Multiple sequence alignment - TraesCS7D01G399200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G399200 chr7D 100.000 3842 0 0 1 3842 515463638 515467479 0.000000e+00 7095
1 TraesCS7D01G399200 chr7D 93.447 351 22 1 1 350 144588211 144587861 1.580000e-143 520
2 TraesCS7D01G399200 chr7B 96.259 2967 81 11 895 3836 546011326 546014287 0.000000e+00 4837
3 TraesCS7D01G399200 chr7A 94.642 2986 119 12 885 3839 589121188 589124163 0.000000e+00 4590
4 TraesCS7D01G399200 chr7A 93.182 352 22 2 1 350 285083753 285083402 2.050000e-142 516
5 TraesCS7D01G399200 chr2D 94.302 351 19 1 1 350 334926181 334925831 1.570000e-148 536
6 TraesCS7D01G399200 chr2D 94.000 350 21 0 1 350 211585073 211585422 7.310000e-147 531
7 TraesCS7D01G399200 chr2D 93.447 351 22 1 1 350 129372542 129372192 1.580000e-143 520
8 TraesCS7D01G399200 chr2D 83.094 278 32 13 586 859 12289126 12289392 4.960000e-59 239
9 TraesCS7D01G399200 chr6D 93.732 351 21 1 1 350 466598782 466599132 3.400000e-145 525
10 TraesCS7D01G399200 chr3D 93.429 350 21 1 1 350 234568464 234568811 5.690000e-143 518
11 TraesCS7D01G399200 chr4D 93.162 351 23 1 1 350 6747461 6747811 7.360000e-142 514
12 TraesCS7D01G399200 chr4D 80.952 420 48 18 502 893 320042974 320043389 1.730000e-78 303
13 TraesCS7D01G399200 chr4D 79.525 337 47 12 564 888 57877999 57877673 1.800000e-53 220
14 TraesCS7D01G399200 chr4D 79.141 326 51 10 565 881 461554369 461554052 3.890000e-50 209
15 TraesCS7D01G399200 chr5A 91.421 373 26 5 1 370 215473569 215473200 1.230000e-139 507
16 TraesCS7D01G399200 chr4B 81.141 403 54 16 502 887 400685627 400685230 1.730000e-78 303
17 TraesCS7D01G399200 chr4B 79.365 378 62 15 504 871 664761436 664761807 6.370000e-63 252
18 TraesCS7D01G399200 chr2A 79.420 379 50 16 503 865 564981336 564981702 3.830000e-60 243
19 TraesCS7D01G399200 chr1D 79.133 369 63 12 512 871 415397767 415398130 3.830000e-60 243
20 TraesCS7D01G399200 chr1D 81.145 297 47 9 503 793 463453143 463452850 2.990000e-56 230


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G399200 chr7D 515463638 515467479 3841 False 7095 7095 100.000 1 3842 1 chr7D.!!$F1 3841
1 TraesCS7D01G399200 chr7B 546011326 546014287 2961 False 4837 4837 96.259 895 3836 1 chr7B.!!$F1 2941
2 TraesCS7D01G399200 chr7A 589121188 589124163 2975 False 4590 4590 94.642 885 3839 1 chr7A.!!$F1 2954

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
877 878 0.108424 GCTGAGACTGAGCACCGAAT 60.108 55.0 9.23 0.0 36.4 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2869 2871 0.684535 TCACAGGACAGAATCGCCAA 59.315 50.0 0.0 0.0 0.0 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.844349 TCTTCACCCCCTCTCTATTTTG 57.156 45.455 0.00 0.00 0.00 2.44
25 26 4.435137 TCTTCACCCCCTCTCTATTTTGA 58.565 43.478 0.00 0.00 0.00 2.69
26 27 4.471386 TCTTCACCCCCTCTCTATTTTGAG 59.529 45.833 0.00 0.00 35.52 3.02
27 28 3.115390 TCACCCCCTCTCTATTTTGAGG 58.885 50.000 0.00 0.00 46.91 3.86
28 29 2.846827 CACCCCCTCTCTATTTTGAGGT 59.153 50.000 8.04 0.00 46.17 3.85
29 30 3.116174 ACCCCCTCTCTATTTTGAGGTC 58.884 50.000 8.04 0.00 46.17 3.85
30 31 3.115390 CCCCCTCTCTATTTTGAGGTCA 58.885 50.000 8.04 0.00 46.17 4.02
31 32 3.523564 CCCCCTCTCTATTTTGAGGTCAA 59.476 47.826 8.04 0.00 46.17 3.18
32 33 4.166919 CCCCCTCTCTATTTTGAGGTCAAT 59.833 45.833 8.04 0.00 46.17 2.57
33 34 5.340360 CCCCCTCTCTATTTTGAGGTCAATT 60.340 44.000 8.04 0.00 46.17 2.32
34 35 5.825151 CCCCTCTCTATTTTGAGGTCAATTC 59.175 44.000 8.04 0.00 46.17 2.17
35 36 6.418101 CCCTCTCTATTTTGAGGTCAATTCA 58.582 40.000 8.04 0.00 46.17 2.57
36 37 6.317391 CCCTCTCTATTTTGAGGTCAATTCAC 59.683 42.308 8.04 0.00 46.17 3.18
37 38 6.317391 CCTCTCTATTTTGAGGTCAATTCACC 59.683 42.308 0.00 0.00 43.49 4.02
38 39 5.874810 TCTCTATTTTGAGGTCAATTCACCG 59.125 40.000 0.00 0.00 41.90 4.94
39 40 5.556915 TCTATTTTGAGGTCAATTCACCGT 58.443 37.500 0.00 0.00 41.90 4.83
40 41 6.703319 TCTATTTTGAGGTCAATTCACCGTA 58.297 36.000 0.00 0.00 41.90 4.02
41 42 7.335627 TCTATTTTGAGGTCAATTCACCGTAT 58.664 34.615 0.00 0.00 41.90 3.06
42 43 6.834168 ATTTTGAGGTCAATTCACCGTATT 57.166 33.333 0.00 0.00 41.90 1.89
43 44 6.642707 TTTTGAGGTCAATTCACCGTATTT 57.357 33.333 0.00 0.00 41.90 1.40
44 45 6.642707 TTTGAGGTCAATTCACCGTATTTT 57.357 33.333 0.00 0.00 41.90 1.82
45 46 6.642707 TTGAGGTCAATTCACCGTATTTTT 57.357 33.333 0.00 0.00 41.90 1.94
46 47 7.747155 TTGAGGTCAATTCACCGTATTTTTA 57.253 32.000 0.00 0.00 41.90 1.52
47 48 7.372451 TGAGGTCAATTCACCGTATTTTTAG 57.628 36.000 0.00 0.00 41.90 1.85
48 49 6.373216 TGAGGTCAATTCACCGTATTTTTAGG 59.627 38.462 0.00 0.00 41.90 2.69
49 50 6.243148 AGGTCAATTCACCGTATTTTTAGGT 58.757 36.000 0.00 0.00 41.90 3.08
50 51 6.717997 AGGTCAATTCACCGTATTTTTAGGTT 59.282 34.615 0.00 0.00 41.90 3.50
51 52 7.231925 AGGTCAATTCACCGTATTTTTAGGTTT 59.768 33.333 0.00 0.00 41.90 3.27
52 53 7.539710 GGTCAATTCACCGTATTTTTAGGTTTC 59.460 37.037 0.00 0.00 35.85 2.78
53 54 7.269724 GTCAATTCACCGTATTTTTAGGTTTCG 59.730 37.037 0.00 0.00 35.85 3.46
54 55 6.806388 ATTCACCGTATTTTTAGGTTTCGT 57.194 33.333 0.00 0.00 35.85 3.85
55 56 7.903995 ATTCACCGTATTTTTAGGTTTCGTA 57.096 32.000 0.00 0.00 35.85 3.43
56 57 7.721286 TTCACCGTATTTTTAGGTTTCGTAA 57.279 32.000 0.00 0.00 35.85 3.18
57 58 7.721286 TCACCGTATTTTTAGGTTTCGTAAA 57.279 32.000 0.00 0.00 35.85 2.01
58 59 8.321650 TCACCGTATTTTTAGGTTTCGTAAAT 57.678 30.769 0.00 0.00 35.85 1.40
59 60 8.782144 TCACCGTATTTTTAGGTTTCGTAAATT 58.218 29.630 0.00 0.00 35.85 1.82
60 61 9.396938 CACCGTATTTTTAGGTTTCGTAAATTT 57.603 29.630 0.00 0.00 35.85 1.82
61 62 9.964303 ACCGTATTTTTAGGTTTCGTAAATTTT 57.036 25.926 0.00 0.00 33.96 1.82
71 72 8.965986 AGGTTTCGTAAATTTTCTCTTATTGC 57.034 30.769 0.00 0.00 0.00 3.56
72 73 8.573035 AGGTTTCGTAAATTTTCTCTTATTGCA 58.427 29.630 0.00 0.00 0.00 4.08
73 74 9.353999 GGTTTCGTAAATTTTCTCTTATTGCAT 57.646 29.630 0.00 0.00 0.00 3.96
76 77 9.697250 TTCGTAAATTTTCTCTTATTGCATACG 57.303 29.630 0.00 0.00 34.30 3.06
77 78 8.875803 TCGTAAATTTTCTCTTATTGCATACGT 58.124 29.630 0.00 0.00 34.54 3.57
86 87 9.647797 TTCTCTTATTGCATACGTAAAAAGAGA 57.352 29.630 19.51 19.51 0.00 3.10
87 88 9.647797 TCTCTTATTGCATACGTAAAAAGAGAA 57.352 29.630 20.32 11.56 0.00 2.87
88 89 9.690434 CTCTTATTGCATACGTAAAAAGAGAAC 57.310 33.333 17.72 0.00 0.00 3.01
89 90 9.210329 TCTTATTGCATACGTAAAAAGAGAACA 57.790 29.630 0.00 0.00 0.00 3.18
90 91 9.988350 CTTATTGCATACGTAAAAAGAGAACAT 57.012 29.630 0.00 0.00 0.00 2.71
93 94 9.988350 ATTGCATACGTAAAAAGAGAACATAAG 57.012 29.630 0.00 0.00 0.00 1.73
94 95 8.766000 TGCATACGTAAAAAGAGAACATAAGA 57.234 30.769 0.00 0.00 0.00 2.10
95 96 9.210329 TGCATACGTAAAAAGAGAACATAAGAA 57.790 29.630 0.00 0.00 0.00 2.52
110 111 9.355215 AGAACATAAGAAAATATATACTCGCCG 57.645 33.333 0.00 0.00 0.00 6.46
111 112 9.136952 GAACATAAGAAAATATATACTCGCCGT 57.863 33.333 0.00 0.00 0.00 5.68
156 157 9.842444 TGTAAAGTTACGAACGTAAAAACATAC 57.158 29.630 18.81 16.31 41.51 2.39
157 158 9.842444 GTAAAGTTACGAACGTAAAAACATACA 57.158 29.630 18.81 0.00 41.51 2.29
165 166 8.842777 ACGAACGTAAAAACATACATAAAATGC 58.157 29.630 0.00 0.00 0.00 3.56
166 167 8.034172 CGAACGTAAAAACATACATAAAATGCG 58.966 33.333 0.00 0.00 0.00 4.73
167 168 8.951954 AACGTAAAAACATACATAAAATGCGA 57.048 26.923 0.00 0.00 0.00 5.10
168 169 9.562583 AACGTAAAAACATACATAAAATGCGAT 57.437 25.926 0.00 0.00 0.00 4.58
176 177 9.897744 AACATACATAAAATGCGATATTTCTGG 57.102 29.630 0.00 0.00 0.00 3.86
177 178 9.066892 ACATACATAAAATGCGATATTTCTGGT 57.933 29.630 0.00 0.00 0.00 4.00
178 179 9.546909 CATACATAAAATGCGATATTTCTGGTC 57.453 33.333 0.00 0.00 0.00 4.02
179 180 7.807977 ACATAAAATGCGATATTTCTGGTCT 57.192 32.000 0.00 0.00 0.00 3.85
180 181 8.225603 ACATAAAATGCGATATTTCTGGTCTT 57.774 30.769 0.00 0.00 0.00 3.01
181 182 9.337396 ACATAAAATGCGATATTTCTGGTCTTA 57.663 29.630 0.00 0.00 0.00 2.10
186 187 7.907214 ATGCGATATTTCTGGTCTTATAACC 57.093 36.000 0.00 0.00 39.94 2.85
187 188 7.062749 TGCGATATTTCTGGTCTTATAACCT 57.937 36.000 0.00 0.00 40.20 3.50
188 189 8.185506 TGCGATATTTCTGGTCTTATAACCTA 57.814 34.615 0.00 0.00 40.20 3.08
189 190 8.812972 TGCGATATTTCTGGTCTTATAACCTAT 58.187 33.333 0.00 0.00 40.20 2.57
190 191 9.654663 GCGATATTTCTGGTCTTATAACCTATT 57.345 33.333 0.00 0.00 40.20 1.73
257 258 9.186323 TGAATGTAACAATTTGTATTCCAAACG 57.814 29.630 15.77 0.00 45.43 3.60
