Multiple sequence alignment - TraesCS7D01G399000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G399000 chr7D 100.000 3757 0 0 1 3757 515238976 515235220 0.000000e+00 6938.0
1 TraesCS7D01G399000 chr7D 99.201 3757 29 1 1 3757 515222770 515219015 0.000000e+00 6770.0
2 TraesCS7D01G399000 chr7D 97.282 1030 19 4 619 1643 514091991 514093016 0.000000e+00 1738.0
3 TraesCS7D01G399000 chr7D 97.617 965 21 1 1948 2910 514093015 514093979 0.000000e+00 1653.0
4 TraesCS7D01G399000 chr7D 95.524 849 32 5 771 1615 513311733 513312579 0.000000e+00 1352.0
5 TraesCS7D01G399000 chr7D 95.006 781 34 2 1982 2757 513312651 513313431 0.000000e+00 1221.0
6 TraesCS7D01G399000 chr7D 94.695 754 33 2 3004 3757 514093978 514094724 0.000000e+00 1164.0
7 TraesCS7D01G399000 chr7D 94.501 491 25 2 3131 3620 568402838 568402349 0.000000e+00 756.0
8 TraesCS7D01G399000 chr7D 94.565 368 15 4 252 616 514090472 514090837 7.040000e-157 564.0
9 TraesCS7D01G399000 chr7D 96.486 313 11 0 1638 1950 617014211 617013899 5.560000e-143 518.0
10 TraesCS7D01G399000 chr7D 78.886 341 28 14 575 872 513310135 513310474 1.380000e-44 191.0
11 TraesCS7D01G399000 chr7D 91.176 102 9 0 3656 3757 568402353 568402252 5.060000e-29 139.0
12 TraesCS7D01G399000 chr7A 93.019 1189 52 16 480 1643 586694210 586693028 0.000000e+00 1707.0
13 TraesCS7D01G399000 chr7A 96.788 965 29 1 1948 2910 587519139 587520103 0.000000e+00 1609.0
14 TraesCS7D01G399000 chr7A 96.698 969 26 3 1948 2910 588739772 588738804 0.000000e+00 1607.0
15 TraesCS7D01G399000 chr7A 94.052 891 35 6 771 1643 588740661 588739771 0.000000e+00 1336.0
16 TraesCS7D01G399000 chr7A 95.926 810 29 1 1948 2757 586693029 586692224 0.000000e+00 1310.0
17 TraesCS7D01G399000 chr7A 96.970 660 20 0 984 1643 587518481 587519140 0.000000e+00 1109.0
18 TraesCS7D01G399000 chr7A 89.089 779 41 23 252 994 588751310 588750540 0.000000e+00 928.0
19 TraesCS7D01G399000 chr7A 96.421 447 14 2 3229 3675 588725072 588724628 0.000000e+00 736.0
20 TraesCS7D01G399000 chr7A 91.845 515 28 13 252 760 587517830 587518336 0.000000e+00 706.0
21 TraesCS7D01G399000 chr7A 91.026 234 21 0 3004 3237 588738805 588738572 2.180000e-82 316.0
22 TraesCS7D01G399000 chr7A 90.638 235 21 1 3004 3237 587520102 587520336 1.010000e-80 311.0
23 TraesCS7D01G399000 chr7A 90.000 240 13 9 241 477 588740848 588740617 2.190000e-77 300.0
24 TraesCS7D01G399000 chr7A 94.175 103 6 0 2905 3007 82195718 82195616 1.400000e-34 158.0
25 TraesCS7D01G399000 chr7A 94.898 98 5 0 3658 3755 588724605 588724508 1.810000e-33 154.0
26 TraesCS7D01G399000 chr7B 94.894 1038 25 6 605 1615 544981824 544982860 0.000000e+00 1598.0
27 TraesCS7D01G399000 chr7B 95.592 862 19 3 772 1615 545975504 545974644 0.000000e+00 1363.0
