Multiple sequence alignment - TraesCS7D01G398500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G398500 chr7D 100.000 3185 0 0 1 3185 514767196 514764012 0.000000e+00 5882.0
1 TraesCS7D01G398500 chr7D 79.699 399 48 15 2043 2418 514880073 514879685 1.130000e-64 257.0
2 TraesCS7D01G398500 chr7D 79.459 370 55 14 1014 1365 514881186 514880820 3.170000e-60 243.0
3 TraesCS7D01G398500 chr7D 80.428 327 44 11 1031 1354 514758677 514758368 6.870000e-57 231.0
4 TraesCS7D01G398500 chr7D 81.860 215 24 8 2063 2274 607614047 607613845 1.970000e-37 167.0
5 TraesCS7D01G398500 chr7D 75.529 331 54 23 1029 1358 608105141 608104837 1.540000e-28 137.0
6 TraesCS7D01G398500 chr7B 90.923 2600 125 33 654 3185 685249060 685246504 0.000000e+00 3391.0
7 TraesCS7D01G398500 chr7B 87.158 366 31 10 317 668 685249438 685249075 4.950000e-108 401.0
8 TraesCS7D01G398500 chr7B 77.243 457 77 11 1013 1457 697804283 697803842 3.170000e-60 243.0
9 TraesCS7D01G398500 chr7B 78.613 346 57 14 1013 1357 697545275 697545604 2.490000e-51 213.0
10 TraesCS7D01G398500 chr7B 83.111 225 31 6 2053 2274 697255819 697255599 6.970000e-47 198.0
11 TraesCS7D01G398500 chr7B 78.596 285 47 5 1011 1287 693325943 693326221 3.270000e-40 176.0
12 TraesCS7D01G398500 chr7B 81.057 227 32 6 2053 2274 693866936 693866716 1.520000e-38 171.0
13 TraesCS7D01G398500 chr7B 83.616 177 27 2 2063 2238 693247965 693247790 7.070000e-37 165.0
14 TraesCS7D01G398500 chr7B 75.652 345 64 10 1013 1353 695908484 695908812 1.530000e-33 154.0
15 TraesCS7D01G398500 chr7B 76.074 326 57 16 1037 1358 695278753 695279061 1.980000e-32 150.0
16 TraesCS7D01G398500 chr7B 82.143 168 30 0 1037 1204 685221947 685221780 9.210000e-31 145.0
17 TraesCS7D01G398500 chr7B 75.767 326 58 15 1037 1358 698245498 698245190 9.210000e-31 145.0
18 TraesCS7D01G398500 chr7B 85.542 83 6 5 2436 2513 86226733 86226652 7.320000e-12 82.4
19 TraesCS7D01G398500 chr7B 100.000 32 0 0 2484 2515 452157699 452157668 3.430000e-05 60.2
20 TraesCS7D01G398500 chr2A 76.701 588 117 15 1029 1603 744642545 744641965 3.090000e-80 309.0
21 TraesCS7D01G398500 chr2A 91.026 78 3 2 2436 2512 258346218 258346292 5.620000e-18 102.0
22 TraesCS7D01G398500 chr2A 83.544 79 5 7 2441 2513 538898593 538898517 2.050000e-07 67.6
23 TraesCS7D01G398500 chr4A 81.894 359 48 11 1014 1359 662103114 662103468 1.450000e-73 287.0
24 TraesCS7D01G398500 chrUn 81.818 363 45 14 1014 1358 77487164 77486805 5.200000e-73 285.0
25 TraesCS7D01G398500 chrUn 78.660 403 49 17 2043 2418 77486012 77485620 1.910000e-57 233.0
26 TraesCS7D01G398500 chrUn 79.389 262 40 5 1037 1290 307387591 307387336 4.220000e-39 172.0
27 TraesCS7D01G398500 chrUn 79.835 243 26 8 1292 1512 77486781 77486540 4.250000e-34 156.0
28 TraesCS7D01G398500 chrUn 79.452 146 25 5 2814 2955 77646723 77646579 7.270000e-17 99.0
29 TraesCS7D01G398500 chr3B 77.179 390 49 23 2051 2411 712840109 712839731 1.170000e-44 191.0
30 TraesCS7D01G398500 chr3B 81.696 224 32 4 2051 2274 712810593 712810379 9.080000e-41 178.0
31 TraesCS7D01G398500 chr3B 75.904 166 36 4 1150 1314 712854026 712853864 7.320000e-12 82.4
32 TraesCS7D01G398500 chr7A 79.654 231 45 2 1013 1242 700045661 700045890 7.070000e-37 165.0
33 TraesCS7D01G398500 chr3A 81.383 188 32 2 2051 2238 673509033 673508849 1.980000e-32 150.0
34 TraesCS7D01G398500 chr2D 91.358 81 3 2 2436 2515 239973665 239973742 1.210000e-19 108.0
35 TraesCS7D01G398500 chr6A 89.189 74 5 2 2443 2515 511569829 511569900 4.380000e-14 89.8
36 TraesCS7D01G398500 chr1D 97.222 36 1 0 2484 2519 344135246 344135211 9.540000e-06 62.1
37 TraesCS7D01G398500 chr2B 100.000 32 0 0 2484 2515 281874107 281874138 3.430000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G398500 chr7D 514764012 514767196 3184 True 5882.000000 5882 100.000000 1 3185 1 chr7D.!!$R2 3184
1 TraesCS7D01G398500 chr7D 514879685 514881186 1501 True 250.000000 257 79.579000 1014 2418 2 chr7D.!!$R5 1404
2 TraesCS7D01G398500 chr7B 685246504 685249438 2934 True 1896.000000 3391 89.040500 317 3185 2 chr7B.!!$R9 2868
3 TraesCS7D01G398500 chr2A 744641965 744642545 580 True 309.000000 309 76.701000 1029 1603 1 chr2A.!!$R2 574
4 TraesCS7D01G398500 chrUn 77485620 77487164 1544 True 224.666667 285 80.104333 1014 2418 3 chrUn.!!$R3 1404

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
283 284 0.103937 GCCCTCTTCCGAGACTCATG 59.896 60.0 2.82 0.00 39.74 3.07 F
303 304 0.105401 TGTGTGGTGGACCCTCTGTA 60.105 55.0 0.00 0.00 34.29 2.74 F
389 390 0.321298 TAACTTTGGACGCCTCAGGC 60.321 55.0 5.22 5.22 46.75 4.85 F
423 436 0.450184 ACGCACAACTTGTCACCAAC 59.550 50.0 0.00 0.00 0.00 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1638 1884 0.750850 GCCTGAGAAGCGTATACCCA 59.249 55.000 0.0 0.0 0.00 4.51 R
1671 1917 1.625818 AGTTCCCAGTAGAAGCAGTGG 59.374 52.381 0.0 0.0 38.55 4.00 R
2107 2365 2.029110 CGTACCTACCAAACCCGAAAGA 60.029 50.000 0.0 0.0 0.00 2.52 R
2419 2702 7.148457 CGGAGGGAGTAACAGTTTTATTTCTTC 60.148 40.741 0.0 0.0 0.00 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.528041 GTCGTCTCCTCTGTTGGTTT 57.472 50.000 0.00 0.00 0.00 3.27
20 21 2.835027 GTCGTCTCCTCTGTTGGTTTT 58.165 47.619 0.00 0.00 0.00 2.43
21 22 2.801111 GTCGTCTCCTCTGTTGGTTTTC 59.199 50.000 0.00 0.00 0.00 2.29
22 23 2.143925 CGTCTCCTCTGTTGGTTTTCC 58.856 52.381 0.00 0.00 41.14 3.13
33 34 2.584835 TGGTTTTCCATCCACAGGAG 57.415 50.000 0.00 0.00 46.22 3.69
34 35 2.061848 TGGTTTTCCATCCACAGGAGA 58.938 47.619 0.00 0.00 46.22 3.71
35 36 2.649312 TGGTTTTCCATCCACAGGAGAT 59.351 45.455 0.00 0.00 46.22 2.75
36 37 3.282885 GGTTTTCCATCCACAGGAGATC 58.717 50.000 0.00 0.00 40.31 2.75
37 38 3.054065 GGTTTTCCATCCACAGGAGATCT 60.054 47.826 0.00 0.00 40.31 2.75
38 39 4.568592 GGTTTTCCATCCACAGGAGATCTT 60.569 45.833 0.00 0.00 40.31 2.40
39 40 3.920231 TTCCATCCACAGGAGATCTTG 57.080 47.619 0.00 0.00 36.33 3.02
40 41 3.120468 TCCATCCACAGGAGATCTTGA 57.880 47.619 0.00 0.00 34.05 3.02
41 42 2.768527 TCCATCCACAGGAGATCTTGAC 59.231 50.000 0.00 0.00 34.05 3.18
42 43 2.502947 CCATCCACAGGAGATCTTGACA 59.497 50.000 0.00 0.00 34.05 3.58
43 44 3.054875 CCATCCACAGGAGATCTTGACAA 60.055 47.826 0.00 0.00 34.05 3.18
44 45 4.566278 CCATCCACAGGAGATCTTGACAAA 60.566 45.833 0.00 0.00 34.05 2.83
45 46 4.705110 TCCACAGGAGATCTTGACAAAA 57.295 40.909 0.00 0.00 0.00 2.44
46 47 5.047566 TCCACAGGAGATCTTGACAAAAA 57.952 39.130 0.00 0.00 0.00 1.94
47 48 4.821805 TCCACAGGAGATCTTGACAAAAAC 59.178 41.667 0.00 0.00 0.00 2.43
48 49 4.823989 CCACAGGAGATCTTGACAAAAACT 59.176 41.667 0.00 0.00 0.00 2.66
49 50 5.049129 CCACAGGAGATCTTGACAAAAACTC 60.049 44.000 0.00 0.00 0.00 3.01
50 51 5.528690 CACAGGAGATCTTGACAAAAACTCA 59.471 40.000 0.00 0.00 0.00 3.41
51 52 6.206243 CACAGGAGATCTTGACAAAAACTCAT 59.794 38.462 0.00 6.88 0.00 2.90
52 53 6.206243 ACAGGAGATCTTGACAAAAACTCATG 59.794 38.462 18.85 18.85 39.45 3.07
53 54 5.709164 AGGAGATCTTGACAAAAACTCATGG 59.291 40.000 0.00 0.00 0.00 3.66
54 55 5.707298 GGAGATCTTGACAAAAACTCATGGA 59.293 40.000 0.00 0.00 0.00 3.41
55 56 6.376581 GGAGATCTTGACAAAAACTCATGGAT 59.623 38.462 0.00 0.88 0.00 3.41
