Multiple sequence alignment - TraesCS7D01G398400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G398400 chr7D 100.000 2858 0 0 1 2858 514759352 514756495 0.000000e+00 5278.0
1 TraesCS7D01G398400 chr7D 87.273 1210 106 16 698 1884 600218400 600219584 0.000000e+00 1338.0
2 TraesCS7D01G398400 chr7D 93.985 532 19 1 148 666 608122523 608121992 0.000000e+00 793.0
3 TraesCS7D01G398400 chr7D 90.056 533 40 3 909 1441 610488419 610488938 0.000000e+00 678.0
4 TraesCS7D01G398400 chr7D 78.291 1018 196 19 675 1689 608513957 608512962 1.440000e-177 632.0
5 TraesCS7D01G398400 chr7D 89.087 449 46 2 1439 1884 610519423 610519871 3.220000e-154 555.0
6 TraesCS7D01G398400 chr7D 75.475 632 124 21 675 1297 608727535 608728144 2.170000e-71 279.0
7 TraesCS7D01G398400 chr7D 81.847 314 39 9 2477 2776 600223091 600223400 6.110000e-62 248.0
8 TraesCS7D01G398400 chr7D 92.063 63 4 1 2560 2621 514756689 514756627 1.410000e-13 87.9
9 TraesCS7D01G398400 chr7D 92.063 63 4 1 2664 2726 514756793 514756732 1.410000e-13 87.9
10 TraesCS7D01G398400 chr7B 90.992 1210 103 2 675 1884 693657378 693656175 0.000000e+00 1626.0
11 TraesCS7D01G398400 chr7B 90.811 1208 105 2 677 1884 685241456 685240255 0.000000e+00 1611.0
12 TraesCS7D01G398400 chr7B 90.579 1210 108 2 675 1884 696191946 696190743 0.000000e+00 1598.0
13 TraesCS7D01G398400 chr7B 88.584 657 49 9 675 1305 694440201 694439545 0.000000e+00 774.0
14 TraesCS7D01G398400 chr7B 87.013 539 65 4 1350 1884 694439532 694438995 1.130000e-168 603.0
15 TraesCS7D01G398400 chr7B 75.883 651 125 20 675 1316 697615783 697615156 1.290000e-78 303.0
16 TraesCS7D01G398400 chr7B 73.702 886 168 43 677 1519 695908501 695909364 4.660000e-73 285.0
17 TraesCS7D01G398400 chr7B 82.647 340 42 8 2454 2779 699186005 699185669 4.660000e-73 285.0
18 TraesCS7D01G398400 chr7B 82.222 315 50 6 675 986 697422852 697423163 1.690000e-67 267.0
19 TraesCS7D01G398400 chr7B 79.240 342 41 13 2454 2779 698672474 698672147 8.020000e-51 211.0
20 TraesCS7D01G398400 chr7B 95.745 47 2 0 2673 2719 693654041 693653995 3.050000e-10 76.8
21 TraesCS7D01G398400 chr7B 93.617 47 3 0 2673 2719 685223568 685223522 1.420000e-08 71.3
22 TraesCS7D01G398400 chr7B 96.774 31 1 0 2753 2783 693654030 693654000 5.000000e-03 52.8
23 TraesCS7D01G398400 chr5D 94.340 530 17 2 150 666 58020294 58020823 0.000000e+00 800.0
24 TraesCS7D01G398400 chr3D 93.962 530 19 1 150 666 91802953 91803482 0.000000e+00 789.0
25 TraesCS7D01G398400 chr3D 93.585 530 20 3 150 666 466755427 466755955 0.000000e+00 778.0
26 TraesCS7D01G398400 chr3D 98.214 56 1 0 2011 2066 591973084 591973139 6.520000e-17 99.0
27 TraesCS7D01G398400 chr6D 93.785 531 19 3 149 666 450099666 450099137 0.000000e+00 785.0