28 TraesCS7D01G399000 chr7B 94.213 864 28 6 771 1615 544880922 544881782 0.000000e+00 1299.0
29 TraesCS7D01G399000 chr7B 96.144 752 29 0 1998 2749 544881877 544882628 0.000000e+00 1229.0
30 TraesCS7D01G399000 chr7B 96.144 752 29 0 1998 2749 545974549 545973798 0.000000e+00 1229.0
31 TraesCS7D01G399000 chr7B 95.745 752 32 0 1998 2749 544982955 544983706 0.000000e+00 1212.0
32 TraesCS7D01G399000 chr7B 93.801 371 17 5 252 620 544966589 544966955 1.520000e-153 553.0
33 TraesCS7D01G399000 chr7B 92.523 107 6 2 2909 3014 217312359 217312254 6.500000e-33 152.0
34 TraesCS7D01G399000 chr2D 93.750 496 28 3 3127 3620 100433590 100434084 0.000000e+00 741.0
35 TraesCS7D01G399000 chr2D 92.157 102 8 0 3656 3757 100434080 100434181 1.090000e-30 145.0
36 TraesCS7D01G399000 chr2D 100.000 30 0 0 2867 2896 22419407 22419436 5.240000e-04 56.5
37 TraesCS7D01G399000 chr2D 100.000 30 0 0 2867 2896 409603292 409603263 5.240000e-04 56.5
38 TraesCS7D01G399000 chr6D 92.605 311 20 2 1639 1949 166773130 166773437 9.580000e-121 444.0
39 TraesCS7D01G399000 chr3D 91.746 315 22 2 1636 1949 479746392 479746703 5.760000e-118 435.0
40 TraesCS7D01G399000 chr3D 93.269 104 7 0 2905 3008 290583919 290583816 1.810000e-33 154.0
41 TraesCS7D01G399000 chr1D 91.558 308 23 1 1642 1949 108335704 108335400 4.490000e-114 422.0
42 TraesCS7D01G399000 chr1D 90.968 310 21 5 1642 1950 236959415 236959112 9.710000e-111 411.0
43 TraesCS7D01G399000 chr1D 89.916 119 12 0 2906 3024 433922672 433922790 1.810000e-33 154.0
44 TraesCS7D01G399000 chr2B 91.262 309 23 2 1642 1950 92098595 92098899 5.800000e-113 418.0
45 TraesCS7D01G399000 chr2B 94.000 100 6 0 2907 3006 575876524 575876623 6.500000e-33 152.0
46 TraesCS7D01G399000 chr1A 90.093 323 27 4 1632 1954 15730346 15730029 7.510000e-112 414.0
47 TraesCS7D01G399000 chr6B 90.221 317 27 2 1635 1950 182454032 182453719 9.710000e-111 411.0
48 TraesCS7D01G399000 chr5B 92.523 107 8 0 2903 3009 685439361 685439255 1.810000e-33 154.0
49 TraesCS7D01G399000 chr5B 91.150 113 7 3 2893 3005 591582607 591582716 2.340000e-32 150.0
50 TraesCS7D01G399000 chr1B 93.878 98 6 0 2908 3005 48923734 48923637 8.410000e-32 148.0
51 TraesCS7D01G399000 chr5D 94.595 37 1 1 2867 2902 71892769 71892805 5.240000e-04 56.5
52 TraesCS7D01G399000 chr5D 100.000 30 0 0 2867 2896 278311338 278311367 5.240000e-04 56.5
53 TraesCS7D01G399000 chr2A 100.000 30 0 0 2867 2896 578163298 578163269 5.240000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G399000 chr7D 515235220 515238976 3756 True 6938.000000 6938 100.000000 1 3757 1 chr7D.!!$R2 3756
1 TraesCS7D01G399000 chr7D 515219015 515222770 3755 True 6770.000000 6770 99.201000 1 3757 1 chr7D.!!$R1 3756
2 TraesCS7D01G399000 chr7D 514090472 514094724 4252 False 1279.750000 1738 96.039750 252 3757 4 chr7D.!!$F2 3505