56 57 7.154435 AGATCTTGACAAAAACTCATGGATG 57.846 36.000 0.00 0.00 0.00 3.51
57 58 6.944290 AGATCTTGACAAAAACTCATGGATGA 59.056 34.615 0.00 0.00 35.16 2.92
72 73 3.971245 GGATGAGGTCCCATCTATCAC 57.029 52.381 15.74 1.34 41.88 3.06
73 74 3.242867 GGATGAGGTCCCATCTATCACA 58.757 50.000 15.74 0.00 41.88 3.58
74 75 3.843027 GGATGAGGTCCCATCTATCACAT 59.157 47.826 15.74 0.00 41.88 3.21
75 76 4.323333 GGATGAGGTCCCATCTATCACATG 60.323 50.000 15.74 0.00 41.88 3.21
76 77 3.657610 TGAGGTCCCATCTATCACATGT 58.342 45.455 0.00 0.00 0.00 3.21
77 78 4.040047 TGAGGTCCCATCTATCACATGTT 58.960 43.478 0.00 0.00 0.00 2.71
78 79 4.474651 TGAGGTCCCATCTATCACATGTTT 59.525 41.667 0.00 0.00 0.00 2.83
79 80 5.041191 AGGTCCCATCTATCACATGTTTC 57.959 43.478 0.00 0.00 0.00 2.78
80 81 4.723789 AGGTCCCATCTATCACATGTTTCT 59.276 41.667 0.00 0.00 0.00 2.52
81 82 4.818546 GGTCCCATCTATCACATGTTTCTG 59.181 45.833 0.00 0.00 0.00 3.02
82 83 4.818546 GTCCCATCTATCACATGTTTCTGG 59.181 45.833 0.00 0.00 0.00 3.86
83 84 4.721274 TCCCATCTATCACATGTTTCTGGA 59.279 41.667 0.00 0.00 0.00 3.86
84 85 5.191522 TCCCATCTATCACATGTTTCTGGAA 59.808 40.000 0.00 0.00 0.00 3.53
85 86 6.066690 CCCATCTATCACATGTTTCTGGAAT 58.933 40.000 0.00 0.00 0.00 3.01
86 87 6.016527 CCCATCTATCACATGTTTCTGGAATG 60.017 42.308 0.00 0.00 0.00 2.67
87 88 6.016527 CCATCTATCACATGTTTCTGGAATGG 60.017 42.308 0.00 0.50 0.00 3.16
88 89 6.312141 TCTATCACATGTTTCTGGAATGGA 57.688 37.500 0.00 0.00 0.00 3.41
89 90 6.351711 TCTATCACATGTTTCTGGAATGGAG 58.648 40.000 0.00 0.00 0.00 3.86
90 91 4.639078 TCACATGTTTCTGGAATGGAGA 57.361 40.909 0.00 0.00 0.00 3.71
91 92 4.326826 TCACATGTTTCTGGAATGGAGAC 58.673 43.478 0.00 0.00 0.00 3.36
92 93 3.125829 CACATGTTTCTGGAATGGAGACG 59.874 47.826 0.00 0.00 0.00 4.18
93 94 1.808411 TGTTTCTGGAATGGAGACGC 58.192 50.000 0.00 0.00 0.00 5.19
94 95 1.087501 GTTTCTGGAATGGAGACGCC 58.912 55.000 0.00 0.00 37.10 5.68
104 105 2.620251 TGGAGACGCCATAATCCTTG 57.380 50.000 0.00 0.00 43.33 3.61
105 106 1.230324 GGAGACGCCATAATCCTTGC 58.770 55.000 0.00 0.00 36.34 4.01
106 107 1.202698 GGAGACGCCATAATCCTTGCT 60.203 52.381 0.00 0.00 36.34 3.91
107 108 2.139118 GAGACGCCATAATCCTTGCTC 58.861 52.381 0.00 0.00 0.00 4.26
108 109 1.202698 AGACGCCATAATCCTTGCTCC 60.203 52.381 0.00 0.00 0.00 4.70
109 110 0.839946 ACGCCATAATCCTTGCTCCT 59.160 50.000 0.00 0.00 0.00 3.69
110 111 1.202698 ACGCCATAATCCTTGCTCCTC 60.203 52.381 0.00 0.00 0.00 3.71
111 112 1.879796 CGCCATAATCCTTGCTCCTCC 60.880 57.143 0.00 0.00 0.00 4.30
112 113 1.423161 GCCATAATCCTTGCTCCTCCT 59.577 52.381 0.00 0.00 0.00 3.69
113 114 2.639839 GCCATAATCCTTGCTCCTCCTA 59.360 50.000 0.00 0.00 0.00 2.94
114 115 3.558109 GCCATAATCCTTGCTCCTCCTAC 60.558 52.174 0.00 0.00 0.00 3.18
115 116 3.306364 CCATAATCCTTGCTCCTCCTACG 60.306 52.174 0.00 0.00 0.00 3.51
116 117 1.867363 AATCCTTGCTCCTCCTACGT 58.133 50.000 0.00 0.00 0.00 3.57
117 118 1.115467 ATCCTTGCTCCTCCTACGTG 58.885 55.000 0.00 0.00 0.00 4.49
118 119 0.251653 TCCTTGCTCCTCCTACGTGT 60.252 55.000 0.00 0.00 0.00 4.49
119 120 0.108615 CCTTGCTCCTCCTACGTGTG 60.109 60.000 0.00 0.00 0.00 3.82
120 121 0.737715 CTTGCTCCTCCTACGTGTGC 60.738 60.000 0.00 0.00 0.00 4.57
121 122 1.468506 TTGCTCCTCCTACGTGTGCA 61.469 55.000 0.00 0.00 0.00 4.57
122 123 1.446272 GCTCCTCCTACGTGTGCAC 60.446 63.158 10.75 10.75 0.00 4.57
123 124 1.964448 CTCCTCCTACGTGTGCACA 59.036 57.895 17.42 17.42 0.00 4.57
124 125 0.532573 CTCCTCCTACGTGTGCACAT 59.467 55.000 24.69 10.81 0.00 3.21
125 126 0.246360 TCCTCCTACGTGTGCACATG 59.754 55.000 32.47 32.47 38.76 3.21
126 127 0.246360 CCTCCTACGTGTGCACATGA 59.754 55.000 38.73 23.27 36.72 3.07
127 128 1.337728 CCTCCTACGTGTGCACATGAA 60.338 52.381 38.73 21.64 36.72 2.57
128 129 2.621338 CTCCTACGTGTGCACATGAAT 58.379 47.619 38.73 23.27 36.72 2.57
129 130 2.604914 CTCCTACGTGTGCACATGAATC 59.395 50.000 38.73 18.73 36.72 2.52
130 131 1.665679 CCTACGTGTGCACATGAATCC 59.334 52.381 38.73 18.02 36.72 3.01
131 132 1.324435 CTACGTGTGCACATGAATCCG 59.676 52.381 38.73 29.00 36.72 4.18
132 133 0.602638 ACGTGTGCACATGAATCCGT 60.603 50.000 38.73 29.61 36.72 4.69
133 134 1.337354 ACGTGTGCACATGAATCCGTA 60.337 47.619 38.73 3.95 36.72 4.02
134 135 1.324435 CGTGTGCACATGAATCCGTAG 59.676 52.381 31.17 5.95 34.90 3.51
135 136 3.867069 CGTGTGCACATGAATCCGTAGG 61.867 54.545 31.17 2.58 41.95 3.18
150 151 3.505464 CGTAGGGAAGACACTTACCAG 57.495 52.381 14.17 2.90 0.00 4.00
151 152 3.087031 CGTAGGGAAGACACTTACCAGA 58.913 50.000 14.17 0.37 0.00 3.86
152 153 3.700038 CGTAGGGAAGACACTTACCAGAT 59.300 47.826 14.17 0.00 0.00 2.90
153 154 4.202030 CGTAGGGAAGACACTTACCAGATC 60.202 50.000 14.17 0.00 0.00 2.75
154 155 3.108376 AGGGAAGACACTTACCAGATCC 58.892 50.000 14.17 0.00 0.00 3.36
155 156 2.159085 GGGAAGACACTTACCAGATCCG 60.159 54.545 7.77 0.00 0.00 4.18
156 157 2.159085 GGAAGACACTTACCAGATCCGG 60.159 54.545 0.00 0.00 0.00 5.14
157 158 2.526888 AGACACTTACCAGATCCGGA 57.473 50.000 6.61 6.61 0.00 5.14
158 159 3.033659 AGACACTTACCAGATCCGGAT 57.966 47.619 19.21 19.21 0.00 4.18
159 160 2.695666 AGACACTTACCAGATCCGGATG 59.304 50.000 24.82 10.32 0.00 3.51
160 161 2.431057 GACACTTACCAGATCCGGATGT 59.569 50.000 24.82 16.65 0.00 3.06
161 162 2.431057 ACACTTACCAGATCCGGATGTC 59.569 50.000 24.82 9.73 0.00 3.06
162 163 2.430694 CACTTACCAGATCCGGATGTCA 59.569 50.000 24.82 4.33 0.00 3.58
163 164 3.104512 ACTTACCAGATCCGGATGTCAA 58.895 45.455 24.82 10.37 0.00 3.18
164 165 3.711704 ACTTACCAGATCCGGATGTCAAT 59.288 43.478 24.82 7.84 0.00 2.57
165 166 2.627515 ACCAGATCCGGATGTCAATG 57.372 50.000 24.82 11.90 0.00 2.82
166 167 1.141657 ACCAGATCCGGATGTCAATGG 59.858 52.381 24.82 21.56 0.00 3.16
167 168 1.544093 CCAGATCCGGATGTCAATGGG 60.544 57.143 24.82 11.24 0.00 4.00
168 169 0.767375 AGATCCGGATGTCAATGGGG 59.233 55.000 24.82 0.00 0.00 4.96
169 170 0.764890 GATCCGGATGTCAATGGGGA 59.235 55.000 24.82 0.00 0.00 4.81
170 171 0.474184 ATCCGGATGTCAATGGGGAC 59.526 55.000 18.33 0.00 38.29 4.46
184 185 2.383608 GGGACCACACCACCATAGT 58.616 57.895 0.00 0.00 0.00 2.12
185 186 0.252197 GGGACCACACCACCATAGTC 59.748 60.000 0.00 0.00 0.00 2.59
186 187 0.981183 GGACCACACCACCATAGTCA 59.019 55.000 0.00 0.00 0.00 3.41
187 188 1.338769 GGACCACACCACCATAGTCAC 60.339 57.143 0.00 0.00 0.00 3.67
188 189 1.623811 GACCACACCACCATAGTCACT 59.376 52.381 0.00 0.00 0.00 3.41
189 190 1.347707 ACCACACCACCATAGTCACTG 59.652 52.381 0.00 0.00 0.00 3.66
190 191 1.442769 CACACCACCATAGTCACTGC 58.557 55.000 0.00 0.00 0.00 4.40
191 192 0.324943 ACACCACCATAGTCACTGCC 59.675 55.000 0.00 0.00 0.00 4.85
192 193 0.740868 CACCACCATAGTCACTGCCG 60.741 60.000 0.00 0.00 0.00 5.69
193 194 1.815421 CCACCATAGTCACTGCCGC 60.815 63.158 0.00 0.00 0.00 6.53
194 195 1.219124 CACCATAGTCACTGCCGCT 59.781 57.895 0.00 0.00 0.00 5.52
195 196 1.086067 CACCATAGTCACTGCCGCTG 61.086 60.000 0.00 0.00 0.00 5.18
196 197 1.219124 CCATAGTCACTGCCGCTGT 59.781 57.895 0.00 0.00 0.00 4.40
197 198 0.391661 CCATAGTCACTGCCGCTGTT 60.392 55.000 0.00 0.00 0.00 3.16
198 199 1.134818 CCATAGTCACTGCCGCTGTTA 60.135 52.381 0.00 0.00 0.00 2.41
199 200 2.196749 CATAGTCACTGCCGCTGTTAG 58.803 52.381 0.00 0.00 0.00 2.34
