Multiple sequence alignment - TraesCS7D01G401000
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS7D01G401000
chr7D
100.000
3408
0
0
1
3408
518092224
518088817
0.000000e+00
6294.0
1
TraesCS7D01G401000
chr7D
93.240
1642
90
14
1000
2636
518573603
518575228
0.000000e+00
2398.0
2
TraesCS7D01G401000
chr7D
94.640
597
29
2
2040
2636
518602073
518602666
0.000000e+00
922.0
3
TraesCS7D01G401000
chr7D
94.683
583
28
1
2006
2588
518558394
518558973
0.000000e+00
902.0
4
TraesCS7D01G401000
chr7D
90.625
512
26
10
2879
3370
518092240
518092749
0.000000e+00
660.0
5
TraesCS7D01G401000
chr7D
100.000
209
0
0
3774
3982
518088451
518088243
1.740000e-103
387.0
6
TraesCS7D01G401000
chr7D
86.875
160
19
2
3781
3940
518093059
518093216
1.140000e-40
178.0
7
TraesCS7D01G401000
chr7D
97.561
41
1
0
3937
3977
518093243
518093283
1.990000e-08
71.3
8
TraesCS7D01G401000
chr7B
92.066
2483
130
35
171
2636
551538122
551540554
0.000000e+00
3432.0
9
TraesCS7D01G401000
chr7B
94.180
1615
76
14
1000
2604
551897191
551898797
0.000000e+00
2446.0
10
TraesCS7D01G401000
chr7B
93.939
495
25
4
2880
3370
551505357
551504864
0.000000e+00
743.0
11
TraesCS7D01G401000
chr7B
88.750
160
15
2
3781
3940
551504529
551504373
4.060000e-45
193.0
12
TraesCS7D01G401000
chr7B
84.146
82
9
3
2679
2759
551540737
551540815
4.270000e-10
76.8
13
TraesCS7D01G401000
chr7A
93.802
2146
96
22
638
2763
593016516
593014388
0.000000e+00
3192.0
14
TraesCS7D01G401000
chr7A
91.518
2299
122
36
549
2813
593375790
593378049
0.000000e+00
3097.0
15
TraesCS7D01G401000
chr7A
91.734
496
27
8
2879
3370
593373533
593373048
0.000000e+00
676.0
16
TraesCS7D01G401000
chr7A
83.146
267
23
9
132
380
593373605
593373867
1.440000e-54
224.0
17
TraesCS7D01G401000
chr7A
79.518
166
10
12
372
536
593375143
593375285
3.280000e-16
97.1
18
TraesCS7D01G401000
chr1D
80.688
901
160
10
1676
2569
10935927
10935034
0.000000e+00
688.0
19
TraesCS7D01G401000
chr3B
83.489
642
97
6
1935
2571
712559071
712559708
1.230000e-164
590.0
20
TraesCS7D01G401000
chr3A
79.724
434
73
10
1136
1559
673435182
673435610
2.330000e-77
300.0
21
TraesCS7D01G401000
chr4B
74.862
362
87
4
1166
1525
605398595
605398236
1.150000e-35
161.0
22
TraesCS7D01G401000
chr2D
84.746
118
17
1
1
117
475505505
475505622
2.510000e-22
117.0
23
TraesCS7D01G401000
chr2A
83.051
118
19
1
1
117
723831733
723831850
5.440000e-19
106.0
24
TraesCS7D01G401000
chr2A
100.000
30
0
0
3947
3976
692731112
692731083
5.560000e-04
56.5
25
TraesCS7D01G401000
chr4A
90.196
51
3
2
1341
1390
572506701
572506652
9.240000e-07
65.8
26
TraesCS7D01G401000
chr5D
100.000
33
0
0
3944
3976
118567238
118567206
1.190000e-05
62.1
27
TraesCS7D01G401000
chr4D
88.235
51
4
2
1341
1390
30518608
30518657
4.300000e-05
60.2
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS7D01G401000
chr7D
518088243
518092224
3981
True
3340.500000
6294
100.000000
1
3982
2
chr7D.!!$R1
3981
1
TraesCS7D01G401000
chr7D
518573603
518575228
1625
False
2398.000000
2398
93.240000
1000
2636
1
chr7D.!!$F2
1636
2
TraesCS7D01G401000
chr7D
518602073
518602666
593
False
922.000000
922
94.640000
2040
2636
1
chr7D.!!$F3
596
3
TraesCS7D01G401000
chr7D
518558394
518558973
579
False
902.000000
902
94.683000
2006
2588
1
chr7D.!!$F1
582
4
TraesCS7D01G401000
chr7D
518092240
518093283
1043
False
303.100000
660
91.687000
2879
3977
3
chr7D.!!$F4
1098
5
TraesCS7D01G401000
chr7B
551897191
551898797
1606
False
2446.000000
2446
94.180000
1000
2604
1
chr7B.!!$F1
1604
6
TraesCS7D01G401000
chr7B
551538122
551540815
2693
False
1754.400000
3432
88.106000
171
2759
2
chr7B.!!$F2
2588
7
TraesCS7D01G401000
chr7B
551504373
551505357
984
True
468.000000
743
91.344500
2880
3940
2
chr7B.!!$R1
1060
8
TraesCS7D01G401000
chr7A
593014388
593016516
2128
True
3192.000000
3192
93.802000
638
2763
1
chr7A.!!$R1
2125
9
TraesCS7D01G401000
chr7A
593373605
593378049
4444
False
1139.366667
3097
84.727333
132
2813
3
chr7A.!!$F1
2681
10
TraesCS7D01G401000
chr1D
10935034
10935927
893
True
688.000000
688
80.688000
1676
2569
1
chr1D.!!$R1
893
11
TraesCS7D01G401000
chr3B
712559071
712559708
637
False
590.000000
590
83.489000
1935
2571
1
chr3B.!!$F1
636
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
87
88
0.033504
TTCTCCGCTCCGCATATTCC
59.966
55.0
0.00
0.00
0.00
3.01
F
437
1741
0.035317
TCATATGTCCCCTCATGCGC
59.965
55.0
0.00
0.00
0.00
6.09
F
1623
3476
0.318784
GTGTCCCTGTCACGTGAGAC
60.319
60.0
20.73
21.62
38.99
3.36
F
2782
4799
1.071314
TCCTTCTGGCAAAAGGGGGA
61.071
55.0
19.18
0.00
42.99
4.81
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1656
