Multiple sequence alignment - TraesCS7D01G398600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G398600 chr7D 100.000 3312 0 0 3737 7048 514898486 514895175 0.000000e+00 6117.0
1 TraesCS7D01G398600 chr7D 93.728 3348 121 26 3742 7046 610482558 610485859 0.000000e+00 4937.0
2 TraesCS7D01G398600 chr7D 100.000 2449 0 0 719 3167 514901504 514899056 0.000000e+00 4523.0
3 TraesCS7D01G398600 chr7D 94.993 2257 91 13 917 3167 610479942 610482182 0.000000e+00 3522.0
4 TraesCS7D01G398600 chr7D 94.434 2084 78 13 918 2992 608208830 608206776 0.000000e+00 3171.0
5 TraesCS7D01G398600 chr7D 100.000 1323 0 0 7251 8573 514894972 514893650 0.000000e+00 2444.0
6 TraesCS7D01G398600 chr7D 87.900 1405 133 14 3737 5122 608206177 608204791 0.000000e+00 1618.0
7 TraesCS7D01G398600 chr7D 94.481 906 35 6 7251 8147 610485924 610486823 0.000000e+00 1382.0
8 TraesCS7D01G398600 chr7D 93.116 828 36 12 5412 6225 608204510 608203690 0.000000e+00 1194.0
9 TraesCS7D01G398600 chr7D 89.911 783 45 11 7251 8003 608202897 608202119 0.000000e+00 977.0
10 TraesCS7D01G398600 chr7D 92.703 603 34 7 6437 7036 608203646 608203051 0.000000e+00 861.0
11 TraesCS7D01G398600 chr7D 100.000 417 0 0 1 417 514902222 514901806 0.000000e+00 771.0
12 TraesCS7D01G398600 chr7D 91.910 445 25 4 8138 8571 610487231 610487675 5.690000e-171 612.0
13 TraesCS7D01G398600 chr7D 94.819 193 9 1 25 216 433896568 433896376 5.030000e-77 300.0
14 TraesCS7D01G398600 chr7D 95.263 190 7 2 30 218 605142730 605142918 5.030000e-77 300.0
15 TraesCS7D01G398600 chr7D 86.250 160 5 3 765 923 608209071 608208928 3.200000e-34 158.0
16 TraesCS7D01G398600 chr7D 84.459 148 7 5 286 417 608209302 608209155 1.940000e-26 132.0
17 TraesCS7D01G398600 chr7D 94.231 52 3 0 2889 2940 514899138 514899087 7.130000e-11 80.5
18 TraesCS7D01G398600 chr7D 94.231 52 3 0 3085 3136 514899334 514899283 7.130000e-11 80.5
19 TraesCS7D01G398600 chr7B 93.662 3329 157 23 3746 7046 694447816 694444514 0.000000e+00 4929.0
20 TraesCS7D01G398600 chr7B 93.664 2178 94 17 918 3081 699194729 699192582 0.000000e+00 3217.0
21 TraesCS7D01G398600 chr7B 92.757 1643 84 23 5412 7036 699190562 699188937 0.000000e+00 2342.0
22 TraesCS7D01G398600 chr7B 92.524 1458 67 13 1313 2763 694497573 694498995 0.000000e+00 2050.0
23 TraesCS7D01G398600 chr7B 88.185 1405 135 19 3737 5122 699192235 699190843 0.000000e+00 1646.0
24 TraesCS7D01G398600 chr7B 89.482 1236 103 19 1723 2950 697285348 697286564 0.000000e+00 1537.0
25 TraesCS7D01G398600 chr7B 91.416 932 64 9 7650 8568 699188433 699187505 0.000000e+00 1264.0
26 TraesCS7D01G398600 chr7B 86.616 523 52 14 1019 1538 697284013 697284520 5.810000e-156 562.0
27 TraesCS7D01G398600 chr7B 93.314 344 20 2 2761 3104 694449130 694448790 9.930000e-139 505.0
28 TraesCS7D01G398600 chr7B 89.516 372 27 4 7251 7616 699188799 699188434 2.180000e-125 460.0
29 TraesCS7D01G398600 chr7B 93.238 281 19 0 7251 7531 694444449 694444169 1.720000e-111 414.0
30 TraesCS7D01G398600 chr7B 92.135 267 16 3 989 1252 693289758 693290022 1.050000e-98 372.0
31 TraesCS7D01G398600 chr7B 88.073 218 7 3 725 929 699195002 699194791 3.090000e-59 241.0
32 TraesCS7D01G398600 chr7B 92.258 155 7 1 765 919 694521676 694521527 1.870000e-51 215.0
33 TraesCS7D01G398600 chr7B 98.529 68 1 0 3100 3167 694448528 694448461 4.200000e-23 121.0
34 TraesCS7D01G398600 chr7B 83.654 104 8 7 286 386 694521899 694521802 1.190000e-13 89.8
35 TraesCS7D01G398600 chr7B 96.154 52 2 0 3085 3136 699192774 699192723 1.530000e-12 86.1
36 TraesCS7D01G398600 chr7B 100.000 34 0 0 3134 3167 699192581 699192548 7.180000e-06 63.9
37 TraesCS7D01G398600 chr7B 100.000 28 0 0 3140 3167 699192582 699192609 1.600000e-02 52.8
38 TraesCS7D01G398600 chrUn 92.713 3266 161 37 3805 7036 77506319 77503097 0.000000e+00 4641.0
39 TraesCS7D01G398600 chrUn 91.950 1615 92 23 5412 7005 77467131 77465534 0.000000e+00 2228.0
40 TraesCS7D01G398600 chrUn 94.800 1250 52 8 1521 2767 77470873 77469634 0.000000e+00 1936.0
41 TraesCS7D01G398600 chrUn 92.474 1342 68 11 7251 8573 77503023 77501696 0.000000e+00 1888.0
42 TraesCS7D01G398600 chrUn 90.896 1362 72 20 922 2272 77510131 77508811 0.000000e+00 1781.0
43 TraesCS7D01G398600 chrUn 89.103 1349 104 17 7251 8568 77465405 77464069 0.000000e+00 1637.0
44 TraesCS7D01G398600 chrUn 96.277 591 17 4 2580 3167 77507367 77506779 0.000000e+00 965.0
45 TraesCS7D01G398600 chrUn 88.717 647 71 2 4478 5122 77468067 77467421 0.000000e+00 789.0
46 TraesCS7D01G398600 chrUn 92.647 544 25 7 924 1458 77471410 77470873 0.000000e+00 769.0
47 TraesCS7D01G398600 chrUn 88.676 521 50 6 3737 4253 77468597 77468082 2.030000e-175 627.0
48 TraesCS7D01G398600 chrUn 93.448 290 19 0 2792 3081 77469640 77469351 1.710000e-116 431.0
49 TraesCS7D01G398600 chrUn 95.146 206 9 1 719 923 77471716 77471511 2.980000e-84 324.0
50 TraesCS7D01G398600 chrUn 95.238 189 8 1 28 215 51492864 51492676 1.810000e-76 298.0
51 TraesCS7D01G398600 chrUn 95.238 189 8 1 28 215 348959158 348959346 1.810000e-76 298.0
52 TraesCS7D01G398600 chrUn 94.681 94 5 0 264 357 77471878 77471785 6.930000e-31 147.0
53 TraesCS7D01G398600 chrUn 94.681 94 5 0 264 357 77510595 77510502 6.930000e-31 147.0
54 TraesCS7D01G398600 chrUn 83.704 135 6 8 766 900 77510369 77510251 7.030000e-21 113.0
55 TraesCS7D01G398600 chrUn 96.154 52 2 0 3085 3136 77469543 77469492 1.530000e-12 86.1
56 TraesCS7D01G398600 chrUn 94.231 52 3 0 2889 2940 77506863 77506812 7.130000e-11 80.5
57 TraesCS7D01G398600 chrUn 97.059 34 1 0 3134 3167 77469350 77469317 3.340000e-04 58.4
58 TraesCS7D01G398600 chrUn 100.000 28 0 0 3140 3167 77469351 77469378 1.600000e-02 52.8
59 TraesCS7D01G398600 chr4A 93.115 2600 147 13 4454 7046 662075410 662077984 0.000000e+00 3781.0
60 TraesCS7D01G398600 chr4A 94.312 1758 92 7 1413 3167 662072299 662074051 0.000000e+00 2686.0
61 TraesCS7D01G398600 chr4A 92.336 1344 71 11 7251 8573 662078049 662079381 0.000000e+00 1882.0
62 TraesCS7D01G398600 chr4A 93.605 688 28 9 3759 4441 662074545 662075221 0.000000e+00 1013.0
63 TraesCS7D01G398600 chr4A 92.896 183 12 1 719 900 662070649 662070831 1.830000e-66 265.0
64 TraesCS7D01G398600 chr4A 97.333 75 2 0 274 348 662058974 662059048 2.510000e-25 128.0
65 TraesCS7D01G398600 chr4A 85.542 83 4 1 3085 3167 662073772 662073846 7.130000e-11 80.5
66 TraesCS7D01G398600 chr7A 93.091 2562 134 26 4475 7011 700265579 700263036 0.000000e+00 3711.0
67 TraesCS7D01G398600 chr7A 93.129 2183 81 25 725 2895 700286997 700284872 0.000000e+00 3136.0
