACGGGAC 60.136 52.381 0.00 0.00 0.00 4.46
5083 7567 1.158434 GGCACAAAATACGAACGGGA 58.842 50.000 0.00 0.00 0.00 5.14
5084 7568 0.875728 TGGCACAAAATACGAACGGG 59.124 50.000 0.00 0.00 31.92 5.28
5097 7581 6.418057 AATCTAAGGTGAAAATTTGGCACA 57.582 33.333 19.84 5.53 34.33 4.57
5098 7582 8.708742 GTTAAATCTAAGGTGAAAATTTGGCAC 58.291 33.333 13.32 13.32 0.00 5.01
5099 7583 8.646900 AGTTAAATCTAAGGTGAAAATTTGGCA 58.353 29.630 0.00 0.00 0.00 4.92
5134 7618 5.232838 GCTATTTTTGGTGACATGCATTAGC 59.767 40.000 0.00 0.00 42.32 3.09
5135 7619 6.331845 TGCTATTTTTGGTGACATGCATTAG 58.668 36.000 0.00 0.00 42.32 1.73
5136 7620 6.278172 TGCTATTTTTGGTGACATGCATTA 57.722 33.333 0.00 0.00 42.32 1.90
5137 7621 5.149973 TGCTATTTTTGGTGACATGCATT 57.850 34.783 0.00 0.00 42.32 3.56
5138 7622 4.804868 TGCTATTTTTGGTGACATGCAT 57.195 36.364 0.00 0.00 42.32 3.96
5139 7623 4.220163 TGATGCTATTTTTGGTGACATGCA 59.780 37.500 0.00 0.00 42.32 3.96
5140 7624 4.746729 TGATGCTATTTTTGGTGACATGC 58.253 39.130 0.00 0.00 42.32 4.06
5141 7625 7.036829 TCAATGATGCTATTTTTGGTGACATG 58.963 34.615 0.00 0.00 42.32 3.21
5142 7626 7.172868 TCAATGATGCTATTTTTGGTGACAT 57.827 32.000 0.00 0.00 42.32 3.06
5143 7627 6.587206 TCAATGATGCTATTTTTGGTGACA 57.413 33.333 0.00 0.00 39.83 3.58
5144 7628 7.887996 TTTCAATGATGCTATTTTTGGTGAC 57.112 32.000 0.00 0.00 0.00 3.67
5145 7629 8.149647 AGTTTTCAATGATGCTATTTTTGGTGA 58.850 29.630 0.00 0.00 0.00 4.02
5146 7630 8.314143 AGTTTTCAATGATGCTATTTTTGGTG 57.686 30.769 0.00 0.00 0.00 4.17
5183 7667 9.486123 TGACCAAAAATTATATCCTTGGATTCA 57.514 29.630 7.52 0.00 39.12 2.57
5184 7668 9.750125 GTGACCAAAAATTATATCCTTGGATTC 57.250 33.333 7.52 0.00 39.12 2.52
5185 7669 9.265862 TGTGACCAAAAATTATATCCTTGGATT 57.734 29.630 7.52 0.00 39.12 3.01
5186 7670 8.837099 TGTGACCAAAAATTATATCCTTGGAT 57.163 30.769 7.37 7.37 39.12 3.41
5187 7671 8.694540 CATGTGACCAAAAATTATATCCTTGGA 58.305 33.333 6.16 0.00 39.12 3.53
5188 7672 7.439056 GCATGTGACCAAAAATTATATCCTTGG 59.561 37.037 0.00 0.00 41.91 3.61
5189 7673 7.980662 TGCATGTGACCAAAAATTATATCCTTG 59.019 33.333 0.00 0.00 0.00 3.61
5190 7674 8.076910 TGCATGTGACCAAAAATTATATCCTT 57.923 30.769 0.00 0.00 0.00 3.36
5191 7675 7.658525 TGCATGTGACCAAAAATTATATCCT 57.341 32.000 0.00 0.00 0.00 3.24
