Multiple sequence alignment - TraesCS7D01G400100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G400100 chr7D 100.000 2836 0 0 1 2836 517113805 517116640 0.000000e+00 5238
1 TraesCS7D01G400100 chr7D 80.911 812 97 33 991 1789 55221733 55222499 3.150000e-164 588
2 TraesCS7D01G400100 chr7D 80.268 821 101 33 994 1789 54990458 54989674 1.910000e-156 562
3 TraesCS7D01G400100 chr7B 90.813 1894 90 22 264 2148 549602453 549604271 0.000000e+00 2457
4 TraesCS7D01G400100 chr7B 87.351 419 27 14 2149 2545 549604317 549604731 9.260000e-125 457
5 TraesCS7D01G400100 chr7B 89.597 298 24 2 2535 2826 549614098 549614394 3.450000e-99 372
6 TraesCS7D01G400100 chr7A 94.274 1502 64 13 656 2146 591648537 591650027 0.000000e+00 2278
7 TraesCS7D01G400100 chr7A 90.819 403 32 3 991 1392 59017650 59018048 4.160000e-148 534
8 TraesCS7D01G400100 chr7A 80.640 656 61 28 2149 2773 591650075 591650695 5.570000e-122 448
9 TraesCS7D01G400100 chr7A 90.769 325 27 2 3 326 591631531 591631853 5.610000e-117 431
10 TraesCS7D01G400100 chr7A 89.619 289 18 8 323 608 591648263 591648542 9.660000e-95 357
11 TraesCS7D01G400100 chr7A 88.462 208 17 5 2633 2834 591711869 591712075 7.850000e-61 244
12 TraesCS7D01G400100 chr7A 82.031 256 28 11 1681 1923 59018291 59018541 4.790000e-48 202
13 TraesCS7D01G400100 chr4A 81.469 572 59 19 991 1561 671018386 671018911 2.610000e-115 425
14 TraesCS7D01G400100 chr4A 83.408 223 29 4 1708 1923 671027061 671027282 1.720000e-47 200
15 TraesCS7D01G400100 chr2D 82.301 226 34 3 2281 2504 484378270 484378491 1.040000e-44 191
16 TraesCS7D01G400100 chr1B 81.905 210 33 5 2281 2486 654637283 654637491 3.760000e-39 172
17 TraesCS7D01G400100 chr2A 80.258 233 28 10 2280 2504 628676113 628676335 2.920000e-35 159
18 TraesCS7D01G400100 chr2B 85.714 133 17 2 2287 2417 21751761 21751893 3.810000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G400100 chr7D 517113805 517116640 2835 False 5238.000000 5238 100.000000 1 2836 1 chr7D.!!$F2 2835
1 TraesCS7D01G400100 chr7D 55221733 55222499 766 False 588.000000 588 80.911000 991 1789 1 chr7D.!!$F1 798
2 TraesCS7D01G400100 chr7D 54989674 54990458 784 True 562.000000 562 80.268000 994 1789 1 chr7D.!!$R1 795
3 TraesCS7D01G400100 chr7B 549602453 549604731 2278 False 1457.000000 2457 89.082000 264 2545 2 chr7B.!!$F2 2281
4 TraesCS7D01G400100 chr7A 591648263 591650695 2432 False 1027.666667 2278 88.177667 323 2773 3 chr7A.!!$F4 2450
5 TraesCS7D01G400100 chr7A 59017650 59018541 891 False 368.000000 534 86.425000 991 1923 2 chr7A.!!$F3 932
6 TraesCS7D01G400100 chr4A 671018386 671018911 525 False 425.000000 425 81.469000 991 1561 1 chr4A.!!$F1 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
262 263 0.031515 TAGCCGGAGATGAGGGGAAA 60.032 55.0 5.05 0.0 0.0 3.13 F
624 656 0.047802 AATTGGATGGGGAGAGGGGA 59.952 55.0 0.00 0.0 0.0 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1548 1610 0.391228 TGACGTTTACCTGCAGCAGA 59.609 50.0 24.90 1.09 32.44 4.26 R
2442 2615 0.038166 TGGCAGAAAACCTAGGCCTG 59.962 55.0 17.99 12.10 44.85 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.553418 AAAACAATGAAAAGAAAAATGAAACCG 57.447 25.926 0.00 0.00 0.00 4.44
36 37 8.485976 AACAATGAAAAGAAAAATGAAACCGA 57.514 26.923 0.00 0.00 0.00 4.69
37 38 8.661352 ACAATGAAAAGAAAAATGAAACCGAT 57.339 26.923 0.00 0.00 0.00 4.18
38 39 9.757227 ACAATGAAAAGAAAAATGAAACCGATA 57.243 25.926 0.00 0.00 0.00 2.92
65 66 2.103537 AAATGGAAAGGACCCGTACG 57.896 50.000 8.69 8.69 0.00 3.67
66 67 0.978907 AATGGAAAGGACCCGTACGT 59.021 50.000 15.21 0.00 0.00 3.57
67 68 1.851304 ATGGAAAGGACCCGTACGTA 58.149 50.000 15.21 0.00 0.00 3.57
68 69 1.176527 TGGAAAGGACCCGTACGTAG 58.823 55.000 15.21 7.77 0.00 3.51
69 70 1.271871 TGGAAAGGACCCGTACGTAGA 60.272 52.381 15.21 0.00 0.00 2.59
70 71 1.818674 GGAAAGGACCCGTACGTAGAA 59.181 52.381 15.21 0.00 0.00 2.10
71 72 2.416027 GGAAAGGACCCGTACGTAGAAC 60.416 54.545 15.21 0.36 0.00 3.01
73 74 0.036388 AGGACCCGTACGTAGAACGA 60.036 55.000 15.21 0.00 46.05 3.85
74 75 0.802494 GGACCCGTACGTAGAACGAA 59.198 55.000 15.21 0.00 46.05 3.85
75 76 1.465856 GGACCCGTACGTAGAACGAAC 60.466 57.143 15.21 2.35 46.05 3.95
76 77 0.165944 ACCCGTACGTAGAACGAACG 59.834 55.000 15.21 4.42 46.05 3.95
77 78 0.442310 CCCGTACGTAGAACGAACGA 59.558 55.000 15.21 0.00 46.05 3.85
78 79 1.527793 CCCGTACGTAGAACGAACGAG 60.528 57.143 15.21 0.00 46.05 4.18
79 80 1.527793 CCGTACGTAGAACGAACGAGG 60.528 57.143 15.21 0.00 46.05 4.63
80 81 1.527793 CGTACGTAGAACGAACGAGGG 60.528 57.143 7.22 0.00 46.05 4.30
81 82 0.447801 TACGTAGAACGAACGAGGGC 59.552 55.000 6.44 0.00 46.05 5.19
82 83 1.866496 CGTAGAACGAACGAGGGCG 60.866 63.158 0.14 0.00 46.05 6.13
83 84 1.515736 GTAGAACGAACGAGGGCGG 60.516 63.158 0.14 0.00 43.17 6.13
84 85 1.973281 TAGAACGAACGAGGGCGGT 60.973 57.895 0.14 0.00 42.43 5.68
105 106 2.513897 GCTAACGAGCCGGCCAAT 60.514 61.111 26.15 3.93 43.49 3.16
106 107 1.227438 GCTAACGAGCCGGCCAATA 60.227 57.895 26.15 10.73 43.49 1.90
107 108 0.602905 GCTAACGAGCCGGCCAATAT 60.603 55.000 26.15 2.91 43.49 1.28
108 109 1.148310 CTAACGAGCCGGCCAATATG 58.852 55.000 26.15 9.29 0.00 1.78
109 110 0.882927 TAACGAGCCGGCCAATATGC 60.883 55.000 26.15 2.87 0.00 3.14
110 111 2.591429 CGAGCCGGCCAATATGCA 60.591 61.111 26.15 0.00 0.00 3.96
111 112 2.896801 CGAGCCGGCCAATATGCAC 61.897 63.158 26.15 2.59 0.00 4.57
112 113 2.896801 GAGCCGGCCAATATGCACG 61.897 63.158 26.15 0.00 0.00 5.34
113 114 2.899838 GCCGGCCAATATGCACGA 60.900 61.111 18.11 0.00 0.00 4.35
114 115 2.896801 GCCGGCCAATATGCACGAG 61.897 63.158 18.11 0.00 0.00 4.18
115 116 2.633657 CGGCCAATATGCACGAGC 59.366 61.111 2.24 0.00 42.57 5.03