3509
1.595328
CACGACGTCCAAACAACATCA
59.405
47.619
10.58
0.00
0.00
3.07
R
2328
4196
1.507630
CGATGTACGTCCGGGACAA
59.492
57.895
25.80
11.24
37.22
3.18
R
2824
4841
0.178876
TGTTGATCCACTCCCCCTCA
60.179
55.000
0.00
0.00
0.00
3.86
R
3847
5930
2.126071
TGCGCTTCTGACTACCGC
60.126
61.111
9.73
0.00
44.39
5.68
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
18
19
2.930935
ACCACTCCACTCCACAACT
58.069
52.632
0.00
0.00
0.00
3.16
19
20
0.759346
ACCACTCCACTCCACAACTC
59.241
55.000
0.00
0.00
0.00
3.01
20
21
1.051812
CCACTCCACTCCACAACTCT
58.948
55.000
0.00
0.00
0.00
3.24
21
22
1.270518
CCACTCCACTCCACAACTCTG
60.271
57.143
0.00
0.00
0.00
3.35
22
23
1.051812
ACTCCACTCCACAACTCTGG
58.948
55.000
0.00
0.00
0.00
3.86
23
24
0.322975
CTCCACTCCACAACTCTGGG
59.677
60.000
0.00
0.00
31.41
4.45
24
25
0.105194
TCCACTCCACAACTCTGGGA
60.105
55.000
0.00
0.00
31.41
4.37
27
28
1.079543
CTCCACAACTCTGGGAGCG
60.080
63.158
0.00
0.00
41.53
5.03
28
29
2.046892
CCACAACTCTGGGAGCGG
60.047
66.667
0.00
0.00
32.04
5.52
29
30
2.583441
CCACAACTCTGGGAGCGGA
61.583
63.158
0.00
0.00
32.04
5.54
30
31
1.079543
CACAACTCTGGGAGCGGAG
60.080
63.158
0.00
0.00
32.04
4.63
31
32
1.534235
ACAACTCTGGGAGCGGAGT
60.534
57.895
0.00
0.00
43.60
3.85
32
33
4.217112
AACTCTGGGAGCGGAGTT
57.783
55.556
0.00
0.00
44.72
3.01
33
34
1.674057
AACTCTGGGAGCGGAGTTG
59.326
57.895
0.00
0.00
46.76
3.16
34
35
1.831652
AACTCTGGGAGCGGAGTTGG
61.832
60.000
0.00
0.00
46.76
3.77
35
36
3.672295
CTCTGGGAGCGGAGTTGGC
62.672
68.421
0.00
0.00
0.00
4.52
36
37
4.020617
CTGGGAGCGGAGTTGGCA
62.021
66.667
0.00
0.00
0.00
4.92
37
38
3.965539
CTGGGAGCGGAGTTGGCAG
62.966
68.421
0.00
0.00
0.00
4.85
38
39
3.706373
GGGAGCGGAGTTGGCAGA
61.706
66.667
0.00
0.00
0.00
4.26
39
40
2.125350
GGAGCGGAGTTGGCAGAG
60.125
66.667
0.00
0.00
0.00
3.35
40
41
2.817396
GAGCGGAGTTGGCAGAGC
60.817
66.667
0.00
0.00
0.00
4.09
41
42
3.308014
GAGCGGAGTTGGCAGAGCT
62.308
63.158
0.00
0.00
37.69
4.09
42
43
3.123620
GCGGAGTTGGCAGAGCTG
61.124
66.667
0.00
0.00
0.00
4.24
55
56
3.549299
CAGAGCTGCAGTGTAAAAAGG
57.451
47.619
16.64
0.00
0.00
3.11
56
57
3.141398
CAGAGCTGCAGTGTAAAAAGGA
58.859
45.455
16.64
0.00
0.00
3.36
57
58
3.188048
CAGAGCTGCAGTGTAAAAAGGAG
59.812
47.826
16.64
0.00
0.00
3.69
58
59
2.485814
GAGCTGCAGTGTAAAAAGGAGG
59.514
50.000
16.64
0.00
0.00
4.30
59
60
2.106511
AGCTGCAGTGTAAAAAGGAGGA
59.893
45.455
16.64
0.00
0.00
3.71
60
61
2.485814
GCTGCAGTGTAAAAAGGAGGAG
59.514
50.000
16.64
0.00
0.00
3.69
61
62
3.744660
CTGCAGTGTAAAAAGGAGGAGT
58.255
45.455
5.25
0.00
0.00
3.85
62
63
4.137543
CTGCAGTGTAAAAAGGAGGAGTT
58.862
43.478
5.25
0.00
0.00
3.01
63
64
3.882888
TGCAGTGTAAAAAGGAGGAGTTG
59.117
43.478
0.00
0.00
0.00
3.16
64
65
3.304726
GCAGTGTAAAAAGGAGGAGTTGC
60.305
47.826
0.00
0.00
0.00
4.17
65
66
3.882888
CAGTGTAAAAAGGAGGAGTTGCA
59.117
43.478
0.00
0.00
0.00
4.08
66
67
4.023707
CAGTGTAAAAAGGAGGAGTTGCAG
60.024
45.833
0.00
0.00
0.00
4.41
67
68
3.883489
GTGTAAAAAGGAGGAGTTGCAGT
59.117
43.478
0.00
0.00
0.00
4.40
68
69
4.338400
GTGTAAAAAGGAGGAGTTGCAGTT
59.662
41.667
0.00
0.00
0.00
3.16
69
70
4.953579
TGTAAAAAGGAGGAGTTGCAGTTT
59.046
37.500
0.00
0.00
0.00
2.66
70
71
4.655762
AAAAAGGAGGAGTTGCAGTTTC
57.344
40.909
0.00
0.00
0.00
2.78
71
72
3.584733
AAAGGAGGAGTTGCAGTTTCT
57.415
42.857
0.00
0.00
0.00
2.52
72
73
2.849294
AGGAGGAGTTGCAGTTTCTC
57.151
50.000
0.32
0.32
0.00
2.87
73
74
1.349357
AGGAGGAGTTGCAGTTTCTCC
59.651
52.381
15.73
15.73
45.56
3.71
75
76
1.869690
GGAGTTGCAGTTTCTCCGC
59.130
57.895
11.49
0.00
38.37
5.54
76
77
0.603975
GGAGTTGCAGTTTCTCCGCT
60.604
55.000
11.49
0.00
38.37
5.52
77
78
0.793250
GAGTTGCAGTTTCTCCGCTC
59.207
55.000
0.00
0.00
0.00
5.03
78
79
0.603975
AGTTGCAGTTTCTCCGCTCC
60.604
55.000
0.00
0.00
0.00
4.70
79
80
1.667830
TTGCAGTTTCTCCGCTCCG
60.668
57.895
0.00
0.00
0.00
4.63
80
81
3.491652
GCAGTTTCTCCGCTCCGC
61.492
66.667
0.00
0.00
0.00
5.54
81
82
2.048222
CAGTTTCTCCGCTCCGCA
60.048
61.111
0.00
0.00
0.00
5.69
82
83
1.448540
CAGTTTCTCCGCTCCGCAT
60.449
57.895
0.00
0.00
0.00
4.73
83
84
0.179111
CAGTTTCTCCGCTCCGCATA
60.179
55.000
0.00
0.00
0.00
3.14
84
85
0.753262
AGTTTCTCCGCTCCGCATAT
59.247
50.000
0.00
0.00
0.00
1.78
85
86
1.139058
AGTTTCTCCGCTCCGCATATT
59.861
47.619
0.00
0.00
0.00
1.28
86
87
1.527311
GTTTCTCCGCTCCGCATATTC
59.473
52.381
0.00
0.00
0.00
1.75
87
88
0.033504
TTCTCCGCTCCGCATATTCC
59.966
55.000
0.00
0.00
0.00
3.01
88
89
1.734477
CTCCGCTCCGCATATTCCG
60.734
63.158
0.00
0.00
0.00
4.30
89
90
2.142357
CTCCGCTCCGCATATTCCGA
62.142
60.000
0.00
0.00
0.00
4.55
90
91
1.734477
CCGCTCCGCATATTCCGAG
60.734