3 TraesCS7D01G399000 chr7D 513310135 513313431 3296 False 921.333333 1352 89.805333 575 2757 3 chr7D.!!$F1 2182
4 TraesCS7D01G399000 chr7D 568402252 568402838 586 True 447.500000 756 92.838500 3131 3757 2 chr7D.!!$R4 626
5 TraesCS7D01G399000 chr7A 586692224 586694210 1986 True 1508.500000 1707 94.472500 480 2757 2 chr7A.!!$R3 2277
6 TraesCS7D01G399000 chr7A 587517830 587520336 2506 False 933.750000 1609 94.060250 252 3237 4 chr7A.!!$F1 2985
7 TraesCS7D01G399000 chr7A 588750540 588751310 770 True 928.000000 928 89.089000 252 994 1 chr7A.!!$R2 742
8 TraesCS7D01G399000 chr7A 588738572 588740848 2276 True 889.750000 1607 92.944000 241 3237 4 chr7A.!!$R5 2996
9 TraesCS7D01G399000 chr7A 588724508 588725072 564 True 445.000000 736 95.659500 3229 3755 2 chr7A.!!$R4 526
10 TraesCS7D01G399000 chr7B 544981824 544983706 1882 False 1405.000000 1598 95.319500 605 2749 2 chr7B.!!$F3 2144
11 TraesCS7D01G399000 chr7B 545973798 545975504 1706 True 1296.000000 1363 95.868000 772 2749 2 chr7B.!!$R2 1977
12 TraesCS7D01G399000 chr7B 544880922 544882628 1706 False 1264.000000 1299 95.178500 771 2749 2 chr7B.!!$F2 1978
13 TraesCS7D01G399000 chr2D 100433590 100434181 591 False 443.000000 741 92.953500 3127 3757 2 chr2D.!!$F2 630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
578 587 6.923928 AAAGCACAACAGCAAAAATATTGT 57.076 29.167 0.0 0.0 36.85 2.71 F
1702 3775 9.418045 CAAATTACAGGTACCAAGGTAAAATTG 57.582 33.333 20.6 21.2 31.86 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1702 3775 5.413499 AGTTGGCTTGTCAATTATGCATTC 58.587 37.500 3.54 0.0 0.00 2.67 R
2909 4995 1.831736 CTATTGTGGAACGGAGGGAGT 59.168 52.381 0.00 0.0 42.39 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
577 586 9.713740 TTTTAAAGCACAACAGCAAAAATATTG 57.286 25.926 0.00 0.0 36.85 1.90
578 587 6.923928 AAAGCACAACAGCAAAAATATTGT 57.076 29.167 0.00 0.0 36.85 2.71
1702 3775 9.418045 CAAATTACAGGTACCAAGGTAAAATTG 57.582 33.333 20.60 21.2 31.86 2.32
2622 4708 1.141449 CTGCTCTGCTCCGAGAAGG 59.859 63.158 3.36 0.0 42.97 3.46
2911 4997 8.759481 TGAGAATTAGTCATCTCACATCTACT 57.241 34.615 1.55 0.0 45.27 2.57
2912 4998 8.845227 TGAGAATTAGTCATCTCACATCTACTC 58.155 37.037 1.55 0.0 45.27 2.59
2913 4999 8.177119 AGAATTAGTCATCTCACATCTACTCC 57.823 38.462 0.00 0.0 0.00 3.85
2914 5000 6.909550 ATTAGTCATCTCACATCTACTCCC 57.090 41.667 0.00 0.0 0.00 4.30
2915 5001 4.534647 AGTCATCTCACATCTACTCCCT 57.465 45.455 0.00 0.0 0.00 4.20
2916 5002 4.469657 AGTCATCTCACATCTACTCCCTC 58.530 47.826 0.00 0.0 0.00 4.30
2917 5003 3.572255 GTCATCTCACATCTACTCCCTCC 59.428 52.174 0.00 0.0 0.00 4.30
2918 5004 2.350057 TCTCACATCTACTCCCTCCG 57.650 55.000 0.00 0.0 0.00 4.63
2919 5005 1.564818 TCTCACATCTACTCCCTCCGT 59.435 52.381 0.00 0.0 0.00 4.69