5192 7676 8.891671 AATGCATGTGACCAAAAATTATATCC 57.108 30.769 0.00 0.00 0.00 2.59
5193 7677 9.531942 TGAATGCATGTGACCAAAAATTATATC 57.468 29.630 0.00 0.00 0.00 1.63
5197 7681 9.531942 GATATGAATGCATGTGACCAAAAATTA 57.468 29.630 0.00 0.00 35.94 1.40
5198 7682 8.262227 AGATATGAATGCATGTGACCAAAAATT 58.738 29.630 0.00 0.00 35.94 1.82
5199 7683 7.788026 AGATATGAATGCATGTGACCAAAAAT 58.212 30.769 0.00 0.00 35.94 1.82
5200 7684 7.172868 AGATATGAATGCATGTGACCAAAAA 57.827 32.000 0.00 0.00 35.94 1.94
5201 7685 6.778834 AGATATGAATGCATGTGACCAAAA 57.221 33.333 0.00 0.00 35.94 2.44
5202 7686 6.778834 AAGATATGAATGCATGTGACCAAA 57.221 33.333 0.00 0.00 35.94 3.28
5203 7687 8.467963 AATAAGATATGAATGCATGTGACCAA 57.532 30.769 0.00 0.00 35.94 3.67
5204 7688 9.223099 CTAATAAGATATGAATGCATGTGACCA 57.777 33.333 0.00 0.00 35.94 4.02
5205 7689 9.224267 ACTAATAAGATATGAATGCATGTGACC 57.776 33.333 0.00 0.00 35.94 4.02
5238 7722 9.706691 TGTATTTTGTGTAAAACTTTGACCAAA 57.293 25.926 0.00 0.00 38.50 3.28
5239 7723 9.706691 TTGTATTTTGTGTAAAACTTTGACCAA 57.293 25.926 0.00 0.00 38.50 3.67
5240 7724 9.706691 TTTGTATTTTGTGTAAAACTTTGACCA 57.293 25.926 0.00 0.00 38.50 4.02
5243 7727 9.372369 CCCTTTGTATTTTGTGTAAAACTTTGA 57.628 29.630 0.00 0.00 38.50 2.69
5244 7728 8.608317 CCCCTTTGTATTTTGTGTAAAACTTTG 58.392 33.333 0.00 0.00 38.50 2.77
5245 7729 8.541234 TCCCCTTTGTATTTTGTGTAAAACTTT 58.459 29.630 0.00 0.00 38.50 2.66
5246 7730 7.982919 GTCCCCTTTGTATTTTGTGTAAAACTT 59.017 33.333 0.00 0.00 38.50 2.66
5247 7731 7.418139 GGTCCCCTTTGTATTTTGTGTAAAACT 60.418 37.037 0.00 0.00 38.50 2.66
5248 7732 6.702723 GGTCCCCTTTGTATTTTGTGTAAAAC 59.297 38.462 0.00 0.00 38.50 2.43
5249 7733 6.383147 TGGTCCCCTTTGTATTTTGTGTAAAA 59.617 34.615 0.00 0.00 39.86 1.52
5250 7734 5.897824 TGGTCCCCTTTGTATTTTGTGTAAA 59.102 36.000 0.00 0.00 0.00 2.01
5251 7735 5.455872 TGGTCCCCTTTGTATTTTGTGTAA 58.544 37.500 0.00 0.00 0.00 2.41
5252 7736 5.063017 TGGTCCCCTTTGTATTTTGTGTA 57.937 39.130 0.00 0.00 0.00 2.90
5253 7737 3.917300 TGGTCCCCTTTGTATTTTGTGT 58.083 40.909 0.00 0.00 0.00 3.72
5254 7738 4.946478 TTGGTCCCCTTTGTATTTTGTG 57.054 40.909 0.00 0.00 0.00 3.33
5255 7739 7.446769 GTTTATTGGTCCCCTTTGTATTTTGT 58.553 34.615 0.00 0.00 0.00 2.83
