Multiple sequence alignment - TraesCS7D01G400200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G400200 chr7D 100.000 2615 0 0 1 2615 517152690 517155304 0.000000e+00 4830.0
1 TraesCS7D01G400200 chr7D 95.385 65 1 1 184 248 84893643 84893581 4.600000e-18 102.0
2 TraesCS7D01G400200 chr7D 92.958 71 2 2 184 254 528060381 528060314 1.660000e-17 100.0
3 TraesCS7D01G400200 chr7A 93.112 2410 109 30 245 2615 591879111 591881502 0.000000e+00 3478.0
4 TraesCS7D01G400200 chr7A 95.385 65 1 1 184 248 200010950 200010888 4.600000e-18 102.0
5 TraesCS7D01G400200 chr7B 96.038 1262 38 11 450 1708 549930084 549931336 0.000000e+00 2043.0
6 TraesCS7D01G400200 chr7B 87.887 743 39 22 1721 2424 549931387 549932117 0.000000e+00 826.0
7 TraesCS7D01G400200 chr7B 92.271 207 7 3 245 450 549926397 549926595 4.260000e-73 285.0
8 TraesCS7D01G400200 chr7B 90.164 183 15 3 1 180 549926208 549926390 4.350000e-58 235.0
9 TraesCS7D01G400200 chr6D 93.056 72 2 2 184 254 436375989 436375920 4.600000e-18 102.0
10 TraesCS7D01G400200 chr4A 94.030 67 2 1 184 250 639988823 639988887 1.660000e-17 100.0
11 TraesCS7D01G400200 chr3D 92.857 70 2 2 184 252 409442160 409442093 5.960000e-17 99.0
12 TraesCS7D01G400200 chr2D 90.667 75 3 3 184 258 522707161 522707231 2.140000e-16 97.1
13 TraesCS7D01G400200 chr4D 88.462 78 5 3 184 261 230489578 230489651 9.970000e-15 91.6
14 TraesCS7D01G400200 chr2B 85.106 94 7 6 187 277 543530663 543530574 3.580000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G400200 chr7D 517152690 517155304 2614 False 4830.00 4830 100.000 1 2615 1 chr7D.!!$F1 2614
1 TraesCS7D01G400200 chr7A 591879111 591881502 2391 False 3478.00 3478 93.112 245 2615 1 chr7A.!!$F1 2370
2 TraesCS7D01G400200 chr7B 549926208 549932117 5909 False 847.25 2043 91.590 1 2424 4 chr7B.!!$F1 2423

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 155 0.461339 TCTTAATCCAGGTTCGCGGC 60.461 55.0 6.13 0.0 0.0 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1943 5524 0.893727 ATCCAACCGCAACCAAGACC 60.894 55.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 23 4.956034 CTCCGCTCGTTTAAGATACATG 57.044 45.455 0.00 0.00 0.00 3.21
27 29 3.254892 TCGTTTAAGATACATGTGCGCA 58.745 40.909 5.66 5.66 0.00 6.09
64 66 4.265893 TGTTGCTGGAAGTTAAGTGTGAA 58.734 39.130 0.00 0.00 35.30 3.18
77 79 1.837439 AGTGTGAAACCTGGTGTCAGA 59.163 47.619 19.99 16.20 40.76 3.27
82 84 2.158623 TGAAACCTGGTGTCAGATTGCT 60.159 45.455 15.80 0.00 43.49 3.91
114 116 2.094390 TGCTCAGGCGTTATTCTTACGT 60.094 45.455 0.00 0.00 40.92 3.57
115 117 2.281762 GCTCAGGCGTTATTCTTACGTG 59.718 50.000 0.00 0.00 40.92 4.49
125 127 5.276678 CGTTATTCTTACGTGCATTCCGAAT 60.277 40.000 0.00 4.71 34.47 3.34
150 152 4.759516 TTGTTTCTTAATCCAGGTTCGC 57.240 40.909 0.00 0.00 0.00 4.70
151 153 2.739913 TGTTTCTTAATCCAGGTTCGCG 59.260 45.455 0.00 0.00 0.00 5.87
153 155 0.461339 TCTTAATCCAGGTTCGCGGC 60.461 55.000 6.13 0.00 0.00 6.53
177 180 7.591426 GGCTTGCAAGATAATTAGTTATTTCCG 59.409 37.037 30.39 0.00 30.75 4.30