28 TraesCS7D01G398400 chr6D 93.585 530 21 1 150 666 426993087 426993616 0.000000e+00 778.0
29 TraesCS7D01G398400 chr6D 100.000 56 0 0 2011 2066 131657467 131657522 1.400000e-18 104.0
30 TraesCS7D01G398400 chr2D 93.333 540 22 2 141 666 1503355 1502816 0.000000e+00 785.0
31 TraesCS7D01G398400 chr2D 93.609 532 21 1 148 666 612544566 612544035 0.000000e+00 782.0
32 TraesCS7D01G398400 chr2D 100.000 56 0 0 2011 2066 5275891 5275836 1.400000e-18 104.0
33 TraesCS7D01G398400 chr1D 93.585 530 19 3 150 666 364840152 364839625 0.000000e+00 776.0
34 TraesCS7D01G398400 chr7A 86.742 709 60 19 709 1395 700267290 700266594 0.000000e+00 758.0
35 TraesCS7D01G398400 chr7A 88.938 452 47 2 1436 1884 700258160 700257709 3.220000e-154 555.0
36 TraesCS7D01G398400 chr7A 78.593 668 122 14 1026 1689 699790538 699789888 3.400000e-114 422.0
37 TraesCS7D01G398400 chr7A 91.373 255 22 0 1436 1690 700266590 700266336 1.630000e-92 350.0
38 TraesCS7D01G398400 chr7A 75.039 649 136 20 675 1316 700160732 700160103 7.800000e-71 278.0
39 TraesCS7D01G398400 chr7A 82.090 335 43 8 2456 2776 700490588 700490919 1.300000e-68 270.0
40 TraesCS7D01G398400 chr7A 88.546 227 14 6 1169 1395 700258378 700258164 6.070000e-67 265.0
41 TraesCS7D01G398400 chr7A 80.769 338 46 10 2456 2779 700251459 700251127 2.200000e-61 246.0
42 TraesCS7D01G398400 chr7A 95.238 105 5 0 562 666 338089882 338089986 1.760000e-37 167.0
43 TraesCS7D01G398400 chr7A 98.214 56 1 0 2011 2066 107639217 107639162 6.520000e-17 99.0
44 TraesCS7D01G398400 chr7A 93.103 58 2 1 2011 2066 84785757 84785700 1.820000e-12 84.2
45 TraesCS7D01G398400 chrUn 83.824 340 38 8 2454 2779 77461384 77461048 9.950000e-80 307.0
46 TraesCS7D01G398400 chrUn 83.912 317 44 5 675 986 77772851 77773165 2.150000e-76 296.0
47 TraesCS7D01G398400 chrUn 72.381 525 115 17 718 1223 83396771 83396258 3.840000e-29 139.0
48 TraesCS7D01G398400 chr4A 95.238 105 5 0 562 666 7416049 7416153 1.760000e-37 167.0
49 TraesCS7D01G398400 chr3B 95.238 105 5 0 562 666 781483963 781483859 1.760000e-37 167.0
50 TraesCS7D01G398400 chr2A 96.970 99 3 0 568 666 103912813 103912715 1.760000e-37 167.0
51 TraesCS7D01G398400 chr5B 94.286 105 6 0 562 666 465251802 465251906 8.190000e-36 161.0
52 TraesCS7D01G398400 chr5A 95.960 99 4 0 568 666 606346559 606346461 8.190000e-36 161.0
53 TraesCS7D01G398400 chr1B 95.960 99 4 0 568 666 653798219 653798121 8.190000e-36 161.0
54 TraesCS7D01G398400 chr3A 93.103 58 2 1 2011 2066 202617126 202617183 1.820000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G398400 chr7D 514756495 514759352 2857 True 1817.933333 5278 94.708667 1 2858 3 chr7D.!!$R3 2857