258 259 9.187455 GAATGTAACAATTTGTATTCCAAACGT 57.813 29.630 1.76 0.00 45.43 3.99
274 275 9.744468 ATTCCAAACGTAATTTATTTATGGAGC 57.256 29.630 0.00 0.00 35.97 4.70
275 276 7.411274 TCCAAACGTAATTTATTTATGGAGCG 58.589 34.615 0.00 0.00 32.05 5.03
276 277 7.280428 TCCAAACGTAATTTATTTATGGAGCGA 59.720 33.333 0.00 0.00 32.05 4.93
277 278 8.073768 CCAAACGTAATTTATTTATGGAGCGAT 58.926 33.333 0.00 0.00 32.05 4.58
278 279 9.103048 CAAACGTAATTTATTTATGGAGCGATC 57.897 33.333 0.00 0.00 32.05 3.69
279 280 7.045725 ACGTAATTTATTTATGGAGCGATCG 57.954 36.000 11.69 11.69 32.05 3.69
280 281 6.643770 ACGTAATTTATTTATGGAGCGATCGT 59.356 34.615 17.81 3.24 32.05 3.73
281 282 7.809331 ACGTAATTTATTTATGGAGCGATCGTA 59.191 33.333 17.81 0.00 32.05 3.43
282 283 8.641155 CGTAATTTATTTATGGAGCGATCGTAA 58.359 33.333 17.81 3.98 0.00 3.18
283 284 9.953825 GTAATTTATTTATGGAGCGATCGTAAG 57.046 33.333 17.81 0.00 0.00 2.34
297 298 3.003394 TCGTAAGATTACCTCGGGTGA 57.997 47.619 5.90 0.00 45.01 4.02
298 299 3.355378 TCGTAAGATTACCTCGGGTGAA 58.645 45.455 5.90 0.00 45.01 3.18
299 300 3.379372 TCGTAAGATTACCTCGGGTGAAG 59.621 47.826 5.90 0.00 45.01 3.02
300 301 3.379372 CGTAAGATTACCTCGGGTGAAGA 59.621 47.826 5.90 0.00 36.23 2.87
301 302 4.142315 CGTAAGATTACCTCGGGTGAAGAA 60.142 45.833 5.90 0.00 36.23 2.52
302 303 5.451520 CGTAAGATTACCTCGGGTGAAGAAT 60.452 44.000 5.90 0.00 36.23 2.40
303 304 5.437191 AAGATTACCTCGGGTGAAGAATT 57.563 39.130 5.90 0.00 36.19 2.17
304 305 6.555463 AAGATTACCTCGGGTGAAGAATTA 57.445 37.500 5.90 0.00 36.19 1.40
305 306 6.749036 AGATTACCTCGGGTGAAGAATTAT 57.251 37.500 5.90 0.00 36.19 1.28
306 307 7.138054 AGATTACCTCGGGTGAAGAATTATT 57.862 36.000 5.90 0.00 36.19 1.40
307 308 7.574607 AGATTACCTCGGGTGAAGAATTATTT 58.425 34.615 5.90 0.00 36.19 1.40
308 309 8.711170 AGATTACCTCGGGTGAAGAATTATTTA 58.289 33.333 5.90 0.00 36.19 1.40
309 310 9.503399 GATTACCTCGGGTGAAGAATTATTTAT 57.497 33.333 5.90 0.00 36.19 1.40
310 311 9.862149 ATTACCTCGGGTGAAGAATTATTTATT 57.138 29.630 5.90 0.00 36.19 1.40
311 312 7.803279 ACCTCGGGTGAAGAATTATTTATTC 57.197 36.000 0.00 0.00 37.77 1.75
312 313 7.574607 ACCTCGGGTGAAGAATTATTTATTCT 58.425 34.615 6.36 0.00 43.97 2.40
313 314 7.499232 ACCTCGGGTGAAGAATTATTTATTCTG 59.501 37.037 0.00 0.00 42.58 3.02
323 324 7.112452 GAATTATTTATTCTGCAACCTGGGT 57.888 36.000 0.00 0.00 39.67 4.51
324 325 5.913137 TTATTTATTCTGCAACCTGGGTG 57.087 39.130 7.56 7.56 0.00 4.61
325 326 3.517296 TTTATTCTGCAACCTGGGTGA 57.483 42.857 17.75 0.00 0.00 4.02
326 327 3.737559 TTATTCTGCAACCTGGGTGAT 57.262 42.857 17.75 2.05 0.00 3.06
327 328 1.843368 ATTCTGCAACCTGGGTGATG 58.157 50.000 17.75 7.00 0.00 3.07
328 329 0.770499 TTCTGCAACCTGGGTGATGA 59.230 50.000 17.75 9.47 0.00 2.92
329 330 0.770499 TCTGCAACCTGGGTGATGAA 59.230 50.000 17.75 0.00 0.00 2.57
330 331 1.355381 TCTGCAACCTGGGTGATGAAT 59.645 47.619 17.75 0.00 0.00 2.57
331 332 2.575735 TCTGCAACCTGGGTGATGAATA 59.424 45.455 17.75 0.00 0.00 1.75
332 333 2.947652 CTGCAACCTGGGTGATGAATAG 59.052 50.000 17.75 0.00 0.00 1.73
333 334 2.308570 TGCAACCTGGGTGATGAATAGT 59.691 45.455 17.75 0.00 0.00 2.12
334 335 3.521531 TGCAACCTGGGTGATGAATAGTA 59.478 43.478 17.75 0.00 0.00 1.82
335 336 4.165950 TGCAACCTGGGTGATGAATAGTAT 59.834 41.667 17.75 0.00 0.00 2.12
336 337 5.133221 GCAACCTGGGTGATGAATAGTATT 58.867 41.667 17.75 0.00 0.00 1.89
337 338 6.126623 TGCAACCTGGGTGATGAATAGTATTA 60.127 38.462 17.75 0.00 0.00 0.98
338 339 6.204882 GCAACCTGGGTGATGAATAGTATTAC 59.795 42.308 17.75 0.00 0.00 1.89
339 340 7.509546 CAACCTGGGTGATGAATAGTATTACT 58.490 38.462 5.61 1.30 0.00 2.24
340 341 8.647796 CAACCTGGGTGATGAATAGTATTACTA 58.352 37.037 5.61 6.03 34.82 1.82
341 342 8.974292 ACCTGGGTGATGAATAGTATTACTAT 57.026 34.615 10.04 10.04 42.86 2.12
412 413 8.576442 ACACAAATTTAAGACAAGAGTATTGGG 58.424 33.333 2.04 0.00 30.66 4.12
413 414 8.792633 CACAAATTTAAGACAAGAGTATTGGGA 58.207 33.333 2.04 0.00 30.66 4.37
414 415 9.014297 ACAAATTTAAGACAAGAGTATTGGGAG 57.986 33.333 2.04 0.00 30.66 4.30
415 416 8.462016 CAAATTTAAGACAAGAGTATTGGGAGG 58.538 37.037 2.04 0.00 30.66 4.30
416 417 6.945636 TTTAAGACAAGAGTATTGGGAGGA 57.054 37.500 2.04 0.00 30.66 3.71
417 418 6.546428 TTAAGACAAGAGTATTGGGAGGAG 57.454 41.667 2.04 0.00 30.66 3.69
418 419 3.379452 AGACAAGAGTATTGGGAGGAGG 58.621 50.000 2.04 0.00 0.00 4.30
419 420 2.436173 GACAAGAGTATTGGGAGGAGGG 59.564 54.545 2.04 0.00 0.00 4.30
420 421 2.045885 ACAAGAGTATTGGGAGGAGGGA 59.954 50.000 2.04 0.00 0.00 4.20
421 422 2.703007 CAAGAGTATTGGGAGGAGGGAG 59.297 54.545 0.00 0.00 0.00 4.30
422 423 1.940957 AGAGTATTGGGAGGAGGGAGT 59.059 52.381 0.00 0.00 0.00 3.85
423 424 3.140143 AGAGTATTGGGAGGAGGGAGTA 58.860 50.000 0.00 0.00 0.00 2.59
424 425 3.735442 AGAGTATTGGGAGGAGGGAGTAT 59.265 47.826 0.00 0.00 0.00 2.12
425 426 4.926987 AGAGTATTGGGAGGAGGGAGTATA 59.073 45.833 0.00 0.00 0.00 1.47
426 427 5.378985 AGAGTATTGGGAGGAGGGAGTATAA 59.621 44.000 0.00 0.00 0.00 0.98
427 428 6.048563 AGAGTATTGGGAGGAGGGAGTATAAT 59.951 42.308 0.00 0.00 0.00 1.28
428 429 6.026186 AGTATTGGGAGGAGGGAGTATAATG 58.974 44.000 0.00 0.00 0.00 1.90
429 430 4.295905 TTGGGAGGAGGGAGTATAATGT 57.704 45.455 0.00 0.00 0.00 2.71
430 431 5.427857 TTGGGAGGAGGGAGTATAATGTA 57.572 43.478 0.00 0.00 0.00 2.29
431 432 5.427857 TGGGAGGAGGGAGTATAATGTAA 57.572 43.478 0.00 0.00 0.00 2.41
432 433 5.403512 TGGGAGGAGGGAGTATAATGTAAG 58.596 45.833 0.00 0.00 0.00 2.34
433 434 4.778427 GGGAGGAGGGAGTATAATGTAAGG 59.222 50.000 0.00 0.00 0.00 2.69
434 435 5.460720 GGGAGGAGGGAGTATAATGTAAGGA 60.461 48.000 0.00 0.00 0.00 3.36
435 436 6.265304 GGAGGAGGGAGTATAATGTAAGGAT 58.735 44.000 0.00 0.00 0.00 3.24
436 437 7.420029 GGAGGAGGGAGTATAATGTAAGGATA 58.580 42.308 0.00 0.00 0.00 2.59
437 438 7.899709 GGAGGAGGGAGTATAATGTAAGGATAA 59.100 40.741 0.00 0.00 0.00 1.75
438 439 9.322769 GAGGAGGGAGTATAATGTAAGGATAAA 57.677 37.037 0.00 0.00 0.00 1.40
439 440 9.684702 AGGAGGGAGTATAATGTAAGGATAAAA 57.315 33.333 0.00 0.00 0.00 1.52
440 441 9.945904 GGAGGGAGTATAATGTAAGGATAAAAG 57.054 37.037 0.00 0.00 0.00 2.27
453 454 9.787435 TGTAAGGATAAAAGAAACACATACAGT 57.213 29.630 0.00 0.00 0.00 3.55
464 465 8.040716 AGAAACACATACAGTAGTAATTTGGC 57.959 34.615 0.00 0.00 33.13 4.52
465 466 7.663905 AGAAACACATACAGTAGTAATTTGGCA 59.336 33.333 0.00 0.00 33.13 4.92
466 467 7.938140 AACACATACAGTAGTAATTTGGCAT 57.062 32.000 0.00 0.00 33.13 4.40
467 468 7.553881 ACACATACAGTAGTAATTTGGCATC 57.446 36.000 0.00 0.00 33.13 3.91
468 469 7.109501 ACACATACAGTAGTAATTTGGCATCA 58.890 34.615 0.00 0.00 33.13 3.07
469 470 7.280876 ACACATACAGTAGTAATTTGGCATCAG 59.719 37.037 0.00 0.00 33.13 2.90
470 471 7.280876 CACATACAGTAGTAATTTGGCATCAGT 59.719 37.037 0.00 0.00 33.13 3.41
471 472 7.495934 ACATACAGTAGTAATTTGGCATCAGTC 59.504 37.037 0.00 0.00 33.13 3.51
472 473 4.870426 ACAGTAGTAATTTGGCATCAGTCG 59.130 41.667 0.00 0.00 0.00 4.18
473 474 4.271049 CAGTAGTAATTTGGCATCAGTCGG 59.729 45.833 0.00 0.00 0.00 4.79
474 475 3.350219 AGTAATTTGGCATCAGTCGGT 57.650 42.857 0.00 0.00 0.00 4.69
475 476 3.270877 AGTAATTTGGCATCAGTCGGTC 58.729 45.455 0.00 0.00 0.00 4.79
476 477 1.086696 AATTTGGCATCAGTCGGTCG 58.913 50.000 0.00 0.00 0.00 4.79
477 478 0.744414 ATTTGGCATCAGTCGGTCGG 60.744 55.000 0.00 0.00 0.00 4.79
478 479 2.107041 TTTGGCATCAGTCGGTCGGT 62.107 55.000 0.00 0.00 0.00 4.69
479 480 2.202756 GGCATCAGTCGGTCGGTC 60.203 66.667 0.00 0.00 0.00 4.79
480 481 2.202756 GCATCAGTCGGTCGGTCC 60.203 66.667 0.00 0.00 0.00 4.46
481 482 2.494918 CATCAGTCGGTCGGTCCC 59.505 66.667 0.00 0.00 0.00 4.46
482 483 2.036731 ATCAGTCGGTCGGTCCCA 59.963 61.111 0.00 0.00 0.00 4.37
483 484 2.348888 ATCAGTCGGTCGGTCCCAC 61.349 63.158 0.00 0.00 0.00 4.61
484 485 4.415332 CAGTCGGTCGGTCCCACG 62.415 72.222 0.00 0.00 0.00 4.94
485 486 4.648626 AGTCGGTCGGTCCCACGA 62.649 66.667 0.00 0.00 41.13 4.35
486 487 3.673484 GTCGGTCGGTCCCACGAA 61.673 66.667 0.00 0.00 45.38 3.85
487 488 2.911509 TCGGTCGGTCCCACGAAA 60.912 61.111 0.00 0.00 45.38 3.46
488 489 2.431942 CGGTCGGTCCCACGAAAG 60.432 66.667 0.00 0.00 45.38 2.62
489 490 2.047560 GGTCGGTCCCACGAAAGG 60.048 66.667 0.00 0.00 45.38 3.11
490 491 2.741211 GTCGGTCCCACGAAAGGC 60.741 66.667 0.00 0.00 45.38 4.35
491 492 3.235481 TCGGTCCCACGAAAGGCA 61.235 61.111 0.00 0.00 40.34 4.75