5256 7740 6.876789 GGTTTATTGGTCCCCTTTGTATTTTG 59.123 38.462 0.00 0.00 0.00 2.44
5257 7741 6.559157 TGGTTTATTGGTCCCCTTTGTATTTT 59.441 34.615 0.00 0.00 0.00 1.82
5258 7742 6.085416 TGGTTTATTGGTCCCCTTTGTATTT 58.915 36.000 0.00 0.00 0.00 1.40
5259 7743 5.656420 TGGTTTATTGGTCCCCTTTGTATT 58.344 37.500 0.00 0.00 0.00 1.89
5260 7744 5.269189 CTGGTTTATTGGTCCCCTTTGTAT 58.731 41.667 0.00 0.00 0.00 2.29
5261 7745 4.509482 CCTGGTTTATTGGTCCCCTTTGTA 60.509 45.833 0.00 0.00 0.00 2.41
5262 7746 3.506398 CTGGTTTATTGGTCCCCTTTGT 58.494 45.455 0.00 0.00 0.00 2.83
5263 7747 2.831526 CCTGGTTTATTGGTCCCCTTTG 59.168 50.000 0.00 0.00 0.00 2.77
5264 7748 2.725227 TCCTGGTTTATTGGTCCCCTTT 59.275 45.455 0.00 0.00 0.00 3.11
5265 7749 2.364190 TCCTGGTTTATTGGTCCCCTT 58.636 47.619 0.00 0.00 0.00 3.95
5266 7750 2.068831 TCCTGGTTTATTGGTCCCCT 57.931 50.000 0.00 0.00 0.00 4.79
5267 7751 2.666317 CATCCTGGTTTATTGGTCCCC 58.334 52.381 0.00 0.00 0.00 4.81
5268 7752 2.243736 TCCATCCTGGTTTATTGGTCCC 59.756 50.000 0.00 0.00 39.03 4.46
5269 7753 3.555966 CTCCATCCTGGTTTATTGGTCC 58.444 50.000 0.00 0.00 39.03 4.46
5270 7754 3.053619 ACCTCCATCCTGGTTTATTGGTC 60.054 47.826 0.00 0.00 39.03 4.02
5271 7755 2.926329 ACCTCCATCCTGGTTTATTGGT 59.074 45.455 0.00 0.00 39.03 3.67
5272 7756 3.669939 ACCTCCATCCTGGTTTATTGG 57.330 47.619 0.00 0.00 39.03 3.16
5273 7757 5.373812 ACTACCTCCATCCTGGTTTATTG 57.626 43.478 0.00 0.00 39.03 1.90
5274 7758 6.210522 ACTACTACCTCCATCCTGGTTTATT 58.789 40.000 0.00 0.00 39.03 1.40
5275 7759 5.789535 ACTACTACCTCCATCCTGGTTTAT 58.210 41.667 0.00 0.00 39.03 1.40
5276 7760 5.216665 ACTACTACCTCCATCCTGGTTTA 57.783 43.478 0.00 0.00 39.03 2.01
5277 7761 4.076175 ACTACTACCTCCATCCTGGTTT 57.924 45.455 0.00 0.00 39.03 3.27
5278 7762 3.778622 ACTACTACCTCCATCCTGGTT 57.221 47.619 0.00 0.00 39.03 3.67
5279 7763 3.530564 TGTACTACTACCTCCATCCTGGT 59.469 47.826 0.00 0.00 39.03 4.00
5280 7764 4.180377 TGTACTACTACCTCCATCCTGG 57.820 50.000 0.00 0.00 39.43 4.45
5281 7765 8.307483 CAATAATGTACTACTACCTCCATCCTG 58.693 40.741 0.00 0.00 0.00 3.86
5282 7766 8.011290 ACAATAATGTACTACTACCTCCATCCT 58.989 37.037 0.00 0.00 38.24 3.24
5283 7767 8.191534 ACAATAATGTACTACTACCTCCATCC 57.808 38.462 0.00 0.00 38.24 3.51