1 TraesCS7D01G398400 chr7D 600218400 600223400 5000 False 793.000000 1338 84.560000 698 2776 2 chr7D.!!$F4 2078
2 TraesCS7D01G398400 chr7D 608121992 608122523 531 True 793.000000 793 93.985000 148 666 1 chr7D.!!$R1 518
3 TraesCS7D01G398400 chr7D 610488419 610488938 519 False 678.000000 678 90.056000 909 1441 1 chr7D.!!$F2 532
4 TraesCS7D01G398400 chr7D 608512962 608513957 995 True 632.000000 632 78.291000 675 1689 1 chr7D.!!$R2 1014
5 TraesCS7D01G398400 chr7D 608727535 608728144 609 False 279.000000 279 75.475000 675 1297 1 chr7D.!!$F1 622
6 TraesCS7D01G398400 chr7B 685240255 685241456 1201 True 1611.000000 1611 90.811000 677 1884 1 chr7B.!!$R2 1207
7 TraesCS7D01G398400 chr7B 696190743 696191946 1203 True 1598.000000 1598 90.579000 675 1884 1 chr7B.!!$R3 1209
8 TraesCS7D01G398400 chr7B 694438995 694440201 1206 True 688.500000 774 87.798500 675 1884 2 chr7B.!!$R8 1209
9 TraesCS7D01G398400 chr7B 693653995 693657378 3383 True 585.200000 1626 94.503667 675 2783 3 chr7B.!!$R7 2108
10 TraesCS7D01G398400 chr7B 697615156 697615783 627 True 303.000000 303 75.883000 675 1316 1 chr7B.!!$R4 641
11 TraesCS7D01G398400 chr7B 695908501 695909364 863 False 285.000000 285 73.702000 677 1519 1 chr7B.!!$F1 842
12 TraesCS7D01G398400 chr5D 58020294 58020823 529 False 800.000000 800 94.340000 150 666 1 chr5D.!!$F1 516
13 TraesCS7D01G398400 chr3D 91802953 91803482 529 False 789.000000 789 93.962000 150 666 1 chr3D.!!$F1 516
14 TraesCS7D01G398400 chr3D 466755427 466755955 528 False 778.000000 778 93.585000 150 666 1 chr3D.!!$F2 516
15 TraesCS7D01G398400 chr6D 450099137 450099666 529 True 785.000000 785 93.785000 149 666 1 chr6D.!!$R1 517
16 TraesCS7D01G398400 chr6D 426993087 426993616 529 False 778.000000 778 93.585000 150 666 1 chr6D.!!$F2 516
17 TraesCS7D01G398400 chr2D 1502816 1503355 539 True 785.000000 785 93.333000 141 666 1 chr2D.!!$R1 525
18 TraesCS7D01G398400 chr2D 612544035 612544566 531 True 782.000000 782 93.609000 148 666 1 chr2D.!!$R3 518
19 TraesCS7D01G398400 chr1D 364839625 364840152 527 True 776.000000 776 93.585000 150 666 1 chr1D.!!$R1 516
20 TraesCS7D01G398400 chr7A 700266336 700267290 954 True 554.000000 758 89.057500 709 1690 2 chr7A.!!$R7 981
21 TraesCS7D01G398400 chr7A 699789888 699790538 650 True 422.000000 422 78.593000 1026 1689 1 chr7A.!!$R3 663
22 TraesCS7D01G398400 chr7A 700257709 700258378 669 True 410.000000 555 88.742000 1169 1884 2 chr7A.!!$R6 715
23 TraesCS7D01G398400 chr7A 700160103 700160732 629 True 278.000000 278 75.039000 675 1316 1 chr7A.!!$R4 641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 97 0.107831 TTCCCTTTCCACAGTCCACG 59.892 55.0 0.0 0.0 0.00 4.94 F