200 201 1.541379 TAGTCACTGCCGCTGTTAGA 58.459 50.000 0.00 0.00 0.00 2.10
201 202 0.679505 AGTCACTGCCGCTGTTAGAA 59.320 50.000 0.00 0.00 0.00 2.10
202 203 1.071605 GTCACTGCCGCTGTTAGAAG 58.928 55.000 0.00 0.00 0.00 2.85
203 204 0.966179 TCACTGCCGCTGTTAGAAGA 59.034 50.000 0.00 0.00 0.00 2.87
204 205 1.343142 TCACTGCCGCTGTTAGAAGAA 59.657 47.619 0.00 0.00 0.00 2.52
205 206 1.461127 CACTGCCGCTGTTAGAAGAAC 59.539 52.381 0.00 0.00 0.00 3.01
206 207 1.070134 ACTGCCGCTGTTAGAAGAACA 59.930 47.619 0.00 0.00 0.00 3.18
207 208 2.143122 CTGCCGCTGTTAGAAGAACAA 58.857 47.619 0.00 0.00 0.00 2.83
208 209 1.871039 TGCCGCTGTTAGAAGAACAAC 59.129 47.619 0.00 0.00 0.00 3.32
209 210 1.197036 GCCGCTGTTAGAAGAACAACC 59.803 52.381 0.00 0.00 0.00 3.77
210 211 2.489971 CCGCTGTTAGAAGAACAACCA 58.510 47.619 0.00 0.00 0.00 3.67
211 212 2.223377 CCGCTGTTAGAAGAACAACCAC 59.777 50.000 0.00 0.00 0.00 4.16
212 213 2.223377 CGCTGTTAGAAGAACAACCACC 59.777 50.000 0.00 0.00 0.00 4.61
213 214 2.552743 GCTGTTAGAAGAACAACCACCC 59.447 50.000 0.00 0.00 0.00 4.61
214 215 3.146847 CTGTTAGAAGAACAACCACCCC 58.853 50.000 0.00 0.00 0.00 4.95
215 216 2.158579 TGTTAGAAGAACAACCACCCCC 60.159 50.000 0.00 0.00 0.00 5.40
216 217 1.822425 TAGAAGAACAACCACCCCCA 58.178 50.000 0.00 0.00 0.00 4.96
217 218 0.478507 AGAAGAACAACCACCCCCAG 59.521 55.000 0.00 0.00 0.00 4.45
218 219 0.185175 GAAGAACAACCACCCCCAGT 59.815 55.000 0.00 0.00 0.00 4.00
219 220 0.106217 AAGAACAACCACCCCCAGTG 60.106 55.000 0.00 0.00 46.83 3.66
220 221 2.123468 AACAACCACCCCCAGTGC 60.123 61.111 0.00 0.00 45.83 4.40
221 222 2.920076 GAACAACCACCCCCAGTGCA 62.920 60.000 0.00 0.00 45.83 4.57
222 223 2.598394 CAACCACCCCCAGTGCAG 60.598 66.667 0.00 0.00 45.83 4.41
223 224 2.776526 AACCACCCCCAGTGCAGA 60.777 61.111 0.00 0.00 45.83 4.26
224 225 2.391130 AACCACCCCCAGTGCAGAA 61.391 57.895 0.00 0.00 45.83 3.02
225 226 1.943730 AACCACCCCCAGTGCAGAAA 61.944 55.000 0.00 0.00 45.83 2.52
226 227 1.077265 CCACCCCCAGTGCAGAAAT 59.923 57.895 0.00 0.00 45.83 2.17
227 228 0.967380 CCACCCCCAGTGCAGAAATC 60.967 60.000 0.00 0.00 45.83 2.17
228 229 0.967380 CACCCCCAGTGCAGAAATCC 60.967 60.000 0.00 0.00 40.28 3.01
229 230 1.142688 ACCCCCAGTGCAGAAATCCT 61.143 55.000 0.00 0.00 0.00 3.24
230 231 0.918983 CCCCCAGTGCAGAAATCCTA 59.081 55.000 0.00 0.00 0.00 2.94
231 232 1.133976 CCCCCAGTGCAGAAATCCTAG 60.134 57.143 0.00 0.00 0.00 3.02
232 233 1.839994 CCCCAGTGCAGAAATCCTAGA 59.160 52.381 0.00 0.00 0.00 2.43
233 234 2.420687 CCCCAGTGCAGAAATCCTAGAC 60.421 54.545 0.00 0.00 0.00 2.59
234 235 2.503356 CCCAGTGCAGAAATCCTAGACT 59.497 50.000 0.00 0.00 0.00 3.24
235 236 3.054802 CCCAGTGCAGAAATCCTAGACTT 60.055 47.826 0.00 0.00 0.00 3.01
236 237 3.937706 CCAGTGCAGAAATCCTAGACTTG 59.062 47.826 0.00 0.00 0.00 3.16
237 238 3.937706 CAGTGCAGAAATCCTAGACTTGG 59.062 47.826 0.00 0.00 0.00 3.61
238 239 2.680339 GTGCAGAAATCCTAGACTTGGC 59.320 50.000 0.00 0.00 0.00 4.52
239 240 2.305635 TGCAGAAATCCTAGACTTGGCA 59.694 45.455 0.00 0.00 0.00 4.92
240 241 3.054139 TGCAGAAATCCTAGACTTGGCAT 60.054 43.478 0.00 0.00 0.00 4.40
241 242 3.950395 GCAGAAATCCTAGACTTGGCATT 59.050 43.478 0.00 0.00 0.00 3.56
242 243 4.201990 GCAGAAATCCTAGACTTGGCATTG 60.202 45.833 0.00 0.00 0.00 2.82
243 244 3.950395 AGAAATCCTAGACTTGGCATTGC 59.050 43.478 0.00 0.00 0.00 3.56
254 255 3.403936 GGCATTGCCTACCGATCTT 57.596 52.632 20.66 0.00 46.69 2.40
255 256 1.230324 GGCATTGCCTACCGATCTTC 58.770 55.000 20.66 0.00 46.69 2.87
256 257 0.861837 GCATTGCCTACCGATCTTCG 59.138 55.000 0.00 0.00 40.07 3.79
257 258 1.806623 GCATTGCCTACCGATCTTCGT 60.807 52.381 0.00 0.00 38.40 3.85
258 259 1.860950 CATTGCCTACCGATCTTCGTG 59.139 52.381 0.00 0.00 38.40 4.35
259 260 0.459585 TTGCCTACCGATCTTCGTGC 60.460 55.000 0.00 0.00 38.40 5.34
260 261 1.141019 GCCTACCGATCTTCGTGCA 59.859 57.895 0.00 0.00 38.40 4.57
261 262 0.459585 GCCTACCGATCTTCGTGCAA 60.460 55.000 0.00 0.00 38.40 4.08
262 263 1.806623 GCCTACCGATCTTCGTGCAAT 60.807 52.381 0.00 0.00 38.40 3.56
263 264 2.128035 CCTACCGATCTTCGTGCAATC 58.872 52.381 0.00 0.00 38.40 2.67
264 265 1.781429 CTACCGATCTTCGTGCAATCG 59.219 52.381 10.13 10.13 41.40 3.34
265 266 1.273887 CCGATCTTCGTGCAATCGC 59.726 57.895 11.37 0.00 40.62 4.58
266 267 1.273887 CGATCTTCGTGCAATCGCC 59.726 57.895 4.91 0.00 36.28 5.54
267 268 1.643832 GATCTTCGTGCAATCGCCC 59.356 57.895 0.00 0.00 37.32 6.13
268 269 0.811616 GATCTTCGTGCAATCGCCCT 60.812 55.000 0.00 0.00 37.32 5.19
269 270 0.811616 ATCTTCGTGCAATCGCCCTC 60.812 55.000 0.00 0.00 37.32 4.30
270 271 1.448540 CTTCGTGCAATCGCCCTCT 60.449 57.895 0.00 0.00 37.32 3.69
271 272 1.003839 TTCGTGCAATCGCCCTCTT 60.004 52.632 0.00 0.00 37.32 2.85
272 273 1.019278 TTCGTGCAATCGCCCTCTTC 61.019 55.000 0.00 0.00 37.32 2.87
273 274 2.464459 CGTGCAATCGCCCTCTTCC 61.464 63.158 0.00 0.00 37.32 3.46
274 275 2.125147 TGCAATCGCCCTCTTCCG 60.125 61.111 0.00 0.00 37.32 4.30
275 276 2.186903 GCAATCGCCCTCTTCCGA 59.813 61.111 0.00 0.00 37.91 4.55
276 277 1.884926 GCAATCGCCCTCTTCCGAG 60.885 63.158 0.00 0.00 36.86 4.63
277 278 1.816537 CAATCGCCCTCTTCCGAGA 59.183 57.895 0.00 0.00 39.74 4.04
278 279 0.528684 CAATCGCCCTCTTCCGAGAC 60.529 60.000 0.00 0.00 39.74 3.36
279 280 0.684805 AATCGCCCTCTTCCGAGACT 60.685 55.000 0.00 0.00 39.74 3.24
280 281 1.104577 ATCGCCCTCTTCCGAGACTC 61.105 60.000 0.00 0.00 39.74 3.36
281 282 2.046864 CGCCCTCTTCCGAGACTCA 61.047 63.158 2.82 0.00 39.74 3.41
282 283 1.388065 CGCCCTCTTCCGAGACTCAT 61.388 60.000 2.82 0.00 39.74 2.90
283 284 0.103937 GCCCTCTTCCGAGACTCATG 59.896 60.000 2.82 0.00 39.74 3.07
284 285 1.479709 CCCTCTTCCGAGACTCATGT 58.520 55.000 2.82 0.00 39.74 3.21
285 286 1.135915 CCCTCTTCCGAGACTCATGTG 59.864 57.143 2.82 0.00 39.74 3.21
286 287 1.821753 CCTCTTCCGAGACTCATGTGT 59.178 52.381 0.00 0.00 39.74 3.72
287 288 2.416566 CCTCTTCCGAGACTCATGTGTG 60.417 54.545 4.90 0.00 39.74 3.82
288 289 2.230025 CTCTTCCGAGACTCATGTGTGT 59.770 50.000 4.90 0.39 39.74 3.72
289 290 2.029918 TCTTCCGAGACTCATGTGTGTG 60.030 50.000 4.90 0.00 0.00 3.82
290 291 0.603065 TCCGAGACTCATGTGTGTGG 59.397 55.000 4.90 2.61 0.00 4.17
291 292 0.318441 CCGAGACTCATGTGTGTGGT 59.682 55.000 4.90 0.00 0.00 4.16
292 293 1.422388 CGAGACTCATGTGTGTGGTG 58.578 55.000 4.90 0.00 0.00 4.17
293 294 1.800805 GAGACTCATGTGTGTGGTGG 58.199 55.000 4.90 0.00 0.00 4.61
294 295 1.344438 GAGACTCATGTGTGTGGTGGA 59.656 52.381 4.90 0.00 0.00 4.02
295 296 1.070758 AGACTCATGTGTGTGGTGGAC 59.929 52.381 4.90 0.00 0.00 4.02
296 297 0.108585 ACTCATGTGTGTGGTGGACC 59.891 55.000 0.00 0.00 0.00 4.46
297 298 0.606401 CTCATGTGTGTGGTGGACCC 60.606 60.000 0.00 0.00 34.29 4.46
298 299 1.059584 TCATGTGTGTGGTGGACCCT 61.060 55.000 0.00 0.00 34.29 4.34
299 300 0.606401 CATGTGTGTGGTGGACCCTC 60.606 60.000 0.00 0.00 34.29 4.30
300 301 0.768221 ATGTGTGTGGTGGACCCTCT 60.768 55.000 0.00 0.00 34.29 3.69
301 302 1.071471 GTGTGTGGTGGACCCTCTG 59.929 63.158 0.00 0.00 34.29 3.35
302 303 1.383943 TGTGTGGTGGACCCTCTGT 60.384 57.895 0.00 0.00 34.29 3.41
303 304 0.105401 TGTGTGGTGGACCCTCTGTA 60.105 55.000 0.00 0.00 34.29 2.74
304 305 1.276622 GTGTGGTGGACCCTCTGTAT 58.723 55.000 0.00 0.00 34.29 2.29
