Multiple sequence alignment - TraesCS7D01G400600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G400600 chr7D 100.000 4339 0 0 1 4339 517577504 517573166 0.000000e+00 8013.0
1 TraesCS7D01G400600 chr7D 96.111 180 6 1 2106 2284 381797792 381797971 4.240000e-75 292.0
2 TraesCS7D01G400600 chr7D 80.851 282 35 9 3989 4261 545305235 545305506 2.050000e-48 204.0
3 TraesCS7D01G400600 chr7D 90.476 63 4 2 3649 3710 79628437 79628376 1.000000e-11 82.4
4 TraesCS7D01G400600 chr7A 94.983 1495 69 3 615 2108 592302548 592301059 0.000000e+00 2340.0
5 TraesCS7D01G400600 chr7A 92.549 926 37 12 2746 3659 592300307 592299402 0.000000e+00 1299.0
6 TraesCS7D01G400600 chr7A 91.952 497 22 5 2269 2748 592301061 592300566 0.000000e+00 680.0
7 TraesCS7D01G400600 chr7A 92.151 344 16 8 3771 4107 592299294 592298955 3.930000e-130 475.0
8 TraesCS7D01G400600 chr7A 91.892 296 10 8 106 395 592302960 592302673 6.760000e-108 401.0
9 TraesCS7D01G400600 chr7A 78.148 270 46 10 3997 4261 499376715 499376454 4.490000e-35 159.0
10 TraesCS7D01G400600 chr7A 94.444 54 3 0 3658 3711 736015943 736015996 2.780000e-12 84.2
11 TraesCS7D01G400600 chr7B 94.421 1201 53 6 909 2108 550667480 550666293 0.000000e+00 1834.0
12 TraesCS7D01G400600 chr7B 92.533 1058 44 15 2610 3654 550666034 550664999 0.000000e+00 1483.0
13 TraesCS7D01G400600 chr7B 81.579 570 52 25 3707 4262 550664998 550664468 5.190000e-114 422.0
14 TraesCS7D01G400600 chr7B 89.147 258 13 9 2269 2524 550666295 550666051 1.520000e-79 307.0
15 TraesCS7D01G400600 chr7B 87.149 249 11 6 106 354 550667713 550667486 3.330000e-66 263.0
16 TraesCS7D01G400600 chr7B 79.012 162 28 4 597 752 73166418 73166579 5.930000e-19 106.0
17 TraesCS7D01G400600 chr7B 95.833 48 2 0 28 75 550667771 550667724 1.290000e-10 78.7
18 TraesCS7D01G400600 chr7B 80.612 98 13 2 4175 4266 51228885 51228788 2.160000e-08 71.3
19 TraesCS7D01G400600 chr5D 92.067 479 23 8 409 887 564580901 564581364 0.000000e+00 660.0
20 TraesCS7D01G400600 chr5D 99.401 167 1 0 2106 2272 274578176 274578010 1.960000e-78 303.0
21 TraesCS7D01G400600 chr5D 94.681 188 9 1 2106 2292 391500294 391500481 1.530000e-74 291.0
22 TraesCS7D01G400600 chr5D 94.444 54 3 0 3650 3703 250069620 250069673 2.780000e-12 84.2
23 TraesCS7D01G400600 chr5D 92.727 55 4 0 3653 3707 554927664 554927718 3.600000e-11 80.5
24 TraesCS7D01G400600 chr4D 99.408 169 1 0 2106 2274 93338042 93338210 1.520000e-79 307.0
25 TraesCS7D01G400600 chr4D 98.817 169 2 0 2102 2270 477898791 477898959 7.050000e-78 302.0
26 TraesCS7D01G400600 chr2B 99.405 168 1 0 2103 2270 174794819 174794986 5.450000e-79 305.0
27 TraesCS7D01G400600 chr1D 96.667 180 5 1 2106 2284 331539429 331539250 9.120000e-77 298.0
28 TraesCS7D01G400600 chr3D 96.629 178 4 2 2105 2281 217587559 217587735 1.180000e-75 294.0
29 TraesCS7D01G400600 chr3D 86.301 73 7 3 3633 3703 26654102 26654173 4.650000e-10 76.8
30 TraesCS7D01G400600 chr6D 96.111 180 5 2 2102 2281 389700538 389700715 4.240000e-75 292.0
31 TraesCS7D01G400600 chr6D 76.358 313 46 11 401 702 410114623 410114918 4.520000e-30 143.0
32 TraesCS7D01G400600 chr6B 82.008 239 31 4 3996 4223 213395150 213395387 4.430000e-45 193.0
33 TraesCS7D01G400600 chr3A 84.746 177 21 4 3998 4173 520404121 520403950 5.770000e-39 172.0
34 TraesCS7D01G400600 chr2D 94.340 53 3 0 3658 3710 602947496 602947444 1.000000e-11 82.4
35 TraesCS7D01G400600 chr2D 91.525 59 4 1 3652 3710 619321004 619321061 3.600000e-11 80.5
36 TraesCS7D01G400600 chr3B 89.062 64 5 2 3648 3710 654335645 654335583 1.290000e-10 78.7
37 TraesCS7D01G400600 chr2A 88.060 67 6 1 3639 3703 16861465 16861399 1.290000e-10 78.7
38 TraesCS7D01G400600 chr6A 87.719 57 7 0 1810 1866 228627815 228627759 2.800000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G400600 chr7D 517573166 517577504 4338 True 8013.000000 8013 100.000000 1 4339 1 chr7D.!!$R2 4338
1 TraesCS7D01G400600 chr7A 592298955 592302960 4005 True 1039.000000 2340 92.705400 106 4107 5 chr7A.!!$R2 4001
2 TraesCS7D01G400600 chr7B 550664468 550667771 3303 True 731.283333 1834 90.110333 28 4262 6 chr7B.!!$R2 4234

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 94 0.242825 TTACCGTCTCGCTTCACCAG 59.757 55.0 0.00 0.0 0.0 4.00 F
554 657 0.325110 TTCCTCCTCTCCTGCTCCAG 60.325 60.0 0.00 0.0 0.0 3.86 F
1415 1519 0.535780 GGCGATGATCATTCTGGGCA 60.536 55.0 10.14 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1398 1502 0.873054 GCTGCCCAGAATGATCATCG 59.127 55.0 9.06 0.74 39.69 3.84 R
2097 2202 0.757188 ACGGAGGGAGTAGCATCAGG 60.757 60.0 0.00 0.00 0.00 3.86 R
3359 3756 0.389948 GTACCGCAGAGTTGAGTGGG 60.390 60.0 0.00 0.00 39.69 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.373226 TCGGTGTTCTTCTCCCGG 58.627 61.111 0.00 0.00 40.78 5.73
18 19 2.434359 CGGTGTTCTTCTCCCGGC 60.434 66.667 0.00 0.00 36.84 6.13
19 20 2.943978 CGGTGTTCTTCTCCCGGCT 61.944 63.158 0.00 0.00 36.84 5.52
20 21 1.376037 GGTGTTCTTCTCCCGGCTG 60.376 63.158 0.00 0.00 0.00 4.85
21 22 2.035442 GTGTTCTTCTCCCGGCTGC 61.035 63.158 0.00 0.00 0.00 5.25
22 23 2.815647 GTTCTTCTCCCGGCTGCG 60.816 66.667 0.00 0.00 0.00 5.18
23 24 2.994995 TTCTTCTCCCGGCTGCGA 60.995 61.111 0.00 0.00 0.00 5.10
24 25 3.006756 TTCTTCTCCCGGCTGCGAG 62.007 63.158 0.00 0.35 0.00 5.03
87 91 1.278238 CCATTACCGTCTCGCTTCAC 58.722 55.000 0.00 0.00 0.00 3.18
88 92 1.278238 CATTACCGTCTCGCTTCACC 58.722 55.000 0.00 0.00 0.00 4.02
89 93 0.892755 ATTACCGTCTCGCTTCACCA 59.107 50.000 0.00 0.00 0.00 4.17
90 94 0.242825 TTACCGTCTCGCTTCACCAG 59.757 55.000 0.00 0.00 0.00 4.00
91 95 1.592400 TACCGTCTCGCTTCACCAGG 61.592 60.000 0.00 0.00 0.00 4.45
92 96 2.811317 CGTCTCGCTTCACCAGGC 60.811 66.667 0.00 0.00 0.00 4.85
119 123 1.738700 GCTTCTCTTCTCCAGGCGAAG 60.739 57.143 12.47 12.47 39.32 3.79
172 176 4.485834 CGGATTCGACCGTCGCCA 62.486 66.667 16.24 5.62 46.70 5.69
173 177 2.582498 GGATTCGACCGTCGCCAG 60.582 66.667 16.24 0.00 40.21 4.85
174 178 2.582498 GATTCGACCGTCGCCAGG 60.582 66.667 16.24 0.00 40.21 4.45
175 179 4.814294 ATTCGACCGTCGCCAGGC 62.814 66.667 16.24 0.00 40.21 4.85
238 254 4.548513 CTCCTCCCTCCCTCCCGG 62.549 77.778 0.00 0.00 0.00 5.73
323 339 1.901948 AGATCCGCCGCCTCGAATA 60.902 57.895 0.00 0.00 0.00 1.75
324 340 1.444553 GATCCGCCGCCTCGAATAG 60.445 63.158 0.00 0.00 0.00 1.73
325 341 3.575351 ATCCGCCGCCTCGAATAGC 62.575 63.158 0.00 0.00 0.00 2.97
326 342 4.585526 CCGCCGCCTCGAATAGCA 62.586 66.667 3.08 0.00 0.00 3.49
354 374 0.988832 ACGGGCTCCAAATCAACCTA 59.011 50.000 0.00 0.00 0.00 3.08
410 513 1.844544 TTTCCTTACCACCCCGAGCC 61.845 60.000 0.00 0.00 0.00 4.70
439 542 3.967335 CCGCGACTCCCCTCGATC 61.967 72.222 8.23 0.00 35.58 3.69
440 543 2.902846 CGCGACTCCCCTCGATCT 60.903 66.667 0.00 0.00 35.58 2.75
441 544 2.725008 GCGACTCCCCTCGATCTG 59.275 66.667 0.00 0.00 35.58 2.90
442 545 2.122167 GCGACTCCCCTCGATCTGT 61.122 63.158 0.00 0.00 35.58 3.41
443 546 2.026522 CGACTCCCCTCGATCTGTC 58.973 63.158 0.00 0.00 35.58 3.51
444 547 0.464735 CGACTCCCCTCGATCTGTCT 60.465 60.000 0.00 0.00 35.58 3.41
445 548 1.028905 GACTCCCCTCGATCTGTCTG 58.971 60.000 0.00 0.00 0.00 3.51
446 549 1.040339 ACTCCCCTCGATCTGTCTGC 61.040 60.000 0.00 0.00 0.00 4.26
447 550 2.069465 CTCCCCTCGATCTGTCTGCG 62.069 65.000 0.00 0.00 0.00 5.18
448 551 2.279120 CCCTCGATCTGTCTGCGC 60.279 66.667 0.00 0.00 0.00 6.09