2920 5006 2.025226 TCTCACATCTACTCCCTCCGTT 60.025 50.000 0.00 0.0 0.00 4.44
2921 5007 2.359531 CTCACATCTACTCCCTCCGTTC 59.640 54.545 0.00 0.0 0.00 3.95
2922 5008 1.409427 CACATCTACTCCCTCCGTTCC 59.591 57.143 0.00 0.0 0.00 3.62
2923 5009 1.006758 ACATCTACTCCCTCCGTTCCA 59.993 52.381 0.00 0.0 0.00 3.53
2924 5010 1.409427 CATCTACTCCCTCCGTTCCAC 59.591 57.143 0.00 0.0 0.00 4.02
2925 5011 0.406750 TCTACTCCCTCCGTTCCACA 59.593 55.000 0.00 0.0 0.00 4.17
2926 5012 1.203087 TCTACTCCCTCCGTTCCACAA 60.203 52.381 0.00 0.0 0.00 3.33
2927 5013 1.831736 CTACTCCCTCCGTTCCACAAT 59.168 52.381 0.00 0.0 0.00 2.71
2928 5014 1.946984 ACTCCCTCCGTTCCACAATA 58.053 50.000 0.00 0.0 0.00 1.90
2929 5015 1.831736 ACTCCCTCCGTTCCACAATAG 59.168 52.381 0.00 0.0 0.00 1.73
2930 5016 2.108168 CTCCCTCCGTTCCACAATAGA 58.892 52.381 0.00 0.0 0.00 1.98
2931 5017 2.700897 CTCCCTCCGTTCCACAATAGAT 59.299 50.000 0.00 0.0 0.00 1.98
2932 5018 2.434336 TCCCTCCGTTCCACAATAGATG 59.566 50.000 0.00 0.0 0.00 2.90
2933 5019 2.434336 CCCTCCGTTCCACAATAGATGA 59.566 50.000 0.00 0.0 0.00 2.92
2934 5020 3.458189 CCTCCGTTCCACAATAGATGAC 58.542 50.000 0.00 0.0 0.00 3.06
2935 5021 3.133003 CCTCCGTTCCACAATAGATGACT 59.867 47.826 0.00 0.0 0.00 3.41
2936 5022 4.363999 CTCCGTTCCACAATAGATGACTC 58.636 47.826 0.00 0.0 0.00 3.36
2937 5023 3.767131 TCCGTTCCACAATAGATGACTCA 59.233 43.478 0.00 0.0 0.00 3.41
2938 5024 4.221924 TCCGTTCCACAATAGATGACTCAA 59.778 41.667 0.00 0.0 0.00 3.02
2939 5025 4.330074 CCGTTCCACAATAGATGACTCAAC 59.670 45.833 0.00 0.0 0.00 3.18
2940 5026 5.171476 CGTTCCACAATAGATGACTCAACT 58.829 41.667 0.00 0.0 0.00 3.16
2941 5027 5.639506 CGTTCCACAATAGATGACTCAACTT 59.360 40.000 0.00 0.0 0.00 2.66
2942 5028 6.147821 CGTTCCACAATAGATGACTCAACTTT 59.852 38.462 0.00 0.0 0.00 2.66
2943 5029 7.330946 CGTTCCACAATAGATGACTCAACTTTA 59.669 37.037 0.00 0.0 0.00 1.85
2944 5030 9.167311 GTTCCACAATAGATGACTCAACTTTAT 57.833 33.333 0.00 0.0 0.00 1.40
2946 5032 9.817809 TCCACAATAGATGACTCAACTTTATAC 57.182 33.333 0.00 0.0 0.00 1.47
2947 5033 9.823647 CCACAATAGATGACTCAACTTTATACT 57.176 33.333 0.00 0.0 0.00 2.12
2979 5065 8.756486 AATACAAAGTTAGTACAAAGTTGGGT 57.244 30.769 0.00 0.0 0.00 4.51
2980 5066 6.688637 ACAAAGTTAGTACAAAGTTGGGTC 57.311 37.500 0.00 0.0 0.00 4.46
2981 5067 6.181908 ACAAAGTTAGTACAAAGTTGGGTCA 58.818 36.000 0.00 0.0 0.00 4.02
2982 5068 6.831868 ACAAAGTTAGTACAAAGTTGGGTCAT 59.168 34.615 0.00 0.0 0.00 3.06
2983 5069 7.340999 ACAAAGTTAGTACAAAGTTGGGTCATT 59.659 33.333 0.00 0.0 0.00 2.57
2984 5070 7.891498 AAGTTAGTACAAAGTTGGGTCATTT 57.109 32.000 0.00 0.0 0.00 2.32
2985 5071 8.983702 AAGTTAGTACAAAGTTGGGTCATTTA 57.016 30.769 0.00 0.0 0.00 1.40
2986 5072 9.582648 AAGTTAGTACAAAGTTGGGTCATTTAT 57.417 29.630 0.00 0.0 0.00 1.40