116 117 2.896801 CGGCCAATATGCACGAGCC 61.897 63.158 2.24 0.00 41.13 4.70
117 118 2.555547 GGCCAATATGCACGAGCCC 61.556 63.158 0.00 0.00 41.13 5.19
118 119 1.526917 GCCAATATGCACGAGCCCT 60.527 57.895 1.39 0.00 41.13 5.19
119 120 1.103398 GCCAATATGCACGAGCCCTT 61.103 55.000 1.39 0.00 41.13 3.95
120 121 1.392589 CCAATATGCACGAGCCCTTT 58.607 50.000 1.39 0.00 41.13 3.11
121 122 2.571212 CCAATATGCACGAGCCCTTTA 58.429 47.619 1.39 0.00 41.13 1.85
122 123 2.549754 CCAATATGCACGAGCCCTTTAG 59.450 50.000 1.39 0.00 41.13 1.85
123 124 2.549754 CAATATGCACGAGCCCTTTAGG 59.450 50.000 1.39 0.00 41.13 2.69
135 136 1.959282 CCCTTTAGGCAAGATGGATGC 59.041 52.381 0.00 0.00 43.08 3.91
136 137 2.423947 CCCTTTAGGCAAGATGGATGCT 60.424 50.000 0.00 0.00 43.34 3.79
137 138 3.181440 CCCTTTAGGCAAGATGGATGCTA 60.181 47.826 0.00 0.00 43.34 3.49
138 139 4.464008 CCTTTAGGCAAGATGGATGCTAA 58.536 43.478 0.00 0.00 43.34 3.09
139 140 4.518211 CCTTTAGGCAAGATGGATGCTAAG 59.482 45.833 0.00 1.38 43.34 2.18
140 141 5.371526 CTTTAGGCAAGATGGATGCTAAGA 58.628 41.667 0.00 0.00 43.34 2.10
141 142 5.573380 TTAGGCAAGATGGATGCTAAGAT 57.427 39.130 0.00 0.00 43.34 2.40
142 143 4.018484 AGGCAAGATGGATGCTAAGATC 57.982 45.455 0.00 0.00 43.34 2.75
143 144 3.393609 AGGCAAGATGGATGCTAAGATCA 59.606 43.478 0.00 0.00 43.34 2.92
144 145 3.752222 GGCAAGATGGATGCTAAGATCAG 59.248 47.826 0.00 0.00 43.34 2.90
145 146 4.387598 GCAAGATGGATGCTAAGATCAGT 58.612 43.478 0.00 0.00 40.64 3.41
146 147 5.512060 GGCAAGATGGATGCTAAGATCAGTA 60.512 44.000 0.00 0.00 43.34 2.74
147 148 5.638657 GCAAGATGGATGCTAAGATCAGTAG 59.361 44.000 0.00 0.00 40.64 2.57
148 149 6.740960 GCAAGATGGATGCTAAGATCAGTAGT 60.741 42.308 0.00 0.00 40.64 2.73
149 150 6.588719 AGATGGATGCTAAGATCAGTAGTC 57.411 41.667 0.00 0.00 0.00 2.59
150 151 6.314120 AGATGGATGCTAAGATCAGTAGTCT 58.686 40.000 0.00 0.00 0.00 3.24
151 152 7.465960 AGATGGATGCTAAGATCAGTAGTCTA 58.534 38.462 0.00 0.00 0.00 2.59
152 153 7.611467 AGATGGATGCTAAGATCAGTAGTCTAG 59.389 40.741 0.00 0.00 0.00 2.43
153 154 6.007076 TGGATGCTAAGATCAGTAGTCTAGG 58.993 44.000 0.00 0.00 0.00 3.02
154 155 5.417580 GGATGCTAAGATCAGTAGTCTAGGG 59.582 48.000 0.00 0.00 0.00 3.53
155 156 4.730966 TGCTAAGATCAGTAGTCTAGGGG 58.269 47.826 0.00 0.00 0.00 4.79
156 157 4.083565 GCTAAGATCAGTAGTCTAGGGGG 58.916 52.174 0.00 0.00 0.00 5.40
157 158 4.448054 GCTAAGATCAGTAGTCTAGGGGGT 60.448 50.000 0.00 0.00 0.00 4.95
158 159 4.628661 AAGATCAGTAGTCTAGGGGGTT 57.371 45.455 0.00 0.00 0.00 4.11
159 160 4.628661 AGATCAGTAGTCTAGGGGGTTT 57.371 45.455 0.00 0.00 0.00 3.27
160 161 4.290942 AGATCAGTAGTCTAGGGGGTTTG 58.709 47.826 0.00 0.00 0.00 2.93
161 162 3.839323 TCAGTAGTCTAGGGGGTTTGA 57.161 47.619 0.00 0.00 0.00 2.69
162 163 3.438183 TCAGTAGTCTAGGGGGTTTGAC 58.562 50.000 0.00 0.00 0.00 3.18
163 164 3.077088 TCAGTAGTCTAGGGGGTTTGACT 59.923 47.826 0.00 0.00 41.81 3.41
164 165 4.293102 TCAGTAGTCTAGGGGGTTTGACTA 59.707 45.833 0.00 0.00 39.94 2.59
165 166 5.043582 TCAGTAGTCTAGGGGGTTTGACTAT 60.044 44.000 0.00 0.00 41.89 2.12
166 167 5.661759 CAGTAGTCTAGGGGGTTTGACTATT 59.338 44.000 0.00 0.00 41.89 1.73
167 168 5.661759 AGTAGTCTAGGGGGTTTGACTATTG 59.338 44.000 0.00 0.00 41.89 1.90
168 169 4.436079 AGTCTAGGGGGTTTGACTATTGT 58.564 43.478 0.00 0.00 37.92 2.71
169 170 4.470304 AGTCTAGGGGGTTTGACTATTGTC 59.530 45.833 0.00 0.00 43.20 3.18
182 183 3.939592 GACTATTGTCAAACACCTAGGGC 59.060 47.826 14.81 0.00 42.48 5.19
183 184 2.215942 ATTGTCAAACACCTAGGGCC 57.784 50.000 14.81 0.00 0.00 5.80
184 185 1.145571 TTGTCAAACACCTAGGGCCT 58.854 50.000 12.58 12.58 0.00 5.19
185 186 0.690762 TGTCAAACACCTAGGGCCTC 59.309 55.000 10.74 0.00 0.00 4.70
186 187 0.690762 GTCAAACACCTAGGGCCTCA 59.309 55.000 10.74 0.00 0.00 3.86
187 188 0.984230 TCAAACACCTAGGGCCTCAG 59.016 55.000 10.74 5.00 0.00 3.35
188 189 0.693049 CAAACACCTAGGGCCTCAGT 59.307 55.000 10.74 5.81 0.00 3.41
189 190 0.693049 AAACACCTAGGGCCTCAGTG 59.307 55.000 26.15 26.15 34.61 3.66
190 191 0.178903 AACACCTAGGGCCTCAGTGA 60.179 55.000 31.59 7.74 32.76 3.41
191 192 0.905337 ACACCTAGGGCCTCAGTGAC 60.905 60.000 31.59 0.00 32.76 3.67
192 193 0.904865 CACCTAGGGCCTCAGTGACA 60.905 60.000 24.53 0.00 0.00 3.58
193 194 0.178903 ACCTAGGGCCTCAGTGACAA 60.179 55.000 10.74 0.00 0.00 3.18
194 195 0.539051 CCTAGGGCCTCAGTGACAAG 59.461 60.000 10.74 0.00 0.00 3.16
195 196 1.561643 CTAGGGCCTCAGTGACAAGA 58.438 55.000 10.74 0.00 0.00 3.02
196 197 1.480137 CTAGGGCCTCAGTGACAAGAG 59.520 57.143 10.74 0.00 0.00 2.85
200 201 3.830679 CCTCAGTGACAAGAGGCTC 57.169 57.895 6.34 6.34 44.37 4.70
201 202 0.108898 CCTCAGTGACAAGAGGCTCG 60.109 60.000 9.22 0.00 44.37 5.03
202 203 0.108898 CTCAGTGACAAGAGGCTCGG 60.109 60.000 9.22 8.26 0.00 4.63
203 204 1.739562 CAGTGACAAGAGGCTCGGC 60.740 63.158 9.22 0.00 0.00 5.54
204 205 2.811317 GTGACAAGAGGCTCGGCG 60.811 66.667 9.22 0.00 0.00 6.46
205 206 4.069232 TGACAAGAGGCTCGGCGG 62.069 66.667 7.21 0.00 0.00 6.13
206 207 4.070552 GACAAGAGGCTCGGCGGT 62.071 66.667 7.21 6.00 0.00 5.68
207 208 2.678934 ACAAGAGGCTCGGCGGTA 60.679 61.111 7.21 0.00 0.00 4.02
208 209 2.105128 CAAGAGGCTCGGCGGTAG 59.895 66.667 7.21 0.00 0.00 3.18
209 210 2.044252 AAGAGGCTCGGCGGTAGA 60.044 61.111 7.21 0.00 0.00 2.59
210 211 1.681327 AAGAGGCTCGGCGGTAGAA 60.681 57.895 7.21 0.00 0.00 2.10
211 212 1.668101 AAGAGGCTCGGCGGTAGAAG 61.668 60.000 7.21 0.00 0.00 2.85
212 213 3.140225 GAGGCTCGGCGGTAGAAGG 62.140 68.421 7.21 0.00 0.00 3.46
213 214 4.893601 GGCTCGGCGGTAGAAGGC 62.894 72.222 7.21 5.03 0.00 4.35
214 215 4.143333 GCTCGGCGGTAGAAGGCA 62.143 66.667 7.21 0.00 0.00 4.75
215 216 2.105128 CTCGGCGGTAGAAGGCAG 59.895 66.667 7.21 0.00 0.00 4.85
216 217 3.432051 CTCGGCGGTAGAAGGCAGG 62.432 68.421 7.21 0.00 0.00 4.85