68 TraesCS7D01G398600 chr7A 94.271 1885 84 8 1130 3013 700329136 700327275 0.000000e+00 2861.0
69 TraesCS7D01G398600 chr7A 91.392 1487 100 17 5474 6948 700279862 700278392 0.000000e+00 2012.0
70 TraesCS7D01G398600 chr7A 91.135 1489 104 17 5474 6950 700284173 700282701 0.000000e+00 1993.0
71 TraesCS7D01G398600 chr7A 90.648 1358 84 13 7251 8569 700262327 700260974 0.000000e+00 1764.0
72 TraesCS7D01G398600 chr7A 90.299 1340 83 24 7272 8571 700278330 700276998 0.000000e+00 1711.0
73 TraesCS7D01G398600 chr7A 90.299 1340 83 19 7272 8571 700282641 700281309 0.000000e+00 1711.0
74 TraesCS7D01G398600 chr7A 82.609 1081 119 36 7512 8560 699908844 699909887 0.000000e+00 891.0
75 TraesCS7D01G398600 chr7A 86.649 749 33 17 725 1462 700329834 700329142 0.000000e+00 767.0
76 TraesCS7D01G398600 chr7A 91.042 480 27 3 3957 4434 700266207 700265742 1.210000e-177 634.0
77 TraesCS7D01G398600 chr7A 86.894 557 48 17 928 1475 699900808 699901348 1.230000e-167 601.0
78 TraesCS7D01G398600 chr7A 86.555 476 52 11 3737 4205 699903458 699903928 1.650000e-141 514.0
79 TraesCS7D01G398600 chr7A 85.106 141 16 5 7272 7407 699908649 699908789 1.160000e-28 139.0
80 TraesCS7D01G398600 chr5D 94.924 197 7 3 23 216 149772587 149772391 1.080000e-78 305.0
81 TraesCS7D01G398600 chr5D 94.792 192 8 2 30 220 333980386 333980196 1.810000e-76 298.0
82 TraesCS7D01G398600 chr6A 96.216 185 6 1 29 212 195270146 195270330 1.400000e-77 302.0
83 TraesCS7D01G398600 chr2D 95.238 189 9 0 28 216 205004909 205005097 5.030000e-77 300.0
84 TraesCS7D01G398600 chr3B 95.238 189 7 2 28 214 94280790 94280602 1.810000e-76 298.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G398600 chr7D 514893650 514902222 8572 True 2336.000000 6117 98.077000 1 8573 6 chr7D.!!$R2 8572
1 TraesCS7D01G398600 chr7D 610479942 610487675 7733 False 2613.250000 4937 93.778000 917 8571 4 chr7D.!!$F2 7654
2 TraesCS7D01G398600 chr7D 608202119 608209302 7183 True 1158.714286 3171 89.824714 286 8003 7 chr7D.!!$R3 7717
3 TraesCS7D01G398600 chr7B 694497573 694498995 1422 False 2050.000000 2050 92.524000 1313 2763 1 chr7B.!!$F2 1450
4 TraesCS7D01G398600 chr7B 694444169 694449130 4961 True 1492.250000 4929 94.685750 2761 7531 4 chr7B.!!$R1 4770
5 TraesCS7D01G398600 chr7B 699187505 699195002 7497 True 1165.000000 3217 92.470625 725 8568 8 chr7B.!!$R3 7843
6 TraesCS7D01G398600 chr7B 697284013 697286564 2551 False 1049.500000 1537 88.049000 1019 2950 2 chr7B.!!$F4 1931
7 TraesCS7D01G398600 chrUn 77501696 77510595 8899 True 1373.642857 4641 92.139429 264 8573 7 chrUn.!!$R3 8309
8 TraesCS7D01G398600 chrUn 77464069 77471878 7809 True 821.136364 2228 92.943727 264 8568 11 chrUn.!!$R2 8304
9 TraesCS7D01G398600 chr4A 662070649 662079381 8732 False 1617.916667 3781 91.967667 719 8573 6 chr4A.!!$F2 7854
10 TraesCS7D01G398600 chr7A 700276998 700286997 9999 True 2112.600000 3136 91.250800 725 8571 5 chr7A.!!$R2 7846
11 TraesCS7D01G398600 chr7A 700260974 700266207 5233 True 2036.333333 3711 91.593667 3957 8569 3 chr7A.!!$R1 4612
12 TraesCS7D01G398600 chr7A 700327275 700329834 2559 True 1814.000000 2861 90.460000 725 3013 2 chr7A.!!$R3 2288
13 TraesCS7D01G398600 chr7A 699900808 699903928 3120 False 557.500000 601 86.724500 928 4205 2 chr7A.!!$F1 3277
14 TraesCS7D01G398600 chr7A 699908649 699909887 1238 False 515.000000 891 83.857500 7272 8560 2 chr7A.!!$F2 1288

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
240 241 0.104672 TTCCACCCTCACTCCCTTCA 60.105 55.000 0.00 0.0 0.00 3.02 F
267 268 0.636647 AAAATGATGGGGGAGGGGTC 59.363 55.000 0.00 0.0 0.00 4.46 F
1403 2391 1.067060 TCGCCTCGATCTGTTGGTATG 59.933 52.381 0.00 0.0 0.00 2.39 F
1404 2392 1.202417 CGCCTCGATCTGTTGGTATGT 60.202 52.381 0.00 0.0 0.00 2.29 F
1408 2396 1.552792 TCGATCTGTTGGTATGTGCCA 59.447 47.619 0.00 0.0 36.62 4.92 F
1409 2397 1.665679 CGATCTGTTGGTATGTGCCAC 59.334 52.381 0.00 0.0 38.42 5.01 F
1699 3932 1.676006 CCATTCGGGTTCATAAGGCAC 59.324 52.381 0.00 0.0 0.00 5.01 F
1911 4144 1.679680 CCCAAGGTGCTTGCTGATATG 59.320 52.381 0.00 0.0 39.85 1.78 F
2449 4807 1.984026 GGCACTTGTTGGGATGGGG 60.984 63.158 0.00 0.0 0.00 4.96 F
4283 8167 1.494721 ACCACCCACTCACACATCTTT 59.505 47.619 0.00 0.0 0.00 2.52 F
4891 8971 0.321021 CTGCAGTGGAGCTGTTCTCT 59.679 55.000 5.25 0.0 46.64 3.10 F
4961 9042 2.032528 TCGGTGCTTTGGCTGGAG 59.967 61.111 0.00 0.0 39.59 3.86 F
5140 9221 2.224113 GGTTCTGTACGGTGGAGTTTGA 60.224 50.000 0.64 0.0 0.00 2.69 F
6901 15483 0.817013 TTCTGGCCATCCATTTTCGC 59.183 50.000 5.51 0.0 42.51 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1404 2392 0.107703 CCGAGGATGCTTAAGTGGCA 60.108 55.000 4.02 0.0 44.05 4.92 R
1405 2393 0.178068 TCCGAGGATGCTTAAGTGGC 59.822 55.000 4.02 0.0 0.00 5.01 R
2449 4807 3.551863 CGATTACCATCTGCTCTGAGGAC 60.552 52.174 6.83 0.0 0.00 3.85 R
2779 6168 5.833131 AGTTCTAAAGATGCCCAGAACAAAA 59.167 36.000 13.89 0.0 45.98 2.44 R
2960 6350 6.989169 GGTTTCTATACTGCATCTGAGTGATT 59.011 38.462 0.00 0.0 32.05 2.57 R
3869 7733 5.027293 ACTTAAGGTGGTGTTTTAGACGT 57.973 39.130 7.53 0.0 0.00 4.34 R
3996 7875 6.552445 AAGATAGTAGATCACTGCAAGGTT 57.448 37.500 0.00 0.0 39.30 3.50 R
4245 8126 0.035820 GTTTCTGTGTATGGCGGGGA 60.036 55.000 0.00 0.0 0.00 4.81 R
4292 8176 0.106519 GGAAGGATGGTGATGGGTGG 60.107 60.000 0.00 0.0 0.00 4.61 R
5305 9411 0.751643 ACAAACCAAGGACTTGCGCT 60.752 50.000 9.73 0.0 39.16 5.92 R
5824 10067 1.490490 GTGCATGGATCCCTAACTCCA 59.510 52.381 9.90 0.0 45.27 3.86 R
6752 15333 1.546029 GTGAACCAAGGCCCAGATTTC 59.454 52.381 0.00 0.0 0.00 2.17 R
7452 16520 2.288334 GCTGATGAATGTTGTGTTGCCA 60.288 45.455 0.00 0.0 0.00 4.92 R
8355 17951 0.108424 CAGCTTCTCAACCTCTCGGG 60.108 60.000 0.00 0.0 41.89 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.609237 ACTCGTTTTGTAAAGGTAAAGGTC 57.391 37.500 0.00 0.00 0.00 3.85
24 25 6.114767 ACTCGTTTTGTAAAGGTAAAGGTCA 58.885 36.000 0.00 0.00 0.00 4.02
25 26 6.598850 ACTCGTTTTGTAAAGGTAAAGGTCAA 59.401 34.615 0.00 0.00 0.00 3.18
26 27 6.784176 TCGTTTTGTAAAGGTAAAGGTCAAC 58.216 36.000 0.00 0.00 0.00 3.18
27 28 6.598850 TCGTTTTGTAAAGGTAAAGGTCAACT 59.401 34.615 0.00 0.00 0.00 3.16
28 29 7.121020 TCGTTTTGTAAAGGTAAAGGTCAACTT 59.879 33.333 0.00 0.00 42.52 2.66
29 30 8.397148 CGTTTTGTAAAGGTAAAGGTCAACTTA 58.603 33.333 0.00 0.00 38.85 2.24
30 31 9.726232 GTTTTGTAAAGGTAAAGGTCAACTTAG 57.274 33.333 0.00 0.00 38.85 2.18
31 32 8.454570 TTTGTAAAGGTAAAGGTCAACTTAGG 57.545 34.615 0.00 0.00 38.85 2.69