449 552 2.279120 CCTCGATCTGTCTGCGCC 60.279 66.667 4.18 0.00 0.00 6.53
450 553 2.653448 CTCGATCTGTCTGCGCCG 60.653 66.667 4.18 0.00 0.00 6.46
451 554 4.854784 TCGATCTGTCTGCGCCGC 62.855 66.667 4.18 0.00 0.00 6.53
471 574 2.285442 CCTCCCTTCGACCCCCTT 60.285 66.667 0.00 0.00 0.00 3.95
472 575 2.368011 CCTCCCTTCGACCCCCTTC 61.368 68.421 0.00 0.00 0.00 3.46
473 576 2.682494 TCCCTTCGACCCCCTTCG 60.682 66.667 0.00 0.00 40.53 3.79
474 577 2.682494 CCCTTCGACCCCCTTCGA 60.682 66.667 0.00 0.00 46.12 3.71
478 581 3.625099 TCGACCCCCTTCGAATCC 58.375 61.111 0.00 0.00 44.86 3.01
479 582 1.305465 TCGACCCCCTTCGAATCCA 60.305 57.895 0.00 0.00 44.86 3.41
480 583 1.144057 CGACCCCCTTCGAATCCAG 59.856 63.158 0.00 0.00 41.78 3.86
481 584 1.153147 GACCCCCTTCGAATCCAGC 60.153 63.158 0.00 0.00 0.00 4.85
482 585 2.203070 CCCCCTTCGAATCCAGCG 60.203 66.667 0.00 0.00 0.00 5.18
483 586 2.897350 CCCCTTCGAATCCAGCGC 60.897 66.667 0.00 0.00 0.00 5.92
484 587 2.897350 CCCTTCGAATCCAGCGCC 60.897 66.667 2.29 0.00 0.00 6.53
485 588 3.264897 CCTTCGAATCCAGCGCCG 61.265 66.667 2.29 0.00 0.00 6.46
486 589 3.929948 CTTCGAATCCAGCGCCGC 61.930 66.667 2.29 0.00 0.00 6.53
537 640 4.821589 CGCTGCCTCCCCTCGTTC 62.822 72.222 0.00 0.00 0.00 3.95
538 641 4.475135 GCTGCCTCCCCTCGTTCC 62.475 72.222 0.00 0.00 0.00 3.62
539 642 2.685380 CTGCCTCCCCTCGTTCCT 60.685 66.667 0.00 0.00 0.00 3.36
540 643 2.683933 TGCCTCCCCTCGTTCCTC 60.684 66.667 0.00 0.00 0.00 3.71
541 644 3.471806 GCCTCCCCTCGTTCCTCC 61.472 72.222 0.00 0.00 0.00 4.30
542 645 2.364961 CCTCCCCTCGTTCCTCCT 59.635 66.667 0.00 0.00 0.00 3.69
543 646 1.758906 CCTCCCCTCGTTCCTCCTC 60.759 68.421 0.00 0.00 0.00 3.71
544 647 1.308326 CTCCCCTCGTTCCTCCTCT 59.692 63.158 0.00 0.00 0.00 3.69
545 648 0.753848 CTCCCCTCGTTCCTCCTCTC 60.754 65.000 0.00 0.00 0.00 3.20
546 649 1.758906 CCCCTCGTTCCTCCTCTCC 60.759 68.421 0.00 0.00 0.00 3.71
547 650 1.308326 CCCTCGTTCCTCCTCTCCT 59.692 63.158 0.00 0.00 0.00 3.69
548 651 1.040339 CCCTCGTTCCTCCTCTCCTG 61.040 65.000 0.00 0.00 0.00 3.86
549 652 1.671901 CCTCGTTCCTCCTCTCCTGC 61.672 65.000 0.00 0.00 0.00 4.85
550 653 0.682855 CTCGTTCCTCCTCTCCTGCT 60.683 60.000 0.00 0.00 0.00 4.24
551 654 0.681564 TCGTTCCTCCTCTCCTGCTC 60.682 60.000 0.00 0.00 0.00 4.26
552 655 1.671901 CGTTCCTCCTCTCCTGCTCC 61.672 65.000 0.00 0.00 0.00 4.70
553 656 0.616111 GTTCCTCCTCTCCTGCTCCA 60.616 60.000 0.00 0.00 0.00 3.86
554 657 0.325110 TTCCTCCTCTCCTGCTCCAG 60.325 60.000 0.00 0.00 0.00 3.86
555 658 2.433994 CCTCCTCTCCTGCTCCAGC 61.434 68.421 0.00 0.00 42.50 4.85
556 659 2.364842 TCCTCTCCTGCTCCAGCC 60.365 66.667 0.00 0.00 41.18 4.85
557 660 3.847602 CCTCTCCTGCTCCAGCCG 61.848 72.222 0.00 0.00 41.18 5.52
558 661 4.527583 CTCTCCTGCTCCAGCCGC 62.528 72.222 0.00 0.00 41.18 6.53
577 680 3.050275 GGCAACGACCACTCCAGC 61.050 66.667 0.00 0.00 0.00 4.85
578 681 3.050275 GCAACGACCACTCCAGCC 61.050 66.667 0.00 0.00 0.00 4.85
579 682 2.738521 CAACGACCACTCCAGCCG 60.739 66.667 0.00 0.00 0.00 5.52
580 683 4.681978 AACGACCACTCCAGCCGC 62.682 66.667 0.00 0.00 0.00 6.53
599 702 3.554692 GCCGATGCCGACGTGAAG 61.555 66.667 0.00 0.00 38.22 3.02
600 703 3.554692 CCGATGCCGACGTGAAGC 61.555 66.667 0.00 0.00 38.22 3.86
601 704 3.554692 CGATGCCGACGTGAAGCC 61.555 66.667 0.00 0.00 38.22 4.35
602 705 3.554692 GATGCCGACGTGAAGCCG 61.555 66.667 0.00 0.00 0.00 5.52
603 706 3.982372 GATGCCGACGTGAAGCCGA 62.982 63.158 0.00 0.00 0.00 5.54
606 709 4.394078 CCGACGTGAAGCCGACGA 62.394 66.667 0.00 0.00 45.98 4.20
607 710 2.870161 CGACGTGAAGCCGACGAG 60.870 66.667 0.00 0.00 45.98 4.18
608 711 2.504244 GACGTGAAGCCGACGAGG 60.504 66.667 0.00 0.00 39.21 4.63
609 712 2.974489 GACGTGAAGCCGACGAGGA 61.974 63.158 0.00 0.00 45.00 3.71
610 713 2.267681 GACGTGAAGCCGACGAGGAT 62.268 60.000 0.00 0.00 45.00 3.24
611 714 1.874019 CGTGAAGCCGACGAGGATG 60.874 63.158 0.00 0.00 45.00 3.51
612 715 1.519455 GTGAAGCCGACGAGGATGG 60.519 63.158 0.00 0.00 45.00 3.51
613 716 1.680989 TGAAGCCGACGAGGATGGA 60.681 57.895 0.00 0.00 45.00 3.41
716 819 7.072454 TCTGCATATCTCAAGGTTAGGGTTAAT 59.928 37.037 0.00 0.00 0.00 1.40
740 843 4.397417 GGTCCATGTTCTTGATCTTGAAGG 59.603 45.833 0.00 0.00 0.00 3.46
772 875 9.668497 AATATGTCTTCTTAAGGTACCTGTTTC 57.332 33.333 17.14 2.09 0.00 2.78
776 879 6.996879 GTCTTCTTAAGGTACCTGTTTCCTTT 59.003 38.462 17.14 0.00 41.17 3.11
898 1001 1.183549 CACCTCCTAACGGCAGTAGT 58.816 55.000 0.00 0.00 0.00 2.73
965 1069 3.199946 TGCCAACCTAATCTAGGGTTCTG 59.800 47.826 4.78 0.00 45.80 3.02
974 1078 3.887621 TCTAGGGTTCTGTCGGAAATG 57.112 47.619 0.00 0.00 35.51 2.32
1059 1163 2.742372 GCCCACGAGTGCAACGAT 60.742 61.111 18.81 3.49 45.86 3.73
1194 1298 2.074948 CCCCTACCATGGCTGCTCT 61.075 63.158 13.04 0.00 0.00 4.09
1221 1325 4.265073 ACTGCTTTAAGAAGATTGCCGAT 58.735 39.130 7.01 0.00 34.71 4.18
1241 1345 1.819632 CCAACGCAGGTATGGCCTC 60.820 63.158 3.32 0.00 46.96 4.70
1255 1359 1.081175 GCCTCGCCTTTCAGTTTGC 60.081 57.895 0.00 0.00 0.00 3.68
1261 1365 4.545610 CTCGCCTTTCAGTTTGCATTTTA 58.454 39.130 0.00 0.00 0.00 1.52
1266 1370 5.752955 GCCTTTCAGTTTGCATTTTAGAACA 59.247 36.000 0.00 0.00 0.00 3.18
1270 1374 8.715191 TTTCAGTTTGCATTTTAGAACACAAT 57.285 26.923 0.00 0.00 0.00 2.71
1273 1377 8.143193 TCAGTTTGCATTTTAGAACACAATCAT 58.857 29.630 0.00 0.00 0.00 2.45
1283 1387 3.055819 AGAACACAATCATAGCCGTCTGT 60.056 43.478 0.00 0.00 0.00 3.41
1284 1388 2.621338 ACACAATCATAGCCGTCTGTG 58.379 47.619 0.00 0.00 39.96 3.66
1285 1389 2.028112 ACACAATCATAGCCGTCTGTGT 60.028 45.455 0.01 0.01 41.79 3.72
1286 1390 3.194755 ACACAATCATAGCCGTCTGTGTA 59.805 43.478 3.95 0.00 44.02 2.90
1296 1400 4.015084 AGCCGTCTGTGTATGTACTTACT 58.985 43.478 17.09 0.00 0.00 2.24
1369 1473 0.823356 TGCTGGAGGTTCTGGCAAAC 60.823 55.000 0.00 0.00 0.00 2.93
1415 1519 0.535780 GGCGATGATCATTCTGGGCA 60.536 55.000 10.14 0.00 0.00 5.36
1518 1622 9.334947 CTTAAGATGGTATGATGAACATTCTGT 57.665 33.333 0.00 0.00 40.07 3.41
1525 1629 3.499338 TGATGAACATTCTGTGCCCTTT 58.501 40.909 0.00 0.00 0.00 3.11
1553 1657 2.211250 AATTCAGCTGGTGCATCTGT 57.789 45.000 15.13 0.00 42.74 3.41
1718 1822 5.770162 GGAAGACAGGAAAAAGAAGATTGGA 59.230 40.000 0.00 0.00 0.00 3.53
1733 1837 4.084287 AGATTGGAAAGCTGCTTGATTCA 58.916 39.130 16.73 3.08 43.53 2.57
1751 1855 2.849942 TCAAATGGCCTGGATATGTCG 58.150 47.619 3.32 0.00 0.00 4.35
2010 2114 8.785329 AACACAATTTTGACTTGGTATGTTTT 57.215 26.923 0.00 0.00 0.00 2.43
2070 2175 5.594317 TGAGGCTTTGTTCTTTCTAAGCTTT 59.406 36.000 3.20 0.00 42.48 3.51
2103 2208 9.143631 GGAAAAATCAAGAAACATTACCTGATG 57.856 33.333 0.00 0.00 0.00 3.07
2105 2210 7.472334 AAATCAAGAAACATTACCTGATGCT 57.528 32.000 0.00 0.00 0.00 3.79
2106 2211 8.579850 AAATCAAGAAACATTACCTGATGCTA 57.420 30.769 0.00 0.00 0.00 3.49
2107 2212 6.985188 TCAAGAAACATTACCTGATGCTAC 57.015 37.500 0.00 0.00 0.00 3.58
2108 2213 6.711277 TCAAGAAACATTACCTGATGCTACT 58.289 36.000 0.00 0.00 0.00 2.57
2109 2214 6.818644 TCAAGAAACATTACCTGATGCTACTC 59.181 38.462 0.00 0.00 0.00 2.59
2110 2215 5.675538 AGAAACATTACCTGATGCTACTCC 58.324 41.667 0.00 0.00 0.00 3.85
2111 2216 4.423625 AACATTACCTGATGCTACTCCC 57.576 45.455 0.00 0.00 0.00 4.30
2112 2217 3.658725 ACATTACCTGATGCTACTCCCT 58.341 45.455 0.00 0.00 0.00 4.20
2113 2218 3.643792 ACATTACCTGATGCTACTCCCTC 59.356 47.826 0.00 0.00 0.00 4.30