305 306 1.207329 GTGTGGTGGACCCTCTGTATC 59.793 57.143 0.00 0.00 34.29 2.24
306 307 1.078823 TGTGGTGGACCCTCTGTATCT 59.921 52.381 0.00 0.00 34.29 1.98
307 308 2.313643 TGTGGTGGACCCTCTGTATCTA 59.686 50.000 0.00 0.00 34.29 1.98
308 309 3.052109 TGTGGTGGACCCTCTGTATCTAT 60.052 47.826 0.00 0.00 34.29 1.98
309 310 3.574826 GTGGTGGACCCTCTGTATCTATC 59.425 52.174 0.00 0.00 34.29 2.08
310 311 3.166679 GGTGGACCCTCTGTATCTATCC 58.833 54.545 0.00 0.00 0.00 2.59
311 312 3.166679 GTGGACCCTCTGTATCTATCCC 58.833 54.545 0.00 0.00 0.00 3.85
312 313 2.225041 TGGACCCTCTGTATCTATCCCG 60.225 54.545 0.00 0.00 0.00 5.14
313 314 2.448453 GACCCTCTGTATCTATCCCGG 58.552 57.143 0.00 0.00 0.00 5.73
314 315 2.041350 GACCCTCTGTATCTATCCCGGA 59.959 54.545 0.73 0.00 0.00 5.14
315 316 2.655407 ACCCTCTGTATCTATCCCGGAT 59.345 50.000 0.73 4.99 0.00 4.18
331 332 3.432186 CCCGGATGCTTGTAAGATCTTGA 60.432 47.826 18.47 1.49 0.00 3.02
337 338 7.172190 CGGATGCTTGTAAGATCTTGAATATGT 59.828 37.037 18.47 0.00 0.00 2.29
362 363 9.604626 GTACAATTTGAGCTTAATATGCATCTC 57.395 33.333 0.19 2.88 0.00 2.75
363 364 7.655490 ACAATTTGAGCTTAATATGCATCTCC 58.345 34.615 0.19 0.00 0.00 3.71
367 368 4.039124 TGAGCTTAATATGCATCTCCGTCA 59.961 41.667 0.19 0.00 0.00 4.35
389 390 0.321298 TAACTTTGGACGCCTCAGGC 60.321 55.000 5.22 5.22 46.75 4.85
421 434 1.987704 GCACGCACAACTTGTCACCA 61.988 55.000 0.00 0.00 0.00 4.17
423 436 0.450184 ACGCACAACTTGTCACCAAC 59.550 50.000 0.00 0.00 0.00 3.77
438 451 2.431942 AACGGACATGGCGTCGTC 60.432 61.111 3.21 0.00 46.42 4.20
460 475 5.175126 GTCGTGCTCGTACATAAATATTGCT 59.825 40.000 8.17 0.00 38.33 3.91
462 477 6.065153 CGTGCTCGTACATAAATATTGCTTC 58.935 40.000 0.00 0.00 0.00 3.86
474 489 8.562892 CATAAATATTGCTTCCCAAGTGTCTAG 58.437 37.037 0.00 0.00 36.76 2.43
534 549 1.978617 CAAGGGCCGCTTCCATTGT 60.979 57.895 0.00 0.00 41.50 2.71
543 558 2.159476 CCGCTTCCATTGTCACATTGAG 60.159 50.000 1.04 0.00 0.00 3.02
560 575 1.281899 GAGTGCGTAACTGGATGCTC 58.718 55.000 0.00 0.00 40.07 4.26
572 587 7.852945 CGTAACTGGATGCTCATATTCTTTTTC 59.147 37.037 0.00 0.00 0.00 2.29
573 588 7.707624 AACTGGATGCTCATATTCTTTTTCA 57.292 32.000 0.00 0.00 0.00 2.69
574 589 7.330900 ACTGGATGCTCATATTCTTTTTCAG 57.669 36.000 0.00 0.00 0.00 3.02
575 590 6.888632 ACTGGATGCTCATATTCTTTTTCAGT 59.111 34.615 0.00 0.00 0.00 3.41
604 619 9.036671 GTTGGTTTTCGAGAAAATTTCCATTTA 57.963 29.630 13.24 1.35 41.64 1.40
613 628 9.278734 CGAGAAAATTTCCATTTAGTTTCTAGC 57.721 33.333 1.57 0.00 35.91 3.42
741 787 1.001974 GGCCATGTTCCCCAAGTTTTC 59.998 52.381 0.00 0.00 0.00 2.29
742 788 1.001974 GCCATGTTCCCCAAGTTTTCC 59.998 52.381 0.00 0.00 0.00 3.13
745 791 4.156477 CCATGTTCCCCAAGTTTTCCTAA 58.844 43.478 0.00 0.00 0.00 2.69
746 792 4.220602 CCATGTTCCCCAAGTTTTCCTAAG 59.779 45.833 0.00 0.00 0.00 2.18
747 793 4.529716 TGTTCCCCAAGTTTTCCTAAGT 57.470 40.909 0.00 0.00 0.00 2.24
749 795 4.079672 TGTTCCCCAAGTTTTCCTAAGTGA 60.080 41.667 0.00 0.00 0.00 3.41
753 799 4.327680 CCCAAGTTTTCCTAAGTGAGAGG 58.672 47.826 0.00 0.00 35.17 3.69
754 800 3.753797 CCAAGTTTTCCTAAGTGAGAGGC 59.246 47.826 0.00 0.00 33.73 4.70
755 801 4.505742 CCAAGTTTTCCTAAGTGAGAGGCT 60.506 45.833 0.00 0.00 33.73 4.58
756 802 4.278975 AGTTTTCCTAAGTGAGAGGCTG 57.721 45.455 0.00 0.00 33.73 4.85
757 803 3.008485 AGTTTTCCTAAGTGAGAGGCTGG 59.992 47.826 0.00 0.00 33.73 4.85
758 804 1.573108 TTCCTAAGTGAGAGGCTGGG 58.427 55.000 0.00 0.00 33.73 4.45
807 853 2.440247 GGGCCCAAAGATGACCGG 60.440 66.667 19.95 0.00 0.00 5.28
826 872 2.004733 GGTACACGAAACATACTGGCC 58.995 52.381 0.00 0.00 0.00 5.36
861 907 2.601481 GGCACACGAGAAAATCACTG 57.399 50.000 0.00 0.00 0.00 3.66
862 908 1.197721 GGCACACGAGAAAATCACTGG 59.802 52.381 0.00 0.00 0.00 4.00
865 911 2.158449 CACACGAGAAAATCACTGGCTC 59.842 50.000 0.00 0.00 0.00 4.70
875 953 2.205462 ACTGGCTCCCTCCACACT 59.795 61.111 0.00 0.00 31.74 3.55
881 959 2.523168 TCCCTCCACACTGCGTCA 60.523 61.111 0.00 0.00 0.00 4.35
945 1023 1.881324 GACAGCCTAGATCTCCCGTAC 59.119 57.143 0.00 0.00 0.00 3.67
986 1064 2.125350 CTCCTCCACCTTGCTCGC 60.125 66.667 0.00 0.00 0.00 5.03
988 1066 4.379243 CCTCCACCTTGCTCGCGT 62.379 66.667 5.77 0.00 0.00 6.01
1005 1083 4.440829 TCCGGCAGGGAAATGGCC 62.441 66.667 2.05 0.00 43.62 5.36
1027 1105 4.473520 CCTCGCCGCTGGTGGATT 62.474 66.667 4.18 0.00 33.43 3.01
1135 1216 4.773117 GCCTCGTCACCGACCGAC 62.773 72.222 0.00 0.00 38.40 4.79
1494 1698 1.975407 CTGGTGCCAGCCTTTCCTG 60.975 63.158 5.19 0.00 37.24 3.86
1559 1805 5.013704 TCTGGGTGGTACATTGTGAAACTAT 59.986 40.000 0.00 0.00 44.52 2.12
1635 1881 2.591571 TGACCAGATTGATCTCAGCG 57.408 50.000 0.00 0.00 34.22 5.18
1638 1884 2.100584 GACCAGATTGATCTCAGCGACT 59.899 50.000 0.00 0.00 34.22 4.18
1761 2010 1.763770 CTTTGCTGACCTCCCACCT 59.236 57.895 0.00 0.00 0.00 4.00
2078 2336 9.837525 GGAATGCATTTCAATAGATATCAAGAC 57.162 33.333 14.33 0.00 35.94 3.01
2107 2365 3.808618 GCTTGAGAGGGTTTGTGTCAGAT 60.809 47.826 0.00 0.00 0.00 2.90
2411 2694 9.669353 CATAGTTATGCATCCACTGTTATTTTC 57.331 33.333 17.84 0.00 0.00 2.29
2419 2702 7.171167 TGCATCCACTGTTATTTTCAACATTTG 59.829 33.333 0.00 0.00 37.75 2.32
2458 2742 4.974399 ACTCCCTCCGATCCAATTAATTC 58.026 43.478 0.00 0.00 0.00 2.17
2468 2752 2.682856 TCCAATTAATTCACGCAGCCTC 59.317 45.455 0.00 0.00 0.00 4.70
2519 2821 2.231721 GGATCGGAGGGAGTATTGTAGC 59.768 54.545 0.00 0.00 0.00 3.58
2520 2822 1.700955 TCGGAGGGAGTATTGTAGCC 58.299 55.000 0.00 0.00 0.00 3.93
2521 2823 1.217183 TCGGAGGGAGTATTGTAGCCT 59.783 52.381 0.00 0.00 0.00 4.58
2522 2824 1.341531 CGGAGGGAGTATTGTAGCCTG 59.658 57.143 0.00 0.00 0.00 4.85
2523 2825 2.399580 GGAGGGAGTATTGTAGCCTGT 58.600 52.381 0.00 0.00 0.00 4.00
2524 2826 3.573695 GGAGGGAGTATTGTAGCCTGTA 58.426 50.000 0.00 0.00 0.00 2.74
2525 2827 3.574826 GGAGGGAGTATTGTAGCCTGTAG 59.425 52.174 0.00 0.00 0.00 2.74
2577 2879 5.050634 TCACAACAATTACTTTCGAGGAACG 60.051 40.000 0.00 0.00 44.09 3.95
2592 2894 0.790814 GAACGCTTTTCAGGGACTCG 59.209 55.000 0.00 0.00 34.60 4.18
2675 2977 4.621034 ACGAAAATCATTTCATTCAACCGC 59.379 37.500 0.00 0.00 44.24 5.68
2700 3002 5.356470 AGCTCATCTTGTCTGCTTTTTATCC 59.644 40.000 0.00 0.00 0.00 2.59
2708 3012 8.567948 TCTTGTCTGCTTTTTATCCTTTGTAAG 58.432 33.333 0.00 0.00 0.00 2.34
2757 3061 6.321435 ACTCTTGGTCATATTCACGTCTATGA 59.679 38.462 7.55 7.55 33.16 2.15
2758 3062 7.014711 ACTCTTGGTCATATTCACGTCTATGAT 59.985 37.037 12.58 0.00 36.89 2.45
2810 3114 8.565896 AATCTGACATAGCAGTAACAATTCAA 57.434 30.769 0.00 0.00 37.20 2.69
2813 3117 5.163864 TGACATAGCAGTAACAATTCAAGCG 60.164 40.000 0.00 0.00 0.00 4.68
2859 3170 7.977818 TCTGCCTCATAAGATTGGTTATATGT 58.022 34.615 0.00 0.00 0.00 2.29
2889 3200 8.421784 GTTCCCAGTTTTTCTTTCTATTTCCTT 58.578 33.333 0.00 0.00 0.00 3.36
2926 3237 8.593945 AGAACAATATTATTTGCCTCTTTCCA 57.406 30.769 0.00 0.00 0.00 3.53
2933 3244 3.576078 TTTGCCTCTTTCCAAGTCTCA 57.424 42.857 0.00 0.00 0.00 3.27
2935 3246 1.768275 TGCCTCTTTCCAAGTCTCACA 59.232 47.619 0.00 0.00 0.00 3.58
2959 3270 5.247564 AGGCATGCCAAATATAAGCATCAAT 59.752 36.000 37.18 8.47 45.16 2.57
2960 3271 5.935789 GGCATGCCAAATATAAGCATCAATT 59.064 36.000 32.08 0.00 45.16 2.32