63.158
0.00
0.00
0.00
4.63
91
92
1.285950
CGCTCCGCATATTCCGAGA
59.714
57.895
0.00
0.00
0.00
4.04
92
93
0.730834
CGCTCCGCATATTCCGAGAG
60.731
60.000
0.00
2.33
0.00
3.20
93
94
1.011451
GCTCCGCATATTCCGAGAGC
61.011
60.000
14.37
14.37
39.69
4.09
112
113
2.776659
GGTGATTACCGAACAGGGC
58.223
57.895
0.00
0.00
46.96
5.19
113
114
0.746923
GGTGATTACCGAACAGGGCC
60.747
60.000
0.00
0.00
46.96
5.80
114
115
0.252197
GTGATTACCGAACAGGGCCT
59.748
55.000
0.00
0.00
46.96
5.19
115
116
1.483415
GTGATTACCGAACAGGGCCTA
59.517
52.381
5.28
0.00
46.96
3.93
116
117
2.093341
GTGATTACCGAACAGGGCCTAA
60.093
50.000
5.28
0.00
46.96
2.69
117
118
2.093341
TGATTACCGAACAGGGCCTAAC
60.093
50.000
5.28
0.00
46.96
2.34
118
119
1.648116
TTACCGAACAGGGCCTAACT
58.352
50.000
5.28
0.00
46.96
2.24
119
120
2.530460
TACCGAACAGGGCCTAACTA
57.470
50.000
5.28
0.00
46.96
2.24
120
121
1.192428
ACCGAACAGGGCCTAACTAG
58.808
55.000
5.28
0.00
46.96
2.57
121
122
1.272872
ACCGAACAGGGCCTAACTAGA
60.273
52.381
5.28
0.00
46.96
2.43
122
123
1.409427
CCGAACAGGGCCTAACTAGAG
59.591
57.143
5.28
0.00
35.97
2.43
123
124
2.376109
CGAACAGGGCCTAACTAGAGA
58.624
52.381
5.28
0.00
0.00
3.10
124
125
2.758979
CGAACAGGGCCTAACTAGAGAA
59.241
50.000
5.28
0.00
0.00
2.87
125
126
3.385111
CGAACAGGGCCTAACTAGAGAAT
59.615
47.826
5.28
0.00
0.00
2.40
126
127
4.500035
CGAACAGGGCCTAACTAGAGAATC
60.500
50.000
5.28
0.00
0.00
2.52
127
128
3.310193
ACAGGGCCTAACTAGAGAATCC
58.690
50.000
5.28
0.00
33.66
3.01
128
129
3.309296
CAGGGCCTAACTAGAGAATCCA
58.691
50.000
5.28
0.00
33.66
3.41
129
130
3.323403
CAGGGCCTAACTAGAGAATCCAG
59.677
52.174
5.28
0.00
33.66
3.86
130
131
2.635427
GGGCCTAACTAGAGAATCCAGG
59.365
54.545
0.84
0.00
33.66
4.45
140
141
2.244510
AGAGAATCCAGGCTCTCTCTCA
59.755
50.000
12.95
0.00
44.04
3.27
144
145
4.288105
AGAATCCAGGCTCTCTCTCAAAAA
59.712
41.667
0.00
0.00
0.00
1.94
171
174
8.658840
AAAACTAGAGAGTCTAGGTGATCTTT
57.341
34.615
14.09
3.51
45.71
2.52
187
190
0.100325
CTTTCCGTGTGTTGCTGCAA
59.900
50.000
11.69
11.69
0.00
4.08
242
246
8.398491
TGTACGAAGAAATTACCTAAATCGAC
57.602
34.615
0.00
0.00
0.00
4.20
253
257
9.978044
AATTACCTAAATCGACTGAGTAATACC
57.022
33.333
9.00
0.00
30.83
2.73
271
275
3.366052
ACCAGTATTTCTCCCGCAAAT
57.634
42.857
0.00
0.00
0.00
2.32
272
276
3.697166
ACCAGTATTTCTCCCGCAAATT
58.303
40.909
0.00
0.00
0.00
1.82
273
277
4.086457
ACCAGTATTTCTCCCGCAAATTT
58.914
39.130
0.00
0.00
0.00
1.82
274
278
4.526650
ACCAGTATTTCTCCCGCAAATTTT
59.473
37.500
0.00
0.00
0.00
1.82
275
279
5.011635
ACCAGTATTTCTCCCGCAAATTTTT
59.988
36.000
0.00
0.00
0.00
1.94
341
360
7.892778
TTGTACAATTATCTAAACACGAGCA
57.107
32.000
3.59
0.00
0.00
4.26
344
363
6.648725
ACAATTATCTAAACACGAGCACTC
57.351
37.500
0.00
0.00
0.00
3.51
437
1741
0.035317
TCATATGTCCCCTCATGCGC
59.965
55.000
0.00
0.00
0.00
6.09
445
1749
2.610694
CCCTCATGCGCGCCATTAG
61.611
63.158
30.77
20.34
29.71
1.73
446
1750
1.889105
CCTCATGCGCGCCATTAGT
60.889
57.895
30.77
4.40
29.71
2.24
448
1752
2.150809
CTCATGCGCGCCATTAGTCG
62.151
60.000
30.77
9.65
29.71
4.18
449
1753
2.106131
ATGCGCGCCATTAGTCGA
59.894
55.556
30.77
6.52
0.00
4.20
450
1754
1.951130
ATGCGCGCCATTAGTCGAG
60.951
57.895
30.77
0.00
0.00
4.04
451
1755
3.989595
GCGCGCCATTAGTCGAGC
61.990
66.667
23.24
0.00
43.28
5.03
452
1756
3.330853
CGCGCCATTAGTCGAGCC
61.331
66.667
0.00
0.00
0.00
4.70
453
1757
3.330853
GCGCCATTAGTCGAGCCG
61.331
66.667
0.00
0.00
0.00
5.52
454
1758
2.658593
CGCCATTAGTCGAGCCGG
60.659
66.667
0.00
0.00
0.00
6.13
455
1759
2.967615
GCCATTAGTCGAGCCGGC
60.968
66.667
21.89
21.89
0.00
6.13
456
1760
2.499205
CCATTAGTCGAGCCGGCA
59.501
61.111
31.54
4.59
32.13
5.69
457
1761
1.069765
CCATTAGTCGAGCCGGCAT
59.930
57.895
31.54
14.28
32.13
4.40
458
1762
0.532862
CCATTAGTCGAGCCGGCATT
60.533
55.000
31.54
9.09
32.13
3.56
459
1763
1.299541
CATTAGTCGAGCCGGCATTT
58.700
50.000
31.54
8.11
32.13
2.32
460
1764
2.479837
CATTAGTCGAGCCGGCATTTA
58.520
47.619
31.54
10.57
32.13
1.40
461
1765
2.902705
TTAGTCGAGCCGGCATTTAT
57.097
45.000
31.54
14.04
32.13
1.40
462
1766
4.242475
CATTAGTCGAGCCGGCATTTATA
58.758
43.478
31.54
12.91
32.13
0.98
463
1767
2.150397
AGTCGAGCCGGCATTTATAC
57.850
50.000
31.54
16.83
32.13
1.47
464
1768
0.782384
GTCGAGCCGGCATTTATACG
59.218
55.000
31.54
20.03
0.00
3.06
465
1769
0.386476
TCGAGCCGGCATTTATACGT
59.614
50.000
31.54
3.33
0.00
3.57
466
1770
1.608109
TCGAGCCGGCATTTATACGTA
59.392
47.619
31.54
0.00
0.00
3.57
494
1798
5.587388
ATGATTTGATTTGATTGACGGCT
57.413
34.783
0.00
0.00
0.00
5.52
571
2367
0.875059
CGGTCAAAAAGGCTCTCACC
59.125
55.000
0.00
0.00
0.00
4.02
580
2376
1.484038
AGGCTCTCACCACTGATCTC