2114 2219 2.383442 TACCTGATGCTACTCCCTCC 57.617 55.000 0.00 0.00 0.00 4.30
2115 2220 0.757188 ACCTGATGCTACTCCCTCCG 60.757 60.000 0.00 0.00 0.00 4.63
2116 2221 0.757188 CCTGATGCTACTCCCTCCGT 60.757 60.000 0.00 0.00 0.00 4.69
2117 2222 1.115467 CTGATGCTACTCCCTCCGTT 58.885 55.000 0.00 0.00 0.00 4.44
2118 2223 1.067821 CTGATGCTACTCCCTCCGTTC 59.932 57.143 0.00 0.00 0.00 3.95
2119 2224 0.389757 GATGCTACTCCCTCCGTTCC 59.610 60.000 0.00 0.00 0.00 3.62
2120 2225 0.032017 ATGCTACTCCCTCCGTTCCT 60.032 55.000 0.00 0.00 0.00 3.36
2121 2226 0.627451 TGCTACTCCCTCCGTTCCTA 59.373 55.000 0.00 0.00 0.00 2.94
2122 2227 1.006281 TGCTACTCCCTCCGTTCCTAA 59.994 52.381 0.00 0.00 0.00 2.69
2123 2228 2.105766 GCTACTCCCTCCGTTCCTAAA 58.894 52.381 0.00 0.00 0.00 1.85
2124 2229 2.699321 GCTACTCCCTCCGTTCCTAAAT 59.301 50.000 0.00 0.00 0.00 1.40
2125 2230 3.893813 GCTACTCCCTCCGTTCCTAAATA 59.106 47.826 0.00 0.00 0.00 1.40
2126 2231 4.527427 GCTACTCCCTCCGTTCCTAAATAT 59.473 45.833 0.00 0.00 0.00 1.28
2127 2232 5.011840 GCTACTCCCTCCGTTCCTAAATATT 59.988 44.000 0.00 0.00 0.00 1.28
2128 2233 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2129 2234 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2130 2235 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2131 2236 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2132 2237 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2133 2238 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2134 2239 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2135 2240 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2136 2241 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2137 2242 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2138 2243 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2139 2244 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2152 2257 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
2153 2258 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
2154 2259 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
2155 2260 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
2156 2261 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
2157 2262 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
2158 2263 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
2159 2264 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
2160 2265 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
2162 2267 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
2163 2268 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
2164 2269 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
2165 2270 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
2166 2271 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
2167 2272 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
2168 2273 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
2169 2274 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
2170 2275 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
2171 2276 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
2172 2277 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
2173 2278 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
2174 2279 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2175 2280 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
2176 2281 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2177 2282 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2178 2283 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2179 2284 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2180 2285 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2181 2286 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2182 2287 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2183 2288 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2184 2289 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2185 2290 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2186 2291 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
2218 2323 9.653287 AATATGTCTAAATACATCCGTATGTGG 57.347 33.333 3.56 0.00 45.99 4.17
2219 2324 6.474140 TGTCTAAATACATCCGTATGTGGT 57.526 37.500 3.56 0.00 45.99 4.16
2220 2325 7.585579 TGTCTAAATACATCCGTATGTGGTA 57.414 36.000 3.56 0.00 45.99 3.25
2221 2326 7.654568 TGTCTAAATACATCCGTATGTGGTAG 58.345 38.462 3.56 3.16 45.99 3.18
2222 2327 7.286087 TGTCTAAATACATCCGTATGTGGTAGT 59.714 37.037 3.56 0.00 45.99 2.73
2223 2328 7.806960 GTCTAAATACATCCGTATGTGGTAGTC 59.193 40.741 3.56 0.00 45.99 2.59
2224 2329 5.464030 AATACATCCGTATGTGGTAGTCC 57.536 43.478 3.56 0.00 45.99 3.85
2225 2330 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
2226 2331 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
2227 2332 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
2228 2333 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
2229 2334 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
2230 2335 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
2231 2336 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
2232 2337 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
2233 2338 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
2234 2339 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
2235 2340 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
2236 2341 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
2237 2342 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
2238 2343 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
2239 2344 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
2240 2345 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
2241 2346 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
2242 2347 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
2246 2351 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
2247 2352 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
2264 2369 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
2265 2370 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2266 2371 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2267 2372 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2288 2393 6.318648 GGGAGTACATGATTGCAAACTTATCA 59.681 38.462 1.71 2.11 33.25 2.15
2300 2405 2.684001 ACTTATCAAATGTCCGGCGA 57.316 45.000 9.30 0.00 0.00 5.54
2301 2406 3.194005 ACTTATCAAATGTCCGGCGAT 57.806 42.857 9.30 0.00 0.00 4.58
2312 2417 2.953648 TGTCCGGCGATGTTCTATTCTA 59.046 45.455 9.30 0.00 0.00 2.10
2473 2580 4.603131 ACCTGATTGCACACTTTATCCAT 58.397 39.130 0.00 0.00 0.00 3.41
2501 2608 9.135843 GGTTGTTTTAGTTTATCCTGCATTTAC 57.864 33.333 0.00 0.00 0.00 2.01
2511 2618 3.338249 TCCTGCATTTACTCAGTGAAGC 58.662 45.455 0.00 0.00 0.00 3.86
2524 2631 6.681777 ACTCAGTGAAGCCACAAATTTAATC 58.318 36.000 0.00 0.00 45.54 1.75
2525 2632 5.698832 TCAGTGAAGCCACAAATTTAATCG 58.301 37.500 0.00 0.00 45.54 3.34
2556 2680 5.118990 TGCTTCCTATCAACTTCTGCATAC 58.881 41.667 0.00 0.00 0.00 2.39
2608 2732 7.545362 AGCTGTGCTTGTTAGTAATATTGAG 57.455 36.000 0.00 0.00 33.89 3.02
2651 2775 8.668353 TGCTGAGTTGTATGATTCTTGATAAAC 58.332 33.333 0.00 0.00 0.00 2.01
3032 3417 1.024579 CGGCCTATCGCACCAACTTT 61.025 55.000 0.00 0.00 40.31 2.66