179 182 8.740123 TTGCAAGATAATTAGTTATTTCCGGA 57.260 30.769 0.00 0.00 30.75 5.14
180 183 8.378172 TGCAAGATAATTAGTTATTTCCGGAG 57.622 34.615 3.34 0.00 30.75 4.63
181 184 7.041372 TGCAAGATAATTAGTTATTTCCGGAGC 60.041 37.037 3.34 0.00 30.75 4.70
183 186 7.317722 AGATAATTAGTTATTTCCGGAGCCT 57.682 36.000 3.34 0.00 30.75 4.58
185 188 9.047947 AGATAATTAGTTATTTCCGGAGCCTAT 57.952 33.333 3.34 0.00 30.75 2.57
186 189 9.668497 GATAATTAGTTATTTCCGGAGCCTATT 57.332 33.333 3.34 1.14 30.75 1.73
189 192 8.843885 ATTAGTTATTTCCGGAGCCTATTAAC 57.156 34.615 3.34 7.33 0.00 2.01
190 193 6.496144 AGTTATTTCCGGAGCCTATTAACT 57.504 37.500 3.34 9.45 0.00 2.24
191 194 6.896883 AGTTATTTCCGGAGCCTATTAACTT 58.103 36.000 3.34 0.00 0.00 2.66
192 195 7.344134 AGTTATTTCCGGAGCCTATTAACTTT 58.656 34.615 3.34 0.00 0.00 2.66
193 196 8.488668 AGTTATTTCCGGAGCCTATTAACTTTA 58.511 33.333 3.34 0.00 0.00 1.85
194 197 8.771766 GTTATTTCCGGAGCCTATTAACTTTAG 58.228 37.037 3.34 0.00 0.00 1.85
195 198 5.945144 TTCCGGAGCCTATTAACTTTAGT 57.055 39.130 3.34 0.00 0.00 2.24
196 199 7.422465 TTTCCGGAGCCTATTAACTTTAGTA 57.578 36.000 3.34 0.00 0.00 1.82
197 200 7.607615 TTCCGGAGCCTATTAACTTTAGTAT 57.392 36.000 3.34 0.00 0.00 2.12
198 201 8.710749 TTCCGGAGCCTATTAACTTTAGTATA 57.289 34.615 3.34 0.00 0.00 1.47
199 202 8.710749 TCCGGAGCCTATTAACTTTAGTATAA 57.289 34.615 0.00 0.00 0.00 0.98
200 203 9.146586 TCCGGAGCCTATTAACTTTAGTATAAA 57.853 33.333 0.00 0.00 0.00 1.40
201 204 9.420551 CCGGAGCCTATTAACTTTAGTATAAAG 57.579 37.037 0.00 7.56 0.00 1.85
202 205 9.978044 CGGAGCCTATTAACTTTAGTATAAAGT 57.022 33.333 8.72 8.72 41.82 2.66
234 237 8.893563 ATAAAGTTGGGTCATCTATTTTGGAA 57.106 30.769 0.00 0.00 0.00 3.53
235 238 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
236 239 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
237 240 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
238 241 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
239 242 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
240 243 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
241 244 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
242 245 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
243 246 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
264 267 5.515626 GGAGTAGTAAGTTAGTGCGACATTG 59.484 44.000 0.16 0.00 0.00 2.82
292 295 3.243201 GCCTATTAGAAGTGTGCATTGGC 60.243 47.826 0.00 0.00 41.68 4.52
442 447 6.095720 CACCGGGGCTATAAAAGATGTTTTAA 59.904 38.462 11.38 2.08 40.65 1.52
528 4022 9.396022 AGAAGTTTCTTTTTCTTGATGTGTAGA 57.604 29.630 0.00 0.00 32.55 2.59
540 4034 3.119137 TGATGTGTAGATGTCTTCACCCG 60.119 47.826 14.55 0.00 41.64 5.28
555 4049 2.046285 CCCGCCCAGTGTCCAAATC 61.046 63.158 0.00 0.00 0.00 2.17
573 4067 7.006509 TCCAAATCAAAAAGGAGAACATCTCT 58.993 34.615 7.27 0.00 42.95 3.10
846 4348 1.138661 TGCAAGGGCCAAACTGAAAAG 59.861 47.619 6.18 0.00 40.13 2.27
852 4354 4.769688 AGGGCCAAACTGAAAAGAAAAAG 58.230 39.130 6.18 0.00 0.00 2.27