58.516
55.000
0.00
0.00
0.00
2.75
764
2568
1.333931
TGATCACGCACGAGATCTACC
59.666
52.381
24.02
6.13
40.94
3.18
772
2576
2.144730
CACGAGATCTACCGGAGTAGG
58.855
57.143
9.46
0.00
45.24
3.18
905
2719
2.030562
CCCACCACACGACCACTC
59.969
66.667
0.00
0.00
0.00
3.51
912
2726
1.205655
CCACACGACCACTCATCTCAT
59.794
52.381
0.00
0.00
0.00
2.90
913
2727
2.265683
CACACGACCACTCATCTCATG
58.734
52.381
0.00
0.00
0.00
3.07
914
2728
1.284657
CACGACCACTCATCTCATGC
58.715
55.000
0.00
0.00
0.00
4.06
915
2729
0.897621
ACGACCACTCATCTCATGCA
59.102
50.000
0.00
0.00
0.00
3.96
937
2751
4.143333
CCGTCCACCTACTGGCCG
62.143
72.222
0.00
0.00
41.32
6.13
996
2810
1.250840
GGCACCAACCCCAACATCTC
61.251
60.000
0.00
0.00
0.00
2.75
1127
2962
1.169661
TCTAGCTAGCTGCCTCGCTC
61.170
60.000
27.68
0.00
39.15
5.03
1598
3448
4.735873
GCTCTACATCCAGGTACGTAAACC
60.736
50.000
0.00
0.00
40.06
3.27
1623
3476
0.318784
GTGTCCCTGTCACGTGAGAC
60.319
60.000
20.73
21.62
38.99
3.36
1643
3496
3.463944
ACCGATTCACGAGTTGTTTCTT
58.536
40.909
0.00
0.00
45.77
2.52
1647
3500
4.898488
CGATTCACGAGTTGTTTCTTTGTC
59.102
41.667
0.00
0.00
45.77
3.18
1656
3509
7.751793
ACGAGTTGTTTCTTTGTCGTTTTTAAT
59.248
29.630
0.00
0.00
37.36
1.40
1667
3520
9.407514
CTTTGTCGTTTTTAATGATGTTGTTTG
57.592
29.630
0.00
0.00
0.00
2.93
1967
3832
3.404773
CCCTTCTTCTTCGGGCCT
58.595
61.111
0.84
0.00
0.00
5.19
1970
3835
1.592223
CTTCTTCTTCGGGCCTCGT
59.408
57.895
0.84
0.00
40.32
4.18
2573
4441
4.899239
GGCCTCACCGCCGAGATG
62.899
72.222
0.00
0.00
39.64
2.90
2575
4443
2.782222
GCCTCACCGCCGAGATGTA
61.782
63.158
1.19
0.00
34.79
2.29
2646
4526
3.125316
GCCGCATATACAAAACGTCCTA
58.875
45.455
0.00
0.00
0.00
2.94
2760
4777
9.137459
CTGGATCTACTAGTAAGGAATGAAAGA
57.863
37.037
3.76
0.00
0.00
2.52
2771
4788
4.853007
AGGAATGAAAGATGTCCTTCTGG
58.147
43.478
0.00
0.00
37.17
3.86
2782
4799
1.071314
TCCTTCTGGCAAAAGGGGGA
61.071
55.000
19.18
0.00
42.99
4.81
2786
4803
1.715785
TCTGGCAAAAGGGGGAAAAG
58.284
50.000
0.00
0.00
0.00
2.27
2790
4807
1.347707
GGCAAAAGGGGGAAAAGGAAG
59.652
52.381
0.00
0.00
0.00
3.46
2805
4822
3.146104
AGGAAGGATGAAAGGTGTGTG
57.854
47.619
0.00
0.00
0.00
3.82
2806
4823
1.541588
GGAAGGATGAAAGGTGTGTGC
59.458
52.381
0.00
0.00
0.00
4.57
2807
4824
2.508526
GAAGGATGAAAGGTGTGTGCT
58.491
47.619
0.00
0.00
0.00
4.40
2808
4825
3.559171
GGAAGGATGAAAGGTGTGTGCTA
60.559
47.826
0.00
0.00
0.00
3.49
2809
4826
3.059352
AGGATGAAAGGTGTGTGCTAC
57.941
47.619
0.00
0.00
0.00
3.58
2810
4827
2.639839
AGGATGAAAGGTGTGTGCTACT
59.360
45.455
0.00
0.00
0.00
2.57
2811
4828
3.838317
AGGATGAAAGGTGTGTGCTACTA
59.162
43.478
0.00
0.00
0.00
1.82
2812
4829
3.933332
GGATGAAAGGTGTGTGCTACTAC
59.067
47.826
0.00
0.00
0.00
2.73
2813
4830
4.562757
GGATGAAAGGTGTGTGCTACTACA
60.563
45.833
0.00
0.00
0.00
2.74
2814
4831
4.409718
TGAAAGGTGTGTGCTACTACAA
57.590
40.909
0.00
0.00
31.36
2.41
2815
4832
4.968259
TGAAAGGTGTGTGCTACTACAAT
58.032
39.130
0.00
0.00
31.36
2.71
2816
4833
6.104146
TGAAAGGTGTGTGCTACTACAATA
57.896
37.500
0.00
0.00
31.36
1.90
2817
4834
6.707290
TGAAAGGTGTGTGCTACTACAATAT
58.293
36.000
0.00
0.00
31.36
1.28
2818
4835
6.816640
TGAAAGGTGTGTGCTACTACAATATC
59.183
38.462
0.00
0.00
31.36
1.63
2819
4836
6.546428
AAGGTGTGTGCTACTACAATATCT
57.454
37.500
0.00
0.00
31.36
1.98
2820
4837
7.655521
AAGGTGTGTGCTACTACAATATCTA
57.344
36.000
0.00
0.00
31.36
1.98
2821
4838
7.040473
AGGTGTGTGCTACTACAATATCTAC
57.960
40.000
0.00
0.00
31.36
2.59
2822
4839
6.834451
AGGTGTGTGCTACTACAATATCTACT
59.166
38.462
0.00
0.00
31.36
2.57
2823
4840
7.342284
AGGTGTGTGCTACTACAATATCTACTT
59.658
37.037
0.00
0.00
31.36
2.24
2824
4841
7.980099
GGTGTGTGCTACTACAATATCTACTTT
59.020
37.037
0.00
0.00
31.36
2.66
2825
4842
8.808529
GTGTGTGCTACTACAATATCTACTTTG
58.191
37.037
0.00
0.00
31.36
2.77
2826
4843
8.745590
TGTGTGCTACTACAATATCTACTTTGA
58.254
33.333
0.00
0.00
31.36
2.69
2827
4844
9.239002
GTGTGCTACTACAATATCTACTTTGAG
57.761
37.037
0.00
0.00
31.36
3.02
2828
4845
8.414003
TGTGCTACTACAATATCTACTTTGAGG
58.586
37.037
0.00
0.00
0.00
3.86
2829
4846
7.868415
GTGCTACTACAATATCTACTTTGAGGG
59.132
40.741
0.00
0.00
0.00
4.30
2830
4847
7.015292
TGCTACTACAATATCTACTTTGAGGGG
59.985
40.741
0.00
0.00
0.00
4.79
2831
4848
6.749036
ACTACAATATCTACTTTGAGGGGG
57.251
41.667
0.00
0.00
0.00
5.40
2832
4849
6.449956
ACTACAATATCTACTTTGAGGGGGA
58.550
40.000
0.00
0.00
0.00
4.81
2833
4850
5.896073
ACAATATCTACTTTGAGGGGGAG
57.104
43.478
0.00
0.00
0.00
4.30
2834
4851
5.289510
ACAATATCTACTTTGAGGGGGAGT
58.710
41.667
0.00
0.00
0.00
3.85
2835
4852
5.131142
ACAATATCTACTTTGAGGGGGAGTG
59.869
44.000
0.00
0.00
0.00