123 124 0.168128 CGACCCGCAAGAAAATCCAC 59.832 55.0 0.0 0.0 43.02 4.02 F
1776 1860 0.036952 AGGTTGAGAGGATGTGTGCG 60.037 55.0 0.0 0.0 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1434 1512 0.038166 GTGGGAGGTCAGCAATGGAA 59.962 55.0 0.00 0.0 0.00 3.53 R
1819 1903 0.321653 AACAGCGATGGTGGGAAGTC 60.322 55.0 5.32 0.0 35.13 3.01 R
2781 6162 0.106769 TGGGCAGAAGCAGAACAACA 60.107 50.0 0.00 0.0 44.61 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.699073 AGCAGCACACAACACTCTG 58.301 52.632 0.00 0.00 0.00 3.35
19 20 1.009222 GCAGCACACAACACTCTGC 60.009 57.895 0.00 0.00 42.46 4.26
20 21 1.650912 CAGCACACAACACTCTGCC 59.349 57.895 0.00 0.00 0.00 4.85
21 22 0.816825 CAGCACACAACACTCTGCCT 60.817 55.000 0.00 0.00 0.00 4.75
22 23 0.533755 AGCACACAACACTCTGCCTC 60.534 55.000 0.00 0.00 0.00 4.70
23 24 0.815213 GCACACAACACTCTGCCTCA 60.815 55.000 0.00 0.00 0.00 3.86
24 25 1.667236 CACACAACACTCTGCCTCAA 58.333 50.000 0.00 0.00 0.00 3.02
25 26 2.016318 CACACAACACTCTGCCTCAAA 58.984 47.619 0.00 0.00 0.00 2.69
26 27 2.032550 CACACAACACTCTGCCTCAAAG 59.967 50.000 0.00 0.00 0.00 2.77
27 28 2.092968 ACACAACACTCTGCCTCAAAGA 60.093 45.455 0.00 0.00 0.00 2.52
28 29 2.945008 CACAACACTCTGCCTCAAAGAA 59.055 45.455 0.00 0.00 0.00 2.52
29 30 3.378112 CACAACACTCTGCCTCAAAGAAA 59.622 43.478 0.00 0.00 0.00 2.52
30 31 4.016444 ACAACACTCTGCCTCAAAGAAAA 58.984 39.130 0.00 0.00 0.00 2.29
31 32 4.462483 ACAACACTCTGCCTCAAAGAAAAA 59.538 37.500 0.00 0.00 0.00 1.94
49 50 2.475200 AAAAAGCGCACACAAGACTC 57.525 45.000 11.47 0.00 0.00 3.36
50 51 0.304705 AAAAGCGCACACAAGACTCG 59.695 50.000 11.47 0.00 0.00 4.18
51 52 2.105960 AAAGCGCACACAAGACTCGC 62.106 55.000 11.47 0.00 45.34 5.03
52 53 3.337889 GCGCACACAAGACTCGCA 61.338 61.111 0.30 0.00 44.50 5.10
53 54 2.671177 GCGCACACAAGACTCGCAT 61.671 57.895 0.30 0.00 44.50 4.73
54 55 1.417592 CGCACACAAGACTCGCATC 59.582 57.895 0.00 0.00 0.00 3.91
55 56 1.417592 GCACACAAGACTCGCATCG 59.582 57.895 0.00 0.00 0.00 3.84
56 57 1.008875 GCACACAAGACTCGCATCGA 61.009 55.000 0.00 0.00 0.00 3.59
65 66 4.730081 TCGCATCGAGGATTTCCG 57.270 55.556 0.00 0.00 42.08 4.30
66 67 1.067416 TCGCATCGAGGATTTCCGG 59.933 57.895 0.00 0.00 42.08 5.14
67 68 2.598632 CGCATCGAGGATTTCCGGC 61.599 63.158 0.00 0.00 42.08 6.13
68 69 2.598632 GCATCGAGGATTTCCGGCG 61.599 63.158 0.00 0.00 42.08 6.46
69 70 1.956170 CATCGAGGATTTCCGGCGG 60.956 63.158 22.51 22.51 42.08 6.13
70 71 3.809374 ATCGAGGATTTCCGGCGGC 62.809 63.158 23.83 6.93 42.08 6.53
87 88 4.715523 CCGGCGCTTCCCTTTCCA 62.716 66.667 7.64 0.00 0.00 3.53
88 89 3.431725 CGGCGCTTCCCTTTCCAC 61.432 66.667 7.64 0.00 0.00 4.02
89 90 2.282180 GGCGCTTCCCTTTCCACA 60.282 61.111 7.64 0.00 0.00 4.17