2962 3273 7.295201 GCATGCCAAATATAAGCATCAATTTG 58.705 34.615 6.36 7.31 45.16 2.32
2964 3275 7.773864 TGCCAAATATAAGCATCAATTTGTG 57.226 32.000 11.29 0.00 37.53 3.33
2965 3276 7.329499 TGCCAAATATAAGCATCAATTTGTGT 58.671 30.769 11.29 0.00 37.53 3.72
2966 3277 8.473219 TGCCAAATATAAGCATCAATTTGTGTA 58.527 29.630 11.29 3.63 37.53 2.90
2967 3278 8.971321 GCCAAATATAAGCATCAATTTGTGTAG 58.029 33.333 11.29 1.70 37.53 2.74
2968 3279 8.971321 CCAAATATAAGCATCAATTTGTGTAGC 58.029 33.333 11.29 0.00 37.53 3.58
2969 3280 9.518906 CAAATATAAGCATCAATTTGTGTAGCA 57.481 29.630 0.00 0.00 35.55 3.49
2971 3282 9.740239 AATATAAGCATCAATTTGTGTAGCAAG 57.260 29.630 0.00 0.00 38.47 4.01
2972 3283 3.841643 AGCATCAATTTGTGTAGCAAGC 58.158 40.909 0.00 0.00 38.47 4.01
2973 3284 3.508793 AGCATCAATTTGTGTAGCAAGCT 59.491 39.130 0.00 0.00 38.47 3.74
2974 3285 4.701651 AGCATCAATTTGTGTAGCAAGCTA 59.298 37.500 0.00 0.00 38.47 3.32
2975 3286 5.032863 GCATCAATTTGTGTAGCAAGCTAG 58.967 41.667 1.29 0.00 38.47 3.42
2976 3287 5.163723 GCATCAATTTGTGTAGCAAGCTAGA 60.164 40.000 1.29 0.00 38.47 2.43
2986 3297 1.679311 CAAGCTAGAGGGCACACCA 59.321 57.895 0.00 0.00 43.89 4.17
2987 3298 0.674895 CAAGCTAGAGGGCACACCAC 60.675 60.000 0.00 0.00 43.89 4.16
2997 3308 1.439353 GGCACACCACAGACACACAG 61.439 60.000 0.00 0.00 35.26 3.66
3021 3332 1.022982 TCGATTGCAGCTGCCAAGAG 61.023 55.000 34.64 22.63 41.18 2.85
3116 3427 7.388437 AGACTACTAGGTAATATGGAGAGTCG 58.612 42.308 0.00 0.00 35.78 4.18
3127 3438 1.174783 GGAGAGTCGTGTAAGGCTGA 58.825 55.000 0.00 0.00 0.00 4.26
3132 3443 4.642429 AGAGTCGTGTAAGGCTGAAAAAT 58.358 39.130 0.00 0.00 0.00 1.82
3159 3470 7.655236 ATCTATCTCTTTTGCATGATCGAAG 57.345 36.000 0.00 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.528041 AAACCAACAGAGGAGACGAC 57.472 50.000 0.00 0.00 0.00 4.34
1 2 2.224209 GGAAAACCAACAGAGGAGACGA 60.224 50.000 0.00 0.00 0.00 4.20
2 3 2.143925 GGAAAACCAACAGAGGAGACG 58.856 52.381 0.00 0.00 0.00 4.18
3 4 3.208747 TGGAAAACCAACAGAGGAGAC 57.791 47.619 0.00 0.00 0.00 3.36
4 5 3.244911 GGATGGAAAACCAACAGAGGAGA 60.245 47.826 0.00 0.00 0.00 3.71
5 6 3.084786 GGATGGAAAACCAACAGAGGAG 58.915 50.000 0.00 0.00 0.00 3.69
6 7 2.445145 TGGATGGAAAACCAACAGAGGA 59.555 45.455 0.00 0.00 32.93 3.71
7 8 2.558359 GTGGATGGAAAACCAACAGAGG 59.442 50.000 0.00 0.00 37.94 3.69
8 9 3.221771 TGTGGATGGAAAACCAACAGAG 58.778 45.455 0.00 0.00 37.94 3.35
9 10 3.221771 CTGTGGATGGAAAACCAACAGA 58.778 45.455 11.72 4.62 37.42 3.41
10 11 2.297033 CCTGTGGATGGAAAACCAACAG 59.703 50.000 10.69 10.69 37.94 3.16
11 12 2.091610 TCCTGTGGATGGAAAACCAACA 60.092 45.455 0.00 0.00 37.94 3.33
12 13 2.558359 CTCCTGTGGATGGAAAACCAAC 59.442 50.000 0.00 0.00 37.94 3.77
13 14 2.445145 TCTCCTGTGGATGGAAAACCAA 59.555 45.455 0.00 0.00 37.94 3.67
14 15 2.061848 TCTCCTGTGGATGGAAAACCA 58.938 47.619 0.00 0.00 32.61 3.67
15 16 2.879103 TCTCCTGTGGATGGAAAACC 57.121 50.000 0.00 0.00 32.61 3.27
16 17 4.227864 AGATCTCCTGTGGATGGAAAAC 57.772 45.455 0.00 0.00 32.61 2.43
17 18 4.289410 TCAAGATCTCCTGTGGATGGAAAA 59.711 41.667 0.00 0.00 32.61 2.29
18 19 3.845992 TCAAGATCTCCTGTGGATGGAAA 59.154 43.478 0.00 0.00 32.61 3.13
19 20 3.198635 GTCAAGATCTCCTGTGGATGGAA 59.801 47.826 0.00 0.00 32.61 3.53
20 21 2.768527 GTCAAGATCTCCTGTGGATGGA 59.231 50.000 0.00 0.00 0.00 3.41
21 22 2.502947 TGTCAAGATCTCCTGTGGATGG 59.497 50.000 0.00 0.00 0.00 3.51
22 23 3.900966 TGTCAAGATCTCCTGTGGATG 57.099 47.619 0.00 0.00 0.00 3.51
23 24 4.916041 TTTGTCAAGATCTCCTGTGGAT 57.084 40.909 0.00 0.00 0.00 3.41
24 25 4.705110 TTTTGTCAAGATCTCCTGTGGA 57.295 40.909 0.00 0.00 0.00 4.02
25 26 4.823989 AGTTTTTGTCAAGATCTCCTGTGG 59.176 41.667 0.00 0.00 0.00 4.17
26 27 5.528690 TGAGTTTTTGTCAAGATCTCCTGTG 59.471 40.000 0.00 0.00 0.00 3.66
27 28 5.684704 TGAGTTTTTGTCAAGATCTCCTGT 58.315 37.500 0.00 0.00 0.00 4.00
28 29 6.349115 CCATGAGTTTTTGTCAAGATCTCCTG 60.349 42.308 0.00 10.22 0.00 3.86
29 30 5.709164 CCATGAGTTTTTGTCAAGATCTCCT 59.291 40.000 0.00 0.89 0.00 3.69
30 31 5.707298 TCCATGAGTTTTTGTCAAGATCTCC 59.293 40.000 0.00 0.00 0.00 3.71
31 32 6.808008 TCCATGAGTTTTTGTCAAGATCTC 57.192 37.500 0.00 7.07 0.00 2.75
32 33 6.944290 TCATCCATGAGTTTTTGTCAAGATCT 59.056 34.615 0.00 0.00 32.11 2.75
33 34 7.149569 TCATCCATGAGTTTTTGTCAAGATC 57.850 36.000 0.00 0.00 32.11 2.75
53 54 4.285517 ACATGTGATAGATGGGACCTCATC 59.714 45.833 0.00 12.60 42.73 2.92
54 55 4.237843 ACATGTGATAGATGGGACCTCAT 58.762 43.478 0.00 0.00 0.00 2.90
55 56 3.657610 ACATGTGATAGATGGGACCTCA 58.342 45.455 0.00 0.00 0.00 3.86
56 57 4.696479 AACATGTGATAGATGGGACCTC 57.304 45.455 0.00 0.00 0.00 3.85
57 58 4.723789 AGAAACATGTGATAGATGGGACCT 59.276 41.667 0.00 0.00 0.00 3.85
58 59 4.818546 CAGAAACATGTGATAGATGGGACC 59.181 45.833 0.00 0.00 0.00 4.46
59 60 4.818546 CCAGAAACATGTGATAGATGGGAC 59.181 45.833 0.00 0.00 0.00 4.46
60 61 4.721274 TCCAGAAACATGTGATAGATGGGA 59.279 41.667 0.00 0.00 0.00 4.37
61 62 5.039920 TCCAGAAACATGTGATAGATGGG 57.960 43.478 0.00 0.00 0.00 4.00
62 63 6.016527 CCATTCCAGAAACATGTGATAGATGG 60.017 42.308 0.00 4.49 0.00 3.51
63 64 6.769341 TCCATTCCAGAAACATGTGATAGATG 59.231 38.462 0.00 0.00 0.00 2.90
64 65 6.903516 TCCATTCCAGAAACATGTGATAGAT 58.096 36.000 0.00 0.00 0.00 1.98
65 66 6.156775 TCTCCATTCCAGAAACATGTGATAGA 59.843 38.462 0.00 0.00 0.00 1.98
66 67 6.259608 GTCTCCATTCCAGAAACATGTGATAG 59.740 42.308 0.00 0.00 0.00 2.08
67 68 6.115446 GTCTCCATTCCAGAAACATGTGATA 58.885 40.000 0.00 0.00 0.00 2.15
68 69 4.946157 GTCTCCATTCCAGAAACATGTGAT 59.054 41.667 0.00 0.00 0.00 3.06
69 70 4.326826 GTCTCCATTCCAGAAACATGTGA 58.673 43.478 0.00 0.00 0.00 3.58
70 71 3.125829 CGTCTCCATTCCAGAAACATGTG 59.874 47.826 0.00 0.00 0.00 3.21
71 72 3.338249 CGTCTCCATTCCAGAAACATGT 58.662 45.455 0.00 0.00 0.00 3.21
72 73 2.096496 GCGTCTCCATTCCAGAAACATG 59.904 50.000 0.00 0.00 0.00 3.21
73 74 2.359900 GCGTCTCCATTCCAGAAACAT 58.640 47.619 0.00 0.00 0.00 2.71
74 75 1.610624 GGCGTCTCCATTCCAGAAACA 60.611 52.381 0.00 0.00 34.01 2.83
75 76 1.087501 GGCGTCTCCATTCCAGAAAC 58.912 55.000 0.00 0.00 34.01 2.78
76 77 0.690192 TGGCGTCTCCATTCCAGAAA 59.310 50.000 0.00 0.00 40.72 2.52
77 78 2.371784 TGGCGTCTCCATTCCAGAA 58.628 52.632 0.00 0.00 40.72 3.02
78 79 4.128580 TGGCGTCTCCATTCCAGA 57.871 55.556 0.00 0.00 40.72 3.86
86 87 1.202698 AGCAAGGATTATGGCGTCTCC 60.203 52.381 0.00 0.98 0.00 3.71
87 88 2.139118 GAGCAAGGATTATGGCGTCTC 58.861 52.381 0.00 0.00 0.00 3.36
88 89 1.202698 GGAGCAAGGATTATGGCGTCT 60.203 52.381 0.00 0.00 0.00 4.18
89 90 1.202698 AGGAGCAAGGATTATGGCGTC 60.203 52.381 0.00 0.00 0.00 5.19
90 91 0.839946 AGGAGCAAGGATTATGGCGT 59.160 50.000 0.00 0.00 0.00 5.68
91 92 1.517242 GAGGAGCAAGGATTATGGCG 58.483 55.000 0.00 0.00 0.00 5.69
92 93 1.423161 AGGAGGAGCAAGGATTATGGC 59.577 52.381 0.00 0.00 0.00 4.40
93 94 3.306364 CGTAGGAGGAGCAAGGATTATGG 60.306 52.174 0.00 0.00 0.00 2.74
94 95 3.322254 ACGTAGGAGGAGCAAGGATTATG 59.678 47.826 0.00 0.00 0.00 1.90
95 96 3.322254 CACGTAGGAGGAGCAAGGATTAT 59.678 47.826 0.00 0.00 0.00 1.28
96 97 2.693591 CACGTAGGAGGAGCAAGGATTA 59.306 50.000 0.00 0.00 0.00 1.75
97 98 1.482593 CACGTAGGAGGAGCAAGGATT 59.517 52.381 0.00 0.00 0.00 3.01