492 493 2.742372 CGGTCCCACGAAAGGCAG 60.742 66.667 0.00 0.00 35.47 4.85
493 494 2.359975 GGTCCCACGAAAGGCAGG 60.360 66.667 0.00 0.00 0.00 4.85
494 495 2.430367 GTCCCACGAAAGGCAGGT 59.570 61.111 0.00 0.00 0.00 4.00
495 496 1.675219 GTCCCACGAAAGGCAGGTA 59.325 57.895 0.00 0.00 0.00 3.08
496 497 0.252197 GTCCCACGAAAGGCAGGTAT 59.748 55.000 0.00 0.00 0.00 2.73
497 498 0.251916 TCCCACGAAAGGCAGGTATG 59.748 55.000 0.00 0.00 0.00 2.39
498 499 0.251916 CCCACGAAAGGCAGGTATGA 59.748 55.000 0.00 0.00 0.00 2.15
499 500 1.339631 CCCACGAAAGGCAGGTATGAA 60.340 52.381 0.00 0.00 0.00 2.57
500 501 2.432444 CCACGAAAGGCAGGTATGAAA 58.568 47.619 0.00 0.00 0.00 2.69
501 502 2.161609 CCACGAAAGGCAGGTATGAAAC 59.838 50.000 0.00 0.00 0.00 2.78
502 503 2.073816 ACGAAAGGCAGGTATGAAACG 58.926 47.619 0.00 0.00 0.00 3.60
503 504 2.289195 ACGAAAGGCAGGTATGAAACGA 60.289 45.455 0.00 0.00 0.00 3.85
504 505 2.739913 CGAAAGGCAGGTATGAAACGAA 59.260 45.455 0.00 0.00 0.00 3.85
505 506 3.374058 CGAAAGGCAGGTATGAAACGAAT 59.626 43.478 0.00 0.00 0.00 3.34
506 507 4.569162 CGAAAGGCAGGTATGAAACGAATA 59.431 41.667 0.00 0.00 0.00 1.75
507 508 5.501897 CGAAAGGCAGGTATGAAACGAATAC 60.502 44.000 0.00 0.00 0.00 1.89
508 509 3.805207 AGGCAGGTATGAAACGAATACC 58.195 45.455 4.73 4.73 46.78 2.73
515 516 6.937436 GGTATGAAACGAATACCCATTTCT 57.063 37.500 0.00 0.00 42.54 2.52
517 518 8.084590 GGTATGAAACGAATACCCATTTCTAG 57.915 38.462 0.00 0.00 42.54 2.43
518 519 6.619801 ATGAAACGAATACCCATTTCTAGC 57.380 37.500 0.00 0.00 33.21 3.42
519 520 4.879545 TGAAACGAATACCCATTTCTAGCC 59.120 41.667 0.00 0.00 33.21 3.93
520 521 3.487120 ACGAATACCCATTTCTAGCCC 57.513 47.619 0.00 0.00 0.00 5.19
521 522 2.775384 ACGAATACCCATTTCTAGCCCA 59.225 45.455 0.00 0.00 0.00 5.36
522 523 3.181454 ACGAATACCCATTTCTAGCCCAG 60.181 47.826 0.00 0.00 0.00 4.45
523 524 3.756117 GAATACCCATTTCTAGCCCAGG 58.244 50.000 0.00 0.00 0.00 4.45
524 525 0.843984 TACCCATTTCTAGCCCAGGC 59.156 55.000 0.00 0.00 42.33 4.85
534 535 3.741476 GCCCAGGCTTTCTGCACG 61.741 66.667 0.08 0.00 45.15 5.34
535 536 3.741476 CCCAGGCTTTCTGCACGC 61.741 66.667 0.00 0.00 45.15 5.34
536 537 4.093952 CCAGGCTTTCTGCACGCG 62.094 66.667 3.53 3.53 45.15 6.01
537 538 4.093952 CAGGCTTTCTGCACGCGG 62.094 66.667 12.47 0.00 45.15 6.46
538 539 4.626081 AGGCTTTCTGCACGCGGT 62.626 61.111 12.47 0.00 45.15 5.68
539 540 4.389576 GGCTTTCTGCACGCGGTG 62.390 66.667 12.47 7.75 45.15 4.94
540 541 3.345808 GCTTTCTGCACGCGGTGA 61.346 61.111 12.47 0.00 42.31 4.02
541 542 2.892334 GCTTTCTGCACGCGGTGAA 61.892 57.895 12.47 6.15 42.31 3.18
542 543 1.205064 CTTTCTGCACGCGGTGAAG 59.795 57.895 12.47 10.68 40.40 3.02
543 544 1.221466 CTTTCTGCACGCGGTGAAGA 61.221 55.000 12.47 13.00 45.49 2.87
544 545 2.049156 TCTGCACGCGGTGAAGAG 60.049 61.111 12.47 4.13 42.67 2.85
545 546 2.049156 CTGCACGCGGTGAAGAGA 60.049 61.111 12.47 0.00 41.52 3.10
546 547 1.664649 CTGCACGCGGTGAAGAGAA 60.665 57.895 12.47 0.00 41.52 2.87
547 548 1.891060 CTGCACGCGGTGAAGAGAAC 61.891 60.000 12.47 0.00 41.52 3.01
548 549 1.954146 GCACGCGGTGAAGAGAACA 60.954 57.895 12.47 0.00 35.23 3.18
549 550 1.291877 GCACGCGGTGAAGAGAACAT 61.292 55.000 12.47 0.00 35.23 2.71
550 551 1.148310 CACGCGGTGAAGAGAACATT 58.852 50.000 12.47 0.00 35.23 2.71
551 552 1.531149 CACGCGGTGAAGAGAACATTT 59.469 47.619 12.47 0.00 35.23 2.32
552 553 1.798813 ACGCGGTGAAGAGAACATTTC 59.201 47.619 12.47 0.00 0.00 2.17
553 554 1.798223 CGCGGTGAAGAGAACATTTCA 59.202 47.619 0.00 0.00 0.00 2.69
554 555 2.223144 CGCGGTGAAGAGAACATTTCAA 59.777 45.455 0.00 0.00 35.29 2.69
555 556 3.303725 CGCGGTGAAGAGAACATTTCAAA 60.304 43.478 0.00 0.00 35.29 2.69
556 557 4.606961 GCGGTGAAGAGAACATTTCAAAA 58.393 39.130 0.00 0.00 35.29 2.44
557 558 5.040635 GCGGTGAAGAGAACATTTCAAAAA 58.959 37.500 0.00 0.00 35.29 1.94
602 603 7.504922 TTATGAAAGATAATTTTGTGCGTGC 57.495 32.000 0.00 0.00 0.00 5.34
603 604 3.911365 TGAAAGATAATTTTGTGCGTGCG 59.089 39.130 0.00 0.00 0.00 5.34
604 605 2.542766 AGATAATTTTGTGCGTGCGG 57.457 45.000 0.00 0.00 0.00 5.69
605 606 1.810151 AGATAATTTTGTGCGTGCGGT 59.190 42.857 0.00 0.00 0.00 5.68
606 607 1.910819 GATAATTTTGTGCGTGCGGTG 59.089 47.619 0.00 0.00 0.00 4.94
607 608 0.661780 TAATTTTGTGCGTGCGGTGC 60.662 50.000 0.00 0.00 0.00 5.01
608 609 4.896028 TTTTGTGCGTGCGGTGCG 62.896 61.111 0.00 0.00 34.24 5.34
619 620 4.458164 CGGTGCGCTCCAAATTTC 57.542 55.556 26.64 0.00 0.00 2.17
620 621 1.578926 CGGTGCGCTCCAAATTTCA 59.421 52.632 26.64 0.00 0.00 2.69
621 622 0.454957 CGGTGCGCTCCAAATTTCAG 60.455 55.000 26.64 5.42 0.00 3.02
622 623 0.881118 GGTGCGCTCCAAATTTCAGA 59.119 50.000 23.09 0.00 0.00 3.27
623 624 1.474077 GGTGCGCTCCAAATTTCAGAT 59.526 47.619 23.09 0.00 0.00 2.90
624 625 2.478539 GGTGCGCTCCAAATTTCAGATC 60.479 50.000 23.09 0.00 0.00 2.75
625 626 2.162208 GTGCGCTCCAAATTTCAGATCA 59.838 45.455 9.73 0.00 0.00 2.92
626 627 3.018856 TGCGCTCCAAATTTCAGATCAT 58.981 40.909 9.73 0.00 0.00 2.45
627 628 3.444742 TGCGCTCCAAATTTCAGATCATT 59.555 39.130 9.73 0.00 0.00 2.57
628 629 4.082081 TGCGCTCCAAATTTCAGATCATTT 60.082 37.500 9.73 0.00 0.00 2.32
629 630 4.266976 GCGCTCCAAATTTCAGATCATTTG 59.733 41.667 0.00 8.54 39.25 2.32
630 631 5.643664 CGCTCCAAATTTCAGATCATTTGA 58.356 37.500 14.61 0.00 41.18 2.69
631 632 6.094719 CGCTCCAAATTTCAGATCATTTGAA 58.905 36.000 14.61 5.10 41.18 2.69
632 633 6.034256 CGCTCCAAATTTCAGATCATTTGAAC 59.966 38.462 14.61 5.83 41.18 3.18
633 634 6.869913 GCTCCAAATTTCAGATCATTTGAACA 59.130 34.615 14.61 1.26 41.18 3.18
634 635 7.548075 GCTCCAAATTTCAGATCATTTGAACAT 59.452 33.333 14.61 3.03 41.18 2.71
643 644 8.599055 TCAGATCATTTGAACATATGAGTAGC 57.401 34.615 10.38 0.00 33.48 3.58
644 645 8.427276 TCAGATCATTTGAACATATGAGTAGCT 58.573 33.333 10.38 0.00 33.48 3.32
645 646 8.710551 CAGATCATTTGAACATATGAGTAGCTC 58.289 37.037 10.38 6.12 33.48 4.09
646 647 8.649591 AGATCATTTGAACATATGAGTAGCTCT 58.350 33.333 10.38 7.72 33.48 4.09
647 648 8.830201 ATCATTTGAACATATGAGTAGCTCTC 57.170 34.615 10.38 0.00 43.03 3.20
673 674 4.769345 AAAAAGGCAAATTGGGTCAGAA 57.231 36.364 0.00 0.00 0.00 3.02
674 675 3.751479 AAAGGCAAATTGGGTCAGAAC 57.249 42.857 0.00 0.00 0.00 3.01
675 676 2.380064 AGGCAAATTGGGTCAGAACA 57.620 45.000 0.00 0.00 0.00 3.18
676 677 2.676748 AGGCAAATTGGGTCAGAACAA 58.323 42.857 0.00 0.00 0.00 2.83
677 678 3.242011 AGGCAAATTGGGTCAGAACAAT 58.758 40.909 0.00 0.00 38.85 2.71
678 679 4.415596 AGGCAAATTGGGTCAGAACAATA 58.584 39.130 0.00 0.00 36.36 1.90
679 680 4.220602 AGGCAAATTGGGTCAGAACAATAC 59.779 41.667 0.00 0.00 36.36 1.89
680 681 4.021544 GGCAAATTGGGTCAGAACAATACA 60.022 41.667 0.00 0.00 36.36 2.29
681 682 5.337491 GGCAAATTGGGTCAGAACAATACAT 60.337 40.000 0.00 0.00 36.36 2.29
682 683 5.577945 GCAAATTGGGTCAGAACAATACATG 59.422 40.000 0.00 0.00 36.36 3.21
683 684 6.572119 GCAAATTGGGTCAGAACAATACATGA 60.572 38.462 0.00 0.00 36.36 3.07
684 685 7.377398 CAAATTGGGTCAGAACAATACATGAA 58.623 34.615 0.00 0.00 36.36 2.57
685 686 5.957842 TTGGGTCAGAACAATACATGAAC 57.042 39.130 0.00 0.00 0.00 3.18
686 687 4.979335 TGGGTCAGAACAATACATGAACA 58.021 39.130 0.00 0.00 30.81 3.18
687 688 5.380900 TGGGTCAGAACAATACATGAACAA 58.619 37.500 0.00 0.00 30.81 2.83
688 689 6.009589 TGGGTCAGAACAATACATGAACAAT 58.990 36.000 0.00 0.00 30.81 2.71
689 690 7.171653 TGGGTCAGAACAATACATGAACAATA 58.828 34.615 0.00 0.00 30.81 1.90
690 691 7.667635 TGGGTCAGAACAATACATGAACAATAA 59.332 33.333 0.00 0.00 30.81 1.40
691 692 8.519526 GGGTCAGAACAATACATGAACAATAAA 58.480 33.333 0.00 0.00 30.81 1.40
692 693 9.906660 GGTCAGAACAATACATGAACAATAAAA 57.093 29.630 0.00 0.00 29.64 1.52
715 716 7.432148 AAAAATTTCCAGACCCTAAAGTTGT 57.568 32.000 0.00 0.00 0.00 3.32
716 717 7.432148 AAAATTTCCAGACCCTAAAGTTGTT 57.568 32.000 0.00 0.00 0.00 2.83
717 718 7.432148 AAATTTCCAGACCCTAAAGTTGTTT 57.568 32.000 0.00 0.00 0.00 2.83
718 719 7.432148 AATTTCCAGACCCTAAAGTTGTTTT 57.568 32.000 0.00 0.00 0.00 2.43
719 720 6.860790 TTTCCAGACCCTAAAGTTGTTTTT 57.139 33.333 0.00 0.00 0.00 1.94
747 748 3.944055 GAGAACTGCTCAGGTGTCTAA 57.056 47.619 4.99 0.00 43.38 2.10
748 749 4.258702 GAGAACTGCTCAGGTGTCTAAA 57.741 45.455 4.99 0.00 43.38 1.85
749 750 4.826556 GAGAACTGCTCAGGTGTCTAAAT 58.173 43.478 4.99 0.00 43.38 1.40
750 751 4.573900 AGAACTGCTCAGGTGTCTAAATG 58.426 43.478 1.66 0.00 0.00 2.32