90 91 2.335712 GGCGCTTCCCTTTCCACAG 61.336 63.158 7.64 0.00 0.00 3.66
91 92 1.600916 GCGCTTCCCTTTCCACAGT 60.601 57.895 0.00 0.00 0.00 3.55
92 93 1.578206 GCGCTTCCCTTTCCACAGTC 61.578 60.000 0.00 0.00 0.00 3.51
93 94 0.955919 CGCTTCCCTTTCCACAGTCC 60.956 60.000 0.00 0.00 0.00 3.85
94 95 0.110486 GCTTCCCTTTCCACAGTCCA 59.890 55.000 0.00 0.00 0.00 4.02
95 96 1.897560 CTTCCCTTTCCACAGTCCAC 58.102 55.000 0.00 0.00 0.00 4.02
96 97 0.107831 TTCCCTTTCCACAGTCCACG 59.892 55.000 0.00 0.00 0.00 4.94
97 98 1.966451 CCCTTTCCACAGTCCACGC 60.966 63.158 0.00 0.00 0.00 5.34
98 99 1.966451 CCTTTCCACAGTCCACGCC 60.966 63.158 0.00 0.00 0.00 5.68
99 100 1.227823 CTTTCCACAGTCCACGCCA 60.228 57.895 0.00 0.00 0.00 5.69
100 101 0.817634 CTTTCCACAGTCCACGCCAA 60.818 55.000 0.00 0.00 0.00 4.52
101 102 0.179004 TTTCCACAGTCCACGCCAAT 60.179 50.000 0.00 0.00 0.00 3.16
102 103 0.888736 TTCCACAGTCCACGCCAATG 60.889 55.000 0.00 0.00 0.00 2.82
103 104 1.302431 CCACAGTCCACGCCAATGA 60.302 57.895 0.00 0.00 0.00 2.57
104 105 1.577328 CCACAGTCCACGCCAATGAC 61.577 60.000 0.00 0.00 0.00 3.06
105 106 1.667830 ACAGTCCACGCCAATGACG 60.668 57.895 0.00 0.00 34.24 4.35
106 107 1.374125 CAGTCCACGCCAATGACGA 60.374 57.895 0.00 0.00 34.24 4.20
107 108 1.374252 AGTCCACGCCAATGACGAC 60.374 57.895 0.00 0.00 34.24 4.34
108 109 2.047655 TCCACGCCAATGACGACC 60.048 61.111 0.00 0.00 0.00 4.79
109 110 3.124921 CCACGCCAATGACGACCC 61.125 66.667 0.00 0.00 0.00 4.46
110 111 3.487202 CACGCCAATGACGACCCG 61.487 66.667 0.00 0.00 0.00 5.28
113 114 3.053291 GCCAATGACGACCCGCAA 61.053 61.111 0.00 0.00 0.00 4.85
114 115 3.039202 GCCAATGACGACCCGCAAG 62.039 63.158 0.00 0.00 0.00 4.01
115 116 1.375396 CCAATGACGACCCGCAAGA 60.375 57.895 0.00 0.00 43.02 3.02
116 117 0.953471 CCAATGACGACCCGCAAGAA 60.953 55.000 0.00 0.00 43.02 2.52
117 118 0.871722 CAATGACGACCCGCAAGAAA 59.128 50.000 0.00 0.00 43.02 2.52
118 119 1.265635 CAATGACGACCCGCAAGAAAA 59.734 47.619 0.00 0.00 43.02 2.29
119 120 1.821216 ATGACGACCCGCAAGAAAAT 58.179 45.000 0.00 0.00 43.02 1.82
120 121 1.153353 TGACGACCCGCAAGAAAATC 58.847 50.000 0.00 0.00 43.02 2.17
121 122 0.446616 GACGACCCGCAAGAAAATCC 59.553 55.000 0.00 0.00 43.02 3.01
122 123 0.250553 ACGACCCGCAAGAAAATCCA 60.251 50.000 0.00 0.00 43.02 3.41
123 124 0.168128 CGACCCGCAAGAAAATCCAC 59.832 55.000 0.00 0.00 43.02 4.02
124 125 1.534729 GACCCGCAAGAAAATCCACT 58.465 50.000 0.00 0.00 43.02 4.00
125 126 1.468914 GACCCGCAAGAAAATCCACTC 59.531 52.381 0.00 0.00 43.02 3.51
126 127 1.202879 ACCCGCAAGAAAATCCACTCA 60.203 47.619 0.00 0.00 43.02 3.41
127 128 1.200020 CCCGCAAGAAAATCCACTCAC 59.800 52.381 0.00 0.00 43.02 3.51
128 129 1.200020 CCGCAAGAAAATCCACTCACC 59.800 52.381 0.00 0.00 43.02 4.02