1645 5154 4.741239 AGGCCCATCCCCACTCGT 62.741 66.667 0.00 0.00 34.51 4.18
1657 5166 0.669318 CCACTCGTTTCGCCTTGCTA 60.669 55.000 0.00 0.00 0.00 3.49
1667 5176 2.905075 TCGCCTTGCTACGTACTACTA 58.095 47.619 0.00 0.00 0.00 1.82
1819 5366 7.642586 GTGTAATTAATGATAAGGTGGCGAAAC 59.357 37.037 0.00 0.00 0.00 2.78
1943 5524 1.758936 TGCATCTTGCTGGATTCAGG 58.241 50.000 2.40 0.00 45.31 3.86
2170 5757 7.868415 AGTACATCGAGTTTGGATCTTAATAGC 59.132 37.037 0.00 0.00 0.00 2.97
2175 5762 5.237344 CGAGTTTGGATCTTAATAGCCTTGG 59.763 44.000 0.00 0.00 0.00 3.61
2190 5777 1.867233 CCTTGGACACTCTTCAACGTG 59.133 52.381 0.00 0.00 37.18 4.49
2210 5800 1.683917 GCACCTCTGTCGTCCTATGAT 59.316 52.381 0.00 0.00 0.00 2.45
2226 5816 8.712363 CGTCCTATGATGGTGTTTATAAGATTG 58.288 37.037 0.00 0.00 0.00 2.67
2301 5892 0.733909 GTTTGGGCAGAGCATTTCGC 60.734 55.000 0.00 0.00 42.91 4.70
2329 5920 1.740585 CCCACGAATTTATTGTCGGCA 59.259 47.619 0.00 0.00 41.56 5.69
2386 5977 1.378382 TCATGGGCCCACAATGACG 60.378 57.895 31.51 9.82 0.00 4.35
2391 5982 2.625823 GGCCCACAATGACGGTGTG 61.626 63.158 0.00 0.00 44.90 3.82
2411 6004 1.565106 GCATAACGCTAGAAGCCGC 59.435 57.895 0.00 0.00 38.18 6.53
2430 6023 1.890174 GGCCAACTATGCGCCTTTT 59.110 52.632 4.18 0.00 38.86 2.27
2431 6024 0.458370 GGCCAACTATGCGCCTTTTG 60.458 55.000 4.18 2.89 38.86 2.44
2432 6025 0.458370 GCCAACTATGCGCCTTTTGG 60.458 55.000 18.06 18.06 39.86 3.28
2433 6026 1.173043 CCAACTATGCGCCTTTTGGA 58.827 50.000 17.69 0.00 44.07 3.53
2449 6042 6.415573 CCTTTTGGAGGTAGCTACATAGTTT 58.584 40.000 24.75 3.42 44.07 2.66
2450 6043 6.316390 CCTTTTGGAGGTAGCTACATAGTTTG 59.684 42.308 24.75 7.82 44.07 2.93
2451 6044 5.353394 TTGGAGGTAGCTACATAGTTTGG 57.647 43.478 24.75 0.00 0.00 3.28
2465 6058 1.888512 AGTTTGGCCTACACATTGCAG 59.111 47.619 3.32 0.00 0.00 4.41
2473 6066 3.368427 GCCTACACATTGCAGTAGAGACA 60.368 47.826 11.37 0.00 40.02 3.41
2553 6156 4.262765 CCACTTCGGTTAGGGTAAACTCTT 60.263 45.833 0.00 0.00 0.00 2.85
2567 6170 3.864789 AACTCTTCCTTCCAAGCTTCA 57.135 42.857 0.00 0.00 0.00 3.02
2599 6202 1.330655 TGGATTCGCCTGTCCTCTCC 61.331 60.000 0.00 0.00 37.63 3.71
2605 6208 2.888863 CCTGTCCTCTCCGTCTGC 59.111 66.667 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 23 1.640428 TGCTAGACTTACATGCGCAC 58.360 50.000 14.90 0.00 0.00 5.34
55 57 3.452990 TCTGACACCAGGTTTCACACTTA 59.547 43.478 4.13 0.00 40.76 2.24
64 66 3.788227 TTAGCAATCTGACACCAGGTT 57.212 42.857 0.00 0.00 44.16 3.50
137 139 0.742990 CAAGCCGCGAACCTGGATTA 60.743 55.000 8.23 0.00 31.51 1.75
145 147 0.446222 TTATCTTGCAAGCCGCGAAC 59.554 50.000 21.99 0.00 46.97 3.95
146 148 1.378531 ATTATCTTGCAAGCCGCGAA 58.621 45.000 21.99 10.51 46.97 4.70
148 150 2.287915 ACTAATTATCTTGCAAGCCGCG 59.712 45.455 21.99 0.00 46.97 6.46
149 151 3.971032 ACTAATTATCTTGCAAGCCGC 57.029 42.857 21.99 0.00 42.89 6.53
150 152 7.591426 GGAAATAACTAATTATCTTGCAAGCCG 59.409 37.037 21.99 0.00 30.27 5.52