751 752 4.284490 AGAACTGCTCAGGTGTCTAAATGA 59.716 41.667 1.66 0.00 0.00 2.57
752 753 4.833478 ACTGCTCAGGTGTCTAAATGAT 57.167 40.909 1.66 0.00 0.00 2.45
753 754 4.764172 ACTGCTCAGGTGTCTAAATGATC 58.236 43.478 1.66 0.00 0.00 2.92
754 755 4.469227 ACTGCTCAGGTGTCTAAATGATCT 59.531 41.667 1.66 0.00 0.00 2.75
755 756 5.658634 ACTGCTCAGGTGTCTAAATGATCTA 59.341 40.000 1.66 0.00 0.00 1.98
756 757 6.155221 ACTGCTCAGGTGTCTAAATGATCTAA 59.845 38.462 1.66 0.00 0.00 2.10
757 758 6.946340 TGCTCAGGTGTCTAAATGATCTAAA 58.054 36.000 0.00 0.00 0.00 1.85
758 759 7.568349 TGCTCAGGTGTCTAAATGATCTAAAT 58.432 34.615 0.00 0.00 0.00 1.40
759 760 8.049117 TGCTCAGGTGTCTAAATGATCTAAATT 58.951 33.333 0.00 0.00 0.00 1.82
760 761 8.897752 GCTCAGGTGTCTAAATGATCTAAATTT 58.102 33.333 0.00 0.00 0.00 1.82
772 773 8.814038 AATGATCTAAATTTTGTAGAGCACCT 57.186 30.769 9.04 0.00 44.33 4.00
773 774 7.849804 TGATCTAAATTTTGTAGAGCACCTC 57.150 36.000 3.80 0.00 38.67 3.85
774 775 6.535150 TGATCTAAATTTTGTAGAGCACCTCG 59.465 38.462 3.80 0.00 38.67 4.63
775 776 3.831715 AAATTTTGTAGAGCACCTCGC 57.168 42.857 0.00 0.00 42.91 5.03
788 789 4.053903 GCACCTCGCGTATCAAATTATC 57.946 45.455 5.77 0.00 0.00 1.75
789 790 3.741344 GCACCTCGCGTATCAAATTATCT 59.259 43.478 5.77 0.00 0.00 1.98
790 791 4.211374 GCACCTCGCGTATCAAATTATCTT 59.789 41.667 5.77 0.00 0.00 2.40
791 792 5.612709 GCACCTCGCGTATCAAATTATCTTC 60.613 44.000 5.77 0.00 0.00 2.87
792 793 4.989168 ACCTCGCGTATCAAATTATCTTCC 59.011 41.667 5.77 0.00 0.00 3.46
793 794 4.090066 CCTCGCGTATCAAATTATCTTCCG 59.910 45.833 5.77 0.00 0.00 4.30
794 795 4.613944 TCGCGTATCAAATTATCTTCCGT 58.386 39.130 5.77 0.00 0.00 4.69
795 796 4.443063 TCGCGTATCAAATTATCTTCCGTG 59.557 41.667 5.77 0.00 0.00 4.94
796 797 4.455124 GCGTATCAAATTATCTTCCGTGC 58.545 43.478 0.00 0.00 0.00 5.34
797 798 4.025229 GCGTATCAAATTATCTTCCGTGCA 60.025 41.667 0.00 0.00 0.00 4.57
798 799 5.503357 GCGTATCAAATTATCTTCCGTGCAA 60.503 40.000 0.00 0.00 0.00 4.08
799 800 6.482835 CGTATCAAATTATCTTCCGTGCAAA 58.517 36.000 0.00 0.00 0.00 3.68
800 801 6.964370 CGTATCAAATTATCTTCCGTGCAAAA 59.036 34.615 0.00 0.00 0.00 2.44
801 802 7.164171 CGTATCAAATTATCTTCCGTGCAAAAG 59.836 37.037 0.00 0.00 0.00 2.27
802 803 5.708948 TCAAATTATCTTCCGTGCAAAAGG 58.291 37.500 0.00 0.00 0.00 3.11
803 804 5.475220 TCAAATTATCTTCCGTGCAAAAGGA 59.525 36.000 3.01 3.01 34.19 3.36
804 805 5.975693 AATTATCTTCCGTGCAAAAGGAA 57.024 34.783 15.84 15.84 43.57 3.36
805 806 5.975693 ATTATCTTCCGTGCAAAAGGAAA 57.024 34.783 16.95 10.56 44.89 3.13
806 807 5.975693 TTATCTTCCGTGCAAAAGGAAAT 57.024 34.783 16.95 14.92 44.89 2.17
807 808 3.915437 TCTTCCGTGCAAAAGGAAATC 57.085 42.857 16.95 0.00 44.89 2.17
808 809 3.218453 TCTTCCGTGCAAAAGGAAATCA 58.782 40.909 16.95 5.38 44.89 2.57
809 810 3.253188 TCTTCCGTGCAAAAGGAAATCAG 59.747 43.478 16.95 8.41 44.89 2.90
810 811 2.857483 TCCGTGCAAAAGGAAATCAGA 58.143 42.857 4.54 0.00 32.86 3.27
811 812 3.218453 TCCGTGCAAAAGGAAATCAGAA 58.782 40.909 4.54 0.00 32.86 3.02
812 813 3.826157 TCCGTGCAAAAGGAAATCAGAAT 59.174 39.130 4.54 0.00 32.86 2.40
813 814 4.280677 TCCGTGCAAAAGGAAATCAGAATT 59.719 37.500 4.54 0.00 32.86 2.17
814 815 4.990426 CCGTGCAAAAGGAAATCAGAATTT 59.010 37.500 0.00 0.00 37.80 1.82
815 816 5.466393 CCGTGCAAAAGGAAATCAGAATTTT 59.534 36.000 0.00 0.00 35.21 1.82
816 817 6.018016 CCGTGCAAAAGGAAATCAGAATTTTT 60.018 34.615 0.00 0.00 35.21 1.94
856 857 6.991485 TCTTTTTGAATTTCTGTTCATCGC 57.009 33.333 0.00 0.00 37.88 4.58
857 858 5.624900 TCTTTTTGAATTTCTGTTCATCGCG 59.375 36.000 0.00 0.00 37.88 5.87
858 859 3.469899 TTGAATTTCTGTTCATCGCGG 57.530 42.857 6.13 0.00 37.88 6.46
859 860 1.130373 TGAATTTCTGTTCATCGCGGC 59.870 47.619 6.13 0.00 33.41 6.53
860 861 1.398390 GAATTTCTGTTCATCGCGGCT 59.602 47.619 6.13 0.00 0.00 5.52
861 862 0.729116 ATTTCTGTTCATCGCGGCTG 59.271 50.000 6.13 4.57 0.00 4.85
862 863 0.320334 TTTCTGTTCATCGCGGCTGA 60.320 50.000 6.13 7.28 0.00 4.26
863 864 0.737367 TTCTGTTCATCGCGGCTGAG 60.737 55.000 6.13 0.00 0.00 3.35
864 865 1.153765 CTGTTCATCGCGGCTGAGA 60.154 57.895 6.13 0.00 0.00 3.27
865 866 1.416813 CTGTTCATCGCGGCTGAGAC 61.417 60.000 6.13 10.98 0.00 3.36
866 867 1.153745 GTTCATCGCGGCTGAGACT 60.154 57.895 6.13 0.00 0.00 3.24
867 868 1.153765 TTCATCGCGGCTGAGACTG 60.154 57.895 6.13 1.98 0.00 3.51
868 869 1.595093 TTCATCGCGGCTGAGACTGA 61.595 55.000 6.13 4.38 0.00 3.41
869 870 1.588403 CATCGCGGCTGAGACTGAG 60.588 63.158 6.13 0.00 0.00 3.35
870 871 3.423162 ATCGCGGCTGAGACTGAGC 62.423 63.158 6.13 5.20 35.57 4.26
871 872 4.426112 CGCGGCTGAGACTGAGCA 62.426 66.667 16.06 0.00 38.27 4.26
872 873 2.813042 GCGGCTGAGACTGAGCAC 60.813 66.667 16.06 3.42 38.27 4.40
873 874 2.125753 CGGCTGAGACTGAGCACC 60.126 66.667 16.06 0.00 38.27 5.01
874 875 2.125753 GGCTGAGACTGAGCACCG 60.126 66.667 16.06 0.00 38.27 4.94
875 876 2.640302 GGCTGAGACTGAGCACCGA 61.640 63.158 16.06 0.00 38.27 4.69
876 877 1.290324 GCTGAGACTGAGCACCGAA 59.710 57.895 9.23 0.00 36.40 4.30
877 878 0.108424 GCTGAGACTGAGCACCGAAT 60.108 55.000 9.23 0.00 36.40 3.34
878 879 1.919918 CTGAGACTGAGCACCGAATC 58.080 55.000 0.00 0.00 0.00 2.52
879 880 0.171231 TGAGACTGAGCACCGAATCG 59.829 55.000 0.00 0.00 0.00 3.34
880 881 1.142778 GAGACTGAGCACCGAATCGC 61.143 60.000 0.00 0.00 0.00 4.58
881 882 2.125512 ACTGAGCACCGAATCGCC 60.126 61.111 0.00 0.00 0.00 5.54
882 883 2.185350 CTGAGCACCGAATCGCCT 59.815 61.111 0.00 0.00 0.00 5.52
883 884 1.880340 CTGAGCACCGAATCGCCTC 60.880 63.158 0.00 3.34 0.00 4.70
889 890 4.925576 CCGAATCGCCTCGTCCGG 62.926 72.222 0.00 0.00 37.11 5.14
893 894 0.877071 GAATCGCCTCGTCCGGTATA 59.123 55.000 0.00 0.00 0.00 1.47
906 908 7.493645 CCTCGTCCGGTATAAAATTTAAGTCTT 59.506 37.037 0.00 0.00 0.00 3.01
925 927 1.865788 TTCTTGTGCGCTGCATTCCC 61.866 55.000 9.73 0.00 41.91 3.97
927 929 4.657408 TGTGCGCTGCATTCCCCA 62.657 61.111 9.73 0.00 41.91 4.96
951 953 6.010850 AGGGGAAAATAGAGAAAAGAACACC 58.989 40.000 0.00 0.00 0.00 4.16
959 961 1.153127 AAAAGAACACCACGCCGGA 60.153 52.632 5.05 0.00 38.63 5.14
963 965 1.964373 GAACACCACGCCGGAACAT 60.964 57.895 5.05 0.00 38.63 2.71
1626 1628 3.340814 CCTGATGGGATATGCTACACC 57.659 52.381 0.00 0.00 37.23 4.16
1763 1765 0.247736 ACAGCGCTAGGGAACTTGAG 59.752 55.000 10.99 0.00 43.67 3.02
1830 1832 3.191371 GTGGTCTTTGTGGGAATGTGATC 59.809 47.826 0.00 0.00 0.00 2.92
2349 2351 5.350914 CAGTTTCATTGGTGTTCTTTTTGCA 59.649 36.000 0.00 0.00 0.00 4.08
2430 2432 2.763710 GGCATTGCCCCCGGAATT 60.764 61.111 17.28 0.00 44.06 2.17
2868 2870 7.380602 CCTTAACATTTTCTGTCTCTGCTTTTG 59.619 37.037 0.00 0.00 36.98 2.44
2869 2871 5.841957 ACATTTTCTGTCTCTGCTTTTGT 57.158 34.783 0.00 0.00 29.94 2.83
2870 2872 6.212888 ACATTTTCTGTCTCTGCTTTTGTT 57.787 33.333 0.00 0.00 29.94 2.83
2871 2873 6.038356 ACATTTTCTGTCTCTGCTTTTGTTG 58.962 36.000 0.00 0.00 29.94 3.33
3128 3134 1.076485 GCAGGCTTGGATGGGATGT 60.076 57.895 0.00 0.00 0.00 3.06
3129 3135 1.389609 GCAGGCTTGGATGGGATGTG 61.390 60.000 0.00 0.00 0.00 3.21
3151 3157 2.423538 GCCTTAGCCACCATTAACACAG 59.576 50.000 0.00 0.00 0.00 3.66
3199 3205 8.726988 TGTCTACTTATTGGCTTCATTTGTAAC 58.273 33.333 0.00 0.00 0.00 2.50
3343 3349 5.598417 TGCTATACTAATCCAACTGCAGAGA 59.402 40.000 23.35 14.25 0.00 3.10
3516 3524 3.547813 CGCAGTTGTACAGTTTGATGCAA 60.548 43.478 0.00 0.00 32.79 4.08
3635 3666 7.827819 TGTCACAAGTAGTAATGATTAGCAC 57.172 36.000 0.00 0.00 0.00 4.40
3749 3782 8.503196 CGCCATTTTAGTGAATATATACAAGCA 58.497 33.333 0.00 0.00 0.00 3.91
3808 3844 9.686683 AAAGTGTTAAGCCTTAGACAATGATAT 57.313 29.630 0.00 0.00 0.00 1.63
3839 3875 4.272489 GCATATGGCCCTATGCTAAATCA 58.728 43.478 33.50 0.00 46.78 2.57
3840 3876 4.096984 GCATATGGCCCTATGCTAAATCAC 59.903 45.833 33.50 12.13 46.78 3.06
3841 3877 3.882102 ATGGCCCTATGCTAAATCACA 57.118 42.857 0.00 0.00 40.92 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.676632 TCAAAATAGAGAGGGGGTGAAGAATA 59.323 38.462 0.00 0.00 0.00 1.75
1 2 5.492524 TCAAAATAGAGAGGGGGTGAAGAAT 59.507 40.000 0.00 0.00 0.00 2.40
2 3 4.849810 TCAAAATAGAGAGGGGGTGAAGAA 59.150 41.667 0.00 0.00 0.00 2.52
3 4 4.435137 TCAAAATAGAGAGGGGGTGAAGA 58.565 43.478 0.00 0.00 0.00 2.87
4 5 4.384647 CCTCAAAATAGAGAGGGGGTGAAG 60.385 50.000 0.00 0.00 46.11 3.02