5286 7770 8.917088 GGTAACAATAATGTACTACTACCTCCA 58.083 37.037 0.00 0.00 39.40 3.86
5287 7771 8.363390 GGGTAACAATAATGTACTACTACCTCC 58.637 40.741 8.11 0.00 39.40 4.30
5288 7772 9.140874 AGGGTAACAATAATGTACTACTACCTC 57.859 37.037 8.11 1.37 39.40 3.85
5333 7817 4.410099 AGAAGCAGATTGGAAATGTGGAA 58.590 39.130 0.09 0.00 0.00 3.53
5334 7818 4.038271 AGAAGCAGATTGGAAATGTGGA 57.962 40.909 0.09 0.00 0.00 4.02
5594 8102 2.378038 TGCCCTAATGCTTTCATGGTC 58.622 47.619 0.00 0.00 32.23 4.02
5596 8104 2.960384 TCATGCCCTAATGCTTTCATGG 59.040 45.455 10.12 2.62 33.95 3.66
5645 8158 7.112122 TGACAGCCACTTAATTGATGATAACT 58.888 34.615 0.00 0.00 0.00 2.24
5687 8200 6.934056 TCACAATCATTACAATTTTCCCCAG 58.066 36.000 0.00 0.00 0.00 4.45
5705 8218 5.440610 GTGATGGGGAACTAGAATCACAAT 58.559 41.667 0.00 0.00 44.15 2.71
5832 8345 1.141019 GTAGCGATGACGGGAAGCA 59.859 57.895 0.00 0.00 40.15 3.91
5833 8346 0.872021 CTGTAGCGATGACGGGAAGC 60.872 60.000 0.00 0.00 40.15 3.86
5836 8349 1.977056 ATACTGTAGCGATGACGGGA 58.023 50.000 0.00 0.00 40.15 5.14
5845 8358 5.524281 TGAACAGAGAGAGTATACTGTAGCG 59.476 44.000 10.90 0.00 41.73 4.26
5886 8399 9.586435 CGTATGCAGTCTATATTGAAATATCCA 57.414 33.333 0.00 0.00 33.78 3.41
5887 8400 9.035607 CCGTATGCAGTCTATATTGAAATATCC 57.964 37.037 0.00 0.00 33.78 2.59
5888 8401 9.803315 TCCGTATGCAGTCTATATTGAAATATC 57.197 33.333 0.00 0.00 33.78 1.63
5891 8404 8.939929 CAATCCGTATGCAGTCTATATTGAAAT 58.060 33.333 0.00 0.00 0.00 2.17
5892 8405 7.387673 CCAATCCGTATGCAGTCTATATTGAAA 59.612 37.037 10.36 0.00 0.00 2.69
5893 8406 6.873605 CCAATCCGTATGCAGTCTATATTGAA 59.126 38.462 10.36 0.00 0.00 2.69
5894 8407 6.210584 TCCAATCCGTATGCAGTCTATATTGA 59.789 38.462 10.36 0.00 0.00 2.57
5895 8408 6.398095 TCCAATCCGTATGCAGTCTATATTG 58.602 40.000 0.00 0.00 0.00 1.90
5896 8409 6.605471 TCCAATCCGTATGCAGTCTATATT 57.395 37.500 0.00 0.00 0.00 1.28
5897 8410 6.398918 GTTCCAATCCGTATGCAGTCTATAT 58.601 40.000 0.00 0.00 0.00 0.86
5898 8411 5.564063 CGTTCCAATCCGTATGCAGTCTATA 60.564 44.000 0.00 0.00 0.00 1.31
5899 8412 4.632153 GTTCCAATCCGTATGCAGTCTAT 58.368 43.478 0.00 0.00 0.00 1.98
5900 8413 3.490249 CGTTCCAATCCGTATGCAGTCTA 60.490 47.826 0.00 0.00 0.00 2.59
5901 8414 2.738643 CGTTCCAATCCGTATGCAGTCT 60.739 50.000 0.00 0.00 0.00 3.24