217 218 4.530857 CGGCGGTAGAAGGCAGGG 62.531 72.222 0.00 0.00 0.00 4.45
218 219 4.858680 GGCGGTAGAAGGCAGGGC 62.859 72.222 0.00 0.00 0.00 5.19
229 230 4.740822 GCAGGGCCACATTCGGGT 62.741 66.667 6.18 0.00 0.00 5.28
230 231 2.751436 CAGGGCCACATTCGGGTG 60.751 66.667 6.18 0.00 38.52 4.61
231 232 3.256960 AGGGCCACATTCGGGTGT 61.257 61.111 6.18 0.00 37.06 4.16
232 233 2.282887 GGGCCACATTCGGGTGTT 60.283 61.111 4.39 0.00 37.06 3.32
233 234 2.340328 GGGCCACATTCGGGTGTTC 61.340 63.158 4.39 0.00 37.06 3.18
234 235 2.686816 GGCCACATTCGGGTGTTCG 61.687 63.158 0.00 0.00 37.06 3.95
235 236 2.867472 CCACATTCGGGTGTTCGC 59.133 61.111 0.00 0.00 37.06 4.70
239 240 1.813753 CATTCGGGTGTTCGCGGAT 60.814 57.895 6.13 0.00 46.64 4.18
240 241 1.813753 ATTCGGGTGTTCGCGGATG 60.814 57.895 6.13 0.00 44.56 3.51
241 242 2.233605 ATTCGGGTGTTCGCGGATGA 62.234 55.000 6.13 0.00 44.56 2.92
242 243 2.885644 CGGGTGTTCGCGGATGAG 60.886 66.667 6.13 0.00 44.34 2.90
243 244 2.264794 GGGTGTTCGCGGATGAGT 59.735 61.111 6.13 0.00 0.00 3.41
244 245 1.514087 GGGTGTTCGCGGATGAGTA 59.486 57.895 6.13 0.00 0.00 2.59
245 246 0.527817 GGGTGTTCGCGGATGAGTAG 60.528 60.000 6.13 0.00 0.00 2.57
246 247 1.146358 GGTGTTCGCGGATGAGTAGC 61.146 60.000 6.13 0.00 0.00 3.58
247 248 1.141019 TGTTCGCGGATGAGTAGCC 59.859 57.895 6.13 0.00 0.00 3.93
255 256 1.621992 GGATGAGTAGCCGGAGATGA 58.378 55.000 5.05 0.00 0.00 2.92
256 257 1.543802 GGATGAGTAGCCGGAGATGAG 59.456 57.143 5.05 0.00 0.00 2.90
257 258 1.543802 GATGAGTAGCCGGAGATGAGG 59.456 57.143 5.05 0.00 0.00 3.86
258 259 0.468214 TGAGTAGCCGGAGATGAGGG 60.468 60.000 5.05 0.00 0.00 4.30
259 260 1.152440 AGTAGCCGGAGATGAGGGG 60.152 63.158 5.05 0.00 0.00 4.79
260 261 1.152525 GTAGCCGGAGATGAGGGGA 60.153 63.158 5.05 0.00 0.00 4.81
261 262 0.759436 GTAGCCGGAGATGAGGGGAA 60.759 60.000 5.05 0.00 0.00 3.97
262 263 0.031515 TAGCCGGAGATGAGGGGAAA 60.032 55.000 5.05 0.00 0.00 3.13
267 268 1.689575 CGGAGATGAGGGGAAAGGAGA 60.690 57.143 0.00 0.00 0.00 3.71
275 276 2.846827 GAGGGGAAAGGAGAAGATTGGA 59.153 50.000 0.00 0.00 0.00 3.53
279 280 2.010497 GAAAGGAGAAGATTGGACGCC 58.990 52.381 0.00 0.00 0.00 5.68
292 293 1.211709 GACGCCAAAAATGGGTCCG 59.788 57.895 0.00 0.00 0.00 4.79
438 444 7.843490 TCCTCTAAATCGAAAGGTTGTATTG 57.157 36.000 0.00 0.00 32.51 1.90
479 486 5.642063 TCACTTTTTAGAAACTAGCGATGGG 59.358 40.000 0.00 0.00 0.00 4.00
491 498 1.983224 CGATGGGGGTGCTATAGGG 59.017 63.158 1.04 0.00 0.00 3.53
608 640 4.789012 AGAATGACCGCACAAATGAATT 57.211 36.364 0.00 0.00 0.00 2.17
609 641 4.487948 AGAATGACCGCACAAATGAATTG 58.512 39.130 0.00 0.00 44.95 2.32
611 643 2.234143 TGACCGCACAAATGAATTGGA 58.766 42.857 0.00 0.00 43.66 3.53
612 644 2.824936 TGACCGCACAAATGAATTGGAT 59.175 40.909 0.00 0.00 43.66 3.41
613 645 3.181397 GACCGCACAAATGAATTGGATG 58.819 45.455 0.00 0.00 43.66 3.51
614 646 2.094078 ACCGCACAAATGAATTGGATGG 60.094 45.455 0.00 0.00 43.66 3.51
615 647 2.542597 CGCACAAATGAATTGGATGGG 58.457 47.619 0.00 0.00 43.66 4.00
616 648 2.739287 CGCACAAATGAATTGGATGGGG 60.739 50.000 0.00 0.00 43.66 4.96
617 649 2.500910 GCACAAATGAATTGGATGGGGA 59.499 45.455 0.00 0.00 43.66 4.81
618 650 3.431207 GCACAAATGAATTGGATGGGGAG 60.431 47.826 0.00 0.00 43.66 4.30
619 651 4.025360 CACAAATGAATTGGATGGGGAGA 58.975 43.478 0.00 0.00 43.66 3.71
620 652 4.098960 CACAAATGAATTGGATGGGGAGAG 59.901 45.833 0.00 0.00 43.66 3.20
621 653 3.607490 AATGAATTGGATGGGGAGAGG 57.393 47.619 0.00 0.00 0.00 3.69
622 654 1.225373 TGAATTGGATGGGGAGAGGG 58.775 55.000 0.00 0.00 0.00 4.30
623 655 0.480252 GAATTGGATGGGGAGAGGGG 59.520 60.000 0.00 0.00 0.00 4.79
624 656 0.047802 AATTGGATGGGGAGAGGGGA 59.952 55.000 0.00 0.00 0.00 4.81
625 657 0.402566 ATTGGATGGGGAGAGGGGAG 60.403 60.000 0.00 0.00 0.00 4.30
626 658 2.122189 GGATGGGGAGAGGGGAGG 60.122 72.222 0.00 0.00 0.00 4.30
627 659 2.122189 GATGGGGAGAGGGGAGGG 60.122 72.222 0.00 0.00 0.00 4.30
628 660 4.523282 ATGGGGAGAGGGGAGGGC 62.523 72.222 0.00 0.00 0.00 5.19
828 860 5.465390 GCAGTTCGGCATATACAGTCAATAA 59.535 40.000 0.00 0.00 0.00 1.40
829 861 6.147821 GCAGTTCGGCATATACAGTCAATAAT 59.852 38.462 0.00 0.00 0.00 1.28
830 862 7.330946 GCAGTTCGGCATATACAGTCAATAATA 59.669 37.037 0.00 0.00 0.00 0.98
875 912 4.499183 ACGCTTCATGAGTCCTCTAAAAG 58.501 43.478 0.00 0.00 0.00 2.27
890 927 5.000012 TCTAAAAGGAAGTCGAGCATCTC 58.000 43.478 0.00 0.00 0.00 2.75
929 968 7.520614 CGCTCACTTTTATCAGAAAAGGTTCTT 60.521 37.037 9.29 0.00 41.55 2.52
934 973 1.892209 TCAGAAAAGGTTCTTCGCCC 58.108 50.000 0.00 0.00 41.55 6.13
1016 1058 0.549902 TCCATGGAGGAGGCCAAGAA 60.550 55.000 11.44 0.00 43.07 2.52
1019 1061 1.283029 CATGGAGGAGGCCAAGAAGAA 59.717 52.381 5.01 0.00 42.16 2.52
1379 1427 1.918293 AGTTCCTCGGCCATGGACA 60.918 57.895 20.22 3.77 31.24 4.02
1402 1454 1.811965 TCGAGGTAACGTCCGATTTGA 59.188 47.619 0.00 0.00 46.39 2.69
1451 1513 3.768633 AGGCGACCTGACATCAATC 57.231 52.632 0.00 0.00 29.57 2.67
1452 1514 1.198713 AGGCGACCTGACATCAATCT 58.801 50.000 0.00 0.00 29.57 2.40
1512 1574 2.358737 GGGCCAACGGTGAGTGAG 60.359 66.667 0.00 0.00 0.00 3.51
1548 1610 2.158505 CCTGATGGAGCCATTCCTCATT 60.159 50.000 3.11 0.00 46.92 2.57
1674 1757 5.748402 AGAGATTGAATGGACATGCAGTTA 58.252 37.500 0.00 0.00 0.00 2.24
1678 1761 7.934457 AGATTGAATGGACATGCAGTTATTAC 58.066 34.615 0.00 0.00 0.00 1.89
1893 1990 2.504367 AGTGTGTGTGCCTACCATTTC 58.496 47.619 0.00 0.00 0.00 2.17
1962 2059 3.192001 AGCCGAACTTTCTGTACACGATA 59.808 43.478 0.00 0.00 0.00 2.92
1963 2060 4.110482 GCCGAACTTTCTGTACACGATAT 58.890 43.478 0.00 0.00 0.00 1.63
1993 2090 3.307242 CGTTATTGAAGCTTCTTCTCCCG 59.693 47.826 26.09 16.57 0.00 5.14
2071 2168 4.679197 CGCTGAATACTCTGCTAGACATTC 59.321 45.833 1.59 0.00 42.66 2.67