32 33 7.140522 TGTAAAGGTAAAGGTCAACTTAGGT 57.859 36.000 0.00 0.00 38.85 3.08
33 34 6.993902 TGTAAAGGTAAAGGTCAACTTAGGTG 59.006 38.462 0.00 0.00 38.85 4.00
34 35 4.635699 AGGTAAAGGTCAACTTAGGTGG 57.364 45.455 0.00 0.00 38.85 4.61
35 36 3.978672 AGGTAAAGGTCAACTTAGGTGGT 59.021 43.478 0.00 0.00 38.85 4.16
36 37 4.070009 GGTAAAGGTCAACTTAGGTGGTG 58.930 47.826 0.00 0.00 38.85 4.17
37 38 3.945640 AAAGGTCAACTTAGGTGGTGT 57.054 42.857 0.00 0.00 38.85 4.16
38 39 3.945640 AAGGTCAACTTAGGTGGTGTT 57.054 42.857 0.00 0.00 37.74 3.32
39 40 3.945640 AGGTCAACTTAGGTGGTGTTT 57.054 42.857 0.00 0.00 0.00 2.83
40 41 3.551846 AGGTCAACTTAGGTGGTGTTTG 58.448 45.455 0.00 0.00 0.00 2.93
41 42 2.621526 GGTCAACTTAGGTGGTGTTTGG 59.378 50.000 0.00 0.00 0.00 3.28
42 43 3.284617 GTCAACTTAGGTGGTGTTTGGT 58.715 45.455 0.00 0.00 0.00 3.67
43 44 3.697542 GTCAACTTAGGTGGTGTTTGGTT 59.302 43.478 0.00 0.00 0.00 3.67
44 45 3.949113 TCAACTTAGGTGGTGTTTGGTTC 59.051 43.478 0.00 0.00 0.00 3.62
45 46 3.945640 ACTTAGGTGGTGTTTGGTTCT 57.054 42.857 0.00 0.00 0.00 3.01
46 47 3.816994 ACTTAGGTGGTGTTTGGTTCTC 58.183 45.455 0.00 0.00 0.00 2.87
47 48 3.458487 ACTTAGGTGGTGTTTGGTTCTCT 59.542 43.478 0.00 0.00 0.00 3.10
48 49 4.657039 ACTTAGGTGGTGTTTGGTTCTCTA 59.343 41.667 0.00 0.00 0.00 2.43
49 50 3.771577 AGGTGGTGTTTGGTTCTCTAG 57.228 47.619 0.00 0.00 0.00 2.43
50 51 3.046374 AGGTGGTGTTTGGTTCTCTAGT 58.954 45.455 0.00 0.00 0.00 2.57
51 52 3.071167 AGGTGGTGTTTGGTTCTCTAGTC 59.929 47.826 0.00 0.00 0.00 2.59
52 53 3.400255 GTGGTGTTTGGTTCTCTAGTCC 58.600 50.000 0.00 0.00 0.00 3.85
53 54 3.071167 GTGGTGTTTGGTTCTCTAGTCCT 59.929 47.826 0.00 0.00 0.00 3.85
54 55 4.282703 GTGGTGTTTGGTTCTCTAGTCCTA 59.717 45.833 0.00 0.00 0.00 2.94
55 56 4.527038 TGGTGTTTGGTTCTCTAGTCCTAG 59.473 45.833 0.00 0.00 34.56 3.02
56 57 4.081586 GGTGTTTGGTTCTCTAGTCCTAGG 60.082 50.000 0.82 0.82 34.06 3.02
57 58 4.771054 GTGTTTGGTTCTCTAGTCCTAGGA 59.229 45.833 7.62 7.62 34.06 2.94
58 59 4.771054 TGTTTGGTTCTCTAGTCCTAGGAC 59.229 45.833 31.29 31.29 44.86 3.85
91 92 6.954487 TCCCTAGGACTTTTTGAAAAAGAC 57.046 37.500 30.55 24.86 0.00 3.01
92 93 6.669631 TCCCTAGGACTTTTTGAAAAAGACT 58.330 36.000 30.55 26.69 0.00 3.24
93 94 6.771267 TCCCTAGGACTTTTTGAAAAAGACTC 59.229 38.462 30.55 20.15 0.00 3.36
94 95 6.773200 CCCTAGGACTTTTTGAAAAAGACTCT 59.227 38.462 30.55 23.56 0.00 3.24
95 96 7.041030 CCCTAGGACTTTTTGAAAAAGACTCTC 60.041 40.741 30.55 19.27 0.00 3.20
96 97 7.499232 CCTAGGACTTTTTGAAAAAGACTCTCA 59.501 37.037 30.55 14.91 0.00 3.27
97 98 7.703058 AGGACTTTTTGAAAAAGACTCTCAA 57.297 32.000 30.55 0.00 0.00 3.02
98 99 7.766283 AGGACTTTTTGAAAAAGACTCTCAAG 58.234 34.615 30.55 7.82 31.11 3.02
99 100 6.975197 GGACTTTTTGAAAAAGACTCTCAAGG 59.025 38.462 30.55 7.27 31.11 3.61
100 101 7.148069 GGACTTTTTGAAAAAGACTCTCAAGGA 60.148 37.037 30.55 0.00 31.11 3.36
101 102 7.766283 ACTTTTTGAAAAAGACTCTCAAGGAG 58.234 34.615 30.55 6.52 46.87 3.69
102 103 6.699575 TTTTGAAAAAGACTCTCAAGGAGG 57.300 37.500 0.00 0.00 45.83 4.30
103 104 5.373812 TTGAAAAAGACTCTCAAGGAGGT 57.626 39.130 0.00 0.00 45.83 3.85
104 105 4.708177 TGAAAAAGACTCTCAAGGAGGTG 58.292 43.478 0.00 0.00 45.83 4.00
105 106 2.849294 AAAGACTCTCAAGGAGGTGC 57.151 50.000 0.00 0.00 45.83 5.01
106 107 2.022718 AAGACTCTCAAGGAGGTGCT 57.977 50.000 0.00 0.00 45.83 4.40
107 108 2.022718 AGACTCTCAAGGAGGTGCTT 57.977 50.000 0.00 0.00 45.83 3.91
108 109 1.899142 AGACTCTCAAGGAGGTGCTTC 59.101 52.381 0.00 0.00 45.83 3.86
109 110 1.899142 GACTCTCAAGGAGGTGCTTCT 59.101 52.381 0.00 0.00 45.83 2.85
110 111 3.093057 GACTCTCAAGGAGGTGCTTCTA 58.907 50.000 0.00 0.00 45.83 2.10
111 112 3.511477 ACTCTCAAGGAGGTGCTTCTAA 58.489 45.455 0.00 0.00 45.83 2.10
112 113 3.513515 ACTCTCAAGGAGGTGCTTCTAAG 59.486 47.826 0.00 0.00 45.83 2.18
113 114 2.834549 TCTCAAGGAGGTGCTTCTAAGG 59.165 50.000 0.00 0.00 0.00 2.69
114 115 2.834549 CTCAAGGAGGTGCTTCTAAGGA 59.165 50.000 0.00 0.00 0.00 3.36
115 116 2.567615 TCAAGGAGGTGCTTCTAAGGAC 59.432 50.000 5.86 5.86 45.39 3.85
116 117 2.569404 CAAGGAGGTGCTTCTAAGGACT 59.431 50.000 13.12 1.24 45.42 3.85
117 118 2.909217 AGGAGGTGCTTCTAAGGACTT 58.091 47.619 13.12 6.52 45.42 3.01
118 119 3.252351 AGGAGGTGCTTCTAAGGACTTT 58.748 45.455 13.12 3.63 45.42 2.66
119 120 3.653352 AGGAGGTGCTTCTAAGGACTTTT 59.347 43.478 13.12 1.47 45.42 2.27
120 121 4.844655 AGGAGGTGCTTCTAAGGACTTTTA 59.155 41.667 13.12 0.00 45.42 1.52
121 122 5.309806 AGGAGGTGCTTCTAAGGACTTTTAA 59.690 40.000 13.12 0.00 45.42 1.52
122 123 5.411977 GGAGGTGCTTCTAAGGACTTTTAAC 59.588 44.000 13.12 0.00 45.42 2.01
123 124 5.937111 AGGTGCTTCTAAGGACTTTTAACA 58.063 37.500 13.12 0.00 45.42 2.41
124 125 6.362248 AGGTGCTTCTAAGGACTTTTAACAA 58.638 36.000 13.12 0.00 45.42 2.83
125 126 6.831868 AGGTGCTTCTAAGGACTTTTAACAAA 59.168 34.615 13.12 0.00 45.42 2.83
126 127 7.340999 AGGTGCTTCTAAGGACTTTTAACAAAA 59.659 33.333 13.12 0.00 45.42 2.44
127 128 7.977293 GGTGCTTCTAAGGACTTTTAACAAAAA 59.023 33.333 13.12 0.00 45.42 1.94
128 129 9.020813 GTGCTTCTAAGGACTTTTAACAAAAAG 57.979 33.333 7.07 8.64 43.15 2.27
154 155 3.328535 AAAAGTCCCATCCTGTTTGGT 57.671 42.857 0.00 0.00 37.07 3.67
155 156 3.328535 AAAGTCCCATCCTGTTTGGTT 57.671 42.857 0.00 0.00 37.07 3.67
156 157 3.328535 AAGTCCCATCCTGTTTGGTTT 57.671 42.857 0.00 0.00 37.07 3.27
157 158 4.463050 AAGTCCCATCCTGTTTGGTTTA 57.537 40.909 0.00 0.00 37.07 2.01
158 159 3.763057 AGTCCCATCCTGTTTGGTTTAC 58.237 45.455 0.00 0.00 37.07 2.01
159 160 3.397955 AGTCCCATCCTGTTTGGTTTACT 59.602 43.478 0.00 0.00 37.07 2.24
160 161 4.600111 AGTCCCATCCTGTTTGGTTTACTA 59.400 41.667 0.00 0.00 37.07 1.82
161 162 4.941873 GTCCCATCCTGTTTGGTTTACTAG 59.058 45.833 0.00 0.00 37.07 2.57
162 163 4.018779 TCCCATCCTGTTTGGTTTACTAGG 60.019 45.833 0.00 0.00 37.07 3.02
163 164 4.018779 CCCATCCTGTTTGGTTTACTAGGA 60.019 45.833 0.00 0.00 38.56 2.94
164 165 5.515886 CCCATCCTGTTTGGTTTACTAGGAA 60.516 44.000 0.00 0.00 37.81 3.36
165 166 5.414765 CCATCCTGTTTGGTTTACTAGGAAC 59.585 44.000 0.00 0.00 37.81 3.62
166 167 5.899631 TCCTGTTTGGTTTACTAGGAACT 57.100 39.130 10.03 0.00 38.94 3.01
167 168 6.256643 TCCTGTTTGGTTTACTAGGAACTT 57.743 37.500 10.03 0.00 37.15 2.66
168 169 6.665695 TCCTGTTTGGTTTACTAGGAACTTT 58.334 36.000 10.03 0.00 37.15 2.66
169 170 7.120716 TCCTGTTTGGTTTACTAGGAACTTTT 58.879 34.615 10.03 0.00 37.15 2.27
170 171 7.616542 TCCTGTTTGGTTTACTAGGAACTTTTT 59.383 33.333 10.03 0.00 37.15 1.94
171 172 7.919091 CCTGTTTGGTTTACTAGGAACTTTTTC 59.081 37.037 10.03 0.00 41.75 2.29