98 99 1.115467 CACGTAGGAGGAGCAAGGAT 58.885 55.000 0.00 0.00 0.00 3.24
99 100 0.251653 ACACGTAGGAGGAGCAAGGA 60.252 55.000 0.00 0.00 0.00 3.36
100 101 0.108615 CACACGTAGGAGGAGCAAGG 60.109 60.000 0.00 0.00 0.00 3.61
101 102 0.737715 GCACACGTAGGAGGAGCAAG 60.738 60.000 0.00 0.00 0.00 4.01
102 103 1.292223 GCACACGTAGGAGGAGCAA 59.708 57.895 0.00 0.00 0.00 3.91
103 104 1.906333 TGCACACGTAGGAGGAGCA 60.906 57.895 0.00 0.00 0.00 4.26
104 105 1.446272 GTGCACACGTAGGAGGAGC 60.446 63.158 13.17 0.00 0.00 4.70
105 106 0.532573 ATGTGCACACGTAGGAGGAG 59.467 55.000 24.37 0.00 0.00 3.69
106 107 0.246360 CATGTGCACACGTAGGAGGA 59.754 55.000 24.37 0.00 0.00 3.71
107 108 0.246360 TCATGTGCACACGTAGGAGG 59.754 55.000 24.37 0.00 0.00 4.30
108 109 2.078849 TTCATGTGCACACGTAGGAG 57.921 50.000 24.37 6.40 0.00 3.69
109 110 2.616960 GATTCATGTGCACACGTAGGA 58.383 47.619 24.37 11.94 0.00 2.94
110 111 1.665679 GGATTCATGTGCACACGTAGG 59.334 52.381 24.37 9.68 0.00 3.18
111 112 1.324435 CGGATTCATGTGCACACGTAG 59.676 52.381 24.37 12.65 0.00 3.51
112 113 1.337354 ACGGATTCATGTGCACACGTA 60.337 47.619 24.37 8.50 0.00 3.57
113 114 0.602638 ACGGATTCATGTGCACACGT 60.603 50.000 24.37 22.30 0.00 4.49
114 115 1.324435 CTACGGATTCATGTGCACACG 59.676 52.381 24.37 21.60 0.00 4.49
115 116 1.665679 CCTACGGATTCATGTGCACAC 59.334 52.381 24.37 8.94 0.00 3.82
116 117 1.406751 CCCTACGGATTCATGTGCACA 60.407 52.381 24.08 24.08 0.00 4.57
117 118 1.134521 TCCCTACGGATTCATGTGCAC 60.135 52.381 10.75 10.75 31.13 4.57
118 119 1.199615 TCCCTACGGATTCATGTGCA 58.800 50.000 0.00 0.00 31.13 4.57
119 120 2.158957 TCTTCCCTACGGATTCATGTGC 60.159 50.000 0.00 0.00 38.24 4.57
120 121 3.118775 TGTCTTCCCTACGGATTCATGTG 60.119 47.826 0.00 0.00 38.24 3.21
121 122 3.104512 TGTCTTCCCTACGGATTCATGT 58.895 45.455 0.00 0.00 38.24 3.21
122 123 3.133003 AGTGTCTTCCCTACGGATTCATG 59.867 47.826 0.00 0.00 38.24 3.07
123 124 3.375699 AGTGTCTTCCCTACGGATTCAT 58.624 45.455 0.00 0.00 38.24 2.57
124 125 2.816411 AGTGTCTTCCCTACGGATTCA 58.184 47.619 0.00 0.00 38.24 2.57
125 126 3.889520 AAGTGTCTTCCCTACGGATTC 57.110 47.619 0.00 0.00 38.24 2.52
126 127 3.450096 GGTAAGTGTCTTCCCTACGGATT 59.550 47.826 0.00 0.00 38.24 3.01
127 128 3.029570 GGTAAGTGTCTTCCCTACGGAT 58.970 50.000 0.00 0.00 38.24 4.18
128 129 2.225091 TGGTAAGTGTCTTCCCTACGGA 60.225 50.000 0.00 0.00 35.88 4.69
129 130 2.165845 CTGGTAAGTGTCTTCCCTACGG 59.834 54.545 0.00 0.00 0.00 4.02
130 131 3.087031 TCTGGTAAGTGTCTTCCCTACG 58.913 50.000 0.00 0.00 0.00 3.51
131 132 4.099727 GGATCTGGTAAGTGTCTTCCCTAC 59.900 50.000 0.00 0.00 0.00 3.18
132 133 4.287552 GGATCTGGTAAGTGTCTTCCCTA 58.712 47.826 0.00 0.00 0.00 3.53
133 134 3.108376 GGATCTGGTAAGTGTCTTCCCT 58.892 50.000 0.00 0.00 0.00 4.20
134 135 2.159085 CGGATCTGGTAAGTGTCTTCCC 60.159 54.545 0.00 0.00 0.00 3.97
135 136 2.159085 CCGGATCTGGTAAGTGTCTTCC 60.159 54.545 12.93 0.00 0.00 3.46
136 137 2.758979 TCCGGATCTGGTAAGTGTCTTC 59.241 50.000 20.32 0.00 0.00 2.87
137 138 2.816411 TCCGGATCTGGTAAGTGTCTT 58.184 47.619 20.32 0.00 0.00 3.01
138 139 2.526888 TCCGGATCTGGTAAGTGTCT 57.473 50.000 20.32 0.00 0.00 3.41
139 140 2.431057 ACATCCGGATCTGGTAAGTGTC 59.569 50.000 15.88 0.00 0.00 3.67
140 141 2.431057 GACATCCGGATCTGGTAAGTGT 59.569 50.000 15.88 18.55 0.00 3.55
141 142 2.430694 TGACATCCGGATCTGGTAAGTG 59.569 50.000 15.88 15.88 0.00 3.16
142 143 2.747177 TGACATCCGGATCTGGTAAGT 58.253 47.619 15.88 16.04 0.00 2.24
143 144 3.819564 TTGACATCCGGATCTGGTAAG 57.180 47.619 15.88 13.13 0.00 2.34
144 145 3.181455 CCATTGACATCCGGATCTGGTAA 60.181 47.826 15.88 6.36 0.00 2.85
145 146 2.368548 CCATTGACATCCGGATCTGGTA 59.631 50.000 15.88 7.75 0.00 3.25
146 147 1.141657 CCATTGACATCCGGATCTGGT 59.858 52.381 15.88 10.11 0.00 4.00
147 148 1.544093 CCCATTGACATCCGGATCTGG 60.544 57.143 15.88 15.09 0.00 3.86
148 149 1.544093 CCCCATTGACATCCGGATCTG 60.544 57.143 15.88 9.02 0.00 2.90
149 150 0.767375 CCCCATTGACATCCGGATCT 59.233 55.000 15.88 1.71 0.00 2.75
150 151 0.764890 TCCCCATTGACATCCGGATC 59.235 55.000 15.88 5.96 0.00 3.36
151 152 0.474184 GTCCCCATTGACATCCGGAT 59.526 55.000 12.38 12.38 35.29 4.18
152 153 1.632018 GGTCCCCATTGACATCCGGA 61.632 60.000 6.61 6.61 36.97 5.14
153 154 1.152963 GGTCCCCATTGACATCCGG 60.153 63.158 0.00 0.00 36.97 5.14
154 155 0.748005 GTGGTCCCCATTGACATCCG 60.748 60.000 0.00 0.00 35.28 4.18
155 156 0.331278 TGTGGTCCCCATTGACATCC 59.669 55.000 0.00 0.00 35.28 3.51
156 157 1.463674 GTGTGGTCCCCATTGACATC 58.536 55.000 0.00 0.00 35.28 3.06
157 158 0.039618 GGTGTGGTCCCCATTGACAT 59.960 55.000 0.00 0.00 35.28 3.06
158 159 1.356494 TGGTGTGGTCCCCATTGACA 61.356 55.000 0.00 0.00 35.28 3.58
159 160 0.893727 GTGGTGTGGTCCCCATTGAC 60.894 60.000 0.00 0.00 35.28 3.18
160 161 1.458486 GTGGTGTGGTCCCCATTGA 59.542 57.895 0.00 0.00 35.28 2.57
161 162 1.606313 GGTGGTGTGGTCCCCATTG 60.606 63.158 0.00 0.00 35.28 2.82
162 163 1.442886 ATGGTGGTGTGGTCCCCATT 61.443 55.000 0.00 0.00 36.11 3.16
163 164 0.551377 TATGGTGGTGTGGTCCCCAT 60.551 55.000 0.00 0.00 39.76 4.00
164 165 1.151788 TATGGTGGTGTGGTCCCCA 60.152 57.895 0.00 0.00 34.25 4.96
165 166 1.205460 ACTATGGTGGTGTGGTCCCC 61.205 60.000 0.00 0.00 0.00 4.81
166 167 0.252197 GACTATGGTGGTGTGGTCCC 59.748 60.000 0.00 0.00 0.00 4.46
167 168 0.981183 TGACTATGGTGGTGTGGTCC 59.019 55.000 0.00 0.00 0.00 4.46
168 169 1.623811 AGTGACTATGGTGGTGTGGTC 59.376 52.381 0.00 0.00 0.00 4.02
169 170 1.347707 CAGTGACTATGGTGGTGTGGT 59.652 52.381 0.00 0.00 0.00 4.16
170 171 1.945819 GCAGTGACTATGGTGGTGTGG 60.946 57.143 0.00 0.00 0.00 4.17
171 172 1.442769 GCAGTGACTATGGTGGTGTG 58.557 55.000 0.00 0.00 0.00 3.82
172 173 0.324943 GGCAGTGACTATGGTGGTGT 59.675 55.000 0.00 0.00 0.00 4.16
173 174 0.740868 CGGCAGTGACTATGGTGGTG 60.741 60.000 0.00 0.00 0.00 4.17
174 175 1.596934 CGGCAGTGACTATGGTGGT 59.403 57.895 0.00 0.00 0.00 4.16
175 176 1.815421 GCGGCAGTGACTATGGTGG 60.815 63.158 0.00 0.00 0.00 4.61
176 177 1.086067 CAGCGGCAGTGACTATGGTG 61.086 60.000 1.45 0.00 0.00 4.17
177 178 1.219124 CAGCGGCAGTGACTATGGT 59.781 57.895 1.45 0.00 0.00 3.55
178 179 0.391661 AACAGCGGCAGTGACTATGG 60.392 55.000 1.45 0.00 0.00 2.74
179 180 2.159240 TCTAACAGCGGCAGTGACTATG 60.159 50.000 1.45 0.00 0.00 2.23
180 181 2.100197 TCTAACAGCGGCAGTGACTAT 58.900 47.619 1.45 0.00 0.00 2.12
181 182 1.541379 TCTAACAGCGGCAGTGACTA 58.459 50.000 1.45 0.00 0.00 2.59
182 183 0.679505 TTCTAACAGCGGCAGTGACT 59.320 50.000 1.45 0.00 0.00 3.41
183 184 1.071605 CTTCTAACAGCGGCAGTGAC 58.928 55.000 1.45 0.00 0.00 3.67
184 185 0.966179 TCTTCTAACAGCGGCAGTGA 59.034 50.000 1.45 0.00 0.00 3.41
185 186 1.461127 GTTCTTCTAACAGCGGCAGTG 59.539 52.381 1.45 0.00 0.00 3.66
186 187 1.070134 TGTTCTTCTAACAGCGGCAGT 59.930 47.619 1.45 0.00 0.00 4.40
187 188 1.795768 TGTTCTTCTAACAGCGGCAG 58.204 50.000 1.45 0.00 0.00 4.85
188 189 1.871039 GTTGTTCTTCTAACAGCGGCA 59.129 47.619 1.45 0.00 0.00 5.69
189 190 1.197036 GGTTGTTCTTCTAACAGCGGC 59.803 52.381 0.00 0.00 33.05 6.53
190 191 2.223377 GTGGTTGTTCTTCTAACAGCGG 59.777 50.000 0.00 0.00 33.05 5.52
191 192 2.223377 GGTGGTTGTTCTTCTAACAGCG 59.777 50.000 0.00 0.00 33.05 5.18