2072 2169 5.595885 GCTGAATACTCTGCTAGACATTCA 58.404 41.667 0.00 14.23 41.85 2.57
2078 2175 8.659925 AATACTCTGCTAGACATTCAATCAAG 57.340 34.615 0.00 0.00 0.00 3.02
2085 2182 3.005554 AGACATTCAATCAAGCACCTCG 58.994 45.455 0.00 0.00 0.00 4.63
2148 2245 4.500205 CCTTCTCTGAATGCTCTGCTAGAG 60.500 50.000 0.00 8.34 45.04 2.43
2312 2483 3.260632 GGCCTAAATTTTGAGCCCAAAGA 59.739 43.478 15.87 0.00 42.55 2.52
2314 2485 4.485163 CCTAAATTTTGAGCCCAAAGACG 58.515 43.478 0.00 0.00 42.55 4.18
2540 2730 3.620488 ACCTGAAGCAAACTGAAGAACA 58.380 40.909 0.00 0.00 0.00 3.18
2586 2776 3.637229 GAGACAATTCCGACAGATCCCTA 59.363 47.826 0.00 0.00 0.00 3.53
2588 2778 4.100189 AGACAATTCCGACAGATCCCTAAG 59.900 45.833 0.00 0.00 0.00 2.18
2598 2788 5.244178 CGACAGATCCCTAAGTAAGGCTATT 59.756 44.000 0.00 0.00 45.03 1.73
2603 2793 4.549668 TCCCTAAGTAAGGCTATTCGGAA 58.450 43.478 0.00 0.00 45.03 4.30
2604 2794 4.964262 TCCCTAAGTAAGGCTATTCGGAAA 59.036 41.667 0.00 0.00 45.03 3.13
2609 2799 8.365647 CCTAAGTAAGGCTATTCGGAAAAGATA 58.634 37.037 0.00 0.00 38.97 1.98
2616 2806 6.843208 GGCTATTCGGAAAAGATAAATAGGC 58.157 40.000 10.06 10.06 43.56 3.93
2652 2842 3.224269 AGGCGACTCCTTACCTAGATTC 58.776 50.000 0.00 0.00 44.75 2.52
2653 2843 2.030981 GGCGACTCCTTACCTAGATTCG 60.031 54.545 0.00 0.00 0.00 3.34
2666 2856 3.254657 CCTAGATTCGGGCTCTTGACTAG 59.745 52.174 0.00 0.00 0.00 2.57
2715 2905 6.961359 CAACCGAGAGATTGTATGTTGTAA 57.039 37.500 0.00 0.00 26.97 2.41
2773 2963 2.099427 GCCCTAGAGTTACAAGAGTCCG 59.901 54.545 0.00 0.00 0.00 4.79
2774 2964 2.099427 CCCTAGAGTTACAAGAGTCCGC 59.901 54.545 0.00 0.00 0.00 5.54
2775 2965 3.018149 CCTAGAGTTACAAGAGTCCGCT 58.982 50.000 0.00 0.00 0.00 5.52
2776 2966 4.197750 CCTAGAGTTACAAGAGTCCGCTA 58.802 47.826 0.00 0.00 0.00 4.26
2777 2967 4.822896 CCTAGAGTTACAAGAGTCCGCTAT 59.177 45.833 0.00 0.00 0.00 2.97
2778 2968 4.640789 AGAGTTACAAGAGTCCGCTATG 57.359 45.455 0.00 0.00 0.00 2.23
2779 2969 4.017808 AGAGTTACAAGAGTCCGCTATGT 58.982 43.478 0.00 0.00 0.00 2.29
2780 2970 4.096682 AGAGTTACAAGAGTCCGCTATGTC 59.903 45.833 0.00 0.00 0.00 3.06
2781 2971 3.106672 GTTACAAGAGTCCGCTATGTCG 58.893 50.000 0.00 0.00 0.00 4.35
2789 2979 3.733236 CCGCTATGTCGGTGAAAGA 57.267 52.632 0.00 0.00 44.18 2.52
2790 2980 1.560923 CCGCTATGTCGGTGAAAGAG 58.439 55.000 0.00 0.00 44.18 2.85
2791 2981 1.134367 CCGCTATGTCGGTGAAAGAGA 59.866 52.381 0.00 0.00 44.18 3.10
2792 2982 2.455032 CGCTATGTCGGTGAAAGAGAG 58.545 52.381 0.00 0.00 0.00 3.20
2793 2983 2.159366 CGCTATGTCGGTGAAAGAGAGT 60.159 50.000 0.00 0.00 0.00 3.24
2794 2984 3.440228 GCTATGTCGGTGAAAGAGAGTC 58.560 50.000 0.00 0.00 0.00 3.36
2795 2985 3.735514 GCTATGTCGGTGAAAGAGAGTCC 60.736 52.174 0.00 0.00 0.00 3.85
2796 2986 1.996798 TGTCGGTGAAAGAGAGTCCT 58.003 50.000 0.00 0.00 0.00 3.85
2797 2987 1.887198 TGTCGGTGAAAGAGAGTCCTC 59.113 52.381 0.00 0.00 39.72 3.71
2798 2988 1.202817 GTCGGTGAAAGAGAGTCCTCC 59.797 57.143 0.00 0.00 40.30 4.30
2799 2989 0.171455 CGGTGAAAGAGAGTCCTCCG 59.829 60.000 0.00 0.00 40.30 4.63
2800 2990 0.108567 GGTGAAAGAGAGTCCTCCGC 60.109 60.000 0.00 0.00 40.30 5.54
2801 2991 0.456995 GTGAAAGAGAGTCCTCCGCG 60.457 60.000 0.00 0.00 40.30 6.46
2802 2992 0.608308 TGAAAGAGAGTCCTCCGCGA 60.608 55.000 8.23 0.00 40.30 5.87
2803 2993 0.526662 GAAAGAGAGTCCTCCGCGAA 59.473 55.000 8.23 0.00 40.30 4.70
2804 2994 0.244178 AAAGAGAGTCCTCCGCGAAC 59.756 55.000 8.23 0.00 40.30 3.95
2805 2995 1.596895 AAGAGAGTCCTCCGCGAACC 61.597 60.000 8.23 0.00 40.30 3.62
2806 2996 2.035940 AGAGTCCTCCGCGAACCT 59.964 61.111 8.23 0.00 0.00 3.50
2807 2997 2.182030 GAGTCCTCCGCGAACCTG 59.818 66.667 8.23 0.00 0.00 4.00
2808 2998 2.282958 AGTCCTCCGCGAACCTGA 60.283 61.111 8.23 0.00 0.00 3.86
2809 2999 2.126031 GTCCTCCGCGAACCTGAC 60.126 66.667 8.23 2.90 0.00 3.51
2810 3000 2.282958 TCCTCCGCGAACCTGACT 60.283 61.111 8.23 0.00 0.00 3.41
2811 3001 1.906824 TCCTCCGCGAACCTGACTT 60.907 57.895 8.23 0.00 0.00 3.01
2812 3002 1.446272 CCTCCGCGAACCTGACTTC 60.446 63.158 8.23 0.00 0.00 3.01
2813 3003 1.446272 CTCCGCGAACCTGACTTCC 60.446 63.158 8.23 0.00 0.00 3.46
2814 3004 1.878656 CTCCGCGAACCTGACTTCCT 61.879 60.000 8.23 0.00 0.00 3.36
2815 3005 1.004918 CCGCGAACCTGACTTCCTT 60.005 57.895 8.23 0.00 0.00 3.36
2816 3006 1.291877 CCGCGAACCTGACTTCCTTG 61.292 60.000 8.23 0.00 0.00 3.61
2817 3007 0.600255 CGCGAACCTGACTTCCTTGT 60.600 55.000 0.00 0.00 0.00 3.16
2818 3008 1.594331 GCGAACCTGACTTCCTTGTT 58.406 50.000 0.00 0.00 0.00 2.83
2819 3009 1.947456 GCGAACCTGACTTCCTTGTTT 59.053 47.619 0.00 0.00 0.00 2.83
2820 3010 2.357952 GCGAACCTGACTTCCTTGTTTT 59.642 45.455 0.00 0.00 0.00 2.43
2821 3011 3.792124 GCGAACCTGACTTCCTTGTTTTG 60.792 47.826 0.00 0.00 0.00 2.44
2822 3012 3.625764 CGAACCTGACTTCCTTGTTTTGA 59.374 43.478 0.00 0.00 0.00 2.69
2823 3013 4.095782 CGAACCTGACTTCCTTGTTTTGAA 59.904 41.667 0.00 0.00 0.00 2.69
2824 3014 5.221048 CGAACCTGACTTCCTTGTTTTGAAT 60.221 40.000 0.00 0.00 0.00 2.57
2825 3015 5.520376 ACCTGACTTCCTTGTTTTGAATG 57.480 39.130 0.00 0.00 0.00 2.67
2826 3016 4.202151 ACCTGACTTCCTTGTTTTGAATGC 60.202 41.667 0.00 0.00 0.00 3.56
2827 3017 4.202141 CCTGACTTCCTTGTTTTGAATGCA 60.202 41.667 0.00 0.00 0.00 3.96
2828 3018 5.336150 TGACTTCCTTGTTTTGAATGCAA 57.664 34.783 0.00 0.00 0.00 4.08
2829 3019 5.108517 TGACTTCCTTGTTTTGAATGCAAC 58.891 37.500 0.00 0.00 32.79 4.17
2830 3020 4.111916 ACTTCCTTGTTTTGAATGCAACG 58.888 39.130 0.00 0.00 32.79 4.10
2831 3021 2.468831 TCCTTGTTTTGAATGCAACGC 58.531 42.857 0.00 0.00 32.79 4.84
2832 3022 2.100584 TCCTTGTTTTGAATGCAACGCT 59.899 40.909 0.00 0.00 32.79 5.07
2833 3023 2.865551 CCTTGTTTTGAATGCAACGCTT 59.134 40.909 0.00 0.00 32.79 4.68