3245 3642 0.109412 ACTCGATCAACGACCGGAAC 60.109 55.000 9.46 0.00 46.45 3.62
3354 3751 1.611519 TTAAGGTTCTGGCGTTTGGG 58.388 50.000 0.00 0.00 0.00 4.12
3370 3767 2.047179 GGGTCGCCCACTCAACTC 60.047 66.667 9.72 0.00 44.65 3.01
3371 3768 2.584391 GGGTCGCCCACTCAACTCT 61.584 63.158 9.72 0.00 44.65 3.24
3373 3770 2.029844 GTCGCCCACTCAACTCTGC 61.030 63.158 0.00 0.00 0.00 4.26
3375 3772 2.743928 GCCCACTCAACTCTGCGG 60.744 66.667 0.00 0.00 0.00 5.69
3376 3773 2.743718 CCCACTCAACTCTGCGGT 59.256 61.111 0.00 0.00 0.00 5.68
3377 3774 1.972198 CCCACTCAACTCTGCGGTA 59.028 57.895 0.00 0.00 0.00 4.02
3422 3819 5.616270 TGCTTGTAACCTGTGTTCAGAATA 58.384 37.500 0.00 0.00 43.76 1.75
3552 3953 7.178274 TCCAATCTTGCCATTACTAAACATTGT 59.822 33.333 0.00 0.00 0.00 2.71
3553 3954 7.818930 CCAATCTTGCCATTACTAAACATTGTT 59.181 33.333 0.00 0.00 0.00 2.83
3645 4046 8.960591 CATATCTTTTTCCTGTACCTGTGAAAT 58.039 33.333 0.00 0.00 0.00 2.17
3659 4060 4.320494 CCTGTGAAATGCCTTGTTGACTAC 60.320 45.833 0.00 0.00 0.00 2.73
3660 4061 4.460263 TGTGAAATGCCTTGTTGACTACT 58.540 39.130 0.00 0.00 0.00 2.57
3661 4062 4.515191 TGTGAAATGCCTTGTTGACTACTC 59.485 41.667 0.00 0.00 0.00 2.59
3662 4063 4.072131 TGAAATGCCTTGTTGACTACTCC 58.928 43.478 0.00 0.00 0.00 3.85
3663 4064 2.789409 ATGCCTTGTTGACTACTCCC 57.211 50.000 0.00 0.00 0.00 4.30
3664 4065 1.729586 TGCCTTGTTGACTACTCCCT 58.270 50.000 0.00 0.00 0.00 4.20
3665 4066 1.623811 TGCCTTGTTGACTACTCCCTC 59.376 52.381 0.00 0.00 0.00 4.30
3666 4067 1.066071 GCCTTGTTGACTACTCCCTCC 60.066 57.143 0.00 0.00 0.00 4.30
3667 4068 1.204941 CCTTGTTGACTACTCCCTCCG 59.795 57.143 0.00 0.00 0.00 4.63
3668 4069 1.893801 CTTGTTGACTACTCCCTCCGT 59.106 52.381 0.00 0.00 0.00 4.69
3669 4070 1.542492 TGTTGACTACTCCCTCCGTC 58.458 55.000 0.00 0.00 0.00 4.79
3670 4071 0.816373 GTTGACTACTCCCTCCGTCC 59.184 60.000 0.00 0.00 0.00 4.79
3671 4072 0.702902 TTGACTACTCCCTCCGTCCT 59.297 55.000 0.00 0.00 0.00 3.85
3672 4073 0.034380 TGACTACTCCCTCCGTCCTG 60.034 60.000 0.00 0.00 0.00 3.86
3673 4074 0.034283 GACTACTCCCTCCGTCCTGT 60.034 60.000 0.00 0.00 0.00 4.00
3674 4075 1.211457 GACTACTCCCTCCGTCCTGTA 59.789 57.143 0.00 0.00 0.00 2.74
3675 4076 1.637553 ACTACTCCCTCCGTCCTGTAA 59.362 52.381 0.00 0.00 0.00 2.41
3676 4077 2.244252 ACTACTCCCTCCGTCCTGTAAT 59.756 50.000 0.00 0.00 0.00 1.89
3677 4078 3.461085 ACTACTCCCTCCGTCCTGTAATA 59.539 47.826 0.00 0.00 0.00 0.98
3678 4079 3.614568 ACTCCCTCCGTCCTGTAATAT 57.385 47.619 0.00 0.00 0.00 1.28
3679 4080 4.736611 ACTCCCTCCGTCCTGTAATATA 57.263 45.455 0.00 0.00 0.00 0.86
3680 4081 5.070823 ACTCCCTCCGTCCTGTAATATAA 57.929 43.478 0.00 0.00 0.00 0.98
3681 4082 5.078256 ACTCCCTCCGTCCTGTAATATAAG 58.922 45.833 0.00 0.00 0.00 1.73
3682 4083 5.163012 ACTCCCTCCGTCCTGTAATATAAGA 60.163 44.000 0.00 0.00 0.00 2.10
3683 4084 5.322754 TCCCTCCGTCCTGTAATATAAGAG 58.677 45.833 0.00 0.00 0.00 2.85
3684 4085 4.082136 CCCTCCGTCCTGTAATATAAGAGC 60.082 50.000 0.00 0.00 0.00 4.09
3685 4086 4.379603 CCTCCGTCCTGTAATATAAGAGCG 60.380 50.000 0.00 0.00 0.00 5.03
3686 4087 4.139786 TCCGTCCTGTAATATAAGAGCGT 58.860 43.478 0.00 0.00 0.00 5.07
3687 4088 4.581824 TCCGTCCTGTAATATAAGAGCGTT 59.418 41.667 0.00 0.00 0.00 4.84
3688 4089 5.068198 TCCGTCCTGTAATATAAGAGCGTTT 59.932 40.000 0.00 0.00 0.00 3.60
3689 4090 5.751990 CCGTCCTGTAATATAAGAGCGTTTT 59.248 40.000 0.00 0.00 0.00 2.43
3690 4091 6.257193 CCGTCCTGTAATATAAGAGCGTTTTT 59.743 38.462 0.00 0.00 0.00 1.94
3691 4092 7.117454 CGTCCTGTAATATAAGAGCGTTTTTG 58.883 38.462 0.00 0.00 0.00 2.44
3692 4093 7.009815 CGTCCTGTAATATAAGAGCGTTTTTGA 59.990 37.037 0.00 0.00 0.00 2.69
3693 4094 8.114905 GTCCTGTAATATAAGAGCGTTTTTGAC 58.885 37.037 0.00 0.00 0.00 3.18
3694 4095 7.820386 TCCTGTAATATAAGAGCGTTTTTGACA 59.180 33.333 0.00 0.00 0.00 3.58
3695 4096 7.903431 CCTGTAATATAAGAGCGTTTTTGACAC 59.097 37.037 0.00 0.00 0.00 3.67
3696 4097 8.542497 TGTAATATAAGAGCGTTTTTGACACT 57.458 30.769 0.00 0.00 0.00 3.55
3697 4098 9.642327 TGTAATATAAGAGCGTTTTTGACACTA 57.358 29.630 0.00 0.00 0.00 2.74
3698 4099 9.897349 GTAATATAAGAGCGTTTTTGACACTAC 57.103 33.333 0.00 0.00 0.00 2.73
3699 4100 8.542497 AATATAAGAGCGTTTTTGACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
3700 4101 4.531659 AAGAGCGTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
3701 4102 3.793559 AGAGCGTTTTTGACACTACACT 58.206 40.909 0.00 0.00 0.00 3.55
3702 4103 4.940463 AGAGCGTTTTTGACACTACACTA 58.060 39.130 0.00 0.00 0.00 2.74
3703 4104 5.353938 AGAGCGTTTTTGACACTACACTAA 58.646 37.500 0.00 0.00 0.00 2.24
3704 4105 5.989777 AGAGCGTTTTTGACACTACACTAAT 59.010 36.000 0.00 0.00 0.00 1.73
3705 4106 7.149973 AGAGCGTTTTTGACACTACACTAATA 58.850 34.615 0.00 0.00 0.00 0.98
3725 4126 5.954296 ATATCAAGTATGAAGTGCATGGC 57.046 39.130 0.00 0.00 39.49 4.40
3854 4322 0.029834 GCCTGCACATTTCTATGCCG 59.970 55.000 0.00 0.00 41.33 5.69
3855 4323 1.382522 CCTGCACATTTCTATGCCGT 58.617 50.000 0.00 0.00 41.33 5.68
3856 4324 1.331756 CCTGCACATTTCTATGCCGTC 59.668 52.381 0.00 0.00 41.33 4.79
3857 4325 1.004610 CTGCACATTTCTATGCCGTCG 60.005 52.381 0.00 0.00 41.33 5.12
3858 4326 1.286501 GCACATTTCTATGCCGTCGA 58.713 50.000 0.00 0.00 35.73 4.20
3859 4327 1.004927 GCACATTTCTATGCCGTCGAC 60.005 52.381 5.18 5.18 35.73 4.20
3860 4328 1.593006 CACATTTCTATGCCGTCGACC 59.407 52.381 10.58 0.00 35.03 4.79
3861 4329 0.852777 CATTTCTATGCCGTCGACCG 59.147 55.000 10.58 4.53 0.00 4.79
3886 4354 1.216678 TCACCCTGAACCAAACCATGT 59.783 47.619 0.00 0.00 0.00 3.21
3932 4400 0.673956 GAAGGAAGAAGGCCACGGAC 60.674 60.000 5.01 0.00 0.00 4.79
3933 4401 1.415672 AAGGAAGAAGGCCACGGACA 61.416 55.000 5.01 0.00 0.00 4.02
3937 4405 0.818040 AAGAAGGCCACGGACAACAC 60.818 55.000 5.01 0.00 0.00 3.32
3938 4406 1.525077 GAAGGCCACGGACAACACA 60.525 57.895 5.01 0.00 0.00 3.72
3939 4407 0.889186 GAAGGCCACGGACAACACAT 60.889 55.000 5.01 0.00 0.00 3.21
3940 4408 0.398696 AAGGCCACGGACAACACATA 59.601 50.000 5.01 0.00 0.00 2.29
3941 4409 0.618458 AGGCCACGGACAACACATAT 59.382 50.000 5.01 0.00 0.00 1.78
3942 4410 0.732571 GGCCACGGACAACACATATG 59.267 55.000 0.00 0.00 0.00 1.78
3991 4466 6.025749 TCTACATAGTGAGTTCCAGTGTTG 57.974 41.667 0.00 0.00 0.00 3.33
3994 4469 5.300752 ACATAGTGAGTTCCAGTGTTGAAG 58.699 41.667 0.00 0.00 0.00 3.02
4101 4579 4.099573 TCTTCTTTGGGCTAGGTTAGATCG 59.900 45.833 0.00 0.00 0.00 3.69
4107 4585 4.994282 TGGGCTAGGTTAGATCGATTAGA 58.006 43.478 0.00 0.00 0.00 2.10
4108 4586 5.580998 TGGGCTAGGTTAGATCGATTAGAT 58.419 41.667 0.00 0.00 43.51 1.98
4112 4590 6.153000 GGCTAGGTTAGATCGATTAGATGGAA 59.847 42.308 0.00 0.00 40.26 3.53
4122 4600 8.820831 AGATCGATTAGATGGAATAGATTGGTT 58.179 33.333 0.00 0.00 40.26 3.67
4126 4604 8.090831 CGATTAGATGGAATAGATTGGTTGAGA 58.909 37.037 0.00 0.00 0.00 3.27
4131 4609 3.499918 GGAATAGATTGGTTGAGATGCCG 59.500 47.826 0.00 0.00 0.00 5.69
4132 4610 2.620251 TAGATTGGTTGAGATGCCGG 57.380 50.000 0.00 0.00 0.00 6.13
4135 4613 0.552848 ATTGGTTGAGATGCCGGGAT 59.447 50.000 8.79 8.79 0.00 3.85
4139 4617 1.611673 GGTTGAGATGCCGGGATATGG 60.612 57.143 8.19 0.00 0.00 2.74
4148 4626 0.762418 CCGGGATATGGTGCCACTTA 59.238 55.000 0.00 0.00 38.45 2.24
4210 4688 3.433615 GTGAAACTCGTTAGCTTGCTCAT 59.566 43.478 0.00 0.00 0.00 2.90
4214 4692 5.786401 AACTCGTTAGCTTGCTCATTAAG 57.214 39.130 0.00 0.00 0.00 1.85
4236 4714 9.897744 TTAAGCTTGTTAATGAGTTGAATTCTG 57.102 29.630 9.86 0.00 0.00 3.02