5902 8415 1.593006 CGTTCCAATCCGTATGCAGTC 59.407 52.381 0.00 0.00 0.00 3.51
5903 8416 1.206132 TCGTTCCAATCCGTATGCAGT 59.794 47.619 0.00 0.00 0.00 4.40
5904 8417 1.860950 CTCGTTCCAATCCGTATGCAG 59.139 52.381 0.00 0.00 0.00 4.41
5905 8418 1.206132 ACTCGTTCCAATCCGTATGCA 59.794 47.619 0.00 0.00 0.00 3.96
5906 8419 1.593006 CACTCGTTCCAATCCGTATGC 59.407 52.381 0.00 0.00 0.00 3.14
5907 8420 3.159353 TCACTCGTTCCAATCCGTATG 57.841 47.619 0.00 0.00 0.00 2.39
5908 8421 3.518590 GTTCACTCGTTCCAATCCGTAT 58.481 45.455 0.00 0.00 0.00 3.06
5909 8422 2.669113 CGTTCACTCGTTCCAATCCGTA 60.669 50.000 0.00 0.00 0.00 4.02
5910 8423 1.792006 GTTCACTCGTTCCAATCCGT 58.208 50.000 0.00 0.00 0.00 4.69
5911 8424 0.713883 CGTTCACTCGTTCCAATCCG 59.286 55.000 0.00 0.00 0.00 4.18
5912 8425 0.442699 GCGTTCACTCGTTCCAATCC 59.557 55.000 0.00 0.00 0.00 3.01
5913 8426 1.136336 GTGCGTTCACTCGTTCCAATC 60.136 52.381 0.00 0.00 40.03 2.67
5914 8427 0.865769 GTGCGTTCACTCGTTCCAAT 59.134 50.000 0.00 0.00 40.03 3.16
5915 8428 0.460459 TGTGCGTTCACTCGTTCCAA 60.460 50.000 0.00 0.00 43.49 3.53
5916 8429 1.142097 TGTGCGTTCACTCGTTCCA 59.858 52.632 0.00 0.00 43.49 3.53
5917 8430 1.149361 TGTGTGCGTTCACTCGTTCC 61.149 55.000 11.83 0.00 43.49 3.62
5918 8431 0.043310 GTGTGTGCGTTCACTCGTTC 60.043 55.000 11.83 0.00 43.49 3.95
5919 8432 0.459585 AGTGTGTGCGTTCACTCGTT 60.460 50.000 11.83 0.00 43.49 3.85
5920 8433 0.382873 TAGTGTGTGCGTTCACTCGT 59.617 50.000 9.99 2.10 42.77 4.18
5921 8434 1.053048 CTAGTGTGTGCGTTCACTCG 58.947 55.000 9.99 2.50 42.77 4.18
5922 8435 2.417339 TCTAGTGTGTGCGTTCACTC 57.583 50.000 9.99 8.98 42.77 3.51
5923 8436 2.882927 TTCTAGTGTGTGCGTTCACT 57.117 45.000 11.12 11.12 45.21 3.41
5924 8437 2.411547 GCATTCTAGTGTGTGCGTTCAC 60.412 50.000 5.43 5.43 43.40 3.18
5925 8438 1.798223 GCATTCTAGTGTGTGCGTTCA 59.202 47.619 0.00 0.00 0.00 3.18
5926 8439 2.510615 GCATTCTAGTGTGTGCGTTC 57.489 50.000 0.00 0.00 0.00 3.95
5930 8443 1.714794 AGACGCATTCTAGTGTGTGC 58.285 50.000 4.42 3.48 42.45 4.57
5931 8444 7.360361 TGTATATAGACGCATTCTAGTGTGTG 58.640 38.462 4.42 6.69 42.45 3.82
5932 8445 7.506328 TGTATATAGACGCATTCTAGTGTGT 57.494 36.000 0.00 0.00 44.85 3.72
5933 8446 8.972262 AATGTATATAGACGCATTCTAGTGTG 57.028 34.615 0.00 0.00 40.33 3.82