2834 3024 3.309410 CCTTGTTTTGAATGCAACGCTTT 59.691 39.130 0.00 0.00 32.79 3.51
2835 3025 4.201802 CCTTGTTTTGAATGCAACGCTTTT 60.202 37.500 0.00 0.00 32.79 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.553418 CGGTTTCATTTTTCTTTTCATTGTTTT 57.447 25.926 0.00 0.00 0.00 2.43
10 11 8.940952 TCGGTTTCATTTTTCTTTTCATTGTTT 58.059 25.926 0.00 0.00 0.00 2.83
11 12 8.485976 TCGGTTTCATTTTTCTTTTCATTGTT 57.514 26.923 0.00 0.00 0.00 2.83
12 13 8.661352 ATCGGTTTCATTTTTCTTTTCATTGT 57.339 26.923 0.00 0.00 0.00 2.71
44 45 2.815503 CGTACGGGTCCTTTCCATTTTT 59.184 45.455 7.57 0.00 0.00 1.94
45 46 2.224597 ACGTACGGGTCCTTTCCATTTT 60.225 45.455 21.06 0.00 0.00 1.82
46 47 1.348696 ACGTACGGGTCCTTTCCATTT 59.651 47.619 21.06 0.00 0.00 2.32
47 48 0.978907 ACGTACGGGTCCTTTCCATT 59.021 50.000 21.06 0.00 0.00 3.16
48 49 1.753073 CTACGTACGGGTCCTTTCCAT 59.247 52.381 21.06 0.00 0.00 3.41
49 50 1.176527 CTACGTACGGGTCCTTTCCA 58.823 55.000 21.06 0.00 0.00 3.53
50 51 1.463674 TCTACGTACGGGTCCTTTCC 58.536 55.000 21.06 0.00 0.00 3.13
51 52 2.729156 CGTTCTACGTACGGGTCCTTTC 60.729 54.545 21.06 1.53 36.74 2.62
52 53 1.200020 CGTTCTACGTACGGGTCCTTT 59.800 52.381 21.06 0.00 36.74 3.11
53 54 0.804989 CGTTCTACGTACGGGTCCTT 59.195 55.000 21.06 0.00 36.74 3.36
54 55 0.036388 TCGTTCTACGTACGGGTCCT 60.036 55.000 21.06 0.00 43.14 3.85
55 56 0.802494 TTCGTTCTACGTACGGGTCC 59.198 55.000 21.06 2.30 43.14 4.46
56 57 1.883476 GTTCGTTCTACGTACGGGTC 58.117 55.000 21.06 8.71 43.14 4.46
61 62 1.791914 GCCCTCGTTCGTTCTACGTAC 60.792 57.143 0.00 0.00 43.14 3.67
62 63 0.447801 GCCCTCGTTCGTTCTACGTA 59.552 55.000 0.00 0.00 43.14 3.57
63 64 1.211190 GCCCTCGTTCGTTCTACGT 59.789 57.895 0.00 0.00 43.14 3.57
64 65 1.866496 CGCCCTCGTTCGTTCTACG 60.866 63.158 0.00 0.00 44.19 3.51
65 66 1.515736 CCGCCCTCGTTCGTTCTAC 60.516 63.158 0.00 0.00 0.00 2.59
66 67 1.926511 GACCGCCCTCGTTCGTTCTA 61.927 60.000 0.00 0.00 0.00 2.10
67 68 3.278592 GACCGCCCTCGTTCGTTCT 62.279 63.158 0.00 0.00 0.00 3.01
68 69 2.808321 GACCGCCCTCGTTCGTTC 60.808 66.667 0.00 0.00 0.00 3.95
69 70 4.712425 CGACCGCCCTCGTTCGTT 62.712 66.667 0.00 0.00 43.93 3.85
89 90 1.148310 CATATTGGCCGGCTCGTTAG 58.852 55.000 28.56 9.24 0.00 2.34
90 91 0.882927 GCATATTGGCCGGCTCGTTA 60.883 55.000 28.56 13.45 0.00 3.18
91 92 2.186826 GCATATTGGCCGGCTCGTT 61.187 57.895 28.56 11.56 0.00 3.85
92 93 2.591715 GCATATTGGCCGGCTCGT 60.592 61.111 28.56 14.58 0.00 4.18
93 94 2.591429 TGCATATTGGCCGGCTCG 60.591 61.111 28.56 9.54 0.00 5.03
94 95 2.896801 CGTGCATATTGGCCGGCTC 61.897 63.158 28.56 17.27 0.00 4.70
95 96 2.901840 CGTGCATATTGGCCGGCT 60.902 61.111 28.56 9.55 0.00 5.52
96 97 2.896801 CTCGTGCATATTGGCCGGC 61.897 63.158 21.18 21.18 0.00 6.13
97 98 2.896801 GCTCGTGCATATTGGCCGG 61.897 63.158 4.26 0.00 39.41 6.13
98 99 2.633657 GCTCGTGCATATTGGCCG 59.366 61.111 4.26 0.00 39.41 6.13
99 100 2.555547 GGGCTCGTGCATATTGGCC 61.556 63.158 12.07 0.00 41.91 5.36
100 101 1.103398 AAGGGCTCGTGCATATTGGC 61.103 55.000 12.07 0.00 41.91 4.52
101 102 1.392589 AAAGGGCTCGTGCATATTGG 58.607 50.000 12.07 0.00 41.91 3.16
102 103 2.549754 CCTAAAGGGCTCGTGCATATTG 59.450 50.000 12.07 0.00 41.91 1.90
103 104 2.851195 CCTAAAGGGCTCGTGCATATT 58.149 47.619 12.07 5.13 41.91 1.28
104 105 2.550830 CCTAAAGGGCTCGTGCATAT 57.449 50.000 12.07 0.00 41.91 1.78
106 107 4.963878 CCTAAAGGGCTCGTGCAT 57.036 55.556 12.07 0.00 41.91 3.96
115 116 1.959282 GCATCCATCTTGCCTAAAGGG 59.041 52.381 0.00 0.00 36.46 3.95
116 117 2.941480 AGCATCCATCTTGCCTAAAGG 58.059 47.619 0.00 0.00 41.06 3.11
117 118 5.371526 TCTTAGCATCCATCTTGCCTAAAG 58.628 41.667 0.00 0.00 41.06 1.85
118 119 5.372343 TCTTAGCATCCATCTTGCCTAAA 57.628 39.130 0.00 0.00 41.06 1.85
119 120 5.072193 TGATCTTAGCATCCATCTTGCCTAA 59.928 40.000 0.00 0.00 41.06 2.69
120 121 4.594491 TGATCTTAGCATCCATCTTGCCTA 59.406 41.667 0.00 0.00 41.06 3.93
121 122 3.393609 TGATCTTAGCATCCATCTTGCCT 59.606 43.478 0.00 0.00 41.06 4.75
122 123 3.748083 TGATCTTAGCATCCATCTTGCC 58.252 45.455 0.00 0.00 41.06 4.52
123 124 4.387598 ACTGATCTTAGCATCCATCTTGC 58.612 43.478 0.00 0.00 40.45 4.01
124 125 6.757237 ACTACTGATCTTAGCATCCATCTTG 58.243 40.000 0.00 0.00 0.00 3.02
125 126 6.782000 AGACTACTGATCTTAGCATCCATCTT 59.218 38.462 0.00 0.00 0.00 2.40
126 127 6.314120 AGACTACTGATCTTAGCATCCATCT 58.686 40.000 0.00 0.00 0.00 2.90
127 128 6.588719 AGACTACTGATCTTAGCATCCATC 57.411 41.667 0.00 0.00 0.00 3.51
128 129 6.663093 CCTAGACTACTGATCTTAGCATCCAT 59.337 42.308 0.00 0.00 0.00 3.41
129 130 6.007076 CCTAGACTACTGATCTTAGCATCCA 58.993 44.000 0.00 0.00 0.00 3.41
130 131 5.417580 CCCTAGACTACTGATCTTAGCATCC 59.582 48.000 0.00 0.00 0.00 3.51
131 132 5.417580 CCCCTAGACTACTGATCTTAGCATC 59.582 48.000 0.00 0.00 0.00 3.91
132 133 5.329399 CCCCTAGACTACTGATCTTAGCAT 58.671 45.833 0.00 0.00 0.00 3.79
133 134 4.447908 CCCCCTAGACTACTGATCTTAGCA 60.448 50.000 0.00 0.00 0.00 3.49
134 135 4.083565 CCCCCTAGACTACTGATCTTAGC 58.916 52.174 0.00 0.00 0.00 3.09
135 136 5.327737 ACCCCCTAGACTACTGATCTTAG 57.672 47.826 0.00 0.00 0.00 2.18
136 137 5.745988 AACCCCCTAGACTACTGATCTTA 57.254 43.478 0.00 0.00 0.00 2.10
137 138 4.628661 AACCCCCTAGACTACTGATCTT 57.371 45.455 0.00 0.00 0.00 2.40
138 139 4.016479 TCAAACCCCCTAGACTACTGATCT 60.016 45.833 0.00 0.00 0.00 2.75
139 140 4.099727 GTCAAACCCCCTAGACTACTGATC 59.900 50.000 0.00 0.00 0.00 2.92
140 141 4.031611 GTCAAACCCCCTAGACTACTGAT 58.968 47.826 0.00 0.00 0.00 2.90
141 142 3.077088 AGTCAAACCCCCTAGACTACTGA 59.923 47.826 0.00 0.00 39.40 3.41
142 143 3.442076 AGTCAAACCCCCTAGACTACTG 58.558 50.000 0.00 0.00 39.40 2.74
143 144 3.848978 AGTCAAACCCCCTAGACTACT 57.151 47.619 0.00 0.00 39.40 2.57
144 145 5.424573 ACAATAGTCAAACCCCCTAGACTAC 59.575 44.000 0.00 0.00 43.84 2.73