172 173 8.584063 TGTTTGGTTTACTAGGAACTTTTTCT 57.416 30.769 10.03 0.00 41.75 2.52
173 174 9.683870 TGTTTGGTTTACTAGGAACTTTTTCTA 57.316 29.630 10.03 0.00 41.75 2.10
175 176 9.910267 TTTGGTTTACTAGGAACTTTTTCTAGT 57.090 29.630 10.95 10.95 41.75 2.57
176 177 9.551734 TTGGTTTACTAGGAACTTTTTCTAGTC 57.448 33.333 9.71 0.00 41.75 2.59
177 178 8.152898 TGGTTTACTAGGAACTTTTTCTAGTCC 58.847 37.037 9.71 6.83 41.75 3.85
178 179 7.605691 GGTTTACTAGGAACTTTTTCTAGTCCC 59.394 40.741 9.71 6.19 41.75 4.46
179 180 7.860649 TTACTAGGAACTTTTTCTAGTCCCA 57.139 36.000 9.71 0.00 41.75 4.37
180 181 6.758806 ACTAGGAACTTTTTCTAGTCCCAA 57.241 37.500 1.58 0.00 41.75 4.12
181 182 6.531923 ACTAGGAACTTTTTCTAGTCCCAAC 58.468 40.000 1.58 0.00 41.75 3.77
182 183 5.382664 AGGAACTTTTTCTAGTCCCAACA 57.617 39.130 0.00 0.00 27.25 3.33
183 184 5.131067 AGGAACTTTTTCTAGTCCCAACAC 58.869 41.667 0.00 0.00 27.25 3.32
184 185 4.885325 GGAACTTTTTCTAGTCCCAACACA 59.115 41.667 0.00 0.00 31.71 3.72
185 186 5.358725 GGAACTTTTTCTAGTCCCAACACAA 59.641 40.000 0.00 0.00 31.71 3.33
186 187 6.127563 GGAACTTTTTCTAGTCCCAACACAAA 60.128 38.462 0.00 0.00 31.71 2.83
187 188 6.844097 ACTTTTTCTAGTCCCAACACAAAA 57.156 33.333 0.00 0.00 0.00 2.44
188 189 7.234661 ACTTTTTCTAGTCCCAACACAAAAA 57.765 32.000 0.00 0.00 0.00 1.94
207 208 4.465632 AAAAGTCCCTGAAACCAAACAC 57.534 40.909 0.00 0.00 0.00 3.32
208 209 2.067365 AGTCCCTGAAACCAAACACC 57.933 50.000 0.00 0.00 0.00 4.16
209 210 1.569072 AGTCCCTGAAACCAAACACCT 59.431 47.619 0.00 0.00 0.00 4.00
210 211 1.954382 GTCCCTGAAACCAAACACCTC 59.046 52.381 0.00 0.00 0.00 3.85
211 212 1.133606 TCCCTGAAACCAAACACCTCC 60.134 52.381 0.00 0.00 0.00 4.30
212 213 1.133482 CCCTGAAACCAAACACCTCCT 60.133 52.381 0.00 0.00 0.00 3.69
213 214 2.666317 CCTGAAACCAAACACCTCCTT 58.334 47.619 0.00 0.00 0.00 3.36
214 215 3.435890 CCCTGAAACCAAACACCTCCTTA 60.436 47.826 0.00 0.00 0.00 2.69
215 216 4.211920 CCTGAAACCAAACACCTCCTTAA 58.788 43.478 0.00 0.00 0.00 1.85
216 217 4.037565 CCTGAAACCAAACACCTCCTTAAC 59.962 45.833 0.00 0.00 0.00 2.01
217 218 4.862371 TGAAACCAAACACCTCCTTAACT 58.138 39.130 0.00 0.00 0.00 2.24
218 219 5.265989 TGAAACCAAACACCTCCTTAACTT 58.734 37.500 0.00 0.00 0.00 2.66
219 220 6.424883 TGAAACCAAACACCTCCTTAACTTA 58.575 36.000 0.00 0.00 0.00 2.24
220 221 7.064229 TGAAACCAAACACCTCCTTAACTTAT 58.936 34.615 0.00 0.00 0.00 1.73
221 222 7.562088 TGAAACCAAACACCTCCTTAACTTATT 59.438 33.333 0.00 0.00 0.00 1.40
222 223 7.907841 AACCAAACACCTCCTTAACTTATTT 57.092 32.000 0.00 0.00 0.00 1.40
223 224 7.520451 ACCAAACACCTCCTTAACTTATTTC 57.480 36.000 0.00 0.00 0.00 2.17
224 225 6.492429 ACCAAACACCTCCTTAACTTATTTCC 59.508 38.462 0.00 0.00 0.00 3.13
225 226 6.492087 CCAAACACCTCCTTAACTTATTTCCA 59.508 38.462 0.00 0.00 0.00 3.53
226 227 7.368059 CAAACACCTCCTTAACTTATTTCCAC 58.632 38.462 0.00 0.00 0.00 4.02
227 228 5.567430 ACACCTCCTTAACTTATTTCCACC 58.433 41.667 0.00 0.00 0.00 4.61
228 229 4.948004 CACCTCCTTAACTTATTTCCACCC 59.052 45.833 0.00 0.00 0.00 4.61
229 230 4.856182 ACCTCCTTAACTTATTTCCACCCT 59.144 41.667 0.00 0.00 0.00 4.34
230 231 5.045066 ACCTCCTTAACTTATTTCCACCCTC 60.045 44.000 0.00 0.00 0.00 4.30
231 232 5.045140 CCTCCTTAACTTATTTCCACCCTCA 60.045 44.000 0.00 0.00 0.00 3.86
232 233 5.812286 TCCTTAACTTATTTCCACCCTCAC 58.188 41.667 0.00 0.00 0.00 3.51
233 234 5.550403 TCCTTAACTTATTTCCACCCTCACT 59.450 40.000 0.00 0.00 0.00 3.41
234 235 5.880887 CCTTAACTTATTTCCACCCTCACTC 59.119 44.000 0.00 0.00 0.00 3.51
235 236 4.302559 AACTTATTTCCACCCTCACTCC 57.697 45.455 0.00 0.00 0.00 3.85
236 237 2.576648 ACTTATTTCCACCCTCACTCCC 59.423 50.000 0.00 0.00 0.00 4.30
237 238 2.661176 TATTTCCACCCTCACTCCCT 57.339 50.000 0.00 0.00 0.00 4.20
238 239 1.760405 ATTTCCACCCTCACTCCCTT 58.240 50.000 0.00 0.00 0.00 3.95
239 240 1.064825 TTTCCACCCTCACTCCCTTC 58.935 55.000 0.00 0.00 0.00 3.46
240 241 0.104672 TTCCACCCTCACTCCCTTCA 60.105 55.000 0.00 0.00 0.00 3.02
241 242 0.836400 TCCACCCTCACTCCCTTCAC 60.836 60.000 0.00 0.00 0.00 3.18
242 243 1.127567 CCACCCTCACTCCCTTCACA 61.128 60.000 0.00 0.00 0.00 3.58
243 244 0.764890 CACCCTCACTCCCTTCACAA 59.235 55.000 0.00 0.00 0.00 3.33
244 245 1.352352 CACCCTCACTCCCTTCACAAT 59.648 52.381 0.00 0.00 0.00 2.71
245 246 2.571653 CACCCTCACTCCCTTCACAATA 59.428 50.000 0.00 0.00 0.00 1.90
246 247 2.840651 ACCCTCACTCCCTTCACAATAG 59.159 50.000 0.00 0.00 0.00 1.73
247 248 3.107601 CCCTCACTCCCTTCACAATAGA 58.892 50.000 0.00 0.00 0.00 1.98
248 249 3.519510 CCCTCACTCCCTTCACAATAGAA 59.480 47.826 0.00 0.00 0.00 2.10
249 250 4.019321 CCCTCACTCCCTTCACAATAGAAA 60.019 45.833 0.00 0.00 0.00 2.52
250 251 5.514834 CCCTCACTCCCTTCACAATAGAAAA 60.515 44.000 0.00 0.00 0.00 2.29
251 252 6.003950 CCTCACTCCCTTCACAATAGAAAAA 58.996 40.000 0.00 0.00 0.00 1.94
252 253 6.660949 CCTCACTCCCTTCACAATAGAAAAAT 59.339 38.462 0.00 0.00 0.00 1.82
253 254 7.362401 CCTCACTCCCTTCACAATAGAAAAATG 60.362 40.741 0.00 0.00 0.00 2.32
254 255 7.230747 TCACTCCCTTCACAATAGAAAAATGA 58.769 34.615 0.00 0.00 0.00 2.57
255 256 7.890127 TCACTCCCTTCACAATAGAAAAATGAT 59.110 33.333 0.00 0.00 0.00 2.45
256 257 7.972277 CACTCCCTTCACAATAGAAAAATGATG 59.028 37.037 0.00 0.00 0.00 3.07
257 258 7.123247 ACTCCCTTCACAATAGAAAAATGATGG 59.877 37.037 0.00 0.00 35.44 3.51
258 259 6.576185 CCCTTCACAATAGAAAAATGATGGG 58.424 40.000 8.58 8.58 44.02 4.00
259 260 6.407299 CCCTTCACAATAGAAAAATGATGGGG 60.407 42.308 13.22 6.28 44.96 4.96
260 261 6.407299 CCTTCACAATAGAAAAATGATGGGGG 60.407 42.308 0.00 0.00 33.24 5.40
261 262 5.836705 TCACAATAGAAAAATGATGGGGGA 58.163 37.500 0.00 0.00 0.00 4.81
262 263 5.893255 TCACAATAGAAAAATGATGGGGGAG 59.107 40.000 0.00 0.00 0.00 4.30
263 264 5.069516 CACAATAGAAAAATGATGGGGGAGG 59.930 44.000 0.00 0.00 0.00 4.30
264 265 2.854736 AGAAAAATGATGGGGGAGGG 57.145 50.000 0.00 0.00 0.00 4.30
265 266 1.291939 AGAAAAATGATGGGGGAGGGG 59.708 52.381 0.00 0.00 0.00 4.79
266 267 1.008327 GAAAAATGATGGGGGAGGGGT 59.992 52.381 0.00 0.00 0.00 4.95
267 268 0.636647 AAAATGATGGGGGAGGGGTC 59.363 55.000 0.00 0.00 0.00 4.46
268 269 1.296662 AAATGATGGGGGAGGGGTCC 61.297 60.000 0.00 0.00 0.00 4.46
269 270 2.227928 AATGATGGGGGAGGGGTCCT 62.228 60.000 0.00 0.00 36.03 3.85
270 271 2.044620 GATGGGGGAGGGGTCCTT 59.955 66.667 0.00 0.00 31.76 3.36
271 272 2.044620 ATGGGGGAGGGGTCCTTC 59.955 66.667 0.00 0.00 31.76 3.46
281 282 2.034221 GGTCCTTCCGGCAGCTTT 59.966 61.111 0.00 0.00 0.00 3.51
313 314 1.478654 CGAAGGGGTATGGGGAAATGG 60.479 57.143 0.00 0.00 0.00 3.16
965 1570 1.459539 CCCCCTCCCGATCTAGCAA 60.460 63.158 0.00 0.00 0.00 3.91