129 130 2.154462 CGCAAGAAAATCCACTCACCT 58.846 47.619 0.00 0.00 43.02 4.00
130 131 2.160417 CGCAAGAAAATCCACTCACCTC 59.840 50.000 0.00 0.00 43.02 3.85
131 132 3.416156 GCAAGAAAATCCACTCACCTCT 58.584 45.455 0.00 0.00 0.00 3.69
132 133 3.190118 GCAAGAAAATCCACTCACCTCTG 59.810 47.826 0.00 0.00 0.00 3.35
133 134 3.064900 AGAAAATCCACTCACCTCTGC 57.935 47.619 0.00 0.00 0.00 4.26
134 135 2.087646 GAAAATCCACTCACCTCTGCC 58.912 52.381 0.00 0.00 0.00 4.85
135 136 1.366319 AAATCCACTCACCTCTGCCT 58.634 50.000 0.00 0.00 0.00 4.75
136 137 0.617413 AATCCACTCACCTCTGCCTG 59.383 55.000 0.00 0.00 0.00 4.85
137 138 0.252421 ATCCACTCACCTCTGCCTGA 60.252 55.000 0.00 0.00 0.00 3.86
138 139 0.902048 TCCACTCACCTCTGCCTGAG 60.902 60.000 0.00 0.00 42.30 3.35
139 140 0.902048 CCACTCACCTCTGCCTGAGA 60.902 60.000 0.00 0.00 45.39 3.27
140 141 1.193323 CACTCACCTCTGCCTGAGAT 58.807 55.000 0.00 0.00 45.39 2.75
141 142 1.136695 CACTCACCTCTGCCTGAGATC 59.863 57.143 0.00 0.00 45.39 2.75
142 143 0.752054 CTCACCTCTGCCTGAGATCC 59.248 60.000 0.00 0.00 45.39 3.36
143 144 0.689080 TCACCTCTGCCTGAGATCCC 60.689 60.000 0.00 0.00 45.39 3.85
144 145 1.383803 ACCTCTGCCTGAGATCCCC 60.384 63.158 0.00 0.00 45.39 4.81
145 146 2.506061 CCTCTGCCTGAGATCCCCG 61.506 68.421 0.00 0.00 45.39 5.73
146 147 2.444706 TCTGCCTGAGATCCCCGG 60.445 66.667 0.00 0.00 0.00 5.73
154 155 3.804638 GAGATCCCCGGCCGGACTA 62.805 68.421 45.44 28.71 37.50 2.59
209 210 4.662278 TGCAACTTTACCCTGCTAATCTT 58.338 39.130 0.00 0.00 37.00 2.40
246 247 1.338107 ACGGTCCAGATCACACAAGA 58.662 50.000 0.00 0.00 0.00 3.02
293 294 5.244626 AGTTTTCAGGATAGCAGCAAACATT 59.755 36.000 0.00 0.00 0.00 2.71
606 621 0.987294 CCCCTTGTGTGATCTGGACT 59.013 55.000 0.00 0.00 0.00 3.85
654 669 1.081442 GGGTAAAGTTGCAGCGTGC 60.081 57.895 0.00 3.44 45.29 5.34
662 677 2.545596 TTGCAGCGTGCCTTCACTG 61.546 57.895 7.38 0.00 44.23 3.66
666 681 1.078848 AGCGTGCCTTCACTGGATC 60.079 57.895 0.00 0.00 40.99 3.36
667 682 1.078848 GCGTGCCTTCACTGGATCT 60.079 57.895 0.00 0.00 40.99 2.75
668 683 1.086634 GCGTGCCTTCACTGGATCTC 61.087 60.000 0.00 0.00 40.99 2.75
669 684 0.247460 CGTGCCTTCACTGGATCTCA 59.753 55.000 0.00 0.00 40.99 3.27
703 718 1.351017 ACCTCTTGGCGGAGATTTTCA 59.649 47.619 8.54 0.00 35.52 2.69
713 728 1.673168 GAGATTTTCATCCGGCTGCT 58.327 50.000 0.00 0.00 0.00 4.24
766 782 4.494400 GCGTTACCTTTCGCCGCG 62.494 66.667 6.39 6.39 45.54 6.46
928 968 3.394719 GCTGACTTCTCCTTTTCGTTCT 58.605 45.455 0.00 0.00 0.00 3.01
1011 1051 3.655486 CAAGCAAAACATGATGGCTGAA 58.345 40.909 0.00 0.00 34.56 3.02
1229 1280 0.749649 AGAGTGATCTGGTCGGCATC 59.250 55.000 0.00 0.00 0.00 3.91
1287 1338 4.039092 ACTGGGCAATGGCGAGCT 62.039 61.111 17.93 3.76 42.47 4.09