145 146 5.596763 ACAATAGTCAAACCCCCTAGACTA 58.403 41.667 0.00 0.00 44.76 2.59
146 147 4.436079 ACAATAGTCAAACCCCCTAGACT 58.564 43.478 0.00 0.00 43.25 3.24
147 148 4.767478 GACAATAGTCAAACCCCCTAGAC 58.233 47.826 0.00 0.00 44.34 2.59
160 161 3.939592 GCCCTAGGTGTTTGACAATAGTC 59.060 47.826 8.29 0.00 45.19 2.59
161 162 3.308188 GGCCCTAGGTGTTTGACAATAGT 60.308 47.826 8.29 0.00 0.00 2.12
162 163 3.054361 AGGCCCTAGGTGTTTGACAATAG 60.054 47.826 8.29 0.00 0.00 1.73
163 164 2.916934 AGGCCCTAGGTGTTTGACAATA 59.083 45.455 8.29 0.00 0.00 1.90
164 165 1.710809 AGGCCCTAGGTGTTTGACAAT 59.289 47.619 8.29 0.00 0.00 2.71
165 166 1.073284 GAGGCCCTAGGTGTTTGACAA 59.927 52.381 8.29 0.00 0.00 3.18
166 167 0.690762 GAGGCCCTAGGTGTTTGACA 59.309 55.000 8.29 0.00 0.00 3.58
167 168 0.690762 TGAGGCCCTAGGTGTTTGAC 59.309 55.000 8.29 0.00 0.00 3.18
168 169 0.984230 CTGAGGCCCTAGGTGTTTGA 59.016 55.000 8.29 0.00 0.00 2.69
169 170 0.693049 ACTGAGGCCCTAGGTGTTTG 59.307 55.000 8.29 0.00 0.00 2.93
170 171 0.693049 CACTGAGGCCCTAGGTGTTT 59.307 55.000 8.29 0.00 0.00 2.83
171 172 0.178903 TCACTGAGGCCCTAGGTGTT 60.179 55.000 8.29 0.00 0.00 3.32
172 173 0.905337 GTCACTGAGGCCCTAGGTGT 60.905 60.000 8.29 0.00 0.00 4.16
173 174 0.904865 TGTCACTGAGGCCCTAGGTG 60.905 60.000 8.29 8.71 0.00 4.00
174 175 0.178903 TTGTCACTGAGGCCCTAGGT 60.179 55.000 8.29 0.00 0.00 3.08
175 176 0.539051 CTTGTCACTGAGGCCCTAGG 59.461 60.000 0.06 0.06 0.00 3.02
176 177 1.480137 CTCTTGTCACTGAGGCCCTAG 59.520 57.143 0.00 0.00 0.00 3.02
177 178 1.561643 CTCTTGTCACTGAGGCCCTA 58.438 55.000 0.00 0.00 0.00 3.53
178 179 1.197430 CCTCTTGTCACTGAGGCCCT 61.197 60.000 0.00 0.00 42.62 5.19
179 180 1.298014 CCTCTTGTCACTGAGGCCC 59.702 63.158 0.00 0.00 42.62 5.80
183 184 0.108898 CCGAGCCTCTTGTCACTGAG 60.109 60.000 0.00 0.00 0.00 3.35
184 185 1.967535 CCGAGCCTCTTGTCACTGA 59.032 57.895 0.00 0.00 0.00 3.41
185 186 1.739562 GCCGAGCCTCTTGTCACTG 60.740 63.158 0.00 0.00 0.00 3.66
186 187 2.659610 GCCGAGCCTCTTGTCACT 59.340 61.111 0.00 0.00 0.00 3.41
187 188 2.811317 CGCCGAGCCTCTTGTCAC 60.811 66.667 0.00 0.00 0.00 3.67
188 189 4.069232 CCGCCGAGCCTCTTGTCA 62.069 66.667 0.00 0.00 0.00 3.58
189 190 2.615262 CTACCGCCGAGCCTCTTGTC 62.615 65.000 0.00 0.00 0.00 3.18
190 191 2.678934 TACCGCCGAGCCTCTTGT 60.679 61.111 0.00 0.00 0.00 3.16
191 192 1.945354 TTCTACCGCCGAGCCTCTTG 61.945 60.000 0.00 0.00 0.00 3.02
192 193 1.668101 CTTCTACCGCCGAGCCTCTT 61.668 60.000 0.00 0.00 0.00 2.85
193 194 2.044252 TTCTACCGCCGAGCCTCT 60.044 61.111 0.00 0.00 0.00 3.69
194 195 2.413765 CTTCTACCGCCGAGCCTC 59.586 66.667 0.00 0.00 0.00 4.70
195 196 3.148279 CCTTCTACCGCCGAGCCT 61.148 66.667 0.00 0.00 0.00 4.58
196 197 4.893601 GCCTTCTACCGCCGAGCC 62.894 72.222 0.00 0.00 0.00 4.70
197 198 4.143333 TGCCTTCTACCGCCGAGC 62.143 66.667 0.00 0.00 0.00 5.03
198 199 2.105128 CTGCCTTCTACCGCCGAG 59.895 66.667 0.00 0.00 0.00 4.63
199 200 3.458163 CCTGCCTTCTACCGCCGA 61.458 66.667 0.00 0.00 0.00 5.54
200 201 4.530857 CCCTGCCTTCTACCGCCG 62.531 72.222 0.00 0.00 0.00 6.46
201 202 4.858680 GCCCTGCCTTCTACCGCC 62.859 72.222 0.00 0.00 0.00 6.13
202 203 4.858680 GGCCCTGCCTTCTACCGC 62.859 72.222 0.00 0.00 46.69 5.68
212 213 4.740822 ACCCGAATGTGGCCCTGC 62.741 66.667 0.00 0.00 0.00 4.85
213 214 2.751436 CACCCGAATGTGGCCCTG 60.751 66.667 0.00 0.00 32.50 4.45
214 215 2.764637 GAACACCCGAATGTGGCCCT 62.765 60.000 0.00 0.00 40.62 5.19
215 216 2.282887 AACACCCGAATGTGGCCC 60.283 61.111 0.00 0.00 40.62 5.80
216 217 2.686816 CGAACACCCGAATGTGGCC 61.687 63.158 0.00 0.00 40.62 5.36
217 218 2.867472 CGAACACCCGAATGTGGC 59.133 61.111 5.02 0.00 40.62 5.01
218 219 2.867472 GCGAACACCCGAATGTGG 59.133 61.111 0.00 0.00 40.62 4.17
219 220 2.474266 CGCGAACACCCGAATGTG 59.526 61.111 0.00 0.00 42.05 3.21
220 221 2.515996 ATCCGCGAACACCCGAATGT 62.516 55.000 8.23 0.00 0.00 2.71
221 222 1.813753 ATCCGCGAACACCCGAATG 60.814 57.895 8.23 0.00 0.00 2.67
222 223 1.813753 CATCCGCGAACACCCGAAT 60.814 57.895 8.23 0.00 0.00 3.34
223 224 2.433491 CATCCGCGAACACCCGAA 60.433 61.111 8.23 0.00 0.00 4.30
224 225 3.350909 CTCATCCGCGAACACCCGA 62.351 63.158 8.23 0.00 0.00 5.14
225 226 2.274232 TACTCATCCGCGAACACCCG 62.274 60.000 8.23 0.00 0.00 5.28
226 227 0.527817 CTACTCATCCGCGAACACCC 60.528 60.000 8.23 0.00 0.00 4.61
227 228 1.146358 GCTACTCATCCGCGAACACC 61.146 60.000 8.23 0.00 0.00 4.16
228 229 1.146358 GGCTACTCATCCGCGAACAC 61.146 60.000 8.23 0.00 0.00 3.32
229 230 1.141019 GGCTACTCATCCGCGAACA 59.859 57.895 8.23 0.00 0.00 3.18
230 231 1.944676 CGGCTACTCATCCGCGAAC 60.945 63.158 8.23 0.00 39.14 3.95
231 232 2.411701 CGGCTACTCATCCGCGAA 59.588 61.111 8.23 0.00 39.14 4.70
232 233 3.592814 CCGGCTACTCATCCGCGA 61.593 66.667 8.23 0.00 44.01 5.87
233 234 3.544167 CTCCGGCTACTCATCCGCG 62.544 68.421 0.00 0.00 44.01 6.46
234 235 1.528292 ATCTCCGGCTACTCATCCGC 61.528 60.000 0.00 0.00 44.01 5.54
235 236 0.242286 CATCTCCGGCTACTCATCCG 59.758 60.000 0.00 0.00 44.89 4.18
236 237 1.543802 CTCATCTCCGGCTACTCATCC 59.456 57.143 0.00 0.00 0.00 3.51
237 238 1.543802 CCTCATCTCCGGCTACTCATC 59.456 57.143 0.00 0.00 0.00 2.92
238 239 1.626686 CCTCATCTCCGGCTACTCAT 58.373 55.000 0.00 0.00 0.00 2.90
239 240 0.468214 CCCTCATCTCCGGCTACTCA 60.468 60.000 0.00 0.00 0.00 3.41
240 241 1.182385 CCCCTCATCTCCGGCTACTC 61.182 65.000 0.00 0.00 0.00 2.59
241 242 1.152440 CCCCTCATCTCCGGCTACT 60.152 63.158 0.00 0.00 0.00 2.57
242 243 0.759436 TTCCCCTCATCTCCGGCTAC 60.759 60.000 0.00 0.00 0.00 3.58
243 244 0.031515 TTTCCCCTCATCTCCGGCTA 60.032 55.000 0.00 0.00 0.00 3.93
244 245 1.306997 TTTCCCCTCATCTCCGGCT 60.307 57.895 0.00 0.00 0.00 5.52
245 246 1.147153 CTTTCCCCTCATCTCCGGC 59.853 63.158 0.00 0.00 0.00 6.13