2987 5073 9.582648 AGTTAGTACAAAGTTGGGTCATTTATT 57.417 29.630 0.00 0.0 0.00 1.40
2996 5082 9.942850 AAAGTTGGGTCATTTATTTTAGAATGG 57.057 29.630 0.00 0.0 34.74 3.16
2997 5083 8.893563 AGTTGGGTCATTTATTTTAGAATGGA 57.106 30.769 0.00 0.0 34.74 3.41
2998 5084 8.971073 AGTTGGGTCATTTATTTTAGAATGGAG 58.029 33.333 0.00 0.0 34.74 3.86
2999 5085 7.896383 TGGGTCATTTATTTTAGAATGGAGG 57.104 36.000 0.00 0.0 34.74 4.30
3000 5086 6.838612 TGGGTCATTTATTTTAGAATGGAGGG 59.161 38.462 0.00 0.0 34.74 4.30
3001 5087 7.066781 GGGTCATTTATTTTAGAATGGAGGGA 58.933 38.462 0.00 0.0 34.74 4.20
3002 5088 7.231519 GGGTCATTTATTTTAGAATGGAGGGAG 59.768 40.741 0.00 0.0 34.74 4.30
3015 5196 2.693591 TGGAGGGAGTAACTGCTAATCG 59.306 50.000 0.00 0.0 0.00 3.34
3376 5559 4.530553 TGATGGAGCAAGTTACAAGGACTA 59.469 41.667 0.00 0.0 0.00 2.59
3710 5934 1.419762 TGGCAGACTCACCAAAGCTTA 59.580 47.619 0.00 0.0 31.46 3.09
3713 5937 3.507622 GGCAGACTCACCAAAGCTTAAAT 59.492 43.478 0.00 0.0 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 0.832135 TATCTCCTTGCTAGGCCCGG 60.832 60.000 9.60 0.0 41.69 5.73
1702 3775 5.413499 AGTTGGCTTGTCAATTATGCATTC 58.587 37.500 3.54 0.0 0.00 2.67
1971 4044 6.285790 TGCATGCACATTTATACGTAAGAG 57.714 37.500 18.46 0.0 43.62 2.85
2908 4994 1.946984 ATTGTGGAACGGAGGGAGTA 58.053 50.000 0.00 0.0 42.39 2.59
2909 4995 1.831736 CTATTGTGGAACGGAGGGAGT 59.168 52.381 0.00 0.0 42.39 3.85
2910 4996 2.108168 TCTATTGTGGAACGGAGGGAG 58.892 52.381 0.00 0.0 42.39 4.30
2911 4997 2.241281 TCTATTGTGGAACGGAGGGA 57.759 50.000 0.00 0.0 42.39 4.20
2912 4998 2.434336 TCATCTATTGTGGAACGGAGGG 59.566 50.000 0.00 0.0 42.39 4.30
2913 4999 3.133003 AGTCATCTATTGTGGAACGGAGG 59.867 47.826 0.00 0.0 42.39 4.30
2914 5000 4.142160 TGAGTCATCTATTGTGGAACGGAG 60.142 45.833 0.00 0.0 42.39 4.63
2915 5001 3.767131 TGAGTCATCTATTGTGGAACGGA 59.233 43.478 0.00 0.0 42.39 4.69
2916 5002 4.123497 TGAGTCATCTATTGTGGAACGG 57.877 45.455 0.00 0.0 42.39 4.44
2917 5003 5.171476 AGTTGAGTCATCTATTGTGGAACG 58.829 41.667 1.70 0.0 42.39 3.95
2918 5004 7.440523 AAAGTTGAGTCATCTATTGTGGAAC 57.559 36.000 4.14 0.0 37.35 3.62
2920 5006 9.817809 GTATAAAGTTGAGTCATCTATTGTGGA 57.182 33.333 4.14 0.0 0.00 4.02
2921 5007 9.823647 AGTATAAAGTTGAGTCATCTATTGTGG 57.176 33.333 4.14 0.0 0.00 4.17
2953 5039 9.850198 ACCCAACTTTGTACTAACTTTGTATTA 57.150 29.630 0.00 0.0 0.00 0.98
2954 5040 8.756486 ACCCAACTTTGTACTAACTTTGTATT 57.244 30.769 0.00 0.0 0.00 1.89
2955 5041 7.994334 TGACCCAACTTTGTACTAACTTTGTAT 59.006 33.333 0.00 0.0 0.00 2.29
2956 5042 7.337167 TGACCCAACTTTGTACTAACTTTGTA 58.663 34.615 0.00 0.0 0.00 2.41
2957 5043 6.181908 TGACCCAACTTTGTACTAACTTTGT 58.818 36.000 0.00 0.0 0.00 2.83
2958 5044 6.687081 TGACCCAACTTTGTACTAACTTTG 57.313 37.500 0.00 0.0 0.00 2.77