966 1571 1.476007 CCCCCTCCCGATCTAGCAAG 61.476 65.000 0.00 0.00 0.00 4.01
971 1576 1.300233 CCCGATCTAGCAAGACGCC 60.300 63.158 0.00 0.00 44.04 5.68
1395 2383 3.496875 CTGCCCTCGCCTCGATCTG 62.497 68.421 0.00 0.00 34.61 2.90
1403 2391 1.067060 TCGCCTCGATCTGTTGGTATG 59.933 52.381 0.00 0.00 0.00 2.39
1404 2392 1.202417 CGCCTCGATCTGTTGGTATGT 60.202 52.381 0.00 0.00 0.00 2.29
1405 2393 2.205074 GCCTCGATCTGTTGGTATGTG 58.795 52.381 0.00 0.00 0.00 3.21
1406 2394 2.205074 CCTCGATCTGTTGGTATGTGC 58.795 52.381 0.00 0.00 0.00 4.57
1407 2395 2.205074 CTCGATCTGTTGGTATGTGCC 58.795 52.381 0.00 0.00 0.00 5.01
1408 2396 1.552792 TCGATCTGTTGGTATGTGCCA 59.447 47.619 0.00 0.00 36.62 4.92
1409 2397 1.665679 CGATCTGTTGGTATGTGCCAC 59.334 52.381 0.00 0.00 38.42 5.01
1410 2398 2.677902 CGATCTGTTGGTATGTGCCACT 60.678 50.000 0.00 0.00 38.42 4.00
1411 2399 2.949177 TCTGTTGGTATGTGCCACTT 57.051 45.000 0.00 0.00 38.42 3.16
1412 2400 4.513442 GATCTGTTGGTATGTGCCACTTA 58.487 43.478 0.00 0.00 38.42 2.24
1413 2401 4.359434 TCTGTTGGTATGTGCCACTTAA 57.641 40.909 0.00 0.00 38.42 1.85
1452 2877 3.906846 CTCCCCTGAGTTAGAAGCCATAT 59.093 47.826 0.00 0.00 33.70 1.78
1593 3825 2.698855 ATAGCAACTCTCGCCACATT 57.301 45.000 0.00 0.00 0.00 2.71
1653 3886 6.573664 ACTGTATTTAGCAATGCTGAAACA 57.426 33.333 19.25 18.74 37.66 2.83
1676 3909 1.875488 ATTGGTAAGTACTCCCGCCT 58.125 50.000 0.00 0.00 0.00 5.52
1699 3932 1.676006 CCATTCGGGTTCATAAGGCAC 59.324 52.381 0.00 0.00 0.00 5.01
1790 4023 5.968254 TCGCTACCATTGTTATGTTACTGA 58.032 37.500 0.00 0.00 0.00 3.41
1911 4144 1.679680 CCCAAGGTGCTTGCTGATATG 59.320 52.381 0.00 0.00 39.85 1.78
1984 4219 5.635120 AGAAGCTCTGGAAGGTTTGTAATT 58.365 37.500 0.00 0.00 45.55 1.40
2131 4369 7.643764 CGTATGATTTCATTTTGGTATGACCAC 59.356 37.037 0.00 0.00 41.83 4.16
2449 4807 1.984026 GGCACTTGTTGGGATGGGG 60.984 63.158 0.00 0.00 0.00 4.96
2903 6293 9.665719 AACTTTTGGTCATTTCTGTTAAACAAT 57.334 25.926 0.00 0.00 0.00 2.71
2960 6350 2.115427 TGGAACAGACTTGTCCAGACA 58.885 47.619 0.00 0.00 36.23 3.41
2979 6369 6.462067 CCAGACAATCACTCAGATGCAGTATA 60.462 42.308 0.00 0.00 36.96 1.47
3096 6487 7.760340 GGTCCAGAACTACTATTTCTGTTACAG 59.240 40.741 5.94 5.94 45.82 2.74
3869 7733 7.394923 TGTCTTTTCAACCTAGAACTCCAAAAA 59.605 33.333 0.00 0.00 0.00 1.94
3882 7746 5.239359 ACTCCAAAAACGTCTAAAACACC 57.761 39.130 0.00 0.00 0.00 4.16
3888 7752 6.404513 CCAAAAACGTCTAAAACACCACCTTA 60.405 38.462 0.00 0.00 0.00 2.69
4242 8123 2.192187 GCCTAGCCTGCTTCATGCC 61.192 63.158 0.00 0.00 42.00 4.40
4245 8126 2.937379 CTAGCCTGCTTCATGCCGCT 62.937 60.000 0.00 0.00 44.80 5.52
4283 8167 1.494721 ACCACCCACTCACACATCTTT 59.505 47.619 0.00 0.00 0.00 2.52
4292 8176 5.106396 CCACTCACACATCTTTCTTTCCATC 60.106 44.000 0.00 0.00 0.00 3.51
4315 8199 1.779092 CCCATCACCATCCTTCCTCAT 59.221 52.381 0.00 0.00 0.00 2.90
4436 8324 8.144478 TCATGGTTCTTGCTCAATAGTAGTATC 58.856 37.037 0.00 0.00 0.00 2.24
4565 8632 1.949847 CTCTTCGTGTCCTCCCGCAT 61.950 60.000 0.00 0.00 0.00 4.73
4663 8741 4.758251 CCTCCGCGCATGGTGTCA 62.758 66.667 8.75 0.00 0.00 3.58
4845 8925 2.223923 CGCTAGATCTGTCCAAGAAGGG 60.224 54.545 5.18 0.00 38.79 3.95
4891 8971 0.321021 CTGCAGTGGAGCTGTTCTCT 59.679 55.000 5.25 0.00 46.64 3.10
4961 9042 2.032528 TCGGTGCTTTGGCTGGAG 59.967 61.111 0.00 0.00 39.59 3.86
5089 9170 2.741759 TGCATGTTCACGAAGAGCTA 57.258 45.000 0.00 0.00 0.00 3.32
5140 9221 2.224113 GGTTCTGTACGGTGGAGTTTGA 60.224 50.000 0.64 0.00 0.00 2.69
5150 9256 2.281276 GAGTTTGAACGCCCGGGT 60.281 61.111 24.63 0.58 0.00 5.28
5305 9411 3.716353 TGGCAAGCCCTGATCTTTATCTA 59.284 43.478 8.89 0.00 32.15 1.98
5560 9780 5.130292 TGTTTACTCCGTTCAGGTAGAAG 57.870 43.478 0.00 0.00 41.99 2.85
6007 10263 4.163839 AGAGGTGAATGAGGATGAAGAAGG 59.836 45.833 0.00 0.00 0.00 3.46
6091 10349 6.985188 AAAAGCGCTACTATGAGATTTTCA 57.015 33.333 12.05 0.00 40.85 2.69
6322 14892 8.394877 TGGCTTCTTTTACATAAATATCACGTG 58.605 33.333 9.94 9.94 0.00 4.49
6335 14905 9.730420 ATAAATATCACGTGGAAAATTGTAAGC 57.270 29.630 17.00 0.00 0.00 3.09
6536 15113 7.234355 AGAACCTCATCCTAACTCATGTTTTT 58.766 34.615 0.00 0.00 37.59 1.94
6759 15340 7.906611 TTCACACAATAACAAACGAAATCTG 57.093 32.000 0.00 0.00 0.00 2.90
6779 15360 1.104577 GGCCTTGGTTCACGGTCAAA 61.105 55.000 0.00 0.00 27.43 2.69
6789 15370 4.084013 GGTTCACGGTCAAAGAACTATGTG 60.084 45.833 8.41 0.00 40.97 3.21
6790 15371 4.330944 TCACGGTCAAAGAACTATGTGT 57.669 40.909 0.00 0.00 0.00 3.72
6791 15372 4.304110 TCACGGTCAAAGAACTATGTGTC 58.696 43.478 0.00 0.00 0.00 3.67
6795 15376 4.557205 GGTCAAAGAACTATGTGTCGACT 58.443 43.478 17.92 0.00 0.00 4.18
6901 15483 0.817013 TTCTGGCCATCCATTTTCGC 59.183 50.000 5.51 0.00 42.51 4.70
7032 15626 1.692519 AGCCCTATGGTAAACTAGGCG 59.307 52.381 0.00 0.00 34.36 5.52
7303 16366 1.610624 CCGACACTATGGCTGTTTGGT 60.611 52.381 0.00 0.00 0.00 3.67
7336 16400 2.095212 GCTCCGTTGGGATTTGAAGAAC 60.095 50.000 0.00 0.00 42.83 3.01
7452 16520 7.158021 CACTCTTCACTAATTCTTTCCACTCT 58.842 38.462 0.00 0.00 0.00 3.24
7466 16534 1.682854 CCACTCTGGCAACACAACATT 59.317 47.619 0.00 0.00 46.17 2.71
7524 16629 4.721132 TCTTTCCCGTTCTTACACCAAAT 58.279 39.130 0.00 0.00 0.00 2.32
7618 16727 0.114954 TTTGGGCATCTTGGAGGCTT 59.885 50.000 4.30 0.00 39.44 4.35
7795 16932 3.054802 GGATGGGAGATGAGTCTTTGTGT 60.055 47.826 0.00 0.00 33.97 3.72
8045 17210 1.064463 ACGGAATGGCCACATGAGATT 60.064 47.619 8.16 0.00 37.40 2.40
8057 17222 5.688500 GCCACATGAGATTCTCCCAGAAATA 60.689 44.000 11.12 0.00 37.82 1.40
8130 17297 7.916450 GCATACAAGGTGTTGTTTTTGTACTAA 59.084 33.333 0.00 0.00 45.00 2.24
8256 17850 7.060421 TCTTCCTAATCAGTTTTTGTGTTCCT 58.940 34.615 0.00 0.00 0.00 3.36
8264 17858 7.222000 TCAGTTTTTGTGTTCCTTACTTTGT 57.778 32.000 0.00 0.00 0.00 2.83
8300 17896 3.808728 TGGTCTATTGCAGAATAGTGGC 58.191 45.455 5.52 0.00 41.33 5.01
8345 17941 6.555463 TTGTGTATTTGGTTGGGGTTAAAA 57.445 33.333 0.00 0.00 0.00 1.52
8355 17951 4.513692 GGTTGGGGTTAAAATTTTGAGCAC 59.486 41.667 21.71 19.70 0.00 4.40
8380 17976 3.697045 GAGAGGTTGAGAAGCTGCTACTA 59.303 47.826 0.90 0.00 39.77 1.82
8419 18015 1.470098 GCTGTGTGCTGATTAACCTGG 59.530 52.381 0.00 0.00 38.95 4.45
8483 18079 3.715628 TTGAGCTTTCTCCTTTTGCAC 57.284 42.857 0.00 0.00 38.58 4.57
8511 18107 4.388577 AAAATCTTGGTGGAGGCTACTT 57.611 40.909 0.00 0.00 0.00 2.24
8548 18149 4.788617 AGTGGGAATACAGGTTTATCTGGT 59.211 41.667 0.00 0.00 38.98 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.114767 TGACCTTTACCTTTACAAAACGAGT 58.885 36.000 0.00 0.00 0.00 4.18