1300 1351 2.021068 GCGAGCTACTGCATCCCAGA 62.021 60.000 0.00 0.00 44.64 3.86
1317 1368 1.905215 CAGACCTGGAGTGATCTGGTT 59.095 52.381 0.00 0.00 36.74 3.67
1398 1473 2.030457 GGTCTTGCCGATGAACAATACG 59.970 50.000 0.00 0.00 0.00 3.06
1434 1512 4.974645 TGACACCAGAACTATGGAGTTT 57.025 40.909 0.00 0.00 46.23 2.66
1459 1537 2.960688 GCTGACCTCCCACCTGGAC 61.961 68.421 0.00 0.00 38.61 4.02
1469 1547 0.960364 CCACCTGGACAATGGAACCG 60.960 60.000 0.00 0.00 35.33 4.44
1516 1597 2.363406 AAGGCAGGCTTGGGATGC 60.363 61.111 8.78 0.00 39.25 3.91
1541 1622 7.362574 GCTTAGTACAGGTTATGGAAATGCAAA 60.363 37.037 0.00 0.00 0.00 3.68
1630 1711 6.688073 TGGAGAAAATCTCACTAGGTTCTT 57.312 37.500 9.40 0.00 45.12 2.52
1647 1728 5.537674 AGGTTCTTGGTATCGGTATCGTATT 59.462 40.000 0.00 0.00 37.69 1.89
1649 1730 6.211515 GTTCTTGGTATCGGTATCGTATTGT 58.788 40.000 0.00 0.00 37.69 2.71
1710 1794 2.105766 ACCCCGAAGTACTTATCGCTT 58.894 47.619 8.42 0.00 37.73 4.68
1712 1796 3.317430 ACCCCGAAGTACTTATCGCTTAG 59.683 47.826 8.42 1.00 37.73 2.18
1747 1831 3.996363 GGAATTTTGCAAACTGGATGTCC 59.004 43.478 12.39 6.42 0.00 4.02
1776 1860 0.036952 AGGTTGAGAGGATGTGTGCG 60.037 55.000 0.00 0.00 0.00 5.34
1784 1868 1.936547 GAGGATGTGTGCGGAATCTTC 59.063 52.381 0.00 0.00 0.00 2.87
1808 1892 3.004002 GGGTTTTCCGGTTCTAAAGTGTG 59.996 47.826 0.00 0.00 41.82 3.82
1810 1894 1.886886 TTCCGGTTCTAAAGTGTGCC 58.113 50.000 0.00 0.00 0.00 5.01
1816 1900 4.750098 CCGGTTCTAAAGTGTGCCTATATG 59.250 45.833 0.00 0.00 0.00 1.78
1819 1903 3.990092 TCTAAAGTGTGCCTATATGCCG 58.010 45.455 0.00 0.00 0.00 5.69
1834 1918 2.511600 CCGACTTCCCACCATCGC 60.512 66.667 0.00 0.00 33.25 4.58
1844 1928 0.798776 CCACCATCGCTGTTGTCTTC 59.201 55.000 0.00 0.00 0.00 2.87
1926 2068 9.278978 TGTTCTTGTTTGCATGATTTAGTAGTA 57.721 29.630 0.00 0.00 0.00 1.82
1949 2091 8.100791 AGTAGTTATTTATCTTGTGCTTGTGGA 58.899 33.333 0.00 0.00 0.00 4.02
1996 2139 6.810888 AATTGTGATTCGTTGTCTTGTTTG 57.189 33.333 0.00 0.00 0.00 2.93
2007 2150 6.255887 TCGTTGTCTTGTTTGTTTGTTTGTTT 59.744 30.769 0.00 0.00 0.00 2.83
2008 2151 6.353064 CGTTGTCTTGTTTGTTTGTTTGTTTG 59.647 34.615 0.00 0.00 0.00 2.93
2009 2152 6.910536 TGTCTTGTTTGTTTGTTTGTTTGT 57.089 29.167 0.00 0.00 0.00 2.83
2010 2153 7.308782 TGTCTTGTTTGTTTGTTTGTTTGTT 57.691 28.000 0.00 0.00 0.00 2.83
2011 2154 7.752695 TGTCTTGTTTGTTTGTTTGTTTGTTT 58.247 26.923 0.00 0.00 0.00 2.83
2012 2155 7.693951 TGTCTTGTTTGTTTGTTTGTTTGTTTG 59.306 29.630 0.00 0.00 0.00 2.93
2013 2156 7.694367 GTCTTGTTTGTTTGTTTGTTTGTTTGT 59.306 29.630 0.00 0.00 0.00 2.83
2014 2157 8.237267 TCTTGTTTGTTTGTTTGTTTGTTTGTT 58.763 25.926 0.00 0.00 0.00 2.83
2015 2158 8.742554 TTGTTTGTTTGTTTGTTTGTTTGTTT 57.257 23.077 0.00 0.00 0.00 2.83