4256 4734 3.485394 TGTGCTTGGCTCTGTTCATTAA 58.515 40.909 0.00 0.00 0.00 1.40
4262 4740 5.278463 GCTTGGCTCTGTTCATTAAGAAACA 60.278 40.000 5.59 5.59 38.13 2.83
4263 4741 6.707440 TTGGCTCTGTTCATTAAGAAACAA 57.293 33.333 6.83 0.00 38.13 2.83
4264 4742 6.317789 TGGCTCTGTTCATTAAGAAACAAG 57.682 37.500 6.83 7.94 38.13 3.16
4265 4743 5.157067 GGCTCTGTTCATTAAGAAACAAGC 58.843 41.667 18.65 18.65 38.13 4.01
4266 4744 5.157067 GCTCTGTTCATTAAGAAACAAGCC 58.843 41.667 17.49 5.44 38.13 4.35
4267 4745 5.048434 GCTCTGTTCATTAAGAAACAAGCCT 60.048 40.000 17.49 0.00 38.13 4.58
4268 4746 6.149474 GCTCTGTTCATTAAGAAACAAGCCTA 59.851 38.462 17.49 2.89 38.13 3.93
4269 4747 7.625185 GCTCTGTTCATTAAGAAACAAGCCTAG 60.625 40.741 17.49 0.00 38.13 3.02
4270 4748 6.149474 TCTGTTCATTAAGAAACAAGCCTAGC 59.851 38.462 6.83 0.00 38.13 3.42
4271 4749 6.003950 TGTTCATTAAGAAACAAGCCTAGCT 58.996 36.000 0.00 0.00 38.19 3.32
4272 4750 7.165485 TGTTCATTAAGAAACAAGCCTAGCTA 58.835 34.615 0.00 0.00 36.37 3.32
4273 4751 7.119262 TGTTCATTAAGAAACAAGCCTAGCTAC 59.881 37.037 3.62 0.00 36.37 3.58
4274 4752 6.113411 TCATTAAGAAACAAGCCTAGCTACC 58.887 40.000 0.00 0.00 38.25 3.18
4275 4753 2.674796 AGAAACAAGCCTAGCTACCG 57.325 50.000 0.00 0.00 38.25 4.02
4276 4754 2.176889 AGAAACAAGCCTAGCTACCGA 58.823 47.619 0.00 0.00 38.25 4.69
4277 4755 2.166664 AGAAACAAGCCTAGCTACCGAG 59.833 50.000 0.00 0.00 38.25 4.63
4278 4756 1.558233 AACAAGCCTAGCTACCGAGT 58.442 50.000 0.00 0.00 38.25 4.18
4279 4757 2.431954 ACAAGCCTAGCTACCGAGTA 57.568 50.000 0.00 0.00 38.25 2.59
4280 4758 2.946785 ACAAGCCTAGCTACCGAGTAT 58.053 47.619 0.00 0.00 38.25 2.12
4281 4759 3.297736 ACAAGCCTAGCTACCGAGTATT 58.702 45.455 0.00 0.00 38.25 1.89
4282 4760 4.467769 ACAAGCCTAGCTACCGAGTATTA 58.532 43.478 0.00 0.00 38.25 0.98
4283 4761 4.891756 ACAAGCCTAGCTACCGAGTATTAA 59.108 41.667 0.00 0.00 38.25 1.40
4284 4762 5.009811 ACAAGCCTAGCTACCGAGTATTAAG 59.990 44.000 0.00 0.00 38.25 1.85
4285 4763 3.506844 AGCCTAGCTACCGAGTATTAAGC 59.493 47.826 0.00 0.00 36.99 3.09
4286 4764 3.506844 GCCTAGCTACCGAGTATTAAGCT 59.493 47.826 0.42 0.42 45.14 3.74
4287 4765 4.379708 GCCTAGCTACCGAGTATTAAGCTC 60.380 50.000 0.00 1.04 42.33 4.09
4309 4787 4.187056 GCTACGAGCTTGTGGTCC 57.813 61.111 17.36 0.00 38.45 4.46
4310 4788 1.805945 GCTACGAGCTTGTGGTCCG 60.806 63.158 17.36 1.65 38.45 4.79
4311 4789 1.153823 CTACGAGCTTGTGGTCCGG 60.154 63.158 17.36 0.00 37.40 5.14
4312 4790 3.291101 TACGAGCTTGTGGTCCGGC 62.291 63.158 17.36 0.00 37.40 6.13
4316 4794 3.712907 GCTTGTGGTCCGGCCCTA 61.713 66.667 1.80 0.00 36.04 3.53
4317 4795 3.074281 CTTGTGGTCCGGCCCTAA 58.926 61.111 1.80 0.00 36.04 2.69
4318 4796 1.078426 CTTGTGGTCCGGCCCTAAG 60.078 63.158 1.80 3.80 36.04 2.18
4319 4797 2.536997 CTTGTGGTCCGGCCCTAAGG 62.537 65.000 1.80 0.00 36.04 2.69
4321 4799 4.342086 TGGTCCGGCCCTAAGGGT 62.342 66.667 1.80 0.00 46.51 4.34
4322 4800 3.477346 GGTCCGGCCCTAAGGGTC 61.477 72.222 0.00 0.00 46.51 4.46
4327 4805 3.723922 GGCCCTAAGGGTCGCCAA 61.724 66.667 6.78 0.00 46.51 4.52
4328 4806 2.124695 GCCCTAAGGGTCGCCAAG 60.125 66.667 0.00 0.00 46.51 3.61
4329 4807 2.124695 CCCTAAGGGTCGCCAAGC 60.125 66.667 0.00 0.00 38.25 4.01
4330 4808 2.670148 CCCTAAGGGTCGCCAAGCT 61.670 63.158 0.00 0.00 38.25 3.74
4331 4809 1.153349 CCTAAGGGTCGCCAAGCTC 60.153 63.158 0.00 0.00 0.00 4.09
4332 4810 1.519455 CTAAGGGTCGCCAAGCTCG 60.519 63.158 0.00 0.00 0.00 5.03
4333 4811 3.659089 TAAGGGTCGCCAAGCTCGC 62.659 63.158 0.00 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.434359 GCCGGGAGAAGAACACCG 60.434 66.667 2.18 0.00 45.57 4.94
2 3 1.376037 CAGCCGGGAGAAGAACACC 60.376 63.158 2.18 0.00 0.00 4.16
3 4 2.035442 GCAGCCGGGAGAAGAACAC 61.035 63.158 2.18 0.00 0.00 3.32
4 5 2.347490 GCAGCCGGGAGAAGAACA 59.653 61.111 2.18 0.00 0.00 3.18
5 6 2.815647 CGCAGCCGGGAGAAGAAC 60.816 66.667 2.18 0.00 0.00 3.01
6 7 2.994995 TCGCAGCCGGGAGAAGAA 60.995 61.111 2.18 0.00 34.56 2.52
38 39 0.674269 GTGGACGATTTGGGCCGTTA 60.674 55.000 0.00 0.00 39.30 3.18
39 40 1.969589 GTGGACGATTTGGGCCGTT 60.970 57.895 0.00 0.00 39.30 4.44
92 96 1.335182 TGGAGAAGAGAAGCGCTATCG 59.665 52.381 12.05 0.00 39.07 2.92
93 97 2.288152 CCTGGAGAAGAGAAGCGCTATC 60.288 54.545 12.05 12.83 0.00 2.08
94 98 1.686052 CCTGGAGAAGAGAAGCGCTAT 59.314 52.381 12.05 1.33 0.00 2.97
95 99 1.107114 CCTGGAGAAGAGAAGCGCTA 58.893 55.000 12.05 0.00 0.00 4.26
96 100 1.896694 CCTGGAGAAGAGAAGCGCT 59.103 57.895 2.64 2.64 0.00 5.92
97 101 1.813337 GCCTGGAGAAGAGAAGCGC 60.813 63.158 0.00 0.00 0.00 5.92
98 102 1.518133 CGCCTGGAGAAGAGAAGCG 60.518 63.158 0.00 0.00 35.82 4.68
99 103 0.247736 TTCGCCTGGAGAAGAGAAGC 59.752 55.000 8.90 0.00 0.00 3.86
100 104 1.738700 GCTTCGCCTGGAGAAGAGAAG 60.739 57.143 34.85 20.09 45.78 2.85
101 105 0.247736 GCTTCGCCTGGAGAAGAGAA 59.752 55.000 34.85 12.67 45.78 2.87
102 106 0.613292 AGCTTCGCCTGGAGAAGAGA 60.613 55.000 34.85 6.85 45.78 3.10
103 107 0.179113 GAGCTTCGCCTGGAGAAGAG 60.179 60.000 34.85 17.34 45.78 2.85
104 108 0.613292 AGAGCTTCGCCTGGAGAAGA 60.613 55.000 34.85 7.90 45.78 2.87
119 123 0.739561 ATCGTGACGAACCCTAGAGC 59.260 55.000 13.14 0.00 39.99 4.09
397 500 4.791069 GGAGGGCTCGGGGTGGTA 62.791 72.222 0.00 0.00 0.00 3.25
454 557 2.285442 AAGGGGGTCGAAGGGAGG 60.285 66.667 0.00 0.00 0.00 4.30
455 558 2.722201 CGAAGGGGGTCGAAGGGAG 61.722 68.421 0.00 0.00 43.86 4.30
456 559 2.682494 CGAAGGGGGTCGAAGGGA 60.682 66.667 0.00 0.00 43.86 4.20
457 560 2.682494 TCGAAGGGGGTCGAAGGG 60.682 66.667 0.00 0.00 46.52 3.95
462 565 1.144057 CTGGATTCGAAGGGGGTCG 59.856 63.158 3.35 0.00 42.48 4.79
463 566 1.153147 GCTGGATTCGAAGGGGGTC 60.153 63.158 3.35 0.00 0.00 4.46
464 567 2.998949 GCTGGATTCGAAGGGGGT 59.001 61.111 3.35 0.00 0.00 4.95
465 568 2.203070 CGCTGGATTCGAAGGGGG 60.203 66.667 3.35 0.00 0.00 5.40
466 569 2.897350 GCGCTGGATTCGAAGGGG 60.897 66.667 3.35 3.76 0.00 4.79
467 570 2.897350 GGCGCTGGATTCGAAGGG 60.897 66.667 7.64 0.00 0.00 3.95
468 571 3.264897 CGGCGCTGGATTCGAAGG 61.265 66.667 8.83 0.00 0.00 3.46
469 572 3.929948 GCGGCGCTGGATTCGAAG 61.930 66.667 26.86 0.00 0.00 3.79
520 623 4.821589 GAACGAGGGGAGGCAGCG 62.822 72.222 0.00 0.00 0.00 5.18
521 624 4.475135 GGAACGAGGGGAGGCAGC 62.475 72.222 0.00 0.00 0.00 5.25
522 625 2.685380 AGGAACGAGGGGAGGCAG 60.685 66.667 0.00 0.00 0.00 4.85
523 626 2.683933 GAGGAACGAGGGGAGGCA 60.684 66.667 0.00 0.00 0.00 4.75
524 627 3.471806 GGAGGAACGAGGGGAGGC 61.472 72.222 0.00 0.00 0.00 4.70
525 628 1.758906 GAGGAGGAACGAGGGGAGG 60.759 68.421 0.00 0.00 0.00 4.30
526 629 0.753848 GAGAGGAGGAACGAGGGGAG 60.754 65.000 0.00 0.00 0.00 4.30
527 630 1.306970 GAGAGGAGGAACGAGGGGA 59.693 63.158 0.00 0.00 0.00 4.81
528 631 1.758906 GGAGAGGAGGAACGAGGGG 60.759 68.421 0.00 0.00 0.00 4.79
529 632 1.040339 CAGGAGAGGAGGAACGAGGG 61.040 65.000 0.00 0.00 0.00 4.30
530 633 1.671901 GCAGGAGAGGAGGAACGAGG 61.672 65.000 0.00 0.00 0.00 4.63
531 634 0.682855 AGCAGGAGAGGAGGAACGAG 60.683 60.000 0.00 0.00 0.00 4.18
532 635 0.681564 GAGCAGGAGAGGAGGAACGA 60.682 60.000 0.00 0.00 0.00 3.85
533 636 1.671901 GGAGCAGGAGAGGAGGAACG 61.672 65.000 0.00 0.00 0.00 3.95
534 637 0.616111 TGGAGCAGGAGAGGAGGAAC 60.616 60.000 0.00 0.00 0.00 3.62
535 638 0.325110 CTGGAGCAGGAGAGGAGGAA 60.325 60.000 0.00 0.00 0.00 3.36