1 2 6.607735 TGACCTTTACCTTTACAAAACGAG 57.392 37.500 0.00 0.00 0.00 4.18
2 3 6.598850 AGTTGACCTTTACCTTTACAAAACGA 59.401 34.615 0.00 0.00 0.00 3.85
5 6 8.905850 CCTAAGTTGACCTTTACCTTTACAAAA 58.094 33.333 0.00 0.00 34.46 2.44
8 9 6.993902 CACCTAAGTTGACCTTTACCTTTACA 59.006 38.462 0.00 0.00 34.46 2.41
9 10 6.429078 CCACCTAAGTTGACCTTTACCTTTAC 59.571 42.308 0.00 0.00 34.46 2.01
10 11 6.101588 ACCACCTAAGTTGACCTTTACCTTTA 59.898 38.462 0.00 0.00 34.46 1.85
11 12 5.103813 ACCACCTAAGTTGACCTTTACCTTT 60.104 40.000 0.00 0.00 34.46 3.11
12 13 4.414514 ACCACCTAAGTTGACCTTTACCTT 59.585 41.667 0.00 0.00 34.46 3.50
13 14 3.978672 ACCACCTAAGTTGACCTTTACCT 59.021 43.478 0.00 0.00 34.46 3.08
14 15 4.070009 CACCACCTAAGTTGACCTTTACC 58.930 47.826 0.00 0.00 34.46 2.85
15 16 4.711399 ACACCACCTAAGTTGACCTTTAC 58.289 43.478 0.00 0.00 34.46 2.01
16 17 5.376756 AACACCACCTAAGTTGACCTTTA 57.623 39.130 0.00 0.00 34.46 1.85
17 18 3.945640 ACACCACCTAAGTTGACCTTT 57.054 42.857 0.00 0.00 34.46 3.11
18 19 3.945640 AACACCACCTAAGTTGACCTT 57.054 42.857 0.00 0.00 37.17 3.50
19 20 3.551846 CAAACACCACCTAAGTTGACCT 58.448 45.455 0.00 0.00 0.00 3.85
20 21 2.621526 CCAAACACCACCTAAGTTGACC 59.378 50.000 0.00 0.00 0.00 4.02
21 22 3.284617 ACCAAACACCACCTAAGTTGAC 58.715 45.455 0.00 0.00 0.00 3.18
22 23 3.655615 ACCAAACACCACCTAAGTTGA 57.344 42.857 0.00 0.00 0.00 3.18
23 24 3.951680 AGAACCAAACACCACCTAAGTTG 59.048 43.478 0.00 0.00 0.00 3.16
24 25 4.079958 AGAGAACCAAACACCACCTAAGTT 60.080 41.667 0.00 0.00 0.00 2.66
25 26 3.458487 AGAGAACCAAACACCACCTAAGT 59.542 43.478 0.00 0.00 0.00 2.24
26 27 4.086706 AGAGAACCAAACACCACCTAAG 57.913 45.455 0.00 0.00 0.00 2.18
27 28 4.657039 ACTAGAGAACCAAACACCACCTAA 59.343 41.667 0.00 0.00 0.00 2.69
28 29 4.228824 ACTAGAGAACCAAACACCACCTA 58.771 43.478 0.00 0.00 0.00 3.08
29 30 3.046374 ACTAGAGAACCAAACACCACCT 58.954 45.455 0.00 0.00 0.00 4.00
30 31 3.400255 GACTAGAGAACCAAACACCACC 58.600 50.000 0.00 0.00 0.00 4.61
31 32 3.071167 AGGACTAGAGAACCAAACACCAC 59.929 47.826 0.00 0.00 0.00 4.16
32 33 3.314693 AGGACTAGAGAACCAAACACCA 58.685 45.455 0.00 0.00 0.00 4.17
33 34 4.081586 CCTAGGACTAGAGAACCAAACACC 60.082 50.000 1.05 0.00 35.21 4.16
34 35 4.771054 TCCTAGGACTAGAGAACCAAACAC 59.229 45.833 7.62 0.00 35.21 3.32
35 36 4.771054 GTCCTAGGACTAGAGAACCAAACA 59.229 45.833 31.12 0.00 41.57 2.83
36 37 5.327616 GTCCTAGGACTAGAGAACCAAAC 57.672 47.826 31.12 3.26 41.57 2.93
68 69 6.669631 AGTCTTTTTCAAAAAGTCCTAGGGA 58.330 36.000 19.82 0.00 0.00 4.20
69 70 6.773200 AGAGTCTTTTTCAAAAAGTCCTAGGG 59.227 38.462 19.82 0.00 0.00 3.53
70 71 7.499232 TGAGAGTCTTTTTCAAAAAGTCCTAGG 59.501 37.037 19.82 0.82 0.00 3.02
71 72 8.438676 TGAGAGTCTTTTTCAAAAAGTCCTAG 57.561 34.615 19.82 0.00 0.00 3.02
72 73 8.801882 TTGAGAGTCTTTTTCAAAAAGTCCTA 57.198 30.769 19.82 0.61 0.00 2.94
73 74 7.148000 CCTTGAGAGTCTTTTTCAAAAAGTCCT 60.148 37.037 19.82 16.49 31.11 3.85
74 75 6.975197 CCTTGAGAGTCTTTTTCAAAAAGTCC 59.025 38.462 19.82 12.77 31.11 3.85
75 76 7.762382 TCCTTGAGAGTCTTTTTCAAAAAGTC 58.238 34.615 19.82 15.25 31.11 3.01
76 77 7.148000 CCTCCTTGAGAGTCTTTTTCAAAAAGT 60.148 37.037 19.82 4.20 41.47 2.66
77 78 7.148000 ACCTCCTTGAGAGTCTTTTTCAAAAAG 60.148 37.037 15.46 15.46 41.47 2.27
78 79 6.663523 ACCTCCTTGAGAGTCTTTTTCAAAAA 59.336 34.615 0.00 0.00 41.47 1.94
79 80 6.095440 CACCTCCTTGAGAGTCTTTTTCAAAA 59.905 38.462 0.00 0.00 41.47 2.44
80 81 5.590259 CACCTCCTTGAGAGTCTTTTTCAAA 59.410 40.000 0.00 0.00 41.47 2.69
81 82 5.126067 CACCTCCTTGAGAGTCTTTTTCAA 58.874 41.667 0.00 0.00 41.47 2.69
82 83 4.708177 CACCTCCTTGAGAGTCTTTTTCA 58.292 43.478 0.00 0.00 41.47 2.69
83 84 3.500299 GCACCTCCTTGAGAGTCTTTTTC 59.500 47.826 0.00 0.00 41.47 2.29
84 85 3.137360 AGCACCTCCTTGAGAGTCTTTTT 59.863 43.478 0.00 0.00 41.47 1.94
85 86 2.708325 AGCACCTCCTTGAGAGTCTTTT 59.292 45.455 0.00 0.00 41.47 2.27
86 87 2.334023 AGCACCTCCTTGAGAGTCTTT 58.666 47.619 0.00 0.00 41.47 2.52
87 88 2.022718 AGCACCTCCTTGAGAGTCTT 57.977 50.000 0.00 0.00 41.47 3.01
88 89 1.899142 GAAGCACCTCCTTGAGAGTCT 59.101 52.381 0.00 0.00 41.47 3.24
89 90 1.899142 AGAAGCACCTCCTTGAGAGTC 59.101 52.381 0.00 0.00 41.47 3.36
90 91 2.022718 AGAAGCACCTCCTTGAGAGT 57.977 50.000 0.00 0.00 41.47 3.24
91 92 3.118811 CCTTAGAAGCACCTCCTTGAGAG 60.119 52.174 0.00 0.00 42.83 3.20
92 93 2.834549 CCTTAGAAGCACCTCCTTGAGA 59.165 50.000 0.00 0.00 0.00 3.27
93 94 2.834549 TCCTTAGAAGCACCTCCTTGAG 59.165 50.000 0.00 0.00 0.00 3.02
94 95 2.567615 GTCCTTAGAAGCACCTCCTTGA 59.432 50.000 0.00 0.00 0.00 3.02
95 96 2.569404 AGTCCTTAGAAGCACCTCCTTG 59.431 50.000 0.00 0.00 0.00 3.61
96 97 2.909217 AGTCCTTAGAAGCACCTCCTT 58.091 47.619 0.00 0.00 0.00 3.36
97 98 2.632763 AGTCCTTAGAAGCACCTCCT 57.367 50.000 0.00 0.00 0.00 3.69
98 99 3.704800 AAAGTCCTTAGAAGCACCTCC 57.295 47.619 0.00 0.00 0.00 4.30
99 100 5.995897 TGTTAAAAGTCCTTAGAAGCACCTC 59.004 40.000 0.00 0.00 0.00 3.85
100 101 5.937111 TGTTAAAAGTCCTTAGAAGCACCT 58.063 37.500 0.00 0.00 0.00 4.00
101 102 6.628919 TTGTTAAAAGTCCTTAGAAGCACC 57.371 37.500 0.00 0.00 0.00 5.01
102 103 8.920509 TTTTTGTTAAAAGTCCTTAGAAGCAC 57.079 30.769 0.00 0.00 0.00 4.40
133 134 3.653164 ACCAAACAGGATGGGACTTTTT 58.347 40.909 0.00 0.00 43.62 1.94
134 135 3.328535 ACCAAACAGGATGGGACTTTT 57.671 42.857 0.00 0.00 43.62 2.27
135 136 3.328535 AACCAAACAGGATGGGACTTT 57.671 42.857 0.00 0.00 43.62 2.66
136 137 3.328535 AAACCAAACAGGATGGGACTT 57.671 42.857 0.00 0.00 43.62 3.01
137 138 3.397955 AGTAAACCAAACAGGATGGGACT 59.602 43.478 0.00 0.00 43.62 3.85
138 139 3.763057 AGTAAACCAAACAGGATGGGAC 58.237 45.455 0.00 0.00 43.62 4.46
139 140 4.018779 CCTAGTAAACCAAACAGGATGGGA 60.019 45.833 0.00 0.00 43.62 4.37
140 141 4.018779 TCCTAGTAAACCAAACAGGATGGG 60.019 45.833 0.00 0.00 43.62 4.00
141 142 5.174037 TCCTAGTAAACCAAACAGGATGG 57.826 43.478 0.00 0.00 43.62 3.51
142 143 6.238648 AGTTCCTAGTAAACCAAACAGGATG 58.761 40.000 0.00 0.00 46.00 3.51
143 144 6.449830 AGTTCCTAGTAAACCAAACAGGAT 57.550 37.500 0.00 0.00 41.22 3.24
144 145 5.899631 AGTTCCTAGTAAACCAAACAGGA 57.100 39.130 2.51 0.00 41.22 3.86
145 146 6.954487 AAAGTTCCTAGTAAACCAAACAGG 57.046 37.500 2.51 0.00 45.67 4.00
146 147 8.683615 AGAAAAAGTTCCTAGTAAACCAAACAG 58.316 33.333 2.51 0.00 33.92 3.16
147 148 8.584063 AGAAAAAGTTCCTAGTAAACCAAACA 57.416 30.769 2.51 0.00 33.92 2.83
149 150 9.910267 ACTAGAAAAAGTTCCTAGTAAACCAAA 57.090 29.630 0.00 0.00 33.92 3.28
150 151 9.551734 GACTAGAAAAAGTTCCTAGTAAACCAA 57.448 33.333 0.00 0.00 32.51 3.67