5 6 3.523564 CCTCAAAATAGAGAGGGGGTGAA 59.476 47.826 0.00 0.00 46.11 3.18
6 7 3.115390 CCTCAAAATAGAGAGGGGGTGA 58.885 50.000 0.00 0.00 46.11 4.02
7 8 3.567478 CCTCAAAATAGAGAGGGGGTG 57.433 52.381 0.00 0.00 46.11 4.61
13 14 6.036517 CGGTGAATTGACCTCAAAATAGAGAG 59.963 42.308 12.50 0.00 39.55 3.20
14 15 5.874810 CGGTGAATTGACCTCAAAATAGAGA 59.125 40.000 12.50 0.00 39.55 3.10
15 16 5.643777 ACGGTGAATTGACCTCAAAATAGAG 59.356 40.000 12.50 0.00 39.55 2.43
16 17 5.556915 ACGGTGAATTGACCTCAAAATAGA 58.443 37.500 12.50 0.00 39.55 1.98
17 18 5.880054 ACGGTGAATTGACCTCAAAATAG 57.120 39.130 12.50 0.00 39.55 1.73
18 19 7.931578 AATACGGTGAATTGACCTCAAAATA 57.068 32.000 12.50 0.00 39.55 1.40
19 20 6.834168 AATACGGTGAATTGACCTCAAAAT 57.166 33.333 12.50 0.00 39.55 1.82
20 21 6.642707 AAATACGGTGAATTGACCTCAAAA 57.357 33.333 12.50 0.00 39.55 2.44
21 22 6.642707 AAAATACGGTGAATTGACCTCAAA 57.357 33.333 12.50 0.00 39.55 2.69
22 23 6.642707 AAAAATACGGTGAATTGACCTCAA 57.357 33.333 12.50 0.00 40.51 3.02
23 24 6.373216 CCTAAAAATACGGTGAATTGACCTCA 59.627 38.462 12.50 0.00 33.35 3.86
24 25 6.373495 ACCTAAAAATACGGTGAATTGACCTC 59.627 38.462 12.50 0.00 33.35 3.85
25 26 6.243148 ACCTAAAAATACGGTGAATTGACCT 58.757 36.000 12.50 2.29 33.35 3.85
26 27 6.505044 ACCTAAAAATACGGTGAATTGACC 57.495 37.500 3.64 3.64 0.00 4.02
27 28 7.269724 CGAAACCTAAAAATACGGTGAATTGAC 59.730 37.037 0.00 0.00 0.00 3.18
28 29 7.041235 ACGAAACCTAAAAATACGGTGAATTGA 60.041 33.333 0.00 0.00 0.00 2.57
29 30 7.079475 ACGAAACCTAAAAATACGGTGAATTG 58.921 34.615 0.00 0.00 0.00 2.32
30 31 7.205737 ACGAAACCTAAAAATACGGTGAATT 57.794 32.000 0.00 0.00 0.00 2.17
31 32 6.806388 ACGAAACCTAAAAATACGGTGAAT 57.194 33.333 0.00 0.00 0.00 2.57
32 33 7.721286 TTACGAAACCTAAAAATACGGTGAA 57.279 32.000 0.00 0.00 0.00 3.18
33 34 7.721286 TTTACGAAACCTAAAAATACGGTGA 57.279 32.000 0.00 0.00 0.00 4.02
34 35 8.953507 AATTTACGAAACCTAAAAATACGGTG 57.046 30.769 0.00 0.00 0.00 4.94
35 36 9.964303 AAAATTTACGAAACCTAAAAATACGGT 57.036 25.926 0.00 0.00 0.00 4.83
46 47 8.573035 TGCAATAAGAGAAAATTTACGAAACCT 58.427 29.630 0.00 0.00 0.00 3.50
47 48 8.736751 TGCAATAAGAGAAAATTTACGAAACC 57.263 30.769 0.00 0.00 0.00 3.27
50 51 9.697250 CGTATGCAATAAGAGAAAATTTACGAA 57.303 29.630 0.00 0.00 29.18 3.85
51 52 8.875803 ACGTATGCAATAAGAGAAAATTTACGA 58.124 29.630 12.13 0.00 32.39 3.43
60 61 9.647797 TCTCTTTTTACGTATGCAATAAGAGAA 57.352 29.630 20.04 9.99 41.59 2.87
61 62 9.647797 TTCTCTTTTTACGTATGCAATAAGAGA 57.352 29.630 19.10 19.10 42.21 3.10
62 63 9.690434 GTTCTCTTTTTACGTATGCAATAAGAG 57.310 33.333 16.29 16.29 39.33 2.85
63 64 9.210329 TGTTCTCTTTTTACGTATGCAATAAGA 57.790 29.630 0.00 0.00 32.39 2.10
64 65 9.988350 ATGTTCTCTTTTTACGTATGCAATAAG 57.012 29.630 0.00 0.00 34.31 1.73
67 68 9.988350 CTTATGTTCTCTTTTTACGTATGCAAT 57.012 29.630 0.00 0.00 0.00 3.56
68 69 9.210329 TCTTATGTTCTCTTTTTACGTATGCAA 57.790 29.630 0.00 0.00 0.00 4.08
69 70 8.766000 TCTTATGTTCTCTTTTTACGTATGCA 57.234 30.769 0.00 0.00 0.00 3.96
84 85 9.355215 CGGCGAGTATATATTTTCTTATGTTCT 57.645 33.333 0.00 0.00 0.00 3.01
85 86 9.136952 ACGGCGAGTATATATTTTCTTATGTTC 57.863 33.333 16.62 0.00 0.00 3.18
130 131 9.842444 GTATGTTTTTACGTTCGTAACTTTACA 57.158 29.630 15.70 15.63 33.28 2.41
131 132 9.842444 TGTATGTTTTTACGTTCGTAACTTTAC 57.158 29.630 15.70 13.00 31.32 2.01
139 140 8.842777 GCATTTTATGTATGTTTTTACGTTCGT 58.157 29.630 0.00 2.91 0.00 3.85
140 141 8.034172 CGCATTTTATGTATGTTTTTACGTTCG 58.966 33.333 0.00 0.00 0.00 3.95
141 142 9.053135 TCGCATTTTATGTATGTTTTTACGTTC 57.947 29.630 0.00 0.00 0.00 3.95
142 143 8.951954 TCGCATTTTATGTATGTTTTTACGTT 57.048 26.923 0.00 0.00 0.00 3.99
150 151 9.897744 CCAGAAATATCGCATTTTATGTATGTT 57.102 29.630 0.00 0.00 0.00 2.71
151 152 9.066892 ACCAGAAATATCGCATTTTATGTATGT 57.933 29.630 0.00 0.00 0.00 2.29
152 153 9.546909 GACCAGAAATATCGCATTTTATGTATG 57.453 33.333 0.00 0.00 0.00 2.39
153 154 9.507329 AGACCAGAAATATCGCATTTTATGTAT 57.493 29.630 0.00 0.00 0.00 2.29
154 155 8.902540 AGACCAGAAATATCGCATTTTATGTA 57.097 30.769 0.00 0.00 0.00 2.29
155 156 7.807977 AGACCAGAAATATCGCATTTTATGT 57.192 32.000 0.00 0.00 0.00 2.29
160 161 8.784043 GGTTATAAGACCAGAAATATCGCATTT 58.216 33.333 0.00 0.00 39.57 2.32
161 162 8.157476 AGGTTATAAGACCAGAAATATCGCATT 58.843 33.333 0.00 0.00 42.35 3.56
162 163 7.680730 AGGTTATAAGACCAGAAATATCGCAT 58.319 34.615 0.00 0.00 42.35 4.73
163 164 7.062749 AGGTTATAAGACCAGAAATATCGCA 57.937 36.000 0.00 0.00 42.35 5.10
164 165 9.654663 AATAGGTTATAAGACCAGAAATATCGC 57.345 33.333 0.00 0.00 42.35 4.58
248 249 9.744468 GCTCCATAAATAAATTACGTTTGGAAT 57.256 29.630 0.00 0.00 31.65 3.01
249 250 7.911205 CGCTCCATAAATAAATTACGTTTGGAA 59.089 33.333 0.00 0.00 31.65 3.53
250 251 7.280428 TCGCTCCATAAATAAATTACGTTTGGA 59.720 33.333 0.00 0.00 31.35 3.53
251 252 7.411274 TCGCTCCATAAATAAATTACGTTTGG 58.589 34.615 0.00 0.00 0.00 3.28
252 253 9.103048 GATCGCTCCATAAATAAATTACGTTTG 57.897 33.333 0.00 0.00 0.00 2.93
253 254 8.007716 CGATCGCTCCATAAATAAATTACGTTT 58.992 33.333 0.26 0.00 0.00 3.60
254 255 7.170320 ACGATCGCTCCATAAATAAATTACGTT 59.830 33.333 16.60 0.00 0.00 3.99
255 256 6.643770 ACGATCGCTCCATAAATAAATTACGT 59.356 34.615 16.60 0.00 0.00 3.57
256 257 7.045725 ACGATCGCTCCATAAATAAATTACG 57.954 36.000 16.60 0.00 0.00 3.18
257 258 9.953825 CTTACGATCGCTCCATAAATAAATTAC 57.046 33.333 16.60 0.00 0.00 1.89
258 259 9.917129 TCTTACGATCGCTCCATAAATAAATTA 57.083 29.630 16.60 0.00 0.00 1.40
259 260 8.827177 TCTTACGATCGCTCCATAAATAAATT 57.173 30.769 16.60 0.00 0.00 1.82
260 261 9.436957 AATCTTACGATCGCTCCATAAATAAAT 57.563 29.630 16.60 0.00 0.00 1.40
261 262 8.827177 AATCTTACGATCGCTCCATAAATAAA 57.173 30.769 16.60 0.00 0.00 1.40
262 263 9.350357 GTAATCTTACGATCGCTCCATAAATAA 57.650 33.333 16.60 2.01 0.00 1.40
263 264 7.972277 GGTAATCTTACGATCGCTCCATAAATA 59.028 37.037 16.60 0.00 34.50 1.40
264 265 6.812160 GGTAATCTTACGATCGCTCCATAAAT 59.188 38.462 16.60 0.00 34.50 1.40
265 266 6.015688 AGGTAATCTTACGATCGCTCCATAAA 60.016 38.462 16.60 0.00 34.50 1.40
266 267 5.475909 AGGTAATCTTACGATCGCTCCATAA 59.524 40.000 16.60 4.99 34.50 1.90
267 268 5.008331 AGGTAATCTTACGATCGCTCCATA 58.992 41.667 16.60 0.00 34.50 2.74
268 269 3.827302 AGGTAATCTTACGATCGCTCCAT 59.173 43.478 16.60 0.00 34.50 3.41
269 270 3.220110 AGGTAATCTTACGATCGCTCCA 58.780 45.455 16.60 0.00 34.50 3.86
270 271 3.667430 CGAGGTAATCTTACGATCGCTCC 60.667 52.174 16.60 6.24 37.02 4.70
271 272 3.480894 CGAGGTAATCTTACGATCGCTC 58.519 50.000 16.60 9.11 37.02 5.03
272 273 2.225963 CCGAGGTAATCTTACGATCGCT 59.774 50.000 16.60 5.20 39.81 4.93
273 274 2.582687 CCGAGGTAATCTTACGATCGC 58.417 52.381 16.60 0.00 39.81 4.58
274 275 2.551459 ACCCGAGGTAATCTTACGATCG 59.449 50.000 14.88 14.88 40.33 3.69
275 276 3.567164 TCACCCGAGGTAATCTTACGATC 59.433 47.826 0.00 0.00 32.11 3.69
276 277 3.559069 TCACCCGAGGTAATCTTACGAT 58.441 45.455 0.00 0.00 32.11 3.73
277 278 3.003394 TCACCCGAGGTAATCTTACGA 57.997 47.619 0.00 0.00 32.11 3.43
278 279 3.379372 TCTTCACCCGAGGTAATCTTACG 59.621 47.826 0.00 0.00 32.11 3.18
279 280 4.996788 TCTTCACCCGAGGTAATCTTAC 57.003 45.455 0.00 0.00 32.11 2.34
280 281 6.555463 AATTCTTCACCCGAGGTAATCTTA 57.445 37.500 0.00 0.00 32.11 2.10
281 282 5.437191 AATTCTTCACCCGAGGTAATCTT 57.563 39.130 0.00 0.00 32.11 2.40
282 283 6.749036 ATAATTCTTCACCCGAGGTAATCT 57.251 37.500 0.00 0.00 32.11 2.40
283 284 7.803279 AAATAATTCTTCACCCGAGGTAATC 57.197 36.000 0.00 0.00 32.11 1.75
284 285 9.862149 AATAAATAATTCTTCACCCGAGGTAAT 57.138 29.630 0.00 0.00 32.11 1.89
285 286 9.333724 GAATAAATAATTCTTCACCCGAGGTAA 57.666 33.333 0.00 0.00 40.82 2.85
286 287 8.897872 GAATAAATAATTCTTCACCCGAGGTA 57.102 34.615 0.00 0.00 40.82 3.08
287 288 7.803279 GAATAAATAATTCTTCACCCGAGGT 57.197 36.000 0.00 0.00 40.82 3.85
299 300 6.980397 CACCCAGGTTGCAGAATAAATAATTC 59.020 38.462 0.00 0.00 43.81 2.17
300 301 6.667414 TCACCCAGGTTGCAGAATAAATAATT 59.333 34.615 0.00 0.00 0.00 1.40
301 302 6.194235 TCACCCAGGTTGCAGAATAAATAAT 58.806 36.000 0.00 0.00 0.00 1.28
302 303 5.575157 TCACCCAGGTTGCAGAATAAATAA 58.425 37.500 0.00 0.00 0.00 1.40
303 304 5.186256 TCACCCAGGTTGCAGAATAAATA 57.814 39.130 0.00 0.00 0.00 1.40
304 305 4.046286 TCACCCAGGTTGCAGAATAAAT 57.954 40.909 0.00 0.00 0.00 1.40
305 306 3.517296 TCACCCAGGTTGCAGAATAAA 57.483 42.857 0.00 0.00 0.00 1.40