3.51
2836
4853
1.952621
TCTACTTTGAGGGGGAGTGG
58.047
55.000
0.00
0.00
0.00
4.00
2837
4854
1.435563
TCTACTTTGAGGGGGAGTGGA
59.564
52.381
0.00
0.00
0.00
4.02
2838
4855
2.045885
TCTACTTTGAGGGGGAGTGGAT
59.954
50.000
0.00
0.00
0.00
3.41
2839
4856
1.290134
ACTTTGAGGGGGAGTGGATC
58.710
55.000
0.00
0.00
0.00
3.36
2840
4857
1.289160
CTTTGAGGGGGAGTGGATCA
58.711
55.000
0.00
0.00
0.00
2.92
2841
4858
1.635487
CTTTGAGGGGGAGTGGATCAA
59.365
52.381
0.00
0.00
0.00
2.57
2842
4859
0.991920
TTGAGGGGGAGTGGATCAAC
59.008
55.000
0.00
0.00
0.00
3.18
2843
4860
0.178876
TGAGGGGGAGTGGATCAACA
60.179
55.000
2.34
0.00
0.00
3.33
2844
4861
0.543749
GAGGGGGAGTGGATCAACAG
59.456
60.000
2.34
0.00
0.00
3.16
2845
4862
1.077429
GGGGGAGTGGATCAACAGC
60.077
63.158
2.34
0.00
0.00
4.40
2846
4863
1.566298
GGGGGAGTGGATCAACAGCT
61.566
60.000
2.34
0.00
0.00
4.24
2847
4864
1.204146
GGGGAGTGGATCAACAGCTA
58.796
55.000
2.34
0.00
0.00
3.32
2848
4865
1.134371
GGGGAGTGGATCAACAGCTAC
60.134
57.143
2.34
0.00
0.00
3.58
2849
4866
1.555075
GGGAGTGGATCAACAGCTACA
59.445
52.381
2.34
0.00
0.00
2.74
2850
4867
2.419297
GGGAGTGGATCAACAGCTACAG
60.419
54.545
2.34
0.00
0.00
2.74
2851
4868
2.234908
GGAGTGGATCAACAGCTACAGT
59.765
50.000
2.34
0.00
0.00
3.55
2852
4869
3.307059
GGAGTGGATCAACAGCTACAGTT
60.307
47.826
2.34
0.00
0.00
3.16
2853
4870
3.929610
GAGTGGATCAACAGCTACAGTTC
59.070
47.826
2.34
0.00
0.00
3.01
2854
4871
3.324846
AGTGGATCAACAGCTACAGTTCA
59.675
43.478
2.34
0.00
0.00
3.18
2855
4872
3.433615
GTGGATCAACAGCTACAGTTCAC
59.566
47.826
0.00
0.00
0.00
3.18
2856
4873
3.070878
TGGATCAACAGCTACAGTTCACA
59.929
43.478
0.00
0.00
0.00
3.58
2857
4874
4.065088
GGATCAACAGCTACAGTTCACAA
58.935
43.478
0.00
0.00
0.00
3.33
2858
4875
4.515191
GGATCAACAGCTACAGTTCACAAA
59.485
41.667
0.00
0.00
0.00
2.83
2859
4876
5.008613
GGATCAACAGCTACAGTTCACAAAA
59.991
40.000
0.00
0.00
0.00
2.44
2860
4877
5.888691
TCAACAGCTACAGTTCACAAAAA
57.111
34.783
0.00
0.00
0.00
1.94
2905
4922
2.023673
CACTCCAACTTCTTGCCACAA
58.976
47.619
0.00
0.00
0.00
3.33
2910
4927
2.689983
CCAACTTCTTGCCACAAACTCT
59.310
45.455
0.00
0.00
0.00
3.24
2920
4937
2.551071
GCCACAAACTCTACTGGCTTCT
60.551
50.000
0.12
0.00
44.99
2.85
3050
5068
9.167311
ACTCAAGAAATAAGTGATGAATGTACC
57.833
33.333
0.00
0.00
0.00
3.34
3052
5070
9.739276
TCAAGAAATAAGTGATGAATGTACCTT
57.261
29.630
0.00
0.00
0.00
3.50
3159
5178
8.665685
ACGGTGACATAAATATCAAAGAAGAAC
58.334
33.333
0.00
0.00
0.00
3.01
3193
5212
1.009829
GATAACTTGAGCCGCCACTG
58.990
55.000
0.00
0.00
0.00
3.66
3271
5291
1.922447
AGAACAGGCCCCAATGTATGA
59.078
47.619
0.00
0.00
0.00
2.15
3321
5357
1.404477
CTTGCGCACCTTAAAAACCG
58.596
50.000
11.12
0.00
0.00
4.44
3360
5398
4.655963
AGTGTTAATCAGTGGAAGCACAT
58.344
39.130
8.91
0.00
0.00
3.21
3394
5476
1.972872
ATTCCATGCGAGGATTCCAC
58.027
50.000
5.29
0.00
37.56
4.02
3400
5482
2.859165
TGCGAGGATTCCACTTCTTT
57.141
45.000
5.29
0.00
0.00
2.52
3402
5484
3.486383
TGCGAGGATTCCACTTCTTTTT
58.514
40.909
5.29
0.00
0.00
1.94
3403
5485
3.502211
TGCGAGGATTCCACTTCTTTTTC
59.498
43.478
5.29
0.00
0.00
2.29
3407
5489
6.072673
GCGAGGATTCCACTTCTTTTTCTTTA
60.073
38.462
5.29
0.00
0.00
1.85
3820
5903
2.742372
GAGCGGCGACCAACATGT
60.742
61.111
12.98
0.00
0.00
3.21
3840
5923
3.516300
TGTGGCCCTACGAAGAAGATAAA
59.484
43.478
0.00
0.00
0.00
1.40
3843
5926
3.121544
GCCCTACGAAGAAGATAAACGG
58.878
50.000
0.00
0.00
0.00
4.44
3847
5930
0.044161
CGAAGAAGATAAACGGCGCG
60.044
55.000
6.90
0.00
0.00
6.86
3854
5937
3.704908
ATAAACGGCGCGCGGTAGT
62.705
57.895
38.71
30.71
0.00
2.73
3942
6054
2.100749
CTGCGGAAAAACAAGGAAAGGT
59.899
45.455
0.00
0.00
0.00
3.50
3977
6089
5.064198
ACCATTTTATTACATGTCGTCCACG
59.936
40.000
0.00
0.00
41.45
4.94
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
0
1
0.759346
GAGTTGTGGAGTGGAGTGGT
59.241
55.000
0.00
0.00
0.00
4.16
2
3
1.270518
CCAGAGTTGTGGAGTGGAGTG
60.271
57.143
0.00
0.00
40.44
3.51
4
5
0.322975
CCCAGAGTTGTGGAGTGGAG
59.677
60.000
0.00
0.00
40.44
3.86
5
6
0.105194
TCCCAGAGTTGTGGAGTGGA
60.105
55.000
0.00
0.00
40.44
4.02
6
7
0.322975
CTCCCAGAGTTGTGGAGTGG
59.677
60.000
0.00
0.00
40.44
4.00
7
8
0.321122
GCTCCCAGAGTTGTGGAGTG
60.321
60.000
6.64
0.00
40.78
3.51
8
9
1.821061
CGCTCCCAGAGTTGTGGAGT
61.821
60.000
6.64
0.00
40.78
3.85
9
10
1.079543
CGCTCCCAGAGTTGTGGAG
60.080
63.158
0.00
0.00
40.44
3.86
10
11
2.583441
CCGCTCCCAGAGTTGTGGA
61.583
63.158
0.00
0.00
40.44
4.02
11
12
2.046892
CCGCTCCCAGAGTTGTGG
60.047
66.667
0.00
0.00
37.34
4.17
12
13
1.079543
CTCCGCTCCCAGAGTTGTG
60.080
63.158
0.00
0.00
31.39
3.33
13
14
1.534235
ACTCCGCTCCCAGAGTTGT
60.534
57.895
0.00