5934 8447 8.793592 TGAATGTATATAGACGCATTCTAGTGT 58.206 33.333 17.78 0.00 44.26 3.55
5935 8448 9.626045 TTGAATGTATATAGACGCATTCTAGTG 57.374 33.333 17.78 0.00 44.26 2.74
5939 8452 9.710900 TGAATTGAATGTATATAGACGCATTCT 57.289 29.630 17.78 5.28 44.26 2.40
5940 8453 9.964253 CTGAATTGAATGTATATAGACGCATTC 57.036 33.333 13.21 13.21 44.22 2.67
5941 8454 9.710900 TCTGAATTGAATGTATATAGACGCATT 57.289 29.630 0.00 0.00 34.67 3.56
5942 8455 9.710900 TTCTGAATTGAATGTATATAGACGCAT 57.289 29.630 0.00 0.00 0.00 4.73
5943 8456 8.978539 GTTCTGAATTGAATGTATATAGACGCA 58.021 33.333 0.00 0.00 0.00 5.24
5944 8457 8.978539 TGTTCTGAATTGAATGTATATAGACGC 58.021 33.333 0.00 0.00 0.00 5.19
5958 8471 8.668353 GCACTGTTATAAGATGTTCTGAATTGA 58.332 33.333 0.00 0.00 0.00 2.57
5959 8472 8.453320 TGCACTGTTATAAGATGTTCTGAATTG 58.547 33.333 0.00 0.00 0.00 2.32
5960 8473 8.454106 GTGCACTGTTATAAGATGTTCTGAATT 58.546 33.333 10.32 0.00 0.00 2.17
5961 8474 7.201556 CGTGCACTGTTATAAGATGTTCTGAAT 60.202 37.037 16.19 0.00 0.00 2.57
5962 8475 6.090763 CGTGCACTGTTATAAGATGTTCTGAA 59.909 38.462 16.19 0.00 0.00 3.02
5963 8476 5.576774 CGTGCACTGTTATAAGATGTTCTGA 59.423 40.000 16.19 0.00 0.00 3.27
5964 8477 5.220472 CCGTGCACTGTTATAAGATGTTCTG 60.220 44.000 16.19 0.00 0.00 3.02
5965 8478 4.870426 CCGTGCACTGTTATAAGATGTTCT 59.130 41.667 16.19 0.00 0.00 3.01
5966 8479 4.868171 TCCGTGCACTGTTATAAGATGTTC 59.132 41.667 16.19 0.00 0.00 3.18
5967 8480 4.827692 TCCGTGCACTGTTATAAGATGTT 58.172 39.130 16.19 0.00 0.00 2.71
5968 8481 4.081642 ACTCCGTGCACTGTTATAAGATGT 60.082 41.667 16.19 0.00 0.00 3.06
5969 8482 4.268644 CACTCCGTGCACTGTTATAAGATG 59.731 45.833 16.19 0.00 0.00 2.90
5978 8491 1.068083 CACTCACTCCGTGCACTGT 59.932 57.895 16.19 8.18 32.98 3.55
5979 8492 3.942500 CACTCACTCCGTGCACTG 58.057 61.111 16.19 8.86 32.98 3.66
5984 8497 3.452755 TTATATGGCACTCACTCCGTG 57.547 47.619 0.00 0.00 35.53 4.94
6027 8540 9.896645 AACAGAAGATAGACATATCAAACACAT 57.103 29.630 0.00 0.00 40.36 3.21
6050 8563 0.953727 GCTGGTGCTGTGAATCAACA 59.046 50.000 0.00 0.00 36.03 3.33
6051 8564 0.242017 GGCTGGTGCTGTGAATCAAC 59.758 55.000 0.00 0.00 39.59 3.18
6052 8565 0.178995 TGGCTGGTGCTGTGAATCAA 60.179 50.000 0.00 0.00 39.59 2.57