151 152 8.152898 GGACTAGAAAAAGTTCCTAGTAAACCA 58.847 37.037 0.00 0.00 32.51 3.67
152 153 7.605691 GGGACTAGAAAAAGTTCCTAGTAAACC 59.394 40.741 0.00 9.97 41.41 3.27
153 154 8.152898 TGGGACTAGAAAAAGTTCCTAGTAAAC 58.847 37.037 0.00 0.00 44.53 2.01
154 155 8.266363 TGGGACTAGAAAAAGTTCCTAGTAAA 57.734 34.615 0.00 1.51 44.53 2.01
155 156 7.860649 TGGGACTAGAAAAAGTTCCTAGTAA 57.139 36.000 0.00 1.75 44.53 2.24
156 157 7.290714 TGTTGGGACTAGAAAAAGTTCCTAGTA 59.709 37.037 0.00 0.00 44.53 1.82
157 158 6.100714 TGTTGGGACTAGAAAAAGTTCCTAGT 59.899 38.462 0.00 10.50 44.53 2.57
158 159 6.427242 GTGTTGGGACTAGAAAAAGTTCCTAG 59.573 42.308 0.00 0.00 44.53 3.02
159 160 6.126710 TGTGTTGGGACTAGAAAAAGTTCCTA 60.127 38.462 0.00 0.00 44.53 2.94
160 161 5.131067 GTGTTGGGACTAGAAAAAGTTCCT 58.869 41.667 0.00 0.00 44.53 3.36
161 162 4.885325 TGTGTTGGGACTAGAAAAAGTTCC 59.115 41.667 0.00 0.00 44.49 3.62
162 163 6.445357 TTGTGTTGGGACTAGAAAAAGTTC 57.555 37.500 0.00 0.00 0.00 3.01
163 164 6.844097 TTTGTGTTGGGACTAGAAAAAGTT 57.156 33.333 0.00 0.00 0.00 2.66
164 165 6.844097 TTTTGTGTTGGGACTAGAAAAAGT 57.156 33.333 0.00 0.00 0.00 2.66
185 186 4.323180 GGTGTTTGGTTTCAGGGACTTTTT 60.323 41.667 0.00 0.00 34.60 1.94
186 187 3.196901 GGTGTTTGGTTTCAGGGACTTTT 59.803 43.478 0.00 0.00 34.60 2.27
187 188 2.764010 GGTGTTTGGTTTCAGGGACTTT 59.236 45.455 0.00 0.00 34.60 2.66
188 189 2.024369 AGGTGTTTGGTTTCAGGGACTT 60.024 45.455 0.00 0.00 34.60 3.01
189 190 1.569072 AGGTGTTTGGTTTCAGGGACT 59.431 47.619 0.00 0.00 43.88 3.85
190 191 1.954382 GAGGTGTTTGGTTTCAGGGAC 59.046 52.381 0.00 0.00 0.00 4.46
191 192 1.133606 GGAGGTGTTTGGTTTCAGGGA 60.134 52.381 0.00 0.00 0.00 4.20
192 193 1.133482 AGGAGGTGTTTGGTTTCAGGG 60.133 52.381 0.00 0.00 0.00 4.45
193 194 2.364972 AGGAGGTGTTTGGTTTCAGG 57.635 50.000 0.00 0.00 0.00 3.86
194 195 4.887655 AGTTAAGGAGGTGTTTGGTTTCAG 59.112 41.667 0.00 0.00 0.00 3.02
195 196 4.862371 AGTTAAGGAGGTGTTTGGTTTCA 58.138 39.130 0.00 0.00 0.00 2.69
196 197 5.847111 AAGTTAAGGAGGTGTTTGGTTTC 57.153 39.130 0.00 0.00 0.00 2.78
197 198 7.907841 AATAAGTTAAGGAGGTGTTTGGTTT 57.092 32.000 0.00 0.00 0.00 3.27
198 199 7.014905 GGAAATAAGTTAAGGAGGTGTTTGGTT 59.985 37.037 0.00 0.00 0.00 3.67
199 200 6.492429 GGAAATAAGTTAAGGAGGTGTTTGGT 59.508 38.462 0.00 0.00 0.00 3.67
200 201 6.492087 TGGAAATAAGTTAAGGAGGTGTTTGG 59.508 38.462 0.00 0.00 0.00 3.28
201 202 7.368059 GTGGAAATAAGTTAAGGAGGTGTTTG 58.632 38.462 0.00 0.00 0.00 2.93
202 203 6.492429 GGTGGAAATAAGTTAAGGAGGTGTTT 59.508 38.462 0.00 0.00 0.00 2.83
203 204 6.008331 GGTGGAAATAAGTTAAGGAGGTGTT 58.992 40.000 0.00 0.00 0.00 3.32
204 205 5.516062 GGGTGGAAATAAGTTAAGGAGGTGT 60.516 44.000 0.00 0.00 0.00 4.16
205 206 4.948004 GGGTGGAAATAAGTTAAGGAGGTG 59.052 45.833 0.00 0.00 0.00 4.00
206 207 4.856182 AGGGTGGAAATAAGTTAAGGAGGT 59.144 41.667 0.00 0.00 0.00 3.85
207 208 5.045140 TGAGGGTGGAAATAAGTTAAGGAGG 60.045 44.000 0.00 0.00 0.00 4.30
208 209 5.880887 GTGAGGGTGGAAATAAGTTAAGGAG 59.119 44.000 0.00 0.00 0.00 3.69
209 210 5.550403 AGTGAGGGTGGAAATAAGTTAAGGA 59.450 40.000 0.00 0.00 0.00 3.36
210 211 5.816682 AGTGAGGGTGGAAATAAGTTAAGG 58.183 41.667 0.00 0.00 0.00 2.69
211 212 5.880887 GGAGTGAGGGTGGAAATAAGTTAAG 59.119 44.000 0.00 0.00 0.00 1.85
212 213 5.280830 GGGAGTGAGGGTGGAAATAAGTTAA 60.281 44.000 0.00 0.00 0.00 2.01
213 214 4.226620 GGGAGTGAGGGTGGAAATAAGTTA 59.773 45.833 0.00 0.00 0.00 2.24
214 215 3.010250 GGGAGTGAGGGTGGAAATAAGTT 59.990 47.826 0.00 0.00 0.00 2.66
215 216 2.576648 GGGAGTGAGGGTGGAAATAAGT 59.423 50.000 0.00 0.00 0.00 2.24
216 217 2.846827 AGGGAGTGAGGGTGGAAATAAG 59.153 50.000 0.00 0.00 0.00 1.73
217 218 2.929301 AGGGAGTGAGGGTGGAAATAA 58.071 47.619 0.00 0.00 0.00 1.40
218 219 2.661176 AGGGAGTGAGGGTGGAAATA 57.339 50.000 0.00 0.00 0.00 1.40
219 220 1.636003 GAAGGGAGTGAGGGTGGAAAT 59.364 52.381 0.00 0.00 0.00 2.17
220 221 1.064825 GAAGGGAGTGAGGGTGGAAA 58.935 55.000 0.00 0.00 0.00 3.13
221 222 0.104672 TGAAGGGAGTGAGGGTGGAA 60.105 55.000 0.00 0.00 0.00 3.53
222 223 0.836400 GTGAAGGGAGTGAGGGTGGA 60.836 60.000 0.00 0.00 0.00 4.02
223 224 1.127567 TGTGAAGGGAGTGAGGGTGG 61.128 60.000 0.00 0.00 0.00 4.61
224 225 0.764890 TTGTGAAGGGAGTGAGGGTG 59.235 55.000 0.00 0.00 0.00 4.61
225 226 1.747444 ATTGTGAAGGGAGTGAGGGT 58.253 50.000 0.00 0.00 0.00 4.34
226 227 3.107601 TCTATTGTGAAGGGAGTGAGGG 58.892 50.000 0.00 0.00 0.00 4.30
227 228 4.826274 TTCTATTGTGAAGGGAGTGAGG 57.174 45.455 0.00 0.00 0.00 3.86
228 229 7.391554 TCATTTTTCTATTGTGAAGGGAGTGAG 59.608 37.037 0.00 0.00 0.00 3.51
229 230 7.230747 TCATTTTTCTATTGTGAAGGGAGTGA 58.769 34.615 0.00 0.00 0.00 3.41
230 231 7.452880 TCATTTTTCTATTGTGAAGGGAGTG 57.547 36.000 0.00 0.00 0.00 3.51
231 232 7.123247 CCATCATTTTTCTATTGTGAAGGGAGT 59.877 37.037 0.00 0.00 0.00 3.85
232 233 7.417116 CCCATCATTTTTCTATTGTGAAGGGAG 60.417 40.741 7.94 0.00 45.86 4.30
233 234 6.380846 CCCATCATTTTTCTATTGTGAAGGGA 59.619 38.462 7.94 0.00 45.86 4.20
234 235 6.407299 CCCCATCATTTTTCTATTGTGAAGGG 60.407 42.308 6.93 6.93 43.79 3.95
235 236 6.407299 CCCCCATCATTTTTCTATTGTGAAGG 60.407 42.308 0.00 0.00 0.00 3.46
236 237 6.380846 TCCCCCATCATTTTTCTATTGTGAAG 59.619 38.462 0.00 0.00 0.00 3.02
237 238 6.259893 TCCCCCATCATTTTTCTATTGTGAA 58.740 36.000 0.00 0.00 0.00 3.18
238 239 5.836705 TCCCCCATCATTTTTCTATTGTGA 58.163 37.500 0.00 0.00 0.00 3.58
239 240 5.069516 CCTCCCCCATCATTTTTCTATTGTG 59.930 44.000 0.00 0.00 0.00 3.33
240 241 5.211201 CCTCCCCCATCATTTTTCTATTGT 58.789 41.667 0.00 0.00 0.00 2.71
241 242 4.590222 CCCTCCCCCATCATTTTTCTATTG 59.410 45.833 0.00 0.00 0.00 1.90
242 243 4.389034 CCCCTCCCCCATCATTTTTCTATT 60.389 45.833 0.00 0.00 0.00 1.73
243 244 3.142787 CCCCTCCCCCATCATTTTTCTAT 59.857 47.826 0.00 0.00 0.00 1.98
244 245 2.517980 CCCCTCCCCCATCATTTTTCTA 59.482 50.000 0.00 0.00 0.00 2.10
245 246 1.291939 CCCCTCCCCCATCATTTTTCT 59.708 52.381 0.00 0.00 0.00 2.52
246 247 1.008327 ACCCCTCCCCCATCATTTTTC 59.992 52.381 0.00 0.00 0.00 2.29
247 248 1.008327 GACCCCTCCCCCATCATTTTT 59.992 52.381 0.00 0.00 0.00 1.94
248 249 0.636647 GACCCCTCCCCCATCATTTT 59.363 55.000 0.00 0.00 0.00 1.82
249 250 1.296662 GGACCCCTCCCCCATCATTT 61.297 60.000 0.00 0.00 0.00 2.32
250 251 1.701390 GGACCCCTCCCCCATCATT 60.701 63.158 0.00 0.00 0.00 2.57
251 252 2.038330 GGACCCCTCCCCCATCAT 60.038 66.667 0.00 0.00 0.00 2.45
252 253 2.857998 GAAGGACCCCTCCCCCATCA 62.858 65.000 0.00 0.00 37.25 3.07
253 254 2.044620 AAGGACCCCTCCCCCATC 59.955 66.667 0.00 0.00 37.25 3.51