306 307 3.010027 TCATCACCCAGGTTGCAGAATAA 59.990 43.478 0.00 0.00 0.00 1.40
307 308 2.575735 TCATCACCCAGGTTGCAGAATA 59.424 45.455 0.00 0.00 0.00 1.75
308 309 1.355381 TCATCACCCAGGTTGCAGAAT 59.645 47.619 0.00 0.00 0.00 2.40
309 310 0.770499 TCATCACCCAGGTTGCAGAA 59.230 50.000 0.00 0.00 0.00 3.02
310 311 0.770499 TTCATCACCCAGGTTGCAGA 59.230 50.000 0.00 0.00 0.00 4.26
311 312 1.843368 ATTCATCACCCAGGTTGCAG 58.157 50.000 0.00 0.00 0.00 4.41
312 313 2.308570 ACTATTCATCACCCAGGTTGCA 59.691 45.455 0.00 0.00 0.00 4.08
313 314 3.004752 ACTATTCATCACCCAGGTTGC 57.995 47.619 0.00 0.00 0.00 4.17
314 315 7.509546 AGTAATACTATTCATCACCCAGGTTG 58.490 38.462 0.00 0.00 0.00 3.77
315 316 7.691993 AGTAATACTATTCATCACCCAGGTT 57.308 36.000 0.00 0.00 0.00 3.50
316 317 8.974292 ATAGTAATACTATTCATCACCCAGGT 57.026 34.615 7.10 0.00 38.17 4.00
386 387 8.576442 CCCAATACTCTTGTCTTAAATTTGTGT 58.424 33.333 0.00 0.00 0.00 3.72
387 388 8.792633 TCCCAATACTCTTGTCTTAAATTTGTG 58.207 33.333 0.00 0.00 0.00 3.33
388 389 8.934023 TCCCAATACTCTTGTCTTAAATTTGT 57.066 30.769 0.00 0.00 0.00 2.83
389 390 8.462016 CCTCCCAATACTCTTGTCTTAAATTTG 58.538 37.037 0.00 0.00 0.00 2.32
390 391 8.390921 TCCTCCCAATACTCTTGTCTTAAATTT 58.609 33.333 0.00 0.00 0.00 1.82
391 392 7.928873 TCCTCCCAATACTCTTGTCTTAAATT 58.071 34.615 0.00 0.00 0.00 1.82
392 393 7.366011 CCTCCTCCCAATACTCTTGTCTTAAAT 60.366 40.741 0.00 0.00 0.00 1.40
393 394 6.070194 CCTCCTCCCAATACTCTTGTCTTAAA 60.070 42.308 0.00 0.00 0.00 1.52
394 395 5.425539 CCTCCTCCCAATACTCTTGTCTTAA 59.574 44.000 0.00 0.00 0.00 1.85
395 396 4.962995 CCTCCTCCCAATACTCTTGTCTTA 59.037 45.833 0.00 0.00 0.00 2.10
396 397 3.777522 CCTCCTCCCAATACTCTTGTCTT 59.222 47.826 0.00 0.00 0.00 3.01
397 398 3.379452 CCTCCTCCCAATACTCTTGTCT 58.621 50.000 0.00 0.00 0.00 3.41
398 399 2.436173 CCCTCCTCCCAATACTCTTGTC 59.564 54.545 0.00 0.00 0.00 3.18
399 400 2.045885 TCCCTCCTCCCAATACTCTTGT 59.954 50.000 0.00 0.00 0.00 3.16
400 401 2.703007 CTCCCTCCTCCCAATACTCTTG 59.297 54.545 0.00 0.00 0.00 3.02
401 402 2.319438 ACTCCCTCCTCCCAATACTCTT 59.681 50.000 0.00 0.00 0.00 2.85
402 403 1.940957 ACTCCCTCCTCCCAATACTCT 59.059 52.381 0.00 0.00 0.00 3.24
403 404 2.480642 ACTCCCTCCTCCCAATACTC 57.519 55.000 0.00 0.00 0.00 2.59
404 405 5.698369 TTATACTCCCTCCTCCCAATACT 57.302 43.478 0.00 0.00 0.00 2.12
405 406 5.785940 ACATTATACTCCCTCCTCCCAATAC 59.214 44.000 0.00 0.00 0.00 1.89
406 407 5.989717 ACATTATACTCCCTCCTCCCAATA 58.010 41.667 0.00 0.00 0.00 1.90
407 408 4.844348 ACATTATACTCCCTCCTCCCAAT 58.156 43.478 0.00 0.00 0.00 3.16
408 409 4.295905 ACATTATACTCCCTCCTCCCAA 57.704 45.455 0.00 0.00 0.00 4.12
409 410 5.403512 CTTACATTATACTCCCTCCTCCCA 58.596 45.833 0.00 0.00 0.00 4.37
410 411 4.778427 CCTTACATTATACTCCCTCCTCCC 59.222 50.000 0.00 0.00 0.00 4.30
411 412 5.652324 TCCTTACATTATACTCCCTCCTCC 58.348 45.833 0.00 0.00 0.00 4.30
412 413 8.896722 TTATCCTTACATTATACTCCCTCCTC 57.103 38.462 0.00 0.00 0.00 3.71
413 414 9.684702 TTTTATCCTTACATTATACTCCCTCCT 57.315 33.333 0.00 0.00 0.00 3.69
414 415 9.945904 CTTTTATCCTTACATTATACTCCCTCC 57.054 37.037 0.00 0.00 0.00 4.30
427 428 9.787435 ACTGTATGTGTTTCTTTTATCCTTACA 57.213 29.630 0.00 0.00 0.00 2.41
438 439 8.512138 GCCAAATTACTACTGTATGTGTTTCTT 58.488 33.333 0.00 0.00 0.00 2.52
439 440 7.663905 TGCCAAATTACTACTGTATGTGTTTCT 59.336 33.333 0.00 0.00 0.00 2.52
440 441 7.812648 TGCCAAATTACTACTGTATGTGTTTC 58.187 34.615 0.00 0.00 0.00 2.78
441 442 7.753309 TGCCAAATTACTACTGTATGTGTTT 57.247 32.000 0.00 0.00 0.00 2.83
442 443 7.609918 TGATGCCAAATTACTACTGTATGTGTT 59.390 33.333 0.00 0.00 0.00 3.32
443 444 7.109501 TGATGCCAAATTACTACTGTATGTGT 58.890 34.615 0.00 0.00 0.00 3.72
444 445 7.280876 ACTGATGCCAAATTACTACTGTATGTG 59.719 37.037 0.00 0.00 0.00 3.21
445 446 7.338710 ACTGATGCCAAATTACTACTGTATGT 58.661 34.615 0.00 0.00 0.00 2.29
446 447 7.306807 CGACTGATGCCAAATTACTACTGTATG 60.307 40.741 0.00 0.00 0.00 2.39
447 448 6.701841 CGACTGATGCCAAATTACTACTGTAT 59.298 38.462 0.00 0.00 0.00 2.29
448 449 6.040247 CGACTGATGCCAAATTACTACTGTA 58.960 40.000 0.00 0.00 0.00 2.74
449 450 4.870426 CGACTGATGCCAAATTACTACTGT 59.130 41.667 0.00 0.00 0.00 3.55
450 451 4.271049 CCGACTGATGCCAAATTACTACTG 59.729 45.833 0.00 0.00 0.00 2.74
451 452 4.081087 ACCGACTGATGCCAAATTACTACT 60.081 41.667 0.00 0.00 0.00 2.57
452 453 4.189231 ACCGACTGATGCCAAATTACTAC 58.811 43.478 0.00 0.00 0.00 2.73
453 454 4.439057 GACCGACTGATGCCAAATTACTA 58.561 43.478 0.00 0.00 0.00 1.82
454 455 3.270877 GACCGACTGATGCCAAATTACT 58.729 45.455 0.00 0.00 0.00 2.24
455 456 2.030457 CGACCGACTGATGCCAAATTAC 59.970 50.000 0.00 0.00 0.00 1.89
456 457 2.276201 CGACCGACTGATGCCAAATTA 58.724 47.619 0.00 0.00 0.00 1.40
457 458 1.086696 CGACCGACTGATGCCAAATT 58.913 50.000 0.00 0.00 0.00 1.82
458 459 0.744414 CCGACCGACTGATGCCAAAT 60.744 55.000 0.00 0.00 0.00 2.32
459 460 1.375396 CCGACCGACTGATGCCAAA 60.375 57.895 0.00 0.00 0.00 3.28
460 461 2.264480 CCGACCGACTGATGCCAA 59.736 61.111 0.00 0.00 0.00 4.52
461 462 2.994995 ACCGACCGACTGATGCCA 60.995 61.111 0.00 0.00 0.00 4.92
462 463 2.202756 GACCGACCGACTGATGCC 60.203 66.667 0.00 0.00 0.00 4.40
463 464 2.202756 GGACCGACCGACTGATGC 60.203 66.667 0.00 0.00 0.00 3.91
464 465 2.348104 TGGGACCGACCGACTGATG 61.348 63.158 0.00 0.00 40.11 3.07
465 466 2.036731 TGGGACCGACCGACTGAT 59.963 61.111 0.00 0.00 40.11 2.90
466 467 2.987547 GTGGGACCGACCGACTGA 60.988 66.667 0.00 0.00 42.78 3.41
467 468 4.415332 CGTGGGACCGACCGACTG 62.415 72.222 0.45 3.26 43.68 3.51
468 469 4.648626 TCGTGGGACCGACCGACT 62.649 66.667 0.45 0.00 43.68 4.18
469 470 3.211564 TTTCGTGGGACCGACCGAC 62.212 63.158 0.45 4.33 42.68 4.79
470 471 2.911509 TTTCGTGGGACCGACCGA 60.912 61.111 0.45 0.00 40.11 4.69
471 472 2.431942 CTTTCGTGGGACCGACCG 60.432 66.667 0.45 0.00 40.11 4.79
472 473 2.047560 CCTTTCGTGGGACCGACC 60.048 66.667 0.45 0.00 36.42 4.79
473 474 2.741211 GCCTTTCGTGGGACCGAC 60.741 66.667 0.00 0.00 36.42 4.79
474 475 3.234630 CTGCCTTTCGTGGGACCGA 62.235 63.158 0.00 0.00 34.52 4.69
475 476 2.742372 CTGCCTTTCGTGGGACCG 60.742 66.667 0.00 0.00 0.00 4.79
476 477 1.833787 TACCTGCCTTTCGTGGGACC 61.834 60.000 0.00 0.00 0.00 4.46
477 478 0.252197 ATACCTGCCTTTCGTGGGAC 59.748 55.000 0.00 0.00 0.00 4.46
478 479 0.251916 CATACCTGCCTTTCGTGGGA 59.748 55.000 0.00 0.00 0.00 4.37
479 480 0.251916 TCATACCTGCCTTTCGTGGG 59.748 55.000 0.00 0.00 0.00 4.61
480 481 2.107950 TTCATACCTGCCTTTCGTGG 57.892 50.000 0.00 0.00 0.00 4.94
481 482 2.159707 CGTTTCATACCTGCCTTTCGTG 60.160 50.000 0.00 0.00 0.00 4.35
482 483 2.073816 CGTTTCATACCTGCCTTTCGT 58.926 47.619 0.00 0.00 0.00 3.85
483 484 2.343101 TCGTTTCATACCTGCCTTTCG 58.657 47.619 0.00 0.00 0.00 3.46
484 485 4.965119 ATTCGTTTCATACCTGCCTTTC 57.035 40.909 0.00 0.00 0.00 2.62
485 486 4.638865 GGTATTCGTTTCATACCTGCCTTT 59.361 41.667 2.39 0.00 42.13 3.11
486 487 4.196971 GGTATTCGTTTCATACCTGCCTT 58.803 43.478 2.39 0.00 42.13 4.35
487 488 3.433173 GGGTATTCGTTTCATACCTGCCT 60.433 47.826 8.63 0.00 44.08 4.75
488 489 2.876550 GGGTATTCGTTTCATACCTGCC 59.123 50.000 8.63 0.00 44.08 4.85
489 490 3.537580 TGGGTATTCGTTTCATACCTGC 58.462 45.455 8.63 0.00 44.08 4.85
490 491 6.542370 AGAAATGGGTATTCGTTTCATACCTG 59.458 38.462 8.63 0.00 44.08 4.00
491 492 6.659824 AGAAATGGGTATTCGTTTCATACCT 58.340 36.000 8.63 0.00 44.08 3.08
492 493 6.937436 AGAAATGGGTATTCGTTTCATACC 57.063 37.500 10.78 1.06 43.95 2.73
493 494 7.307811 GGCTAGAAATGGGTATTCGTTTCATAC 60.308 40.741 10.78 0.00 42.18 2.39
494 495 6.708949 GGCTAGAAATGGGTATTCGTTTCATA 59.291 38.462 10.78 2.54 42.18 2.15
495 496 5.531287 GGCTAGAAATGGGTATTCGTTTCAT 59.469 40.000 10.78 0.00 42.18 2.57
496 497 4.879545 GGCTAGAAATGGGTATTCGTTTCA 59.120 41.667 10.78 0.00 42.18 2.69
497 498 4.275196 GGGCTAGAAATGGGTATTCGTTTC 59.725 45.833 0.00 0.00 40.85 2.78
498 499 4.204799 GGGCTAGAAATGGGTATTCGTTT 58.795 43.478 0.00 0.00 32.04 3.60
499 500 3.201266 TGGGCTAGAAATGGGTATTCGTT 59.799 43.478 0.00 0.00 32.04 3.85
500 501 2.775384 TGGGCTAGAAATGGGTATTCGT 59.225 45.455 0.00 0.00 32.04 3.85
501 502 3.403038 CTGGGCTAGAAATGGGTATTCG 58.597 50.000 0.00 0.00 32.04 3.34
502 503 3.756117 CCTGGGCTAGAAATGGGTATTC 58.244 50.000 0.00 0.00 0.00 1.75
503 504 2.158460 GCCTGGGCTAGAAATGGGTATT 60.158 50.000 0.00 0.00 38.26 1.89