2959 5045 7.891498 AATGACCCAACTTTGTACTAACTTT 57.109 32.000 0.00 0.0 0.00 2.66
2960 5046 7.891498 AAATGACCCAACTTTGTACTAACTT 57.109 32.000 0.00 0.0 0.00 2.66
2961 5047 9.582648 AATAAATGACCCAACTTTGTACTAACT 57.417 29.630 0.00 0.0 0.00 2.24
2970 5056 9.942850 CCATTCTAAAATAAATGACCCAACTTT 57.057 29.630 0.00 0.0 35.35 2.66
2971 5057 9.320295 TCCATTCTAAAATAAATGACCCAACTT 57.680 29.630 0.00 0.0 35.35 2.66
2972 5058 8.893563 TCCATTCTAAAATAAATGACCCAACT 57.106 30.769 0.00 0.0 35.35 3.16
2973 5059 8.197439 CCTCCATTCTAAAATAAATGACCCAAC 58.803 37.037 0.00 0.0 35.35 3.77
2974 5060 7.344352 CCCTCCATTCTAAAATAAATGACCCAA 59.656 37.037 0.00 0.0 35.35 4.12
2975 5061 6.838612 CCCTCCATTCTAAAATAAATGACCCA 59.161 38.462 0.00 0.0 35.35 4.51
2976 5062 7.066781 TCCCTCCATTCTAAAATAAATGACCC 58.933 38.462 0.00 0.0 35.35 4.46
2977 5063 7.780271 ACTCCCTCCATTCTAAAATAAATGACC 59.220 37.037 0.00 0.0 35.35 4.02
2978 5064 8.753497 ACTCCCTCCATTCTAAAATAAATGAC 57.247 34.615 0.00 0.0 35.35 3.06
2982 5068 9.681062 CAGTTACTCCCTCCATTCTAAAATAAA 57.319 33.333 0.00 0.0 0.00 1.40
2983 5069 7.773690 GCAGTTACTCCCTCCATTCTAAAATAA 59.226 37.037 0.00 0.0 0.00 1.40
2984 5070 7.127339 AGCAGTTACTCCCTCCATTCTAAAATA 59.873 37.037 0.00 0.0 0.00 1.40
2985 5071 6.069381 AGCAGTTACTCCCTCCATTCTAAAAT 60.069 38.462 0.00 0.0 0.00 1.82
2986 5072 5.250774 AGCAGTTACTCCCTCCATTCTAAAA 59.749 40.000 0.00 0.0 0.00 1.52
2987 5073 4.783227 AGCAGTTACTCCCTCCATTCTAAA 59.217 41.667 0.00 0.0 0.00 1.85
2988 5074 4.362677 AGCAGTTACTCCCTCCATTCTAA 58.637 43.478 0.00 0.0 0.00 2.10
2989 5075 3.995636 AGCAGTTACTCCCTCCATTCTA 58.004 45.455 0.00 0.0 0.00 2.10
2990 5076 2.839228 AGCAGTTACTCCCTCCATTCT 58.161 47.619 0.00 0.0 0.00 2.40
2991 5077 4.755266 TTAGCAGTTACTCCCTCCATTC 57.245 45.455 0.00 0.0 0.00 2.67
2992 5078 4.202264 CGATTAGCAGTTACTCCCTCCATT 60.202 45.833 0.00 0.0 0.00 3.16
2993 5079 3.322254 CGATTAGCAGTTACTCCCTCCAT 59.678 47.826 0.00 0.0 0.00 3.41
2994 5080 2.693591 CGATTAGCAGTTACTCCCTCCA 59.306 50.000 0.00 0.0 0.00 3.86
2995 5081 2.694109 ACGATTAGCAGTTACTCCCTCC 59.306 50.000 0.00 0.0 0.00 4.30
2996 5082 4.388378 AACGATTAGCAGTTACTCCCTC 57.612 45.455 0.00 0.0 0.00 4.30
2997 5083 4.820894 AAACGATTAGCAGTTACTCCCT 57.179 40.909 0.00 0.0 0.00 4.20
2998 5084 4.933400 TCAAAACGATTAGCAGTTACTCCC 59.067 41.667 0.00 0.0 0.00 4.30
2999 5085 6.663944 ATCAAAACGATTAGCAGTTACTCC 57.336 37.500 0.00 0.0 0.00 3.85
3000 5086 8.181487 TGTATCAAAACGATTAGCAGTTACTC 57.819 34.615 0.00 0.0 35.39 2.59
3001 5087 8.542497 TTGTATCAAAACGATTAGCAGTTACT 57.458 30.769 0.00 0.0 35.39 2.24
3002 5088 9.769093 ATTTGTATCAAAACGATTAGCAGTTAC 57.231 29.630 0.00 0.0 35.39 2.50
3039 5220 2.412847 GCACGCGCTAAAGAAAACTCAT 60.413 45.455 5.73 0.0 34.30 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.