254 255 2.044620 GAAGGACCCCTCCCCCAT 59.955 66.667 0.00 0.00 37.25 4.00
255 256 4.364686 GGAAGGACCCCTCCCCCA 62.365 72.222 0.00 0.00 37.25 4.96
268 269 0.954452 AAGTGAAAAGCTGCCGGAAG 59.046 50.000 5.05 4.75 0.00 3.46
269 270 2.264005 TAAGTGAAAAGCTGCCGGAA 57.736 45.000 5.05 0.00 0.00 4.30
270 271 2.264005 TTAAGTGAAAAGCTGCCGGA 57.736 45.000 5.05 0.00 0.00 5.14
271 272 2.607038 GGTTTAAGTGAAAAGCTGCCGG 60.607 50.000 0.00 0.00 34.73 6.13
272 273 2.607038 GGGTTTAAGTGAAAAGCTGCCG 60.607 50.000 0.00 0.00 37.11 5.69
273 274 2.607038 CGGGTTTAAGTGAAAAGCTGCC 60.607 50.000 0.00 0.00 36.68 4.85
281 282 2.572209 CCCCTTCGGGTTTAAGTGAA 57.428 50.000 0.00 0.00 45.50 3.18
304 305 3.513515 TCAAACAATAGTGCCATTTCCCC 59.486 43.478 0.00 0.00 0.00 4.81
313 314 7.967854 TGTTGTAATATGCTCAAACAATAGTGC 59.032 33.333 0.00 0.00 33.10 4.40
382 391 2.597510 GCGGGACTGGGCTGTTTT 60.598 61.111 0.00 0.00 0.00 2.43
920 986 1.852157 ATTTTGGAGAGGAGGCGCCA 61.852 55.000 31.54 2.48 40.02 5.69
991 1596 1.773653 GGGCTTCATCATCTCTCCCTT 59.226 52.381 0.00 0.00 0.00 3.95
1305 2293 1.191489 TCTCGGTGGAGATGTTGGCA 61.191 55.000 0.00 0.00 44.28 4.92
1395 2383 2.817258 TGCTTAAGTGGCACATACCAAC 59.183 45.455 21.41 3.39 44.52 3.77
1403 2391 1.009829 CGAGGATGCTTAAGTGGCAC 58.990 55.000 10.29 10.29 42.69 5.01
1404 2392 0.107703 CCGAGGATGCTTAAGTGGCA 60.108 55.000 4.02 0.00 44.05 4.92
1405 2393 0.178068 TCCGAGGATGCTTAAGTGGC 59.822 55.000 4.02 0.00 0.00 5.01
1406 2394 2.548920 GGATCCGAGGATGCTTAAGTGG 60.549 54.545 15.16 0.00 39.42 4.00
1407 2395 2.760374 GGATCCGAGGATGCTTAAGTG 58.240 52.381 15.16 0.00 39.42 3.16
1525 2973 3.682858 CCCTCAAATTAAGCTCGTCGAAA 59.317 43.478 0.00 0.00 0.00 3.46
1531 2979 6.249035 TGTTTTACCCTCAAATTAAGCTCG 57.751 37.500 0.00 0.00 0.00 5.03
1572 3787 4.342862 AATGTGGCGAGAGTTGCTATAT 57.657 40.909 0.00 0.00 0.00 0.86
1580 3795 4.819630 TCAAAACTAAAATGTGGCGAGAGT 59.180 37.500 0.00 0.00 0.00 3.24
1653 3886 2.169978 GCGGGAGTACTTACCAATTCCT 59.830 50.000 15.35 0.00 0.00 3.36
1676 3909 2.158813 GCCTTATGAACCCGAATGGAGA 60.159 50.000 0.00 0.00 37.49 3.71
1911 4144 1.980772 AGCAGCAATGGCCTCAACC 60.981 57.895 3.32 0.00 42.56 3.77
1984 4219 8.592529 TGAATGGGAAATAACATGAAAGATGA 57.407 30.769 0.00 0.00 0.00 2.92
2449 4807 3.551863 CGATTACCATCTGCTCTGAGGAC 60.552 52.174 6.83 0.00 0.00 3.85
2779 6168 5.833131 AGTTCTAAAGATGCCCAGAACAAAA 59.167 36.000 13.89 0.00 45.98 2.44
2960 6350 6.989169 GGTTTCTATACTGCATCTGAGTGATT 59.011 38.462 0.00 0.00 32.05 2.57
3869 7733 5.027293 ACTTAAGGTGGTGTTTTAGACGT 57.973 39.130 7.53 0.00 0.00 4.34
3882 7746 8.419076 AAAGTGCACAATTTTTACTTAAGGTG 57.581 30.769 21.04 3.87 31.85 4.00
3996 7875 6.552445 AAGATAGTAGATCACTGCAAGGTT 57.448 37.500 0.00 0.00 39.30 3.50
4245 8126 0.035820 GTTTCTGTGTATGGCGGGGA 60.036 55.000 0.00 0.00 0.00 4.81
4250 8131 1.173913 GGGTGGTTTCTGTGTATGGC 58.826 55.000 0.00 0.00 0.00 4.40
4254 8138 2.120312 TGAGTGGGTGGTTTCTGTGTA 58.880 47.619 0.00 0.00 0.00 2.90
4283 8167 1.284785 GGTGATGGGTGGATGGAAAGA 59.715 52.381 0.00 0.00 0.00 2.52
4292 8176 0.106519 GGAAGGATGGTGATGGGTGG 60.107 60.000 0.00 0.00 0.00 4.61
4315 8199 6.655078 ACACGGTAAGGTAAAGACTAAAGA 57.345 37.500 0.00 0.00 0.00 2.52
4467 8532 0.958822 CCTCACAAGGGGGTTTTTCG 59.041 55.000 0.00 0.00 39.21 3.46
4608 8686 1.298157 GGGTAGAGGGAGGGAGGAGT 61.298 65.000 0.00 0.00 0.00 3.85
4663 8741 1.289109 CTCGGAACCGCGTTGTTGAT 61.289 55.000 4.92 0.00 39.59 2.57
4845 8925 1.675641 AAACGAGGCCATGGACTGC 60.676 57.895 29.54 15.87 30.74 4.40
4912 8992 0.176680 GGAGGTCATGACTGCATCGT 59.823 55.000 24.50 0.00 30.68 3.73
5040 9121 1.227234 CGCCAGATGCACCGTATGA 60.227 57.895 0.00 0.00 41.33 2.15
5150 9256 2.440147 CACCATCCAAGGCCACCA 59.560 61.111 5.01 0.00 0.00 4.17
5305 9411 0.751643 ACAAACCAAGGACTTGCGCT 60.752 50.000 9.73 0.00 39.16 5.92
5678 9920 8.986929 AATAGAAATATGTTCTCTCCAAAGGG 57.013 34.615 4.17 0.00 0.00 3.95
5824 10067 1.490490 GTGCATGGATCCCTAACTCCA 59.510 52.381 9.90 0.00 45.27 3.86
6007 10263 3.498927 CATCAGAAAATCCTGGTGCAC 57.501 47.619 8.80 8.80 38.31 4.57
6493 15070 5.249393 AGGTTCTTTTGATCTAAGCTCTCCA 59.751 40.000 0.00 0.00 0.00 3.86
6546 15123 9.464714 GAACAGACGAGATAAGCAAATCTATAA 57.535 33.333 1.18 0.00 36.33 0.98
6561 15138 5.923114 CAGAGAATTTCTTGAACAGACGAGA 59.077 40.000 0.00 0.00 32.41 4.04
6562 15139 5.119898 CCAGAGAATTTCTTGAACAGACGAG 59.880 44.000 0.00 0.00 32.41 4.18
6681 15262 3.119637 CGATAACTCGGGTTGCCAATTTT 60.120 43.478 11.94 0.00 41.27 1.82
6752 15333 1.546029 GTGAACCAAGGCCCAGATTTC 59.454 52.381 0.00 0.00 0.00 2.17
6759 15340 2.671963 GACCGTGAACCAAGGCCC 60.672 66.667 0.00 0.00 36.49 5.80
6779 15360 5.823570 ACATAGCTAGTCGACACATAGTTCT 59.176 40.000 19.50 6.95 0.00 3.01
6789 15370 7.688989 CGTATATCAGAAACATAGCTAGTCGAC 59.311 40.741 7.70 7.70 0.00 4.20
6790 15371 7.148457 CCGTATATCAGAAACATAGCTAGTCGA 60.148 40.741 0.00 0.00 0.00 4.20
6791 15372 6.962116 CCGTATATCAGAAACATAGCTAGTCG 59.038 42.308 0.00 0.00 0.00 4.18
6835 15416 4.808414 AAGCTGCTCAGTATTACTGTCA 57.192 40.909 20.43 17.53 46.03 3.58
6901 15483 2.919494 GCCAAGGTTGCCCAAGTCG 61.919 63.158 0.00 0.00 0.00 4.18
6918 15512 3.500014 GAGTAGACAACAGACTAACGGC 58.500 50.000 0.00 0.00 0.00 5.68
7258 16321 3.385384 CTCCCGCACAGGCTCTCA 61.385 66.667 0.00 0.00 39.21 3.27
7336 16400 4.437930 GCAGAGAAACCGAAGAATGATTGG 60.438 45.833 0.00 0.00 0.00 3.16
7452 16520 2.288334 GCTGATGAATGTTGTGTTGCCA 60.288 45.455 0.00 0.00 0.00 4.92
7524 16629 9.379770 TGAGAGGATGTCAGGATAATGTAATTA 57.620 33.333 0.00 0.00 36.94 1.40
7541 16646 6.103997 CACAAAATTTGGGATTGAGAGGATG 58.896 40.000 10.71 0.00 35.62 3.51
7575 16682 5.964958 AAATTGACCACAACCAGTATGAG 57.035 39.130 0.00 0.00 37.23 2.90
7618 16727 5.246656 TCGGAAGTAAGAAAATGGGAGTACA 59.753 40.000 0.00 0.00 0.00 2.90
7983 17134 3.130280 AGTAAACAGTAAACACCCCCG 57.870 47.619 0.00 0.00 0.00 5.73
8019 17176 3.130164 TCATGTGGCCATTCCGTAAAATG 59.870 43.478 9.72 2.63 37.80 2.32
8045 17210 8.504811 TCACACCAATATATATTTCTGGGAGA 57.495 34.615 13.95 7.54 0.00 3.71
8130 17297 8.712228 AAATAGGTGATCAACTTTCTCCTTTT 57.288 30.769 20.49 7.30 37.97 2.27
8345 17941 3.558674 CCTCTCGGGTGCTCAAAAT 57.441 52.632 0.00 0.00 0.00 1.82
8355 17951 0.108424 CAGCTTCTCAACCTCTCGGG 60.108 60.000 0.00 0.00 41.89 5.14
8419 18015 6.128822 GCAAAAGCTTAACATCTAAAAGGCAC 60.129 38.462 0.00 0.00 0.00 5.01
8483 18079 4.379499 GCCTCCACCAAGATTTTAAAGTCG 60.379 45.833 5.20 0.00 0.00 4.18
8548 18149 4.630111 GCATTGAGGACATTTTTGGAACA 58.370 39.130 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.