6053 8566 0.890542 GTGGCTGGTGCTGTGAATCA 60.891 55.000 0.00 0.00 39.59 2.57
6054 8567 0.607489 AGTGGCTGGTGCTGTGAATC 60.607 55.000 0.00 0.00 39.59 2.52
6055 8568 0.892358 CAGTGGCTGGTGCTGTGAAT 60.892 55.000 0.00 0.00 39.59 2.57
6056 8569 1.526686 CAGTGGCTGGTGCTGTGAA 60.527 57.895 0.00 0.00 39.59 3.18
6057 8570 2.111669 CAGTGGCTGGTGCTGTGA 59.888 61.111 0.00 0.00 39.59 3.58
6069 8582 4.729918 GCCTGGCAGGGACAGTGG 62.730 72.222 33.43 8.27 36.87 4.00
6077 8590 2.124819 CTAGTGCAGCCTGGCAGG 60.125 66.667 29.44 29.44 45.96 4.85
6080 8593 2.111582 GCTTCTAGTGCAGCCTGGC 61.112 63.158 11.65 11.65 0.00 4.85
6084 8597 2.315925 TGTATGCTTCTAGTGCAGCC 57.684 50.000 15.66 10.35 44.04 4.85
6101 8614 0.109458 CAGCGCATCAAAGCACATGT 60.109 50.000 11.47 0.00 35.48 3.21
6102 8615 0.109458 ACAGCGCATCAAAGCACATG 60.109 50.000 11.47 0.00 35.48 3.21
6103 8616 0.599558 AACAGCGCATCAAAGCACAT 59.400 45.000 11.47 0.00 35.48 3.21
6104 8617 0.385029 AAACAGCGCATCAAAGCACA 59.615 45.000 11.47 0.00 35.48 4.57
6112 8625 2.997485 AAAGGAGAAAACAGCGCATC 57.003 45.000 11.47 0.00 0.00 3.91
6113 8626 4.437390 CGATTAAAGGAGAAAACAGCGCAT 60.437 41.667 11.47 0.00 0.00 4.73
6114 8627 3.120338 CGATTAAAGGAGAAAACAGCGCA 60.120 43.478 11.47 0.00 0.00 6.09
6119 8632 6.687081 ACACAACGATTAAAGGAGAAAACA 57.313 33.333 0.00 0.00 0.00 2.83
6120 8633 7.486870 ACAAACACAACGATTAAAGGAGAAAAC 59.513 33.333 0.00 0.00 0.00 2.43
6127 8640 8.568732 AATACAACAAACACAACGATTAAAGG 57.431 30.769 0.00 0.00 0.00 3.11
6205 8718 2.101415 GGCCTTCCTGCATACCATTTTC 59.899 50.000 0.00 0.00 0.00 2.29
6206 8719 2.110578 GGCCTTCCTGCATACCATTTT 58.889 47.619 0.00 0.00 0.00 1.82
6207 8720 1.689258 GGGCCTTCCTGCATACCATTT 60.689 52.381 0.84 0.00 0.00 2.32
6214 8728 0.613012 GAAACTGGGCCTTCCTGCAT 60.613 55.000 4.53 0.00 37.94 3.96
6227 8741 6.317088 ACAGATAAATTGCATCACGAAACTG 58.683 36.000 0.00 0.00 0.00 3.16
6228 8742 6.500684 ACAGATAAATTGCATCACGAAACT 57.499 33.333 0.00 0.00 0.00 2.66
6233 8747 7.754924 AGGTTAAAACAGATAAATTGCATCACG 59.245 33.333 0.00 0.00 0.00 4.35
6262 8776 8.506437 GTGACAGAAATCAAAATAGACATGTCA 58.494 33.333 27.02 13.67 40.52 3.58
6274 8788 8.684386 TGGTATAAGTTGTGACAGAAATCAAA 57.316 30.769 0.00 0.00 0.00 2.69
6279 8793 5.414454 GGCATGGTATAAGTTGTGACAGAAA 59.586 40.000 0.00 0.00 0.00 2.52