151 153 7.591426 CGGAAATAACTAATTATCTTGCAAGCC 59.409 37.037 21.99 9.68 30.27 4.35
153 155 8.836413 TCCGGAAATAACTAATTATCTTGCAAG 58.164 33.333 20.81 20.81 30.27 4.01
208 211 9.983024 TTCCAAAATAGATGACCCAACTTTATA 57.017 29.630 0.00 0.00 0.00 0.98
209 212 8.749354 GTTCCAAAATAGATGACCCAACTTTAT 58.251 33.333 0.00 0.00 0.00 1.40
210 213 7.094549 CGTTCCAAAATAGATGACCCAACTTTA 60.095 37.037 0.00 0.00 0.00 1.85
211 214 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
212 215 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
213 216 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
214 217 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
215 218 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
216 219 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
217 220 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
218 221 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
219 222 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
220 223 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
221 224 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
222 225 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
223 226 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
224 227 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
225 228 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
226 229 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
227 230 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
228 231 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
229 232 2.905415 TACTACTCCCTCCGTTCCAA 57.095 50.000 0.00 0.00 0.00 3.53
230 233 2.042162 ACTTACTACTCCCTCCGTTCCA 59.958 50.000 0.00 0.00 0.00 3.53
231 234 2.732763 ACTTACTACTCCCTCCGTTCC 58.267 52.381 0.00 0.00 0.00 3.62
232 235 4.946772 ACTAACTTACTACTCCCTCCGTTC 59.053 45.833 0.00 0.00 0.00 3.95
233 236 4.704057 CACTAACTTACTACTCCCTCCGTT 59.296 45.833 0.00 0.00 0.00 4.44
234 237 4.268359 CACTAACTTACTACTCCCTCCGT 58.732 47.826 0.00 0.00 0.00 4.69
235 238 3.066481 GCACTAACTTACTACTCCCTCCG 59.934 52.174 0.00 0.00 0.00 4.63
236 239 3.066481 CGCACTAACTTACTACTCCCTCC 59.934 52.174 0.00 0.00 0.00 4.30
237 240 3.944015 TCGCACTAACTTACTACTCCCTC 59.056 47.826 0.00 0.00 0.00 4.30
238 241 3.693578 GTCGCACTAACTTACTACTCCCT 59.306 47.826 0.00 0.00 0.00 4.20
239 242 3.441572 TGTCGCACTAACTTACTACTCCC 59.558 47.826 0.00 0.00 0.00 4.30
240 243 4.691860 TGTCGCACTAACTTACTACTCC 57.308 45.455 0.00 0.00 0.00 3.85
241 244 6.033619 CACAATGTCGCACTAACTTACTACTC 59.966 42.308 0.00 0.00 0.00 2.59
242 245 5.862323 CACAATGTCGCACTAACTTACTACT 59.138 40.000 0.00 0.00 0.00 2.57
243 246 5.444218 GCACAATGTCGCACTAACTTACTAC 60.444 44.000 3.59 0.00 0.00 2.73
264 267 3.181506 GCACACTTCTAATAGGCTTGCAC 60.182 47.826 0.00 0.00 0.00 4.57
528 4022 2.224159 ACTGGGCGGGTGAAGACAT 61.224 57.895 0.00 0.00 0.00 3.06
540 4034 3.392882 CTTTTTGATTTGGACACTGGGC 58.607 45.455 0.00 0.00 0.00 5.36
555 4049 4.823989 ACCACAGAGATGTTCTCCTTTTTG 59.176 41.667 0.98 0.00 44.42 2.44