0.00
40.43
3.32
14
15
3.382111
ACTCCGCTCCCAGAGTTG
58.618
61.111
0.00
0.00
40.43
3.16
15
16
4.217112
AACTCCGCTCCCAGAGTT
57.783
55.556
0.00
0.00
46.05
3.01
16
17
2.286523
CCAACTCCGCTCCCAGAGT
61.287
63.158
0.00
0.00
45.18
3.24
17
18
2.581354
CCAACTCCGCTCCCAGAG
59.419
66.667
0.00
0.00
36.16
3.35
18
19
3.706373
GCCAACTCCGCTCCCAGA
61.706
66.667
0.00
0.00
0.00
3.86
19
20
3.965539
CTGCCAACTCCGCTCCCAG
62.966
68.421
0.00
0.00
0.00
4.45
20
21
4.020617
CTGCCAACTCCGCTCCCA
62.021
66.667
0.00
0.00
0.00
4.37
21
22
3.672295
CTCTGCCAACTCCGCTCCC
62.672
68.421
0.00
0.00
0.00
4.30
22
23
2.125350
CTCTGCCAACTCCGCTCC
60.125
66.667
0.00
0.00
0.00
4.70
23
24
2.817396
GCTCTGCCAACTCCGCTC
60.817
66.667
0.00
0.00
0.00
5.03
24
25
3.317571
AGCTCTGCCAACTCCGCT
61.318
61.111
0.00
0.00
0.00
5.52
25
26
3.123620
CAGCTCTGCCAACTCCGC
61.124
66.667
0.00
0.00
0.00
5.54
35
36
3.141398
TCCTTTTTACACTGCAGCTCTG
58.859
45.455
15.27
7.51
0.00
3.35
36
37
3.406764
CTCCTTTTTACACTGCAGCTCT
58.593
45.455
15.27
0.00
0.00
4.09
37
38
2.485814
CCTCCTTTTTACACTGCAGCTC
59.514
50.000
15.27
0.00
0.00
4.09
38
39
2.106511
TCCTCCTTTTTACACTGCAGCT
59.893
45.455
15.27
0.98
0.00
4.24
39
40
2.485814
CTCCTCCTTTTTACACTGCAGC
59.514
50.000
15.27
0.00
0.00
5.25
40
41
3.744660
ACTCCTCCTTTTTACACTGCAG
58.255
45.455
13.48
13.48
0.00
4.41
41
42
3.857157
ACTCCTCCTTTTTACACTGCA
57.143
42.857
0.00
0.00
0.00
4.41
42
43
3.304726
GCAACTCCTCCTTTTTACACTGC
60.305
47.826
0.00
0.00
0.00
4.40
43
44
3.882888
TGCAACTCCTCCTTTTTACACTG
59.117
43.478
0.00
0.00
0.00
3.66
44
45
4.137543
CTGCAACTCCTCCTTTTTACACT
58.862
43.478
0.00
0.00
0.00
3.55
45
46
3.883489
ACTGCAACTCCTCCTTTTTACAC
59.117
43.478
0.00
0.00
0.00
2.90
46
47
4.164843
ACTGCAACTCCTCCTTTTTACA
57.835
40.909
0.00
0.00
0.00
2.41
47
48
5.299531
AGAAACTGCAACTCCTCCTTTTTAC
59.700
40.000
0.00
0.00
0.00
2.01
48
49
5.445964
AGAAACTGCAACTCCTCCTTTTTA
58.554
37.500
0.00
0.00
0.00
1.52
49
50
4.281657
AGAAACTGCAACTCCTCCTTTTT
58.718
39.130
0.00
0.00
0.00
1.94
50
51
3.885901
GAGAAACTGCAACTCCTCCTTTT
59.114
43.478
0.00
0.00
0.00
2.27
51
52
3.481453
GAGAAACTGCAACTCCTCCTTT
58.519
45.455
0.00
0.00
0.00
3.11
52
53
2.224646
GGAGAAACTGCAACTCCTCCTT
60.225
50.000
16.48
0.00
44.54
3.36
53
54
1.349357
GGAGAAACTGCAACTCCTCCT
59.651
52.381
16.48
0.00
44.54
3.69
54
55
1.814793
GGAGAAACTGCAACTCCTCC
58.185
55.000
16.48
12.78
44.54
4.30
55
56
1.433534
CGGAGAAACTGCAACTCCTC
58.566
55.000
19.37
10.59
45.40
3.71
56
57
3.614399
CGGAGAAACTGCAACTCCT
57.386
52.632
19.37
3.52
45.40
3.69
75
76
0.730834
CGCTCTCGGAATATGCGGAG
60.731
60.000
11.30
11.30
42.46
4.63
76
77
1.285950
CGCTCTCGGAATATGCGGA
59.714
57.895
0.00
0.00
42.46
5.54
77
78
3.848142
CGCTCTCGGAATATGCGG
58.152
61.111
0.00
0.00
42.46
5.69
94
95
0.746923
GGCCCTGTTCGGTAATCACC
60.747
60.000
0.00
0.00
41.93
4.02
95
96
0.252197
AGGCCCTGTTCGGTAATCAC
59.748
55.000
0.00
0.00
0.00
3.06
96
97
1.868713
TAGGCCCTGTTCGGTAATCA
58.131
50.000
0.00
0.00
0.00
2.57
97
98
2.169978
AGTTAGGCCCTGTTCGGTAATC
59.830
50.000
0.00
0.00
0.00
1.75
98
99
2.193993
AGTTAGGCCCTGTTCGGTAAT
58.806
47.619
0.00
0.00
0.00
1.89
99
100
1.648116
AGTTAGGCCCTGTTCGGTAA
58.352
50.000
0.00
0.00
0.00
2.85
100
101
2.025037
TCTAGTTAGGCCCTGTTCGGTA
60.025
50.000
0.00
0.00
0.00
4.02
101
102
1.192428
CTAGTTAGGCCCTGTTCGGT
58.808
55.000
0.00
0.00
0.00
4.69
102
103
1.409427
CTCTAGTTAGGCCCTGTTCGG
59.591
57.143
0.00
0.00
0.00
4.30
103
104
2.376109
TCTCTAGTTAGGCCCTGTTCG
58.624
52.381
0.00
0.00
0.00
3.95
104
105
4.202274
GGATTCTCTAGTTAGGCCCTGTTC
60.202
50.000
0.00
0.00
0.00
3.18
105
106
3.712218
GGATTCTCTAGTTAGGCCCTGTT
59.288
47.826
0.00
0.00
0.00
3.16
106
107
3.310193
GGATTCTCTAGTTAGGCCCTGT
58.690
50.000
0.00
0.00
0.00
4.00
107
108
3.309296
TGGATTCTCTAGTTAGGCCCTG
58.691
50.000
0.00
0.00
0.00
4.45
108
109
3.582164
CTGGATTCTCTAGTTAGGCCCT
58.418
50.000
0.00
0.00
0.00
5.19
109
110
2.635427
CCTGGATTCTCTAGTTAGGCCC
59.365
54.545
0.00
0.00
0.00
5.80
110
111
2.037902
GCCTGGATTCTCTAGTTAGGCC
59.962
54.545
0.00
0.00
42.49
5.19
111
112
3.394674
GCCTGGATTCTCTAGTTAGGC
57.605
52.381
0.00
0.00
41.92
3.93
112
113
4.479158
AGAGCCTGGATTCTCTAGTTAGG
58.521
47.826
0.00
0.00
37.86
2.69
113
114
5.385198
AGAGAGCCTGGATTCTCTAGTTAG
58.615
45.833
22.20
0.00
46.21
2.34
114
115
5.396057
AGAGAGCCTGGATTCTCTAGTTA
57.604
43.478
22.20
0.00
46.21
2.24
115
116
4.264373
AGAGAGCCTGGATTCTCTAGTT
57.736
45.455
22.20
6.06
46.21
2.24
116
117
3.971468
AGAGAGCCTGGATTCTCTAGT
57.029
47.619
22.20
6.33
46.21
2.57
120
121
2.665165
TGAGAGAGAGCCTGGATTCTC
58.335
52.381
16.47
16.47
40.07
2.87
121
122
2.844654