6284 8798 6.113411 ACTAAGGCATGGTATAAGTTGTGAC 58.887 40.000 0.00 0.00 0.00 3.67
6285 8799 6.308015 ACTAAGGCATGGTATAAGTTGTGA 57.692 37.500 0.00 0.00 0.00 3.58
6286 8800 6.785191 CAACTAAGGCATGGTATAAGTTGTG 58.215 40.000 0.00 0.00 38.21 3.33
6287 8801 6.481643 ACAACTAAGGCATGGTATAAGTTGT 58.518 36.000 11.10 11.10 46.35 3.32
6288 8802 7.391148 AACAACTAAGGCATGGTATAAGTTG 57.609 36.000 9.97 9.97 44.83 3.16
6290 8804 6.069615 AGGAACAACTAAGGCATGGTATAAGT 60.070 38.462 0.00 0.00 0.00 2.24
6291 8805 6.260936 CAGGAACAACTAAGGCATGGTATAAG 59.739 42.308 0.00 0.00 0.00 1.73
6297 8817 2.094675 CCAGGAACAACTAAGGCATGG 58.905 52.381 0.00 0.00 0.00 3.66
6306 8826 0.916086 TCACCACACCAGGAACAACT 59.084 50.000 0.00 0.00 0.00 3.16
6311 8831 0.182537 CCAAGTCACCACACCAGGAA 59.817 55.000 0.00 0.00 0.00 3.36
6326 8846 0.540365 TTGAAGCTGGGCCTTCCAAG 60.540 55.000 4.53 0.00 46.51 3.61
6327 8847 0.114954 ATTGAAGCTGGGCCTTCCAA 59.885 50.000 4.53 2.54 46.51 3.53
6328 8848 0.114954 AATTGAAGCTGGGCCTTCCA 59.885 50.000 4.53 0.00 44.79 3.53
6329 8849 1.269958 AAATTGAAGCTGGGCCTTCC 58.730 50.000 4.53 0.00 40.34 3.46
6330 8850 4.081476 ACAATAAATTGAAGCTGGGCCTTC 60.081 41.667 4.53 0.31 40.14 3.46
6331 8851 3.840078 ACAATAAATTGAAGCTGGGCCTT 59.160 39.130 4.53 0.00 40.14 4.35
6332 8852 3.444029 ACAATAAATTGAAGCTGGGCCT 58.556 40.909 4.53 0.00 40.14 5.19
6333 8853 3.893326 ACAATAAATTGAAGCTGGGCC 57.107 42.857 9.60 0.00 40.14 5.80
6334 8854 4.819769 TCAACAATAAATTGAAGCTGGGC 58.180 39.130 9.60 0.00 40.14 5.36
6335 8855 6.271488 TCTCAACAATAAATTGAAGCTGGG 57.729 37.500 9.60 2.19 40.14 4.45
6336 8856 7.769220 AGATCTCAACAATAAATTGAAGCTGG 58.231 34.615 9.60 0.00 40.14 4.85
6337 8857 9.073368 CAAGATCTCAACAATAAATTGAAGCTG 57.927 33.333 9.60 2.27 40.14 4.24
6338 8858 9.017509 TCAAGATCTCAACAATAAATTGAAGCT 57.982 29.630 9.60 0.00 40.14 3.74
6378 8899 8.920174 TCACTTATTTGAGACGGAAGGAATATA 58.080 33.333 0.00 0.00 0.00 0.86
6383 8904 4.817517 GTCACTTATTTGAGACGGAAGGA 58.182 43.478 0.00 0.00 0.00 3.36
6390 8911 8.709646 ACTAAATCAACGTCACTTATTTGAGAC 58.290 33.333 0.00 0.00 31.72 3.36
6391 8912 8.827177 ACTAAATCAACGTCACTTATTTGAGA 57.173 30.769 0.00 0.00 31.72 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.