536 639 1.309347 CTGGAGCAGGAGAGGAGGA 59.691 63.158 0.00 0.00 0.00 3.71
537 640 2.433994 GCTGGAGCAGGAGAGGAGG 61.434 68.421 0.00 0.00 41.59 4.30
538 641 2.433994 GGCTGGAGCAGGAGAGGAG 61.434 68.421 0.20 0.00 44.36 3.69
539 642 2.364842 GGCTGGAGCAGGAGAGGA 60.365 66.667 0.20 0.00 44.36 3.71
540 643 3.847602 CGGCTGGAGCAGGAGAGG 61.848 72.222 0.20 0.00 44.36 3.69
541 644 4.527583 GCGGCTGGAGCAGGAGAG 62.528 72.222 0.20 0.00 44.36 3.20
558 661 4.308458 TGGAGTGGTCGTTGCCGG 62.308 66.667 0.00 0.00 33.95 6.13
559 662 2.738521 CTGGAGTGGTCGTTGCCG 60.739 66.667 0.00 0.00 0.00 5.69
560 663 3.050275 GCTGGAGTGGTCGTTGCC 61.050 66.667 0.00 0.00 0.00 4.52
561 664 3.050275 GGCTGGAGTGGTCGTTGC 61.050 66.667 0.00 0.00 0.00 4.17
562 665 2.738521 CGGCTGGAGTGGTCGTTG 60.739 66.667 0.00 0.00 0.00 4.10
563 666 4.681978 GCGGCTGGAGTGGTCGTT 62.682 66.667 0.00 0.00 0.00 3.85
582 685 3.554692 CTTCACGTCGGCATCGGC 61.555 66.667 0.00 0.00 37.69 5.54
583 686 3.554692 GCTTCACGTCGGCATCGG 61.555 66.667 0.00 0.00 36.95 4.18
584 687 3.554692 GGCTTCACGTCGGCATCG 61.555 66.667 0.00 0.00 37.82 3.84
585 688 3.554692 CGGCTTCACGTCGGCATC 61.555 66.667 0.00 0.00 37.01 3.91
586 689 4.063967 TCGGCTTCACGTCGGCAT 62.064 61.111 0.00 0.00 42.07 4.40
589 692 4.394078 TCGTCGGCTTCACGTCGG 62.394 66.667 0.00 0.00 43.46 4.79
590 693 2.870161 CTCGTCGGCTTCACGTCG 60.870 66.667 0.00 0.00 44.34 5.12
591 694 2.267681 ATCCTCGTCGGCTTCACGTC 62.268 60.000 0.00 0.00 38.45 4.34
592 695 2.341101 ATCCTCGTCGGCTTCACGT 61.341 57.895 0.00 0.00 38.45 4.49
593 696 1.874019 CATCCTCGTCGGCTTCACG 60.874 63.158 0.00 0.00 38.67 4.35
594 697 1.519455 CCATCCTCGTCGGCTTCAC 60.519 63.158 0.00 0.00 0.00 3.18
595 698 1.680989 TCCATCCTCGTCGGCTTCA 60.681 57.895 0.00 0.00 0.00 3.02
596 699 1.227002 GTCCATCCTCGTCGGCTTC 60.227 63.158 0.00 0.00 0.00 3.86
597 700 1.682684 AGTCCATCCTCGTCGGCTT 60.683 57.895 0.00 0.00 0.00 4.35
598 701 2.043852 AGTCCATCCTCGTCGGCT 60.044 61.111 0.00 0.00 0.00 5.52
599 702 2.105128 CAGTCCATCCTCGTCGGC 59.895 66.667 0.00 0.00 0.00 5.54
600 703 0.458543 CAACAGTCCATCCTCGTCGG 60.459 60.000 0.00 0.00 0.00 4.79
601 704 0.526211 TCAACAGTCCATCCTCGTCG 59.474 55.000 0.00 0.00 0.00 5.12
602 705 2.611518 CTTCAACAGTCCATCCTCGTC 58.388 52.381 0.00 0.00 0.00 4.20
603 706 1.338200 GCTTCAACAGTCCATCCTCGT 60.338 52.381 0.00 0.00 0.00 4.18
604 707 1.363744 GCTTCAACAGTCCATCCTCG 58.636 55.000 0.00 0.00 0.00 4.63
605 708 1.743996 GGCTTCAACAGTCCATCCTC 58.256 55.000 0.00 0.00 0.00 3.71
606 709 0.036010 CGGCTTCAACAGTCCATCCT 60.036 55.000 0.00 0.00 0.00 3.24
607 710 1.648467 GCGGCTTCAACAGTCCATCC 61.648 60.000 0.00 0.00 0.00 3.51
608 711 1.648467 GGCGGCTTCAACAGTCCATC 61.648 60.000 0.00 0.00 0.00 3.51
609 712 1.675641 GGCGGCTTCAACAGTCCAT 60.676 57.895 0.00 0.00 0.00 3.41
610 713 2.281484 GGCGGCTTCAACAGTCCA 60.281 61.111 0.00 0.00 0.00 4.02
611 714 3.423154 CGGCGGCTTCAACAGTCC 61.423 66.667 7.61 0.00 0.00 3.85
612 715 3.423154 CCGGCGGCTTCAACAGTC 61.423 66.667 15.42 0.00 0.00 3.51
638 741 0.324645 AAATCCGCAGATGGCCCTTT 60.325 50.000 0.00 0.00 40.31 3.11
716 819 4.639078 TCAAGATCAAGAACATGGACCA 57.361 40.909 0.00 0.00 0.00 4.02
772 875 4.142271 TGTTTGGTTCTTGCAGTGTAAAGG 60.142 41.667 7.57 0.00 0.00 3.11
776 879 5.164954 GTTTTGTTTGGTTCTTGCAGTGTA 58.835 37.500 0.00 0.00 0.00 2.90
858 961 4.789629 GTGTTTGTTTCGTTGAGTGGTAAC 59.210 41.667 0.00 0.00 0.00 2.50
862 965 2.422127 AGGTGTTTGTTTCGTTGAGTGG 59.578 45.455 0.00 0.00 0.00 4.00
902 1005 1.956620 GCAGCTGCGAGTCCGTTAAC 61.957 60.000 25.23 0.00 38.24 2.01
965 1069 2.395690 CGTCTGCGCATTTCCGAC 59.604 61.111 12.24 13.84 0.00 4.79
990 1094 0.324738 ACTTCCCCATCGAGCTCTCA 60.325 55.000 12.85 0.00 0.00 3.27
1059 1163 2.346803 GCGATCTTGTTGAGGCAGTAA 58.653 47.619 0.00 0.00 0.00 2.24
1194 1298 5.643777 GGCAATCTTCTTAAAGCAGTACTCA 59.356 40.000 0.00 0.00 32.18 3.41
1241 1345 4.545610 TCTAAAATGCAAACTGAAAGGCG 58.454 39.130 0.00 0.00 39.30 5.52
1255 1359 6.785191 ACGGCTATGATTGTGTTCTAAAATG 58.215 36.000 0.00 0.00 0.00 2.32
1261 1365 3.055819 ACAGACGGCTATGATTGTGTTCT 60.056 43.478 0.00 0.00 0.00 3.01
1266 1370 4.141937 ACATACACAGACGGCTATGATTGT 60.142 41.667 1.95 3.11 0.00 2.71
1270 1374 4.204799 AGTACATACACAGACGGCTATGA 58.795 43.478 1.95 0.00 0.00 2.15
1273 1377 5.065602 CAGTAAGTACATACACAGACGGCTA 59.934 44.000 10.63 0.00 0.00 3.93
1296 1400 8.721478 GCTAACAAGAAGTCAATCAAATAGACA 58.279 33.333 0.00 0.00 34.80 3.41
1392 1496 1.730612 CCAGAATGATCATCGCCATCG 59.269 52.381 9.06 0.00 39.69 3.84
1398 1502 0.873054 GCTGCCCAGAATGATCATCG 59.127 55.000 9.06 0.74 39.69 3.84
1405 1509 1.453379 CCTCCTGCTGCCCAGAATG 60.453 63.158 0.00 0.00 44.64 2.67
1518 1622 6.374333 CAGCTGAATTAGTTAACTAAAGGGCA 59.626 38.462 27.24 20.41 41.27 5.36
1525 1629 5.800296 TGCACCAGCTGAATTAGTTAACTA 58.200 37.500 17.39 11.38 42.74 2.24
1553 1657 5.302059 CGAAGGAGATAAACATCCTAGACCA 59.698 44.000 0.00 0.00 45.39 4.02
1674 1778 6.903534 TCTTCCAACCACTTCTCCTTAGATAT 59.096 38.462 0.00 0.00 0.00 1.63
1718 1822 3.332034 GCCATTTGAATCAAGCAGCTTT 58.668 40.909 4.38 0.00 0.00 3.51
1733 1837 3.117888 ACTTCGACATATCCAGGCCATTT 60.118 43.478 5.01 0.00 0.00 2.32
1751 1855 5.419542 TGTGTATCCAGCATGTAAGACTTC 58.580 41.667 0.00 0.00 0.00 3.01
2010 2114 6.663093 ACAAACAGCTGGGTGATTATCAAATA 59.337 34.615 19.93 0.00 0.00 1.40
2097 2202 0.757188 ACGGAGGGAGTAGCATCAGG 60.757 60.000 0.00 0.00 0.00 3.86
2103 2208 1.772836 TTAGGAACGGAGGGAGTAGC 58.227 55.000 0.00 0.00 0.00 3.58
2105 2210 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
2106 2211 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
2107 2212 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2108 2213 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2109 2214 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2110 2215 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2111 2216 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2112 2217 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2113 2218 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2126 2231 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
2127 2232 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
2128 2233 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
2129 2234 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
2130 2235 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
2131 2236 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
2132 2237 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
2133 2238 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
2134 2239 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
2135 2240 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
2136 2241 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
2137 2242 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
2138 2243 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
2139 2244 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
2140 2245 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
2141 2246 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
2142 2247 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
2143 2248 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
2144 2249 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
2145 2250 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