TGAGAGAGAGCCTGGATTCT
57.155
50.000
0.00
0.00
0.00
2.40
122
123
3.902881
TTTGAGAGAGAGCCTGGATTC
57.097
47.619
0.00
0.00
0.00
2.52
123
124
4.647564
TTTTTGAGAGAGAGCCTGGATT
57.352
40.909
0.00
0.00
0.00
3.01
158
161
3.162666
ACACACGGAAAGATCACCTAGA
58.837
45.455
0.00
0.00
0.00
2.43
171
174
0.100325
CTTTTGCAGCAACACACGGA
59.900
50.000
7.54
0.00
0.00
4.69
239
243
7.140048
GGAGAAATACTGGTATTACTCAGTCG
58.860
42.308
16.36
0.00
42.51
4.18
242
246
6.448006
CGGGAGAAATACTGGTATTACTCAG
58.552
44.000
6.44
9.45
34.90
3.35
418
1721
0.035317
GCGCATGAGGGGACATATGA
59.965
55.000
10.38
0.00
0.00
2.15
437
1741
2.658593
CCGGCTCGACTAATGGCG
60.659
66.667
10.09
10.09
46.76
5.69
445
1749
0.782384
CGTATAAATGCCGGCTCGAC
59.218
55.000
29.70
15.13
0.00
4.20
446
1750
0.386476
ACGTATAAATGCCGGCTCGA
59.614
50.000
29.70
7.94
0.00
4.04
448
1752
3.022607
ACTACGTATAAATGCCGGCTC
57.977
47.619
29.70
0.00
0.00
4.70
449
1753
3.571401
AGTACTACGTATAAATGCCGGCT
59.429
43.478
29.70
10.43
0.00
5.52
450
1754
3.905784
AGTACTACGTATAAATGCCGGC
58.094
45.455
22.73
22.73
0.00
6.13
451
1755
6.845302
TCATAGTACTACGTATAAATGCCGG
58.155
40.000
4.31
0.00
0.00
6.13
452
1756
8.906636
AATCATAGTACTACGTATAAATGCCG
57.093
34.615
4.31
0.00
0.00
5.69
466
1770
8.830580
CCGTCAATCAAATCAAATCATAGTACT
58.169
33.333
0.00
0.00
0.00
2.73
486
1790
4.947147
GTGCCACCCAGCCGTCAA
62.947
66.667
0.00
0.00
0.00
3.18
494
1798
1.563577
TTATTAGCCGGTGCCACCCA
61.564
55.000
8.62
0.00
38.69
4.51
571
2367
2.600731
GTTCAGACGTGGAGATCAGTG
58.399
52.381
0.00
0.00
0.00
3.66
764
2568
1.590238
CACGTACGTACTCCTACTCCG
59.410
57.143
22.34
9.24
0.00
4.63
772
2576
2.900122
TGGTAAGCACGTACGTACTC
57.100
50.000
22.34
12.99
0.00
2.59
832
2642
2.660552
AAAGACCCGACACGCACG
60.661
61.111
0.00
0.00
0.00
5.34
876
2686
0.255033
GTGGTGGGGGTTAGTGGATC
59.745
60.000
0.00
0.00
0.00
3.36
905
2719
2.141517
GGACGGAGAATGCATGAGATG
58.858
52.381
0.00
0.00
0.00
2.90
912
2726
0.535335
GTAGGTGGACGGAGAATGCA
59.465
55.000
0.00
0.00
0.00
3.96
913
2727
0.824759
AGTAGGTGGACGGAGAATGC
59.175
55.000
0.00
0.00
0.00
3.56
914
2728
2.586258
CAGTAGGTGGACGGAGAATG
57.414
55.000
0.00
0.00
0.00
2.67
947
2761
1.238625
GGCCATTTGGTCGTCGGAAA
61.239
55.000
0.00
0.00
37.57
3.13
996
2810
1.895231
GGCCGCGTTTTATAGGGGG
60.895
63.158
4.92
0.00
44.91
5.40
1127
2962
1.636340
GACAACGCCATCGATTCGG
59.364
57.895
17.68
9.14
39.41
4.30
1598
3448
1.956170
GTGACAGGGACACGTGCAG
60.956
63.158
17.22
3.57
35.97
4.41
1623
3476
4.211389
CAAAGAAACAACTCGTGAATCGG
58.789
43.478
0.00
0.00
40.32
4.18
1643
3496
7.759886
TCCAAACAACATCATTAAAAACGACAA
59.240
29.630
0.00
0.00
0.00
3.18
1647
3500
6.197468
ACGTCCAAACAACATCATTAAAAACG
59.803
34.615
0.00
0.00
0.00
3.60
1656
3509
1.595328
CACGACGTCCAAACAACATCA
59.405
47.619
10.58
0.00
0.00
3.07
1667
3520
2.733593
GTCACCTGCACGACGTCC
60.734
66.667
10.58
0.00
0.00
4.79
2328
4196
1.507630
CGATGTACGTCCGGGACAA
59.492
57.895
25.80
11.24
37.22
3.18
2606
4475
2.506438
GCACCAGGACGAGTACGC
60.506
66.667
0.00
0.00
43.96
4.42
2713
4730
8.542497
TCCAGTAAATCACATACAACAAGTAC
57.458
34.615
0.00
0.00
35.05
2.73
2717
4734
9.378551
GTAGATCCAGTAAATCACATACAACAA
57.621
33.333
0.00
0.00
0.00
2.83
2718
4735
8.758829
AGTAGATCCAGTAAATCACATACAACA
58.241
33.333
0.00
0.00
0.00
3.33
2760
4777
1.550869
CCCCTTTTGCCAGAAGGACAT
60.551
52.381
15.27
0.00
45.25
3.06
2767
4784
1.715785
CTTTTCCCCCTTTTGCCAGA
58.284
50.000
0.00
0.00
0.00
3.86
2771
4788
1.347707
CCTTCCTTTTCCCCCTTTTGC
59.652
52.381
0.00
0.00
0.00
3.68
2782
4799
4.342092
CACACACCTTTCATCCTTCCTTTT
59.658
41.667
0.00
0.00
0.00
2.27
2786
4803
1.541588
GCACACACCTTTCATCCTTCC
59.458
52.381
0.00
0.00
0.00
3.46
2790
4807
3.059352
AGTAGCACACACCTTTCATCC
57.941
47.619
0.00
0.00
0.00
3.51
2805
4822
7.379750
CCCCTCAAAGTAGATATTGTAGTAGC
58.620
42.308
0.00
0.00
0.00
3.58
2806
4823
7.728981
TCCCCCTCAAAGTAGATATTGTAGTAG
59.271
40.741
0.00
0.00
0.00
2.57
2807
4824
7.598248
TCCCCCTCAAAGTAGATATTGTAGTA
58.402
38.462
0.00
0.00
0.00
1.82
2808
4825
6.449956
TCCCCCTCAAAGTAGATATTGTAGT
58.550
40.000
0.00
0.00
0.00
2.73
2809
4826
6.555360
ACTCCCCCTCAAAGTAGATATTGTAG
59.445
42.308
0.00
0.00
0.00
2.74
2810
4827
6.326583
CACTCCCCCTCAAAGTAGATATTGTA
59.673
42.308
0.00
0.00
0.00
2.41
2811
4828
5.131142
CACTCCCCCTCAAAGTAGATATTGT
59.869
44.000
0.00
0.00
0.00
2.71
2812
4829
5.455326
CCACTCCCCCTCAAAGTAGATATTG
60.455
48.000
0.00
0.00
0.00
1.90
2813
4830
4.660771
CCACTCCCCCTCAAAGTAGATATT
59.339
45.833
0.00
0.00
0.00
1.28
2814
4831
4.077982
TCCACTCCCCCTCAAAGTAGATAT
60.078
45.833
0.00
0.00
0.00
1.63
2815
4832
3.273886
TCCACTCCCCCTCAAAGTAGATA
59.726