504 505 1.425448 GCCTGGGCTAGAAATGGGTAT 59.575 52.381 0.00 0.00 38.26 2.73
505 506 0.843984 GCCTGGGCTAGAAATGGGTA 59.156 55.000 0.00 0.00 38.26 3.69
506 507 1.615262 GCCTGGGCTAGAAATGGGT 59.385 57.895 0.00 0.00 38.26 4.51
507 508 4.587056 GCCTGGGCTAGAAATGGG 57.413 61.111 0.00 0.00 38.26 4.00
517 518 3.741476 CGTGCAGAAAGCCTGGGC 61.741 66.667 3.00 3.00 44.83 5.36
518 519 3.741476 GCGTGCAGAAAGCCTGGG 61.741 66.667 0.00 0.00 44.83 4.45
519 520 4.093952 CGCGTGCAGAAAGCCTGG 62.094 66.667 0.00 0.00 44.83 4.45
520 521 4.093952 CCGCGTGCAGAAAGCCTG 62.094 66.667 4.92 0.00 44.83 4.85
521 522 4.626081 ACCGCGTGCAGAAAGCCT 62.626 61.111 4.92 0.00 44.83 4.58
522 523 4.389576 CACCGCGTGCAGAAAGCC 62.390 66.667 4.92 0.00 44.83 4.35
523 524 2.770587 CTTCACCGCGTGCAGAAAGC 62.771 60.000 4.92 0.00 45.96 3.51
524 525 1.205064 CTTCACCGCGTGCAGAAAG 59.795 57.895 4.92 0.00 28.74 2.62
525 526 1.221466 CTCTTCACCGCGTGCAGAAA 61.221 55.000 4.92 0.00 35.66 2.52
526 527 1.664649 CTCTTCACCGCGTGCAGAA 60.665 57.895 4.92 2.47 35.66 3.02
527 528 2.049156 CTCTTCACCGCGTGCAGA 60.049 61.111 4.92 8.01 33.88 4.26
528 529 1.664649 TTCTCTTCACCGCGTGCAG 60.665 57.895 4.92 3.67 32.98 4.41
529 530 1.954146 GTTCTCTTCACCGCGTGCA 60.954 57.895 4.92 0.00 32.98 4.57
530 531 1.291877 ATGTTCTCTTCACCGCGTGC 61.292 55.000 4.92 0.00 32.98 5.34
531 532 1.148310 AATGTTCTCTTCACCGCGTG 58.852 50.000 4.92 3.64 34.45 5.34
532 533 1.798813 GAAATGTTCTCTTCACCGCGT 59.201 47.619 4.92 0.00 0.00 6.01
533 534 1.798223 TGAAATGTTCTCTTCACCGCG 59.202 47.619 0.00 0.00 0.00 6.46
534 535 3.896648 TTGAAATGTTCTCTTCACCGC 57.103 42.857 0.00 0.00 31.41 5.68
576 577 8.431593 GCACGCACAAAATTATCTTTCATAAAA 58.568 29.630 0.00 0.00 0.00 1.52
577 578 7.201308 CGCACGCACAAAATTATCTTTCATAAA 60.201 33.333 0.00 0.00 0.00 1.40
578 579 6.250315 CGCACGCACAAAATTATCTTTCATAA 59.750 34.615 0.00 0.00 0.00 1.90
579 580 5.736824 CGCACGCACAAAATTATCTTTCATA 59.263 36.000 0.00 0.00 0.00 2.15
580 581 4.558470 CGCACGCACAAAATTATCTTTCAT 59.442 37.500 0.00 0.00 0.00 2.57
581 582 3.911365 CGCACGCACAAAATTATCTTTCA 59.089 39.130 0.00 0.00 0.00 2.69
582 583 3.300590 CCGCACGCACAAAATTATCTTTC 59.699 43.478 0.00 0.00 0.00 2.62
583 584 3.241701 CCGCACGCACAAAATTATCTTT 58.758 40.909 0.00 0.00 0.00 2.52
584 585 2.227865 ACCGCACGCACAAAATTATCTT 59.772 40.909 0.00 0.00 0.00 2.40
585 586 1.810151 ACCGCACGCACAAAATTATCT 59.190 42.857 0.00 0.00 0.00 1.98
586 587 1.910819 CACCGCACGCACAAAATTATC 59.089 47.619 0.00 0.00 0.00 1.75
587 588 1.975837 CACCGCACGCACAAAATTAT 58.024 45.000 0.00 0.00 0.00 1.28
588 589 0.661780 GCACCGCACGCACAAAATTA 60.662 50.000 0.00 0.00 0.00 1.40
589 590 1.948635 GCACCGCACGCACAAAATT 60.949 52.632 0.00 0.00 0.00 1.82
590 591 2.354539 GCACCGCACGCACAAAAT 60.355 55.556 0.00 0.00 0.00 1.82
591 592 4.896028 CGCACCGCACGCACAAAA 62.896 61.111 0.00 0.00 0.00 2.44
602 603 0.454957 CTGAAATTTGGAGCGCACCG 60.455 55.000 19.24 0.00 0.00 4.94
603 604 0.881118 TCTGAAATTTGGAGCGCACC 59.119 50.000 17.78 17.78 0.00 5.01
604 605 2.162208 TGATCTGAAATTTGGAGCGCAC 59.838 45.455 11.47 1.97 0.00 5.34
605 606 2.435422 TGATCTGAAATTTGGAGCGCA 58.565 42.857 11.47 0.00 0.00 6.09
606 607 3.705043 ATGATCTGAAATTTGGAGCGC 57.295 42.857 0.00 0.00 0.00 5.92
607 608 5.643664 TCAAATGATCTGAAATTTGGAGCG 58.356 37.500 20.17 4.42 41.83 5.03
608 609 6.869913 TGTTCAAATGATCTGAAATTTGGAGC 59.130 34.615 20.17 14.15 41.83 4.70
609 610 8.997621 ATGTTCAAATGATCTGAAATTTGGAG 57.002 30.769 20.17 0.00 41.83 3.86
617 618 9.049523 GCTACTCATATGTTCAAATGATCTGAA 57.950 33.333 1.90 0.00 31.95 3.02
618 619 8.427276 AGCTACTCATATGTTCAAATGATCTGA 58.573 33.333 1.90 0.00 31.95 3.27
619 620 8.604640 AGCTACTCATATGTTCAAATGATCTG 57.395 34.615 1.90 0.00 31.95 2.90
620 621 8.649591 AGAGCTACTCATATGTTCAAATGATCT 58.350 33.333 1.90 0.00 31.95 2.75
621 622 8.830201 AGAGCTACTCATATGTTCAAATGATC 57.170 34.615 1.90 0.00 31.95 2.92
622 623 8.830201 GAGAGCTACTCATATGTTCAAATGAT 57.170 34.615 1.90 0.00 44.36 2.45
652 653 4.080638 TGTTCTGACCCAATTTGCCTTTTT 60.081 37.500 0.00 0.00 0.00 1.94
653 654 3.454082 TGTTCTGACCCAATTTGCCTTTT 59.546 39.130 0.00 0.00 0.00 2.27
654 655 3.037549 TGTTCTGACCCAATTTGCCTTT 58.962 40.909 0.00 0.00 0.00 3.11
655 656 2.676748 TGTTCTGACCCAATTTGCCTT 58.323 42.857 0.00 0.00 0.00 4.35
656 657 2.380064 TGTTCTGACCCAATTTGCCT 57.620 45.000 0.00 0.00 0.00 4.75
657 658 3.683365 ATTGTTCTGACCCAATTTGCC 57.317 42.857 0.00 0.00 0.00 4.52
658 659 5.132897 TGTATTGTTCTGACCCAATTTGC 57.867 39.130 6.96 0.00 33.54 3.68
659 660 6.923012 TCATGTATTGTTCTGACCCAATTTG 58.077 36.000 6.96 0.00 33.54 2.32
660 661 7.015098 TGTTCATGTATTGTTCTGACCCAATTT 59.985 33.333 6.96 0.00 33.54 1.82
661 662 6.493115 TGTTCATGTATTGTTCTGACCCAATT 59.507 34.615 6.96 0.00 33.54 2.32
662 663 6.009589 TGTTCATGTATTGTTCTGACCCAAT 58.990 36.000 6.88 6.88 35.55 3.16
663 664 5.380900 TGTTCATGTATTGTTCTGACCCAA 58.619 37.500 0.00 0.00 0.00 4.12
664 665 4.979335 TGTTCATGTATTGTTCTGACCCA 58.021 39.130 0.00 0.00 0.00 4.51
665 666 5.957842 TTGTTCATGTATTGTTCTGACCC 57.042 39.130 0.00 0.00 0.00 4.46
666 667 9.906660 TTTTATTGTTCATGTATTGTTCTGACC 57.093 29.630 0.00 0.00 0.00 4.02
691 692 7.432148 ACAACTTTAGGGTCTGGAAATTTTT 57.568 32.000 0.00 0.00 0.00 1.94
692 693 7.432148 AACAACTTTAGGGTCTGGAAATTTT 57.568 32.000 0.00 0.00 0.00 1.82
693 694 7.432148 AAACAACTTTAGGGTCTGGAAATTT 57.568 32.000 0.00 0.00 0.00 1.82
694 695 7.432148 AAAACAACTTTAGGGTCTGGAAATT 57.568 32.000 0.00 0.00 0.00 1.82
695 696 7.432148 AAAAACAACTTTAGGGTCTGGAAAT 57.568 32.000 0.00 0.00 0.00 2.17
696 697 6.860790 AAAAACAACTTTAGGGTCTGGAAA 57.139 33.333 0.00 0.00 0.00 3.13
727 728 3.944055 TTAGACACCTGAGCAGTTCTC 57.056 47.619 0.00 0.00 42.23 2.87
728 729 4.284490 TCATTTAGACACCTGAGCAGTTCT 59.716 41.667 0.00 0.00 0.00 3.01
729 730 4.569943 TCATTTAGACACCTGAGCAGTTC 58.430 43.478 0.00 0.00 0.00 3.01
730 731 4.623932 TCATTTAGACACCTGAGCAGTT 57.376 40.909 0.00 0.00 0.00 3.16
731 732 4.469227 AGATCATTTAGACACCTGAGCAGT 59.531 41.667 0.00 0.00 0.00 4.40
732 733 5.021033 AGATCATTTAGACACCTGAGCAG 57.979 43.478 0.00 0.00 0.00 4.24
733 734 6.544928 TTAGATCATTTAGACACCTGAGCA 57.455 37.500 0.00 0.00 0.00 4.26
734 735 8.443953 AATTTAGATCATTTAGACACCTGAGC 57.556 34.615 0.00 0.00 0.00 4.26
746 747 9.247861 AGGTGCTCTACAAAATTTAGATCATTT 57.752 29.630 0.00 0.00 27.58 2.32
747 748 8.814038 AGGTGCTCTACAAAATTTAGATCATT 57.186 30.769 0.00 0.00 27.58 2.57
748 749 7.225538 CGAGGTGCTCTACAAAATTTAGATCAT 59.774 37.037 0.00 0.00 27.58 2.45
749 750 6.535150 CGAGGTGCTCTACAAAATTTAGATCA 59.465 38.462 0.00 0.00 0.00 2.92
750 751 6.510317 GCGAGGTGCTCTACAAAATTTAGATC 60.510 42.308 0.00 0.00 41.73 2.75
751 752 5.294552 GCGAGGTGCTCTACAAAATTTAGAT 59.705 40.000 0.00 0.00 41.73 1.98
752 753 4.630069 GCGAGGTGCTCTACAAAATTTAGA 59.370 41.667 0.00 0.00 41.73 2.10
753 754 4.492570 CGCGAGGTGCTCTACAAAATTTAG 60.493 45.833 0.00 0.00 43.27 1.85
754 755 3.369756 CGCGAGGTGCTCTACAAAATTTA 59.630 43.478 0.00 0.00 43.27 1.40
755 756 2.159627 CGCGAGGTGCTCTACAAAATTT 59.840 45.455 0.00 0.00 43.27 1.82
756 757 1.732259 CGCGAGGTGCTCTACAAAATT 59.268 47.619 0.00 0.00 43.27 1.82
757 758 1.337823 ACGCGAGGTGCTCTACAAAAT 60.338 47.619 15.93 0.00 43.27 1.82
758 759 0.032952 ACGCGAGGTGCTCTACAAAA 59.967 50.000 15.93 0.00 43.27 2.44
759 760 0.883153 TACGCGAGGTGCTCTACAAA 59.117 50.000 15.93 0.00 43.27 2.83
760 761 1.065102 GATACGCGAGGTGCTCTACAA 59.935 52.381 15.93 0.00 43.27 2.41
761 762 0.661552 GATACGCGAGGTGCTCTACA 59.338 55.000 15.93 0.00 43.27 2.74
762 763 0.661552 TGATACGCGAGGTGCTCTAC 59.338 55.000 15.93 0.00 43.27 2.59
763 764 1.385528 TTGATACGCGAGGTGCTCTA 58.614 50.000 15.93 0.00 43.27 2.43
764 765 0.530744 TTTGATACGCGAGGTGCTCT 59.469 50.000 15.93 0.00 43.27 4.09
765 766 1.571919 ATTTGATACGCGAGGTGCTC 58.428 50.000 15.93 0.06 43.27 4.26
766 767 2.024176 AATTTGATACGCGAGGTGCT 57.976 45.000 15.93 0.00 43.27 4.40
767 768 3.741344 AGATAATTTGATACGCGAGGTGC 59.259 43.478 15.93 0.00 41.47 5.01
768 769 5.107453 GGAAGATAATTTGATACGCGAGGTG 60.107 44.000 15.93 0.00 0.00 4.00
769 770 4.989168 GGAAGATAATTTGATACGCGAGGT 59.011 41.667 15.93 0.00 0.00 3.85
770 771 4.090066 CGGAAGATAATTTGATACGCGAGG 59.910 45.833 15.93 0.00 0.00 4.63