192 193 2.552743 GGGTGGTTGTTCTTCTAACAGC 59.447 50.000 0.00 0.00 36.55 4.40
193 194 3.146847 GGGGTGGTTGTTCTTCTAACAG 58.853 50.000 0.00 0.00 0.00 3.16
194 195 2.158579 GGGGGTGGTTGTTCTTCTAACA 60.159 50.000 0.00 0.00 0.00 2.41
195 196 2.158579 TGGGGGTGGTTGTTCTTCTAAC 60.159 50.000 0.00 0.00 0.00 2.34
196 197 2.107552 CTGGGGGTGGTTGTTCTTCTAA 59.892 50.000 0.00 0.00 0.00 2.10
197 198 1.702957 CTGGGGGTGGTTGTTCTTCTA 59.297 52.381 0.00 0.00 0.00 2.10
198 199 0.478507 CTGGGGGTGGTTGTTCTTCT 59.521 55.000 0.00 0.00 0.00 2.85
199 200 0.185175 ACTGGGGGTGGTTGTTCTTC 59.815 55.000 0.00 0.00 0.00 2.87
200 201 0.106217 CACTGGGGGTGGTTGTTCTT 60.106 55.000 0.00 0.00 41.90 2.52
201 202 1.536676 CACTGGGGGTGGTTGTTCT 59.463 57.895 0.00 0.00 41.90 3.01
202 203 2.200337 GCACTGGGGGTGGTTGTTC 61.200 63.158 0.00 0.00 45.44 3.18
203 204 2.123468 GCACTGGGGGTGGTTGTT 60.123 61.111 0.00 0.00 45.44 2.83
204 205 3.425014 TGCACTGGGGGTGGTTGT 61.425 61.111 0.00 0.00 45.44 3.32
205 206 2.598394 CTGCACTGGGGGTGGTTG 60.598 66.667 0.00 0.00 45.44 3.77
206 207 1.943730 TTTCTGCACTGGGGGTGGTT 61.944 55.000 0.00 0.00 45.44 3.67
207 208 1.729267 ATTTCTGCACTGGGGGTGGT 61.729 55.000 0.00 0.00 45.44 4.16
208 209 0.967380 GATTTCTGCACTGGGGGTGG 60.967 60.000 0.00 0.00 45.44 4.61
210 211 1.142688 AGGATTTCTGCACTGGGGGT 61.143 55.000 0.00 0.00 0.00 4.95
211 212 0.918983 TAGGATTTCTGCACTGGGGG 59.081 55.000 0.00 0.00 0.00 5.40
212 213 1.839994 TCTAGGATTTCTGCACTGGGG 59.160 52.381 0.00 0.00 0.00 4.96
213 214 2.503356 AGTCTAGGATTTCTGCACTGGG 59.497 50.000 0.00 0.00 0.00 4.45
214 215 3.902881 AGTCTAGGATTTCTGCACTGG 57.097 47.619 0.00 0.00 0.00 4.00
215 216 3.937706 CCAAGTCTAGGATTTCTGCACTG 59.062 47.826 0.00 0.00 0.00 3.66
216 217 3.620966 GCCAAGTCTAGGATTTCTGCACT 60.621 47.826 0.00 0.00 0.00 4.40
217 218 2.680339 GCCAAGTCTAGGATTTCTGCAC 59.320 50.000 0.00 0.00 0.00 4.57
218 219 2.305635 TGCCAAGTCTAGGATTTCTGCA 59.694 45.455 0.00 0.00 0.00 4.41
219 220 2.991250 TGCCAAGTCTAGGATTTCTGC 58.009 47.619 0.00 0.00 0.00 4.26
220 221 4.201990 GCAATGCCAAGTCTAGGATTTCTG 60.202 45.833 0.00 0.00 0.00 3.02
221 222 3.950395 GCAATGCCAAGTCTAGGATTTCT 59.050 43.478 0.00 0.00 0.00 2.52
222 223 4.298744 GCAATGCCAAGTCTAGGATTTC 57.701 45.455 0.00 0.00 0.00 2.17
235 236 4.994317 CGAAGATCGGTAGGCAATGCCA 62.994 54.545 27.56 9.71 43.37 4.92
236 237 2.466654 CGAAGATCGGTAGGCAATGCC 61.467 57.143 18.04 18.04 42.11 4.40
237 238 0.861837 CGAAGATCGGTAGGCAATGC 59.138 55.000 0.00 0.00 36.00 3.56
238 239 1.860950 CACGAAGATCGGTAGGCAATG 59.139 52.381 4.66 0.00 45.59 2.82
239 240 1.806623 GCACGAAGATCGGTAGGCAAT 60.807 52.381 4.66 0.00 45.59 3.56
240 241 0.459585 GCACGAAGATCGGTAGGCAA 60.460 55.000 4.66 0.00 45.59 4.52
241 242 1.141019 GCACGAAGATCGGTAGGCA 59.859 57.895 4.66 0.00 45.59 4.75
242 243 0.459585 TTGCACGAAGATCGGTAGGC 60.460 55.000 4.66 3.44 45.59 3.93
243 244 2.128035 GATTGCACGAAGATCGGTAGG 58.872 52.381 4.66 0.00 45.59 3.18
244 245 1.781429 CGATTGCACGAAGATCGGTAG 59.219 52.381 9.38 0.00 45.59 3.18
245 246 1.835121 CGATTGCACGAAGATCGGTA 58.165 50.000 9.38 0.00 45.59 4.02
246 247 1.421410 GCGATTGCACGAAGATCGGT 61.421 55.000 16.94 0.00 45.59 4.69
247 248 1.273887 GCGATTGCACGAAGATCGG 59.726 57.895 16.94 2.52 45.59 4.18
248 249 1.273887 GGCGATTGCACGAAGATCG 59.726 57.895 12.29 12.29 45.35 3.69
249 250 1.643832 GGGCGATTGCACGAAGATC 59.356 57.895 7.38 0.00 45.35 2.75
250 251 3.813596 GGGCGATTGCACGAAGAT 58.186 55.556 7.38 0.00 45.35 2.40
257 258 2.125147 CGGAAGAGGGCGATTGCA 60.125 61.111 7.38 0.00 45.35 4.08
258 259 2.186903 TCGGAAGAGGGCGATTGC 59.813 61.111 0.00 0.00 36.42 3.56
268 269 2.029918 CACACACATGAGTCTCGGAAGA 60.030 50.000 0.00 0.00 39.12 2.87
269 270 2.332104 CACACACATGAGTCTCGGAAG 58.668 52.381 0.00 0.00 0.00 3.46
270 271 1.000843 CCACACACATGAGTCTCGGAA 59.999 52.381 0.00 0.00 0.00 4.30
271 272 0.603065 CCACACACATGAGTCTCGGA 59.397 55.000 0.00 0.00 0.00 4.55
272 273 0.318441 ACCACACACATGAGTCTCGG 59.682 55.000 0.00 0.00 0.00 4.63
273 274 1.422388 CACCACACACATGAGTCTCG 58.578 55.000 0.00 0.00 0.00 4.04
274 275 1.344438 TCCACCACACACATGAGTCTC 59.656 52.381 0.00 0.00 0.00 3.36
275 276 1.070758 GTCCACCACACACATGAGTCT 59.929 52.381 0.00 0.00 0.00 3.24
276 277 1.512926 GTCCACCACACACATGAGTC 58.487 55.000 0.00 0.00 0.00 3.36
277 278 0.108585 GGTCCACCACACACATGAGT 59.891 55.000 0.00 0.00 35.64 3.41
278 279 0.606401 GGGTCCACCACACACATGAG 60.606 60.000 0.00 0.00 39.85 2.90
279 280 1.059584 AGGGTCCACCACACACATGA 61.060 55.000 0.00 0.00 43.89 3.07
280 281 0.606401 GAGGGTCCACCACACACATG 60.606 60.000 0.00 0.00 43.89 3.21
281 282 0.768221 AGAGGGTCCACCACACACAT 60.768 55.000 0.00 0.00 43.89 3.21
282 283 1.383943 AGAGGGTCCACCACACACA 60.384 57.895 0.00 0.00 43.89 3.72
283 284 1.071471 CAGAGGGTCCACCACACAC 59.929 63.158 0.00 0.00 43.89 3.82
284 285 0.105401 TACAGAGGGTCCACCACACA 60.105 55.000 0.00 0.00 43.89 3.72
285 286 1.207329 GATACAGAGGGTCCACCACAC 59.793 57.143 0.00 0.00 43.89 3.82
286 287 1.078823 AGATACAGAGGGTCCACCACA 59.921 52.381 0.00 0.00 43.89 4.17
287 288 1.867363 AGATACAGAGGGTCCACCAC 58.133 55.000 0.00 0.00 43.89 4.16
288 289 3.438078 GGATAGATACAGAGGGTCCACCA 60.438 52.174 0.00 0.00 43.89 4.17
289 290 3.166679 GGATAGATACAGAGGGTCCACC 58.833 54.545 0.00 0.00 40.67 4.61
290 291 3.166679 GGGATAGATACAGAGGGTCCAC 58.833 54.545 0.00 0.00 0.00 4.02
291 292 2.225041 CGGGATAGATACAGAGGGTCCA 60.225 54.545 0.00 0.00 0.00 4.02
292 293 2.448453 CGGGATAGATACAGAGGGTCC 58.552 57.143 0.00 0.00 0.00 4.46
293 294 2.041350 TCCGGGATAGATACAGAGGGTC 59.959 54.545 0.00 0.00 0.00 4.46
294 295 2.071372 TCCGGGATAGATACAGAGGGT 58.929 52.381 0.00 0.00 0.00 4.34
295 296 2.901338 TCCGGGATAGATACAGAGGG 57.099 55.000 0.00 0.00 0.00 4.30
296 297 2.428890 GCATCCGGGATAGATACAGAGG 59.571 54.545 9.68 0.00 0.00 3.69
297 298 3.360867 AGCATCCGGGATAGATACAGAG 58.639 50.000 9.68 0.00 0.00 3.35
298 299 3.458044 AGCATCCGGGATAGATACAGA 57.542 47.619 9.68 0.00 0.00 3.41
299 300 3.259374 ACAAGCATCCGGGATAGATACAG 59.741 47.826 9.68 0.00 0.00 2.74
300 301 3.239449 ACAAGCATCCGGGATAGATACA 58.761 45.455 9.68 0.00 0.00 2.29
301 302 3.963428 ACAAGCATCCGGGATAGATAC 57.037 47.619 9.68 0.00 0.00 2.24
302 303 5.330233 TCTTACAAGCATCCGGGATAGATA 58.670 41.667 9.68 0.00 0.00 1.98
303 304 4.160329 TCTTACAAGCATCCGGGATAGAT 58.840 43.478 9.68 0.26 0.00 1.98
304 305 3.572642 TCTTACAAGCATCCGGGATAGA 58.427 45.455 9.68 4.28 0.00 1.98
305 306 4.221703 AGATCTTACAAGCATCCGGGATAG 59.778 45.833 9.68 5.71 0.00 2.08
306 307 4.160329 AGATCTTACAAGCATCCGGGATA 58.840 43.478 9.68 0.00 0.00 2.59
307 308 2.975489 AGATCTTACAAGCATCCGGGAT 59.025 45.455 2.97 2.97 0.00 3.85
308 309 2.398588 AGATCTTACAAGCATCCGGGA 58.601 47.619 0.00 0.00 0.00 5.14
309 310 2.874701 CAAGATCTTACAAGCATCCGGG 59.125 50.000 7.86 0.00 0.00 5.73
310 311 3.797039 TCAAGATCTTACAAGCATCCGG 58.203 45.455 7.86 0.00 0.00 5.14
311 312 5.998454 ATTCAAGATCTTACAAGCATCCG 57.002 39.130 7.86 0.00 0.00 4.18
312 313 8.388484 ACATATTCAAGATCTTACAAGCATCC 57.612 34.615 7.86 0.00 0.00 3.51
314 315 9.836864 TGTACATATTCAAGATCTTACAAGCAT 57.163 29.630 7.86 0.00 0.00 3.79