47.826
0.00
0.00
0.00
1.98
2816
4833
2.045885
TCCACTCCCCCTCAAAGTAGAT
59.954
50.000
0.00
0.00
0.00
1.98
2817
4834
1.435563
TCCACTCCCCCTCAAAGTAGA
59.564
52.381
0.00
0.00
0.00
2.59
2818
4835
1.952621
TCCACTCCCCCTCAAAGTAG
58.047
55.000
0.00
0.00
0.00
2.57
2819
4836
2.225779
TGATCCACTCCCCCTCAAAGTA
60.226
50.000
0.00
0.00
0.00
2.24
2820
4837
1.290134
GATCCACTCCCCCTCAAAGT
58.710
55.000
0.00
0.00
0.00
2.66
2821
4838
1.289160
TGATCCACTCCCCCTCAAAG
58.711
55.000
0.00
0.00
0.00
2.77
2822
4839
1.354368
GTTGATCCACTCCCCCTCAAA
59.646
52.381
0.00
0.00
0.00
2.69
2823
4840
0.991920
GTTGATCCACTCCCCCTCAA
59.008
55.000
0.00
0.00
0.00
3.02
2824
4841
0.178876
TGTTGATCCACTCCCCCTCA
60.179
55.000
0.00
0.00
0.00
3.86
2825
4842
0.543749
CTGTTGATCCACTCCCCCTC
59.456
60.000
0.00
0.00
0.00
4.30
2826
4843
1.566298
GCTGTTGATCCACTCCCCCT
61.566
60.000
0.00
0.00
0.00
4.79
2827
4844
1.077429
GCTGTTGATCCACTCCCCC
60.077
63.158
0.00
0.00
0.00
5.40
2828
4845
1.134371
GTAGCTGTTGATCCACTCCCC
60.134
57.143
0.00
0.00
0.00
4.81
2829
4846
1.555075
TGTAGCTGTTGATCCACTCCC
59.445
52.381
0.00
0.00
0.00
4.30
2830
4847
2.234908
ACTGTAGCTGTTGATCCACTCC
59.765
50.000
0.00
0.00
0.00
3.85
2831
4848
3.601443
ACTGTAGCTGTTGATCCACTC
57.399
47.619
0.00
0.00
0.00
3.51
2832
4849
3.324846
TGAACTGTAGCTGTTGATCCACT
59.675
43.478
0.00
0.00
0.00
4.00
2833
4850
3.433615
GTGAACTGTAGCTGTTGATCCAC
59.566
47.826
0.00
0.00
0.00
4.02
2834
4851
3.070878
TGTGAACTGTAGCTGTTGATCCA
59.929
43.478
0.00
0.00
0.00
3.41
2835
4852
3.664107
TGTGAACTGTAGCTGTTGATCC
58.336
45.455
0.00
0.00
0.00
3.36
2836
4853
5.673337
TTTGTGAACTGTAGCTGTTGATC
57.327
39.130
0.00
0.00
0.00
2.92
2837
4854
6.449635
TTTTTGTGAACTGTAGCTGTTGAT
57.550
33.333
0.00
0.00
0.00
2.57
2838
4855
5.888691
TTTTTGTGAACTGTAGCTGTTGA
57.111
34.783
0.00
0.00
0.00
3.18
2858
4875
9.447040
GCTTACTTTAGTCGTTCATTTTCTTTT
57.553
29.630
0.00
0.00
0.00
2.27
2859
4876
8.074370
GGCTTACTTTAGTCGTTCATTTTCTTT
58.926
33.333
0.00
0.00
0.00
2.52
2860
4877
7.227910
TGGCTTACTTTAGTCGTTCATTTTCTT
59.772
33.333
0.00
0.00
0.00
2.52
2861
4878
6.708949
TGGCTTACTTTAGTCGTTCATTTTCT
59.291
34.615
0.00
0.00
0.00
2.52
2862
4879
6.795593
GTGGCTTACTTTAGTCGTTCATTTTC
59.204
38.462
0.00
0.00
0.00
2.29
2863
4880
6.485648
AGTGGCTTACTTTAGTCGTTCATTTT
59.514
34.615
0.00
0.00
35.67
1.82
2864
4881
5.995897
AGTGGCTTACTTTAGTCGTTCATTT
59.004
36.000
0.00
0.00
35.67
2.32
2865
4882
5.548406
AGTGGCTTACTTTAGTCGTTCATT
58.452
37.500
0.00
0.00
35.67
2.57
2866
4883
5.148651
AGTGGCTTACTTTAGTCGTTCAT
57.851
39.130
0.00
0.00
35.67
2.57
2867
4884
4.553323
GAGTGGCTTACTTTAGTCGTTCA
58.447
43.478
0.00
0.00
40.53
3.18
2868
4885
3.925299
GGAGTGGCTTACTTTAGTCGTTC
59.075
47.826
0.00
0.00
40.53
3.95
2869
4886
3.322828
TGGAGTGGCTTACTTTAGTCGTT
59.677
43.478
0.00
0.00
40.53
3.85
2870
4887
2.895404
TGGAGTGGCTTACTTTAGTCGT
59.105
45.455
0.00
0.00
40.53
4.34
2871
4888
3.587797
TGGAGTGGCTTACTTTAGTCG
57.412
47.619
0.00
0.00
40.53
4.18
2872
4889
4.895961
AGTTGGAGTGGCTTACTTTAGTC
58.104
43.478
0.00
0.00
40.53
2.59
2873
4890
4.976540
AGTTGGAGTGGCTTACTTTAGT
57.023
40.909
0.00
0.00
40.53
2.24
2874
4891
5.552178
AGAAGTTGGAGTGGCTTACTTTAG
58.448
41.667
0.00
0.00
40.53
1.85
2875
4892
5.562298
AGAAGTTGGAGTGGCTTACTTTA
57.438
39.130
0.00
0.00
40.53
1.85
2876
4893
4.439253
AGAAGTTGGAGTGGCTTACTTT
57.561
40.909
0.00
0.00
40.53
2.66
2877
4894
4.137543
CAAGAAGTTGGAGTGGCTTACTT
58.862
43.478
0.00
0.00
40.53
2.24
2905
4922
4.423625
ACACAAAGAAGCCAGTAGAGTT
57.576
40.909
0.00
0.00
0.00
3.01
2920
4937
0.466555
AGCGGTTGGGCTAACACAAA
60.467
50.000
15.85
0.00
42.62
2.83
3050
5068
0.246635
CGTGGGGGACTGTACAGAAG
59.753
60.000
29.30
4.31
0.00
2.85
3052
5070
0.405198
TACGTGGGGGACTGTACAGA
59.595
55.000
29.30
2.44
0.00
3.41
3203
5222
2.349297
ACAGTCGAGCTTAGTTTCGG
57.651
50.000
8.01
0.00
37.42
4.30
3255
5274
3.070015
GGATTTTCATACATTGGGGCCTG
59.930
47.826
0.84
0.00
0.00
4.85
3360
5398
2.886913
TGGAATTCCTTCAACCATGCA
58.113
42.857
24.73
0.00
36.82
3.96
3382
5455
3.753797
AGAAAAAGAAGTGGAATCCTCGC
59.246
43.478
0.00
0.00
0.00
5.03
3801
5884
4.063967
ATGTTGGTCGCCGCTCGA
62.064
61.111
0.00
0.00
46.29
4.04
3820
5903
3.429822
CGTTTATCTTCTTCGTAGGGCCA
60.430
47.826
6.18
0.00
0.00
5.36
3843
5926
3.248171
CTTCTGACTACCGCGCGC
61.248
66.667
27.36
23.91
0.00
6.86
3847
5930
2.126071
TGCGCTTCTGACTACCGC
60.126
61.111
9.73
0.00
44.39
5.68
3854
5937
3.617143
ATGCTGGCTGCGCTTCTGA
62.617
57.895
9.73
0.00
46.63
3.27
3942
6054
5.883115
TGTAATAAAATGGTGATTGAGCGGA
59.117
36.000
0.00
0.00
0.00
5.54
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.