246 247 0.691078 TCCTTTCCCCTCATCTCCGG 60.691 60.000 0.00 0.00 0.00 5.14
247 248 0.755686 CTCCTTTCCCCTCATCTCCG 59.244 60.000 0.00 0.00 0.00 4.63
248 249 2.182516 TCTCCTTTCCCCTCATCTCC 57.817 55.000 0.00 0.00 0.00 3.71
249 250 3.379452 TCTTCTCCTTTCCCCTCATCTC 58.621 50.000 0.00 0.00 0.00 2.75
250 251 3.498614 TCTTCTCCTTTCCCCTCATCT 57.501 47.619 0.00 0.00 0.00 2.90
251 252 4.459330 CAATCTTCTCCTTTCCCCTCATC 58.541 47.826 0.00 0.00 0.00 2.92
252 253 3.203934 CCAATCTTCTCCTTTCCCCTCAT 59.796 47.826 0.00 0.00 0.00 2.90
253 254 2.578021 CCAATCTTCTCCTTTCCCCTCA 59.422 50.000 0.00 0.00 0.00 3.86
254 255 2.846827 TCCAATCTTCTCCTTTCCCCTC 59.153 50.000 0.00 0.00 0.00 4.30
255 256 2.578480 GTCCAATCTTCTCCTTTCCCCT 59.422 50.000 0.00 0.00 0.00 4.79
256 257 2.681097 CGTCCAATCTTCTCCTTTCCCC 60.681 54.545 0.00 0.00 0.00 4.81
257 258 2.633488 CGTCCAATCTTCTCCTTTCCC 58.367 52.381 0.00 0.00 0.00 3.97
258 259 2.010497 GCGTCCAATCTTCTCCTTTCC 58.990 52.381 0.00 0.00 0.00 3.13
259 260 2.010497 GGCGTCCAATCTTCTCCTTTC 58.990 52.381 0.00 0.00 0.00 2.62
260 261 1.351017 TGGCGTCCAATCTTCTCCTTT 59.649 47.619 0.00 0.00 0.00 3.11
261 262 0.984230 TGGCGTCCAATCTTCTCCTT 59.016 50.000 0.00 0.00 0.00 3.36
262 263 0.984230 TTGGCGTCCAATCTTCTCCT 59.016 50.000 7.15 0.00 38.75 3.69
267 268 2.028203 CCCATTTTTGGCGTCCAATCTT 60.028 45.455 11.30 0.00 43.55 2.40
275 276 2.926420 GCGGACCCATTTTTGGCGT 61.926 57.895 0.00 0.00 0.00 5.68
279 280 2.126110 GCCGCGGACCCATTTTTG 60.126 61.111 33.48 0.00 0.00 2.44
306 307 4.708726 ATACATGTCTCTTTTGCTTGCC 57.291 40.909 0.00 0.00 0.00 4.52
469 475 1.478510 CTATAGCACCCCCATCGCTAG 59.521 57.143 0.00 0.00 41.28 3.42
491 498 4.409247 AGACTTCACCACTATTATGGGGTC 59.591 45.833 0.00 0.00 44.30 4.46
538 570 9.255304 CAAAAATATCGACCCTCAAAAGAAAAA 57.745 29.630 0.00 0.00 0.00 1.94
539 571 8.417884 ACAAAAATATCGACCCTCAAAAGAAAA 58.582 29.630 0.00 0.00 0.00 2.29
540 572 7.947282 ACAAAAATATCGACCCTCAAAAGAAA 58.053 30.769 0.00 0.00 0.00 2.52
541 573 7.519032 ACAAAAATATCGACCCTCAAAAGAA 57.481 32.000 0.00 0.00 0.00 2.52
542 574 8.624367 TTACAAAAATATCGACCCTCAAAAGA 57.376 30.769 0.00 0.00 0.00 2.52
543 575 8.512138 ACTTACAAAAATATCGACCCTCAAAAG 58.488 33.333 0.00 0.00 0.00 2.27
544 576 8.293867 CACTTACAAAAATATCGACCCTCAAAA 58.706 33.333 0.00 0.00 0.00 2.44
545 577 7.662258 TCACTTACAAAAATATCGACCCTCAAA 59.338 33.333 0.00 0.00 0.00 2.69
546 578 7.162761 TCACTTACAAAAATATCGACCCTCAA 58.837 34.615 0.00 0.00 0.00 3.02
547 579 6.703319 TCACTTACAAAAATATCGACCCTCA 58.297 36.000 0.00 0.00 0.00 3.86
548 580 6.258068 CCTCACTTACAAAAATATCGACCCTC 59.742 42.308 0.00 0.00 0.00 4.30
549 581 6.113411 CCTCACTTACAAAAATATCGACCCT 58.887 40.000 0.00 0.00 0.00 4.34
550 582 5.296035 CCCTCACTTACAAAAATATCGACCC 59.704 44.000 0.00 0.00 0.00 4.46
551 583 5.296035 CCCCTCACTTACAAAAATATCGACC 59.704 44.000 0.00 0.00 0.00 4.79
552 584 5.878669 ACCCCTCACTTACAAAAATATCGAC 59.121 40.000 0.00 0.00 0.00 4.20
553 585 6.057321 ACCCCTCACTTACAAAAATATCGA 57.943 37.500 0.00 0.00 0.00 3.59
554 586 8.985805 GTATACCCCTCACTTACAAAAATATCG 58.014 37.037 0.00 0.00 0.00 2.92
555 587 9.281371 GGTATACCCCTCACTTACAAAAATATC 57.719 37.037 11.17 0.00 0.00 1.63
556 588 7.935210 CGGTATACCCCTCACTTACAAAAATAT 59.065 37.037 16.47 0.00 0.00 1.28
557 589 7.274447 CGGTATACCCCTCACTTACAAAAATA 58.726 38.462 16.47 0.00 0.00 1.40
558 590 6.117488 CGGTATACCCCTCACTTACAAAAAT 58.883 40.000 16.47 0.00 0.00 1.82
608 640 2.705410 CTCCCCTCTCCCCATCCA 59.295 66.667 0.00 0.00 0.00 3.41
609 641 2.122189 CCTCCCCTCTCCCCATCC 60.122 72.222 0.00 0.00 0.00 3.51
611 643 4.523282 GCCCTCCCCTCTCCCCAT 62.523 72.222 0.00 0.00 0.00 4.00
616 648 4.423209 ACCCAGCCCTCCCCTCTC 62.423 72.222 0.00 0.00 0.00 3.20
617 649 4.748798 CACCCAGCCCTCCCCTCT 62.749 72.222 0.00 0.00 0.00 3.69
828 860 9.193133 GTACGCGCATATATGATCCTAATTTAT 57.807 33.333 17.10 0.00 0.00 1.40
829 861 7.377662 CGTACGCGCATATATGATCCTAATTTA 59.622 37.037 17.10 0.00 0.00 1.40
830 862 6.198403 CGTACGCGCATATATGATCCTAATTT 59.802 38.462 17.10 0.00 0.00 1.82
875 912 1.000717 GCCTAGAGATGCTCGACTTCC 60.001 57.143 0.00 0.00 35.36 3.46
1116 1158 1.602237 GTTGCCGAAGAGGATGGGA 59.398 57.895 0.00 0.00 45.00 4.37
1379 1427 1.457346 ATCGGACGTTACCTCGAAGT 58.543 50.000 0.00 0.00 35.25 3.01
1402 1454 2.285368 TGGCGGAGGTTCAGGGAT 60.285 61.111 0.00 0.00 0.00 3.85
1451 1513 5.573282 CAGATTCAGCAAGCAAAAATCAGAG 59.427 40.000 13.02 3.68 0.00 3.35
1452 1514 5.466819 CAGATTCAGCAAGCAAAAATCAGA 58.533 37.500 13.02 0.00 0.00 3.27
1512 1574 4.699522 AGGAACACCGCCGGAAGC 62.700 66.667 11.71 0.00 38.52 3.86
1548 1610 0.391228 TGACGTTTACCTGCAGCAGA 59.609 50.000 24.90 1.09 32.44 4.26
1612 1694 6.997476 TGCCATCTTTGCTACATTCATATGTA 59.003 34.615 1.90 0.00 43.12 2.29
1613 1695 5.829391 TGCCATCTTTGCTACATTCATATGT 59.171 36.000 1.90 0.00 46.49 2.29
1614 1696 6.321848 TGCCATCTTTGCTACATTCATATG 57.678 37.500 0.00 0.00 37.79 1.78
1615 1697 8.640063 TTATGCCATCTTTGCTACATTCATAT 57.360 30.769 0.00 0.00 0.00 1.78
1674 1757 6.338937 GCTGCTACTTAGTACTGTTGGTAAT 58.661 40.000 5.39 0.00 33.13 1.89
1678 1761 3.522553 GGCTGCTACTTAGTACTGTTGG 58.477 50.000 5.39 0.00 0.00 3.77
1706 1789 3.809279 TGTTGAGTATCTGTGCACACAAG 59.191 43.478 17.42 6.86 41.33 3.16
1893 1990 4.895224 AGACAGCATGCATAAACATCAG 57.105 40.909 21.98 0.00 42.53 2.90
1962 2059 7.502120 AGAAGCTTCAATAACGCAATATCAT 57.498 32.000 27.57 0.00 0.00 2.45
1963 2060 6.925610 AGAAGCTTCAATAACGCAATATCA 57.074 33.333 27.57 0.00 0.00 2.15
1993 2090 1.521681 CATCTTCTTCCCGGCGACC 60.522 63.158 9.30 0.00 0.00 4.79
2071 2168 1.926511 GCCCACGAGGTGCTTGATTG 61.927 60.000 0.00 0.00 38.26 2.67
2072 2169 1.675641 GCCCACGAGGTGCTTGATT 60.676 57.895 0.00 0.00 38.26 2.57