2146 2251 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
2147 2252 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
2148 2253 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
2149 2254 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
2150 2255 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
2151 2256 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
2152 2257 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2153 2258 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2154 2259 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2155 2260 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2156 2261 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2157 2262 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2158 2263 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2159 2264 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2160 2265 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2161 2266 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2162 2267 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2163 2268 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2164 2269 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2192 2297 9.653287 CCACATACGGATGTATTTAGACATATT 57.347 33.333 14.23 0.00 44.82 1.28
2193 2298 8.812972 ACCACATACGGATGTATTTAGACATAT 58.187 33.333 14.23 0.00 44.82 1.78
2194 2299 8.185506 ACCACATACGGATGTATTTAGACATA 57.814 34.615 14.23 0.00 44.82 2.29
2195 2300 7.062749 ACCACATACGGATGTATTTAGACAT 57.937 36.000 14.23 0.00 44.82 3.06
2196 2301 6.474140 ACCACATACGGATGTATTTAGACA 57.526 37.500 14.23 0.00 44.82 3.41
2197 2302 7.655490 ACTACCACATACGGATGTATTTAGAC 58.345 38.462 14.23 0.00 44.82 2.59
2198 2303 7.040201 GGACTACCACATACGGATGTATTTAGA 60.040 40.741 14.23 0.00 44.82 2.10
2199 2304 7.088905 GGACTACCACATACGGATGTATTTAG 58.911 42.308 14.23 15.31 44.82 1.85
2200 2305 6.550481 TGGACTACCACATACGGATGTATTTA 59.450 38.462 14.23 4.09 44.82 1.40
2201 2306 5.364446 TGGACTACCACATACGGATGTATTT 59.636 40.000 14.23 3.01 44.82 1.40
2202 2307 4.897076 TGGACTACCACATACGGATGTATT 59.103 41.667 14.23 5.72 44.82 1.89
2203 2308 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
2204 2309 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
2220 2325 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
2221 2326 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
2238 2343 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
2239 2344 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
2240 2345 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2241 2346 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2242 2347 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2243 2348 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2244 2349 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2245 2350 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2246 2351 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2247 2352 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
2248 2353 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
2249 2354 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
2250 2355 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
2251 2356 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
2252 2357 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
2253 2358 2.242965 TCATGTACTCCCTCCGTTCCTA 59.757 50.000 0.00 0.00 0.00 2.94
2254 2359 1.006758 TCATGTACTCCCTCCGTTCCT 59.993 52.381 0.00 0.00 0.00 3.36
2255 2360 1.481871 TCATGTACTCCCTCCGTTCC 58.518 55.000 0.00 0.00 0.00 3.62
2256 2361 3.458189 CAATCATGTACTCCCTCCGTTC 58.542 50.000 0.00 0.00 0.00 3.95
2257 2362 2.420129 GCAATCATGTACTCCCTCCGTT 60.420 50.000 0.00 0.00 0.00 4.44
2258 2363 1.139058 GCAATCATGTACTCCCTCCGT 59.861 52.381 0.00 0.00 0.00 4.69
2259 2364 1.138859 TGCAATCATGTACTCCCTCCG 59.861 52.381 0.00 0.00 0.00 4.63
2260 2365 3.281727 TTGCAATCATGTACTCCCTCC 57.718 47.619 0.00 0.00 0.00 4.30
2261 2366 4.265073 AGTTTGCAATCATGTACTCCCTC 58.735 43.478 10.05 0.00 0.00 4.30
2262 2367 4.307032 AGTTTGCAATCATGTACTCCCT 57.693 40.909 10.05 0.00 0.00 4.20
2263 2368 6.318648 TGATAAGTTTGCAATCATGTACTCCC 59.681 38.462 10.05 0.00 0.00 4.30
2264 2369 7.320443 TGATAAGTTTGCAATCATGTACTCC 57.680 36.000 10.05 0.19 0.00 3.85
2265 2370 9.793252 ATTTGATAAGTTTGCAATCATGTACTC 57.207 29.630 10.05 0.00 30.17 2.59
2266 2371 9.577110 CATTTGATAAGTTTGCAATCATGTACT 57.423 29.630 10.05 1.95 30.17 2.73
2267 2372 9.357652 ACATTTGATAAGTTTGCAATCATGTAC 57.642 29.630 10.05 0.00 30.17 2.90
2288 2393 2.684001 TAGAACATCGCCGGACATTT 57.316 45.000 5.05 0.00 0.00 2.32
2473 2580 6.716934 TGCAGGATAAACTAAAACAACCAA 57.283 33.333 0.00 0.00 0.00 3.67
2501 2608 5.796935 CGATTAAATTTGTGGCTTCACTGAG 59.203 40.000 0.00 0.00 41.73 3.35
2511 2618 6.808212 AGCATTTCTCACGATTAAATTTGTGG 59.192 34.615 0.00 0.00 33.25 4.17
2524 2631 4.872691 AGTTGATAGGAAGCATTTCTCACG 59.127 41.667 0.00 0.00 33.68 4.35
2525 2632 6.597280 AGAAGTTGATAGGAAGCATTTCTCAC 59.403 38.462 0.00 0.00 33.68 3.51
2543 2667 9.926751 CAATATTAGAGTTGTATGCAGAAGTTG 57.073 33.333 0.00 0.00 0.00 3.16
2556 2680 9.643693 AAAACTTCCAATGCAATATTAGAGTTG 57.356 29.630 0.00 0.00 0.00 3.16
2602 2726 6.571731 GCACTCACAGTACCTGTTACTCAATA 60.572 42.308 0.00 0.00 42.59 1.90
2608 2732 3.005472 TCAGCACTCACAGTACCTGTTAC 59.995 47.826 0.00 0.00 42.59 2.50
2764 3149 8.601047 TGCCTATACAGCTTCATAGAAGATAT 57.399 34.615 10.72 7.20 0.00 1.63
3018 3403 6.170506 AGAATACAGAAAAGTTGGTGCGATA 58.829 36.000 0.00 0.00 0.00 2.92
3021 3406 4.749245 AGAATACAGAAAAGTTGGTGCG 57.251 40.909 0.00 0.00 0.00 5.34
3058 3445 8.793592 CAAGTACTTTGGCTTCCTTACTAAAAT 58.206 33.333 5.07 0.00 32.95 1.82
3179 3576 2.037136 CCTCCTGCTGAACGCCTTG 61.037 63.158 0.00 0.00 38.05 3.61
3335 3732 1.611519 CCCAAACGCCAGAACCTTAA 58.388 50.000 0.00 0.00 0.00 1.85
3339 3736 2.203437 ACCCCAAACGCCAGAACC 60.203 61.111 0.00 0.00 0.00 3.62
3359 3756 0.389948 GTACCGCAGAGTTGAGTGGG 60.390 60.000 0.00 0.00 39.69 4.61
3370 3767 1.376812 GGGGGAAACAGTACCGCAG 60.377 63.158 13.23 0.00 40.20 5.18
3371 3768 2.751688 GGGGGAAACAGTACCGCA 59.248 61.111 13.23 0.00 40.20 5.69
3645 4046 1.623811 GAGGGAGTAGTCAACAAGGCA 59.376 52.381 0.00 0.00 0.00 4.75
3659 4060 5.322754 TCTTATATTACAGGACGGAGGGAG 58.677 45.833 0.00 0.00 0.00 4.30
3660 4061 5.322754 CTCTTATATTACAGGACGGAGGGA 58.677 45.833 0.00 0.00 0.00 4.20
3661 4062 4.082136 GCTCTTATATTACAGGACGGAGGG 60.082 50.000 0.00 0.00 0.00 4.30
3662 4063 4.379603 CGCTCTTATATTACAGGACGGAGG 60.380 50.000 0.00 0.00 0.00 4.30
3663 4064 4.215827 ACGCTCTTATATTACAGGACGGAG 59.784 45.833 0.00 0.00 0.00 4.63
3664 4065 4.139786 ACGCTCTTATATTACAGGACGGA 58.860 43.478 0.00 0.00 0.00 4.69
3665 4066 4.500603 ACGCTCTTATATTACAGGACGG 57.499 45.455 0.00 0.00 0.00 4.79
3666 4067 6.823678 AAAACGCTCTTATATTACAGGACG 57.176 37.500 0.00 0.00 0.00 4.79
3667 4068 8.114905 GTCAAAAACGCTCTTATATTACAGGAC 58.885 37.037 0.00 0.00 0.00 3.85
3668 4069 7.820386 TGTCAAAAACGCTCTTATATTACAGGA 59.180 33.333 0.00 0.00 0.00 3.86
3669 4070 7.903431 GTGTCAAAAACGCTCTTATATTACAGG 59.097 37.037 0.00 0.00 35.42 4.00
3670 4071 8.656849 AGTGTCAAAAACGCTCTTATATTACAG 58.343 33.333 0.00 0.00 45.69 2.74