315 316 9.665719 TTGTACATATTCAAGATCTTACAAGCA 57.334 29.630 7.86 0.00 0.00 3.91
337 338 8.786898 GGAGATGCATATTAAGCTCAAATTGTA 58.213 33.333 0.00 0.00 0.00 2.41
348 349 8.031864 AGTTAGATGACGGAGATGCATATTAAG 58.968 37.037 0.00 0.00 0.00 1.85
356 357 3.557595 CCAAAGTTAGATGACGGAGATGC 59.442 47.826 0.00 0.00 0.00 3.91
357 358 4.806247 GTCCAAAGTTAGATGACGGAGATG 59.194 45.833 0.00 0.00 0.00 2.90
362 363 1.659098 GCGTCCAAAGTTAGATGACGG 59.341 52.381 11.63 0.00 46.42 4.79
367 368 2.093447 CCTGAGGCGTCCAAAGTTAGAT 60.093 50.000 3.56 0.00 0.00 1.98
421 434 2.431942 GACGACGCCATGTCCGTT 60.432 61.111 9.58 0.00 45.23 4.44
423 436 4.771356 ACGACGACGCCATGTCCG 62.771 66.667 7.30 1.94 45.23 4.79
438 451 5.576337 AGCAATATTTATGTACGAGCACG 57.424 39.130 0.76 0.76 45.75 5.34
460 475 3.711704 GGATGATCCTAGACACTTGGGAA 59.288 47.826 3.71 0.00 32.53 3.97
462 477 3.041211 TGGATGATCCTAGACACTTGGG 58.959 50.000 13.44 0.00 37.46 4.12
474 489 8.477419 TTTCTAATAAAACCCATGGATGATCC 57.523 34.615 15.22 4.05 36.96 3.36
515 530 1.978617 CAATGGAAGCGGCCCTTGT 60.979 57.895 10.77 0.00 32.78 3.16
543 558 1.656652 ATGAGCATCCAGTTACGCAC 58.343 50.000 0.00 0.00 0.00 5.34
546 561 6.851222 AAAGAATATGAGCATCCAGTTACG 57.149 37.500 0.00 0.00 0.00 3.18
572 587 8.628882 AAATTTTCTCGAAAACCAACTAACTG 57.371 30.769 6.95 0.00 42.32 3.16
573 588 7.919091 GGAAATTTTCTCGAAAACCAACTAACT 59.081 33.333 8.93 0.00 42.32 2.24
574 589 7.703197 TGGAAATTTTCTCGAAAACCAACTAAC 59.297 33.333 8.93 0.00 42.32 2.34
575 590 7.773149 TGGAAATTTTCTCGAAAACCAACTAA 58.227 30.769 8.93 0.00 42.32 2.24
613 628 5.357878 TGGAAGTAGGAATTGCAGCTTTATG 59.642 40.000 0.00 0.00 0.00 1.90
614 629 5.509498 TGGAAGTAGGAATTGCAGCTTTAT 58.491 37.500 0.00 0.00 0.00 1.40
721 767 1.001974 GAAAACTTGGGGAACATGGCC 59.998 52.381 0.00 0.00 0.00 5.36
733 779 4.453819 CAGCCTCTCACTTAGGAAAACTTG 59.546 45.833 0.00 0.00 36.08 3.16
735 781 3.008485 CCAGCCTCTCACTTAGGAAAACT 59.992 47.826 0.00 0.00 36.08 2.66
741 787 1.524482 GCCCAGCCTCTCACTTAGG 59.476 63.158 0.00 0.00 37.17 2.69
742 788 1.524482 GGCCCAGCCTCTCACTTAG 59.476 63.158 0.00 0.00 46.69 2.18
753 799 2.935740 GCCACTTTTCAGGCCCAGC 61.936 63.158 0.00 0.00 45.18 4.85
754 800 3.369921 GCCACTTTTCAGGCCCAG 58.630 61.111 0.00 0.00 45.18 4.45
807 853 2.690786 TGGCCAGTATGTTTCGTGTAC 58.309 47.619 0.00 0.00 0.00 2.90
826 872 3.005540 GCCGTCCAAATGGGCCTTG 62.006 63.158 4.53 1.11 41.01 3.61
861 907 4.767255 CGCAGTGTGGAGGGAGCC 62.767 72.222 0.00 0.00 0.00 4.70
862 908 4.008933 ACGCAGTGTGGAGGGAGC 62.009 66.667 8.84 0.00 42.51 4.70
875 953 2.281208 CCGGAAACCCTTGACGCA 60.281 61.111 0.00 0.00 0.00 5.24
926 1004 1.479021 GGTACGGGAGATCTAGGCTGT 60.479 57.143 0.00 0.00 0.00 4.40
957 1035 0.545309 TGGAGGAGGGAGAGTGGTTG 60.545 60.000 0.00 0.00 0.00 3.77
986 1064 2.824041 CCATTTCCCTGCCGGACG 60.824 66.667 5.05 0.00 41.83 4.79
988 1066 4.440829 GGCCATTTCCCTGCCGGA 62.441 66.667 5.05 0.00 39.68 5.14
1021 1099 1.682344 GGTGCTGGGGGAAATCCAC 60.682 63.158 1.22 0.00 40.15 4.02
1027 1105 2.935481 CAGGAGGTGCTGGGGGAA 60.935 66.667 0.00 0.00 0.00 3.97
1135 1216 2.815647 GAAGCGGCGGAGGAAGTG 60.816 66.667 9.78 0.00 0.00 3.16
1515 1761 2.126071 ACTCGGAATGTGGTCGCG 60.126 61.111 0.00 0.00 0.00 5.87
1521 1767 1.208052 ACCCAGATCACTCGGAATGTG 59.792 52.381 0.00 0.00 36.82 3.21
1635 1881 2.034812 CCTGAGAAGCGTATACCCAGTC 59.965 54.545 0.00 0.00 0.00 3.51
1638 1884 0.750850 GCCTGAGAAGCGTATACCCA 59.249 55.000 0.00 0.00 0.00 4.51
1671 1917 1.625818 AGTTCCCAGTAGAAGCAGTGG 59.374 52.381 0.00 0.00 38.55 4.00
1672 1918 2.300152 TGAGTTCCCAGTAGAAGCAGTG 59.700 50.000 0.00 0.00 0.00 3.66
1698 1944 4.455533 TCGAGCATGAGCAACTTGTTAATT 59.544 37.500 0.00 0.00 45.49 1.40
1761 2010 5.072741 GCTATATTCAAAGCCCATTCTCCA 58.927 41.667 0.00 0.00 32.40 3.86
2013 2271 4.019321 AGAGGTGGCAAAATGCTAGTAGAA 60.019 41.667 0.00 0.00 44.28 2.10
2049 2307 8.260270 TGATATCTATTGAAATGCATTCCTCG 57.740 34.615 13.38 0.08 37.22 4.63
2107 2365 2.029110 CGTACCTACCAAACCCGAAAGA 60.029 50.000 0.00 0.00 0.00 2.52
2419 2702 7.148457 CGGAGGGAGTAACAGTTTTATTTCTTC 60.148 40.741 0.00 0.00 0.00 2.87
2458 2742 2.826428 ACATTGTATAGAGGCTGCGTG 58.174 47.619 0.00 0.00 0.00 5.34
2519 2821 3.565764 TGATTTCATGAGGCCTACAGG 57.434 47.619 4.42 7.95 38.53 4.00
2544 2846 7.637519 CGAAAGTAATTGTTGTGATCTAGCATG 59.362 37.037 0.00 0.00 0.00 4.06
2577 2879 0.321996 ACCTCGAGTCCCTGAAAAGC 59.678 55.000 12.31 0.00 0.00 3.51
2619 2921 7.045126 TGAAATACACAAAAGGTAAACTGGG 57.955 36.000 0.00 0.00 0.00 4.45
2675 2977 4.500603 AAAAAGCAGACAAGATGAGCTG 57.499 40.909 0.00 0.00 35.42 4.24
2714 3018 7.037945 ACCAAGAGTAAGCTTTTCTATCTCCTT 60.038 37.037 3.20 1.02 0.00 3.36
2773 3077 8.262715 TGCTATGTCAGATTTATTTCGAAACA 57.737 30.769 13.81 0.00 0.00 2.83
2806 3110 2.095008 TCAAACAGTTTGTGCGCTTGAA 60.095 40.909 22.70 0.63 41.36 2.69
2810 3114 2.859538 CAAATCAAACAGTTTGTGCGCT 59.140 40.909 22.70 4.91 41.36 5.92
2813 3117 6.642917 CAGATTCAAATCAAACAGTTTGTGC 58.357 36.000 22.70 5.00 41.36 4.57
2925 3236 0.607217 TGGCATGCCTGTGAGACTTG 60.607 55.000 35.53 0.00 36.94 3.16
2926 3237 0.111061 TTGGCATGCCTGTGAGACTT 59.889 50.000 35.53 0.00 36.94 3.01
2933 3244 3.298619 TGCTTATATTTGGCATGCCTGT 58.701 40.909 35.53 23.00 36.94 4.00
2935 3246 4.154176 TGATGCTTATATTTGGCATGCCT 58.846 39.130 35.53 19.66 45.14 4.75
2959 3270 2.615493 GCCCTCTAGCTTGCTACACAAA 60.615 50.000 0.00 0.00 37.96 2.83
2960 3271 1.066143 GCCCTCTAGCTTGCTACACAA 60.066 52.381 0.00 0.00 36.62 3.33
2962 3273 0.537188 TGCCCTCTAGCTTGCTACAC 59.463 55.000 0.00 0.00 0.00 2.90
2964 3275 0.537188 TGTGCCCTCTAGCTTGCTAC 59.463 55.000 0.00 0.00 0.00 3.58
2965 3276 0.537188 GTGTGCCCTCTAGCTTGCTA 59.463 55.000 0.00 2.19 0.00 3.49
2966 3277 1.298014 GTGTGCCCTCTAGCTTGCT 59.702 57.895 0.00 0.00 0.00 3.91
2967 3278 1.746991 GGTGTGCCCTCTAGCTTGC 60.747 63.158 0.00 0.00 0.00 4.01
2968 3279 0.674895 GTGGTGTGCCCTCTAGCTTG 60.675 60.000 0.00 0.00 0.00 4.01
2969 3280 1.127567 TGTGGTGTGCCCTCTAGCTT 61.128 55.000 0.00 0.00 0.00 3.74
2970 3281 1.536418 TGTGGTGTGCCCTCTAGCT 60.536 57.895 0.00 0.00 0.00 3.32
2971 3282 1.078848 CTGTGGTGTGCCCTCTAGC 60.079 63.158 0.00 0.00 0.00 3.42
2972 3283 0.247736 GTCTGTGGTGTGCCCTCTAG 59.752 60.000 0.00 0.00 0.00 2.43
2973 3284 0.471022 TGTCTGTGGTGTGCCCTCTA 60.471 55.000 0.00 0.00 0.00 2.43
2974 3285 1.766059 TGTCTGTGGTGTGCCCTCT 60.766 57.895 0.00 0.00 0.00 3.69
2975 3286 1.598130 GTGTCTGTGGTGTGCCCTC 60.598 63.158 0.00 0.00 0.00 4.30
2976 3287 2.374525 TGTGTCTGTGGTGTGCCCT 61.375 57.895 0.00 0.00 0.00 5.19
2986 3297 2.665649 TCGACAAACTGTGTGTCTGT 57.334 45.000 24.43 4.84 41.96 3.41
2987 3298 3.846023 GCAATCGACAAACTGTGTGTCTG 60.846 47.826 24.43 18.04 41.96 3.51
2997 3308 0.730494 GGCAGCTGCAATCGACAAAC 60.730 55.000 37.63 14.35 44.36 2.93
3066 3377 7.923414 AACAAACTTCTAACTTCAGTCACTT 57.077 32.000 0.00 0.00 0.00 3.16
3068 3379 8.541312 GTCTAACAAACTTCTAACTTCAGTCAC 58.459 37.037 0.00 0.00 0.00 3.67
3108 3419 1.174783 TCAGCCTTACACGACTCTCC 58.825 55.000 0.00 0.00 0.00 3.71
3132 3443 9.546428 TTCGATCATGCAAAAGAGATAGATTTA 57.454 29.630 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.