771 772 4.680110 ACGGAAGATAATTTGATACGCGAG 59.320 41.667 15.93 0.00 0.00 5.03
772 773 4.443063 CACGGAAGATAATTTGATACGCGA 59.557 41.667 15.93 0.00 0.00 5.87
773 774 4.688063 CACGGAAGATAATTTGATACGCG 58.312 43.478 3.53 3.53 0.00 6.01
774 775 4.025229 TGCACGGAAGATAATTTGATACGC 60.025 41.667 0.00 0.00 0.00 4.42
775 776 5.651172 TGCACGGAAGATAATTTGATACG 57.349 39.130 0.00 0.00 0.00 3.06
776 777 7.432252 CCTTTTGCACGGAAGATAATTTGATAC 59.568 37.037 5.48 0.00 0.00 2.24
777 778 7.338196 TCCTTTTGCACGGAAGATAATTTGATA 59.662 33.333 5.48 0.00 0.00 2.15
778 779 6.152661 TCCTTTTGCACGGAAGATAATTTGAT 59.847 34.615 5.48 0.00 0.00 2.57
779 780 5.475220 TCCTTTTGCACGGAAGATAATTTGA 59.525 36.000 5.48 0.00 0.00 2.69
780 781 5.708948 TCCTTTTGCACGGAAGATAATTTG 58.291 37.500 5.48 0.00 0.00 2.32
781 782 5.975693 TCCTTTTGCACGGAAGATAATTT 57.024 34.783 5.48 0.00 0.00 1.82
782 783 5.975693 TTCCTTTTGCACGGAAGATAATT 57.024 34.783 7.11 0.00 34.52 1.40
783 784 5.975693 TTTCCTTTTGCACGGAAGATAAT 57.024 34.783 10.23 0.00 40.17 1.28
784 785 5.475220 TGATTTCCTTTTGCACGGAAGATAA 59.525 36.000 10.23 0.00 40.17 1.75
785 786 5.007034 TGATTTCCTTTTGCACGGAAGATA 58.993 37.500 10.23 0.00 40.17 1.98
786 787 3.826157 TGATTTCCTTTTGCACGGAAGAT 59.174 39.130 10.23 7.99 40.17 2.40
787 788 3.218453 TGATTTCCTTTTGCACGGAAGA 58.782 40.909 10.23 4.59 40.17 2.87
788 789 3.253188 TCTGATTTCCTTTTGCACGGAAG 59.747 43.478 10.23 4.56 40.17 3.46
789 790 3.218453 TCTGATTTCCTTTTGCACGGAA 58.782 40.909 7.11 7.11 37.52 4.30
790 791 2.857483 TCTGATTTCCTTTTGCACGGA 58.143 42.857 0.00 0.00 0.00 4.69
791 792 3.641437 TTCTGATTTCCTTTTGCACGG 57.359 42.857 0.00 0.00 0.00 4.94
792 793 6.529463 AAAATTCTGATTTCCTTTTGCACG 57.471 33.333 0.00 0.00 34.44 5.34
830 831 9.128107 GCGATGAACAGAAATTCAAAAAGAATA 57.872 29.630 0.00 0.00 46.09 1.75
832 833 6.142161 CGCGATGAACAGAAATTCAAAAAGAA 59.858 34.615 0.00 0.00 41.78 2.52
833 834 5.624900 CGCGATGAACAGAAATTCAAAAAGA 59.375 36.000 0.00 0.00 41.78 2.52
834 835 5.164158 CCGCGATGAACAGAAATTCAAAAAG 60.164 40.000 8.23 0.00 41.78 2.27
835 836 4.679197 CCGCGATGAACAGAAATTCAAAAA 59.321 37.500 8.23 0.00 41.78 1.94
836 837 4.225984 CCGCGATGAACAGAAATTCAAAA 58.774 39.130 8.23 0.00 41.78 2.44
837 838 3.820689 CCGCGATGAACAGAAATTCAAA 58.179 40.909 8.23 0.00 41.78 2.69
838 839 2.414029 GCCGCGATGAACAGAAATTCAA 60.414 45.455 8.23 0.00 41.78 2.69
839 840 1.130373 GCCGCGATGAACAGAAATTCA 59.870 47.619 8.23 0.00 42.62 2.57
840 841 1.398390 AGCCGCGATGAACAGAAATTC 59.602 47.619 8.23 0.00 0.00 2.17
841 842 1.131126 CAGCCGCGATGAACAGAAATT 59.869 47.619 8.23 0.00 0.00 1.82
842 843 0.729116 CAGCCGCGATGAACAGAAAT 59.271 50.000 8.23 0.00 0.00 2.17
843 844 0.320334 TCAGCCGCGATGAACAGAAA 60.320 50.000 8.23 0.00 0.00 2.52
844 845 0.737367 CTCAGCCGCGATGAACAGAA 60.737 55.000 8.23 0.00 0.00 3.02
845 846 1.153765 CTCAGCCGCGATGAACAGA 60.154 57.895 8.23 0.00 0.00 3.41
846 847 1.153765 TCTCAGCCGCGATGAACAG 60.154 57.895 8.23 0.06 0.00 3.16
847 848 1.446099 GTCTCAGCCGCGATGAACA 60.446 57.895 8.23 0.00 0.00 3.18
848 849 1.153745 AGTCTCAGCCGCGATGAAC 60.154 57.895 8.23 11.96 0.00 3.18
849 850 1.153765 CAGTCTCAGCCGCGATGAA 60.154 57.895 8.23 0.14 0.00 2.57
850 851 1.997928 CTCAGTCTCAGCCGCGATGA 61.998 60.000 8.23 10.99 0.00 2.92
851 852 1.588403 CTCAGTCTCAGCCGCGATG 60.588 63.158 8.23 6.27 0.00 3.84
852 853 2.804167 CTCAGTCTCAGCCGCGAT 59.196 61.111 8.23 0.00 0.00 4.58
853 854 4.121669 GCTCAGTCTCAGCCGCGA 62.122 66.667 8.23 0.00 0.00 5.87
854 855 4.426112 TGCTCAGTCTCAGCCGCG 62.426 66.667 0.00 0.00 35.89 6.46
855 856 2.813042 GTGCTCAGTCTCAGCCGC 60.813 66.667 0.00 0.00 35.89 6.53
856 857 2.125753 GGTGCTCAGTCTCAGCCG 60.126 66.667 0.00 0.00 35.89 5.52
857 858 2.125753 CGGTGCTCAGTCTCAGCC 60.126 66.667 0.00 0.00 35.89 4.85
858 859 0.108424 ATTCGGTGCTCAGTCTCAGC 60.108 55.000 0.00 0.00 37.40 4.26
859 860 1.796982 CGATTCGGTGCTCAGTCTCAG 60.797 57.143 0.00 0.00 0.00 3.35
860 861 0.171231 CGATTCGGTGCTCAGTCTCA 59.829 55.000 0.00 0.00 0.00 3.27
861 862 1.142778 GCGATTCGGTGCTCAGTCTC 61.143 60.000 8.34 0.00 0.00 3.36
862 863 1.153745 GCGATTCGGTGCTCAGTCT 60.154 57.895 8.34 0.00 0.00 3.24
863 864 2.167861 GGCGATTCGGTGCTCAGTC 61.168 63.158 8.34 0.00 0.00 3.51
864 865 2.125512 GGCGATTCGGTGCTCAGT 60.126 61.111 8.34 0.00 0.00 3.41
865 866 1.880340 GAGGCGATTCGGTGCTCAG 60.880 63.158 8.34 0.00 0.00 3.35
866 867 2.184322 GAGGCGATTCGGTGCTCA 59.816 61.111 8.34 0.00 0.00 4.26
867 868 2.956964 CGAGGCGATTCGGTGCTC 60.957 66.667 8.34 0.00 36.95 4.26
868 869 3.701604 GACGAGGCGATTCGGTGCT 62.702 63.158 8.34 0.00 44.57 4.40
869 870 3.255379 GACGAGGCGATTCGGTGC 61.255 66.667 8.34 0.00 44.57 5.01
870 871 2.582498 GGACGAGGCGATTCGGTG 60.582 66.667 8.34 0.00 44.57 4.94
871 872 4.189188 CGGACGAGGCGATTCGGT 62.189 66.667 8.34 0.00 44.57 4.69
872 873 4.925576 CCGGACGAGGCGATTCGG 62.926 72.222 8.34 0.00 44.57 4.30
873 874 2.126417 ATACCGGACGAGGCGATTCG 62.126 60.000 9.46 0.62 45.70 3.34
874 875 0.877071 TATACCGGACGAGGCGATTC 59.123 55.000 9.46 0.00 33.69 2.52
875 876 1.321474 TTATACCGGACGAGGCGATT 58.679 50.000 9.46 0.00 33.69 3.34
876 877 1.321474 TTTATACCGGACGAGGCGAT 58.679 50.000 9.46 0.00 33.69 4.58
877 878 1.102154 TTTTATACCGGACGAGGCGA 58.898 50.000 9.46 0.00 33.69 5.54
878 879 2.144482 ATTTTATACCGGACGAGGCG 57.856 50.000 9.46 0.00 33.69 5.52
879 880 5.525012 ACTTAAATTTTATACCGGACGAGGC 59.475 40.000 9.46 0.00 33.69 4.70
880 881 6.982724 AGACTTAAATTTTATACCGGACGAGG 59.017 38.462 9.46 0.00 37.30 4.63
881 882 7.998753 AGACTTAAATTTTATACCGGACGAG 57.001 36.000 9.46 0.00 0.00 4.18
882 883 8.776376 AAAGACTTAAATTTTATACCGGACGA 57.224 30.769 9.46 0.00 0.00 4.20
883 884 8.876790 AGAAAGACTTAAATTTTATACCGGACG 58.123 33.333 9.46 0.00 0.00 4.79
893 894 6.198966 CAGCGCACAAGAAAGACTTAAATTTT 59.801 34.615 11.47 0.00 37.03 1.82
906 908 1.580942 GGAATGCAGCGCACAAGAA 59.419 52.632 11.47 0.00 43.04 2.52
925 927 6.010219 TGTTCTTTTCTCTATTTTCCCCTGG 58.990 40.000 0.00 0.00 0.00 4.45
927 929 6.010850 GGTGTTCTTTTCTCTATTTTCCCCT 58.989 40.000 0.00 0.00 0.00 4.79
929 931 6.567891 CGTGGTGTTCTTTTCTCTATTTTCCC 60.568 42.308 0.00 0.00 0.00 3.97
931 933 5.851703 GCGTGGTGTTCTTTTCTCTATTTTC 59.148 40.000 0.00 0.00 0.00 2.29
932 934 5.278315 GGCGTGGTGTTCTTTTCTCTATTTT 60.278 40.000 0.00 0.00 0.00 1.82
936 938 2.762745 GGCGTGGTGTTCTTTTCTCTA 58.237 47.619 0.00 0.00 0.00 2.43
937 939 1.594331 GGCGTGGTGTTCTTTTCTCT 58.406 50.000 0.00 0.00 0.00 3.10
938 940 0.234884 CGGCGTGGTGTTCTTTTCTC 59.765 55.000 0.00 0.00 0.00 2.87
1005 1007 3.470888 AAGGCGATCCTCGGTGGG 61.471 66.667 0.00 0.00 43.40 4.61
1362 1364 1.679305 GGACCTGAGCGACTGGAGA 60.679 63.158 14.31 0.00 40.23 3.71
1401 1403 4.308458 TGGGCGTTGGGTGAGACG 62.308 66.667 0.00 0.00 41.89 4.18
1518 1520 1.734117 CGCACTCAGCACGATGTCA 60.734 57.895 0.00 0.00 46.13 3.58
1962 1964 3.305471 GCACAAGAACCTTCTCGTACTCT 60.305 47.826 0.00 0.00 36.28 3.24
2349 2351 6.488006 GCTCAACCATTCCAGTATGATTACAT 59.512 38.462 0.00 0.00 39.69 2.29
2868 2870 0.798776 CACAGGACAGAATCGCCAAC 59.201 55.000 0.00 0.00 0.00 3.77
2869 2871 0.684535 TCACAGGACAGAATCGCCAA 59.315 50.000 0.00 0.00 0.00 4.52
2870 2872 0.904649 ATCACAGGACAGAATCGCCA 59.095 50.000 0.00 0.00 0.00 5.69
2871 2873 1.667724 CAATCACAGGACAGAATCGCC 59.332 52.381 0.00 0.00 0.00 5.54
3151 3157 1.548269 CCTGTCTGAGAGTCCCACTTC 59.452 57.143 0.87 0.00 0.00 3.01
3199 3205 5.287226 AGTACAGAGAAAACGTACTTGTGG 58.713 41.667 0.00 0.00 42.37 4.17
3298 3304 4.472690 AGGTTAGCCTGCTAGTACCTAT 57.527 45.455 17.10 0.10 45.05 2.57
3318 3324 5.847304 TCTGCAGTTGGATTAGTATAGCAG 58.153 41.667 14.67 0.00 45.96 4.24
3326 3332 6.506500 AAAATGTCTCTGCAGTTGGATTAG 57.493 37.500 14.67 1.43 0.00 1.73
3403 3410 3.758755 TCAAGCTCAAGACACAGTGAT 57.241 42.857 7.81 0.00 0.00 3.06
3516 3524 8.828688 AAGCTTGTCTACGAAAACTATTTACT 57.171 30.769 0.00 0.00 0.00 2.24
3645 3678 6.296026 TGGTAGGCAATACAATCCTTGATAC 58.704 40.000 1.34 0.00 35.96 2.24
3714 3747 7.807977 ATTCACTAAAATGGCGTAATCTGAT 57.192 32.000 0.00 0.00 0.00 2.90
3747 3780 3.495377 ACACACATCAAAATGCATGTTGC 59.505 39.130 22.66 0.00 45.29 4.17
3749 3782 5.816258 TCAAACACACATCAAAATGCATGTT 59.184 32.000 0.00 0.00 42.04 2.71
3808 3844 3.951563 AGGGCCATATGCTTCAGTTAA 57.048 42.857 6.18 0.00 40.92 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.