3671 4072 8.542497 AGTGTCAAAAACGCTCTTATATTACA 57.458 30.769 0.00 0.00 45.69 2.41
3672 4073 9.897349 GTAGTGTCAAAAACGCTCTTATATTAC 57.103 33.333 0.00 0.00 45.69 1.89
3673 4074 9.642327 TGTAGTGTCAAAAACGCTCTTATATTA 57.358 29.630 0.00 0.00 45.69 0.98
3674 4075 8.440833 GTGTAGTGTCAAAAACGCTCTTATATT 58.559 33.333 0.00 0.00 45.69 1.28
3675 4076 7.817962 AGTGTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 0.00 0.00 45.69 0.86
3676 4077 7.149973 AGTGTAGTGTCAAAAACGCTCTTATA 58.850 34.615 0.00 0.00 45.69 0.98
3677 4078 5.989777 AGTGTAGTGTCAAAAACGCTCTTAT 59.010 36.000 0.00 0.00 45.69 1.73
3678 4079 5.353938 AGTGTAGTGTCAAAAACGCTCTTA 58.646 37.500 0.00 0.00 45.69 2.10
3679 4080 4.189231 AGTGTAGTGTCAAAAACGCTCTT 58.811 39.130 0.00 0.00 45.69 2.85
3680 4081 3.793559 AGTGTAGTGTCAAAAACGCTCT 58.206 40.909 0.00 0.00 45.69 4.09
3681 4082 5.646467 TTAGTGTAGTGTCAAAAACGCTC 57.354 39.130 0.00 0.00 45.69 5.03
3683 4084 7.735500 TGATATTAGTGTAGTGTCAAAAACGC 58.264 34.615 0.00 0.00 38.74 4.84
3684 4085 9.741168 CTTGATATTAGTGTAGTGTCAAAAACG 57.259 33.333 0.00 0.00 28.39 3.60
3694 4095 9.751542 GCACTTCATACTTGATATTAGTGTAGT 57.248 33.333 0.00 0.00 36.54 2.73
3695 4096 9.750125 TGCACTTCATACTTGATATTAGTGTAG 57.250 33.333 0.00 0.00 36.54 2.74
3697 4098 9.049523 CATGCACTTCATACTTGATATTAGTGT 57.950 33.333 0.00 0.00 36.54 3.55
3698 4099 8.501580 CCATGCACTTCATACTTGATATTAGTG 58.498 37.037 0.00 0.00 36.89 2.74
3699 4100 7.173907 GCCATGCACTTCATACTTGATATTAGT 59.826 37.037 0.00 0.00 33.19 2.24
3700 4101 7.389884 AGCCATGCACTTCATACTTGATATTAG 59.610 37.037 0.00 0.00 33.19 1.73
3701 4102 7.226441 AGCCATGCACTTCATACTTGATATTA 58.774 34.615 0.00 0.00 33.19 0.98
3702 4103 6.066690 AGCCATGCACTTCATACTTGATATT 58.933 36.000 0.00 0.00 33.19 1.28
3703 4104 5.628130 AGCCATGCACTTCATACTTGATAT 58.372 37.500 0.00 0.00 33.19 1.63
3704 4105 5.039920 AGCCATGCACTTCATACTTGATA 57.960 39.130 0.00 0.00 33.19 2.15
3705 4106 3.894759 AGCCATGCACTTCATACTTGAT 58.105 40.909 0.00 0.00 33.19 2.57
3745 4146 5.284660 GCAAAATTCATCAGCTAAACGACAG 59.715 40.000 0.00 0.00 0.00 3.51
3754 4158 3.056322 GGAGGTTGCAAAATTCATCAGCT 60.056 43.478 0.00 0.00 0.00 4.24
3862 4330 1.886542 GGTTTGGTTCAGGGTGATCAC 59.113 52.381 17.91 17.91 0.00 3.06
3863 4331 1.496857 TGGTTTGGTTCAGGGTGATCA 59.503 47.619 0.00 0.00 0.00 2.92
3864 4332 2.286365 TGGTTTGGTTCAGGGTGATC 57.714 50.000 0.00 0.00 0.00 2.92
3865 4333 2.158325 ACATGGTTTGGTTCAGGGTGAT 60.158 45.455 0.00 0.00 0.00 3.06
3866 4334 1.216678 ACATGGTTTGGTTCAGGGTGA 59.783 47.619 0.00 0.00 0.00 4.02
3867 4335 1.340889 CACATGGTTTGGTTCAGGGTG 59.659 52.381 0.00 0.00 0.00 4.61
3868 4336 1.216678 TCACATGGTTTGGTTCAGGGT 59.783 47.619 0.00 0.00 0.00 4.34
3869 4337 1.993956 TCACATGGTTTGGTTCAGGG 58.006 50.000 0.00 0.00 0.00 4.45
3870 4338 3.799917 GCTTTCACATGGTTTGGTTCAGG 60.800 47.826 0.00 0.00 0.00 3.86
3871 4339 3.181477 TGCTTTCACATGGTTTGGTTCAG 60.181 43.478 0.00 0.00 0.00 3.02
3872 4340 2.762887 TGCTTTCACATGGTTTGGTTCA 59.237 40.909 0.00 0.00 0.00 3.18
3873 4341 3.123050 GTGCTTTCACATGGTTTGGTTC 58.877 45.455 0.00 0.00 42.66 3.62
3874 4342 2.158971 GGTGCTTTCACATGGTTTGGTT 60.159 45.455 0.00 0.00 44.87 3.67
3875 4343 1.412343 GGTGCTTTCACATGGTTTGGT 59.588 47.619 0.00 0.00 44.87 3.67
3876 4344 1.688197 AGGTGCTTTCACATGGTTTGG 59.312 47.619 0.00 0.00 44.87 3.28
3886 4354 1.211703 TCCACTGAACAGGTGCTTTCA 59.788 47.619 6.76 0.00 33.78 2.69
3932 4400 7.445402 CCCTTCCTTCTATAACCATATGTGTTG 59.555 40.741 15.66 0.00 0.00 3.33
3933 4401 7.349859 TCCCTTCCTTCTATAACCATATGTGTT 59.650 37.037 12.34 12.34 0.00 3.32
3937 4405 7.978925 AGTTCCCTTCCTTCTATAACCATATG 58.021 38.462 0.00 0.00 0.00 1.78
3938 4406 8.582891 AAGTTCCCTTCCTTCTATAACCATAT 57.417 34.615 0.00 0.00 0.00 1.78
3939 4407 8.931568 GTAAGTTCCCTTCCTTCTATAACCATA 58.068 37.037 0.00 0.00 31.89 2.74
3940 4408 6.910259 AAGTTCCCTTCCTTCTATAACCAT 57.090 37.500 0.00 0.00 0.00 3.55
3941 4409 6.731919 TGTAAGTTCCCTTCCTTCTATAACCA 59.268 38.462 0.00 0.00 31.89 3.67
3942 4410 7.046652 GTGTAAGTTCCCTTCCTTCTATAACC 58.953 42.308 0.00 0.00 31.89 2.85
3966 4440 5.326069 ACACTGGAACTCACTATGTAGAGT 58.674 41.667 0.00 0.00 46.45 3.24
3967 4441 5.906113 ACACTGGAACTCACTATGTAGAG 57.094 43.478 0.00 0.00 37.87 2.43
3968 4442 5.773176 TCAACACTGGAACTCACTATGTAGA 59.227 40.000 0.00 0.00 0.00 2.59
3969 4443 6.025749 TCAACACTGGAACTCACTATGTAG 57.974 41.667 0.00 0.00 0.00 2.74
3991 4466 2.723273 CAACAGGGGGTAATGTCCTTC 58.277 52.381 0.00 0.00 0.00 3.46
3994 4469 0.331616 AGCAACAGGGGGTAATGTCC 59.668 55.000 0.00 0.00 0.00 4.02
4050 4525 0.995024 AGCATACCCCCTCATATGGC 59.005 55.000 2.13 0.00 30.75 4.40
4101 4579 9.956640 ATCTCAACCAATCTATTCCATCTAATC 57.043 33.333 0.00 0.00 0.00 1.75
4107 4585 5.075493 GGCATCTCAACCAATCTATTCCAT 58.925 41.667 0.00 0.00 0.00 3.41
4108 4586 4.464008 GGCATCTCAACCAATCTATTCCA 58.536 43.478 0.00 0.00 0.00 3.53
4112 4590 2.224621 CCCGGCATCTCAACCAATCTAT 60.225 50.000 0.00 0.00 0.00 1.98
4118 4596 1.072173 CATATCCCGGCATCTCAACCA 59.928 52.381 0.00 0.00 0.00 3.67
4122 4600 0.686789 CACCATATCCCGGCATCTCA 59.313 55.000 0.00 0.00 0.00 3.27
4126 4604 2.436109 GGCACCATATCCCGGCAT 59.564 61.111 0.00 0.00 0.00 4.40
4131 4609 3.290948 TGTTAAGTGGCACCATATCCC 57.709 47.619 15.27 0.00 0.00 3.85
4132 4610 6.952773 TTTATGTTAAGTGGCACCATATCC 57.047 37.500 15.27 3.18 0.00 2.59
4139 4617 8.980143 ACACATATTTTTATGTTAAGTGGCAC 57.020 30.769 10.29 10.29 38.51 5.01
4210 4688 9.897744 CAGAATTCAACTCATTAACAAGCTTAA 57.102 29.630 8.44 0.00 0.00 1.85
4214 4692 6.088616 GCACAGAATTCAACTCATTAACAAGC 59.911 38.462 8.44 0.00 0.00 4.01
4217 4695 6.882610 AGCACAGAATTCAACTCATTAACA 57.117 33.333 8.44 0.00 0.00 2.41
4227 4705 2.555325 CAGAGCCAAGCACAGAATTCAA 59.445 45.455 8.44 0.00 0.00 2.69
4232 4710 1.134128 TGAACAGAGCCAAGCACAGAA 60.134 47.619 0.00 0.00 0.00 3.02
4234 4712 1.531423 ATGAACAGAGCCAAGCACAG 58.469 50.000 0.00 0.00 0.00 3.66
4236 4714 3.753272 TCTTAATGAACAGAGCCAAGCAC 59.247 43.478 0.00 0.00 0.00 4.40
4256 4734 2.166664 CTCGGTAGCTAGGCTTGTTTCT 59.833 50.000 0.00 0.00 40.44 2.52
4262 4740 4.022155 GCTTAATACTCGGTAGCTAGGCTT 60.022 45.833 0.00 0.00 40.44 4.35
4263 4741 3.506844 GCTTAATACTCGGTAGCTAGGCT 59.493 47.826 0.00 0.00 43.41 4.58
4264 4742 3.506844 AGCTTAATACTCGGTAGCTAGGC 59.493 47.826 0.00 0.00 40.19 3.93
4265 4743 5.299582 GAGCTTAATACTCGGTAGCTAGG 57.700 47.826 0.00 0.00 41.90 3.02
4292 4770 1.805945 CGGACCACAAGCTCGTAGC 60.806 63.158 0.00 0.00 42.84 3.58
4293 4771 1.153823 CCGGACCACAAGCTCGTAG 60.154 63.158 0.00 0.00 0.00 3.51
4294 4772 2.967397 CCGGACCACAAGCTCGTA 59.033 61.111 0.00 0.00 0.00 3.43
4295 4773 4.681978 GCCGGACCACAAGCTCGT 62.682 66.667 5.05 0.00 0.00 4.18
4299 4777 3.262448 TTAGGGCCGGACCACAAGC 62.262 63.158 32.91 0.00 42.05 4.01
4300 4778 1.078426 CTTAGGGCCGGACCACAAG 60.078 63.158 32.91 26.65 42.05 3.16
4301 4779 2.598787 CCTTAGGGCCGGACCACAA 61.599 63.158 32.91 21.36 42.05 3.33
4302 4780 3.006728 CCTTAGGGCCGGACCACA 61.007 66.667 32.91 14.07 42.05 4.17
4303 4781 3.793888 CCCTTAGGGCCGGACCAC 61.794 72.222 32.91 11.72 42.05 4.16
4313 4791 1.153349 GAGCTTGGCGACCCTTAGG 60.153 63.158 0.00 0.00 40.04 2.69
4314 4792 1.519455 CGAGCTTGGCGACCCTTAG 60.519 63.158 0.00 0.00 0.00 2.18
4315 4793 2.577059 CGAGCTTGGCGACCCTTA 59.423 61.111 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.