994 4500 2.268920 GGAGCGAGGCATTGTGGA 59.731 61.111 0.00 0.00 0.00 4.02
996 4502 3.197790 CCGGAGCGAGGCATTGTG 61.198 66.667 0.00 0.00 0.00 3.33
1645 5154 2.489329 AGTAGTACGTAGCAAGGCGAAA 59.511 45.455 0.00 0.00 0.00 3.46
1681 5190 1.817099 CACCAGGATTCGAGCTGCC 60.817 63.158 0.00 0.00 0.00 4.85
1819 5366 4.130118 AGAGAACACACACTTTGGCTTAG 58.870 43.478 0.00 0.00 0.00 2.18
1943 5524 0.893727 ATCCAACCGCAACCAAGACC 60.894 55.000 0.00 0.00 0.00 3.85
2108 5689 3.443681 ACAGGGCAATTATGAAACTTCGG 59.556 43.478 0.00 0.00 0.00 4.30
2112 5693 7.062322 TCATATCACAGGGCAATTATGAAACT 58.938 34.615 0.00 0.00 0.00 2.66
2113 5694 7.275888 TCATATCACAGGGCAATTATGAAAC 57.724 36.000 0.00 0.00 0.00 2.78
2170 5757 1.867233 CACGTTGAAGAGTGTCCAAGG 59.133 52.381 0.00 0.00 33.97 3.61
2175 5762 0.582005 GGTGCACGTTGAAGAGTGTC 59.418 55.000 11.45 0.00 40.26 3.67
2190 5777 1.103803 TCATAGGACGACAGAGGTGC 58.896 55.000 0.00 0.00 0.00 5.01
2226 5816 8.516268 GCAAGTACTACGTACGTTTACTTAATC 58.484 37.037 32.82 25.38 43.05 1.75
2231 5821 5.390991 GGAGCAAGTACTACGTACGTTTACT 60.391 44.000 27.92 26.32 43.05 2.24
2245 5835 0.389948 CACGGGTCAGGAGCAAGTAC 60.390 60.000 0.56 0.00 0.00 2.73
2246 5836 0.830444 ACACGGGTCAGGAGCAAGTA 60.830 55.000 0.56 0.00 0.00 2.24
2247 5837 1.696097 AACACGGGTCAGGAGCAAGT 61.696 55.000 0.00 0.00 0.00 3.16
2248 5838 0.951040 GAACACGGGTCAGGAGCAAG 60.951 60.000 0.00 0.00 0.00 4.01
2249 5839 1.070786 GAACACGGGTCAGGAGCAA 59.929 57.895 0.00 0.00 0.00 3.91
2301 5892 1.444836 TAAATTCGTGGGAACAGCCG 58.555 50.000 0.00 0.00 44.46 5.52
2329 5920 0.392863 TGCCATGTCGCACAGCTTAT 60.393 50.000 0.00 0.00 32.62 1.73
2430 6023 3.134081 GCCAAACTATGTAGCTACCTCCA 59.866 47.826 21.01 2.67 0.00 3.86
2431 6024 3.494573 GGCCAAACTATGTAGCTACCTCC 60.495 52.174 21.01 3.54 0.00 4.30
2432 6025 3.388350 AGGCCAAACTATGTAGCTACCTC 59.612 47.826 21.01 0.00 0.00 3.85
2433 6026 3.385115 AGGCCAAACTATGTAGCTACCT 58.615 45.455 21.01 13.86 0.00 3.08
2449 6042 1.905894 TCTACTGCAATGTGTAGGCCA 59.094 47.619 5.01 0.00 37.37 5.36
2450 6043 2.168521 TCTCTACTGCAATGTGTAGGCC 59.831 50.000 10.08 0.00 37.37 5.19
2451 6044 3.190874 GTCTCTACTGCAATGTGTAGGC 58.809 50.000 10.08 0.00 37.37 3.93
2532 6125 4.020751 GGAAGAGTTTACCCTAACCGAAGT 60.021 45.833 0.00 0.00 0.00 3.01
2533 6126 4.222366 AGGAAGAGTTTACCCTAACCGAAG 59.778 45.833 0.00 0.00 0.00 3.79
2534 6127 4.162651 AGGAAGAGTTTACCCTAACCGAA 58.837 43.478 0.00 0.00 0.00 4.30
2535 6128 3.782992 AGGAAGAGTTTACCCTAACCGA 58.217 45.455 0.00 0.00 0.00 4.69
2545 6148 5.063880 GTGAAGCTTGGAAGGAAGAGTTTA 58.936 41.667 2.10 0.00 0.00 2.01
2549 6152 2.224621 TGGTGAAGCTTGGAAGGAAGAG 60.225 50.000 2.10 0.00 0.00 2.85
2567 6170 0.610232 GAATCCACAGGCTTGCTGGT 60.610 55.000 14.12 0.68 31.49 4.00
2573 6176 1.377725 CAGGCGAATCCACAGGCTT 60.378 57.895 0.00 0.00 38.79 4.35
2577 6180 0.460987 GAGGACAGGCGAATCCACAG 60.461 60.000 7.35 0.00 37.47 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.