2085 2182 3.804193 GCAGCTACGCTTGCCCAC 61.804 66.667 0.00 0.00 36.40 4.61
2095 2192 1.936547 GCCAGATACAGTTGCAGCTAC 59.063 52.381 1.52 0.00 0.00 3.58
2112 2209 1.107114 GAGAAGGATGTCTCGAGCCA 58.893 55.000 7.81 1.94 35.04 4.75
2148 2245 4.947147 TGGCAAGACACCACCGGC 62.947 66.667 0.00 0.00 30.29 6.13
2149 2246 1.826054 TTTGGCAAGACACCACCGG 60.826 57.895 0.00 0.00 36.76 5.28
2150 2247 1.358759 GTTTGGCAAGACACCACCG 59.641 57.895 0.00 0.00 36.76 4.94
2151 2248 1.040339 TGGTTTGGCAAGACACCACC 61.040 55.000 16.34 12.75 36.76 4.61
2279 2450 4.733725 TTAGGCCCAGGTCCGGCT 62.734 66.667 0.00 2.56 46.24 5.52
2442 2615 0.038166 TGGCAGAAAACCTAGGCCTG 59.962 55.000 17.99 12.10 44.85 4.85
2470 2643 1.322538 TAAGTCGGGTCGGGCCTAAC 61.323 60.000 0.84 0.30 37.43 2.34
2540 2730 5.121768 CCGACAACCATCGAGTTAAATTTCT 59.878 40.000 0.00 0.00 45.13 2.52
2545 2735 3.256383 TCTCCGACAACCATCGAGTTAAA 59.744 43.478 0.00 0.00 45.13 1.52
2546 2736 2.821378 TCTCCGACAACCATCGAGTTAA 59.179 45.455 0.00 0.00 45.13 2.01
2547 2737 2.163010 GTCTCCGACAACCATCGAGTTA 59.837 50.000 0.00 0.00 45.13 2.24
2548 2738 1.067776 GTCTCCGACAACCATCGAGTT 60.068 52.381 0.00 0.00 45.13 3.01
2549 2739 0.526662 GTCTCCGACAACCATCGAGT 59.473 55.000 0.00 0.00 45.13 4.18
2576 2766 5.244178 CGAATAGCCTTACTTAGGGATCTGT 59.756 44.000 0.00 0.00 44.91 3.41
2586 2776 9.628500 ATTTATCTTTTCCGAATAGCCTTACTT 57.372 29.630 0.00 0.00 0.00 2.24
2598 2788 3.388676 TCCGGCCTATTTATCTTTTCCGA 59.611 43.478 0.00 0.00 38.02 4.55
2603 2793 4.724279 ACCATCCGGCCTATTTATCTTT 57.276 40.909 0.00 0.00 34.57 2.52
2604 2794 5.072600 TGTTACCATCCGGCCTATTTATCTT 59.927 40.000 0.00 0.00 34.57 2.40
2609 2799 3.201266 TCTTGTTACCATCCGGCCTATTT 59.799 43.478 0.00 0.00 34.57 1.40
2611 2801 2.368875 CTCTTGTTACCATCCGGCCTAT 59.631 50.000 0.00 0.00 34.57 2.57
2616 2806 0.810031 CGCCTCTTGTTACCATCCGG 60.810 60.000 0.00 0.00 38.77 5.14
2640 2830 3.637229 TCAAGAGCCCGAATCTAGGTAAG 59.363 47.826 0.00 0.00 0.00 2.34
2652 2842 3.095347 GCCCCTAGTCAAGAGCCCG 62.095 68.421 0.00 0.00 0.00 6.13
2653 2843 1.348775 ATGCCCCTAGTCAAGAGCCC 61.349 60.000 0.00 0.00 0.00 5.19
2666 2856 4.788679 ACCTTGTATACTTTGTATGCCCC 58.211 43.478 4.17 0.00 0.00 5.80
2747 2937 1.913419 CTTGTAACTCTAGGGCCCCAA 59.087 52.381 21.43 12.00 0.00 4.12
2748 2938 1.079825 TCTTGTAACTCTAGGGCCCCA 59.920 52.381 21.43 2.83 0.00 4.96
2773 2963 3.440228 GACTCTCTTTCACCGACATAGC 58.560 50.000 0.00 0.00 0.00 2.97
2774 2964 3.697045 AGGACTCTCTTTCACCGACATAG 59.303 47.826 0.00 0.00 0.00 2.23
2775 2965 3.695060 GAGGACTCTCTTTCACCGACATA 59.305 47.826 0.00 0.00 37.07 2.29
2776 2966 2.494073 GAGGACTCTCTTTCACCGACAT 59.506 50.000 0.00 0.00 37.07 3.06
2777 2967 1.887198 GAGGACTCTCTTTCACCGACA 59.113 52.381 0.00 0.00 37.07 4.35
2778 2968 1.202817 GGAGGACTCTCTTTCACCGAC 59.797 57.143 0.00 0.00 39.86 4.79
2779 2969 1.546961 GGAGGACTCTCTTTCACCGA 58.453 55.000 0.00 0.00 39.86 4.69
2780 2970 0.171455 CGGAGGACTCTCTTTCACCG 59.829 60.000 0.00 0.00 39.86 4.94
2781 2971 0.108567 GCGGAGGACTCTCTTTCACC 60.109 60.000 0.00 0.00 39.86 4.02
2782 2972 0.456995 CGCGGAGGACTCTCTTTCAC 60.457 60.000 0.00 0.00 39.86 3.18
2783 2973 0.608308 TCGCGGAGGACTCTCTTTCA 60.608 55.000 6.13 0.00 39.86 2.69
2784 2974 0.526662 TTCGCGGAGGACTCTCTTTC 59.473 55.000 6.13 0.00 39.86 2.62
2785 2975 0.244178 GTTCGCGGAGGACTCTCTTT 59.756 55.000 6.13 0.00 39.86 2.52
2786 2976 1.596895 GGTTCGCGGAGGACTCTCTT 61.597 60.000 6.13 0.00 39.86 2.85
2787 2977 2.047443 GGTTCGCGGAGGACTCTCT 61.047 63.158 6.13 0.00 39.86 3.10
2788 2978 2.047443 AGGTTCGCGGAGGACTCTC 61.047 63.158 6.13 0.00 39.25 3.20
2789 2979 2.035940 AGGTTCGCGGAGGACTCT 59.964 61.111 6.13 0.00 0.00 3.24
2790 2980 2.182030 CAGGTTCGCGGAGGACTC 59.818 66.667 6.13 0.00 0.00 3.36
2791 2981 2.282958 TCAGGTTCGCGGAGGACT 60.283 61.111 6.13 0.00 0.00 3.85
2792 2982 2.126031 GTCAGGTTCGCGGAGGAC 60.126 66.667 6.13 1.65 0.00 3.85
2793 2983 1.874345 GAAGTCAGGTTCGCGGAGGA 61.874 60.000 6.13 0.00 0.00 3.71
2794 2984 1.446272 GAAGTCAGGTTCGCGGAGG 60.446 63.158 6.13 0.00 0.00 4.30
2795 2985 1.446272 GGAAGTCAGGTTCGCGGAG 60.446 63.158 6.13 0.00 0.00 4.63
2796 2986 1.469335 AAGGAAGTCAGGTTCGCGGA 61.469 55.000 6.13 0.00 0.00 5.54
2797 2987 1.004918 AAGGAAGTCAGGTTCGCGG 60.005 57.895 6.13 0.00 0.00 6.46
2798 2988 0.600255 ACAAGGAAGTCAGGTTCGCG 60.600 55.000 0.00 0.00 0.00 5.87
2799 2989 1.594331 AACAAGGAAGTCAGGTTCGC 58.406 50.000 0.00 0.00 0.00 4.70
2800 2990 3.625764 TCAAAACAAGGAAGTCAGGTTCG 59.374 43.478 0.00 0.00 0.00 3.95
2801 2991 5.576447 TTCAAAACAAGGAAGTCAGGTTC 57.424 39.130 0.00 0.00 0.00 3.62
2802 2992 5.682212 GCATTCAAAACAAGGAAGTCAGGTT 60.682 40.000 0.00 0.00 0.00 3.50
2803 2993 4.202151 GCATTCAAAACAAGGAAGTCAGGT 60.202 41.667 0.00 0.00 0.00 4.00
2804 2994 4.202141 TGCATTCAAAACAAGGAAGTCAGG 60.202 41.667 0.00 0.00 0.00 3.86
2805 2995 4.935702 TGCATTCAAAACAAGGAAGTCAG 58.064 39.130 0.00 0.00 0.00 3.51
2806 2996 4.998671 TGCATTCAAAACAAGGAAGTCA 57.001 36.364 0.00 0.00 0.00 3.41
2807 2997 4.207019 CGTTGCATTCAAAACAAGGAAGTC 59.793 41.667 0.00 0.00 33.37 3.01
2808 2998 4.111916 CGTTGCATTCAAAACAAGGAAGT 58.888 39.130 0.00 0.00 33.37 3.01
2809 2999 3.060339 GCGTTGCATTCAAAACAAGGAAG 60.060 43.478 0.00 0.00 33.37 3.46
2810 3000 2.863137 GCGTTGCATTCAAAACAAGGAA 59.137 40.909 0.00 0.00 33.37 3.36
2811 3001 2.100584 AGCGTTGCATTCAAAACAAGGA 59.899 40.909 0.00 0.00 33.37 3.36
2812 3002 2.472816 AGCGTTGCATTCAAAACAAGG 58.527 42.857 0.00 0.00 33.37 3.61
2813 3003 4.519191 AAAGCGTTGCATTCAAAACAAG 57.481 36.364 0.00 0.00 33.37 3.16
2814 3004 4.935885 AAAAGCGTTGCATTCAAAACAA 57.064 31.818 0.00 0.00 33.37 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.