2016 2159 8.161754 TGTTTGTTTGTTTGTTTGTTTGTTTG 57.838 26.923 0.00 0.00 0.00 2.93
2017 2160 7.807907 TGTTTGTTTGTTTGTTTGTTTGTTTGT 59.192 25.926 0.00 0.00 0.00 2.83
2018 2161 8.639428 GTTTGTTTGTTTGTTTGTTTGTTTGTT 58.361 25.926 0.00 0.00 0.00 2.83
2019 2162 7.954906 TGTTTGTTTGTTTGTTTGTTTGTTC 57.045 28.000 0.00 0.00 0.00 3.18
2020 2163 7.752695 TGTTTGTTTGTTTGTTTGTTTGTTCT 58.247 26.923 0.00 0.00 0.00 3.01
2021 2164 7.693951 TGTTTGTTTGTTTGTTTGTTTGTTCTG 59.306 29.630 0.00 0.00 0.00 3.02
2022 2165 6.910536 TGTTTGTTTGTTTGTTTGTTCTGT 57.089 29.167 0.00 0.00 0.00 3.41
2023 2166 7.308782 TGTTTGTTTGTTTGTTTGTTCTGTT 57.691 28.000 0.00 0.00 0.00 3.16
2024 2167 7.752695 TGTTTGTTTGTTTGTTTGTTCTGTTT 58.247 26.923 0.00 0.00 0.00 2.83
2025 2168 7.693951 TGTTTGTTTGTTTGTTTGTTCTGTTTG 59.306 29.630 0.00 0.00 0.00 2.93
2026 2169 6.910536 TGTTTGTTTGTTTGTTCTGTTTGT 57.089 29.167 0.00 0.00 0.00 2.83
2027 2170 6.709643 TGTTTGTTTGTTTGTTCTGTTTGTG 58.290 32.000 0.00 0.00 0.00 3.33
2032 2175 5.991328 TTGTTTGTTCTGTTTGTGCAAAA 57.009 30.435 0.00 0.00 31.99 2.44
2046 2189 4.047822 TGTGCAAAATGCCGTTTTTAGAG 58.952 39.130 0.00 0.00 44.23 2.43
2047 2190 4.202060 TGTGCAAAATGCCGTTTTTAGAGA 60.202 37.500 0.00 0.00 44.23 3.10
2048 2191 4.742659 GTGCAAAATGCCGTTTTTAGAGAA 59.257 37.500 0.00 0.00 44.23 2.87
2049 2192 5.405269 GTGCAAAATGCCGTTTTTAGAGAAT 59.595 36.000 0.00 0.00 44.23 2.40
2053 2196 7.501515 CAAAATGCCGTTTTTAGAGAATGAAC 58.498 34.615 0.00 0.00 37.93 3.18
2067 2210 2.503895 ATGAACCAGGCAGGAGAAAG 57.496 50.000 1.67 0.00 41.22 2.62
2077 2220 3.526841 AGGCAGGAGAAAGGATCTTTCAT 59.473 43.478 18.75 7.34 38.96 2.57
2080 2223 5.704978 GGCAGGAGAAAGGATCTTTCATATC 59.295 44.000 18.75 9.99 38.96 1.63
2089 2232 5.798132 AGGATCTTTCATATCGCTTATGCA 58.202 37.500 1.16 0.00 38.07 3.96
2106 2249 7.331934 CGCTTATGCATCCACTATTATGTTAGT 59.668 37.037 0.19 0.00 39.64 2.24
2155 2298 6.828273 TGAAGGAATATTGTATGGTCAAGGTG 59.172 38.462 0.00 0.00 0.00 4.00
2170 2313 6.386927 TGGTCAAGGTGTAGAAGGATTGATAT 59.613 38.462 0.00 0.00 0.00 1.63
2172 2315 8.091449 GGTCAAGGTGTAGAAGGATTGATATAG 58.909 40.741 0.00 0.00 0.00 1.31
2173 2316 8.861086 GTCAAGGTGTAGAAGGATTGATATAGA 58.139 37.037 0.00 0.00 0.00 1.98
2174 2317 9.607333 TCAAGGTGTAGAAGGATTGATATAGAT 57.393 33.333 0.00 0.00 0.00 1.98
2175 2318 9.868277 CAAGGTGTAGAAGGATTGATATAGATC 57.132 37.037 0.00 0.00 0.00 2.75
2176 2319 8.602472 AGGTGTAGAAGGATTGATATAGATCC 57.398 38.462 8.23 8.23 41.75 3.36
2177 2320 8.180165 AGGTGTAGAAGGATTGATATAGATCCA 58.820 37.037 15.59 0.00 43.47 3.41
2178 2321 8.816894 GGTGTAGAAGGATTGATATAGATCCAA 58.183 37.037 15.59 0.00 43.47 3.53
2245 2425 8.836413 TCCATTCAAGAACGGCTAATAAATAAG 58.164 33.333 0.00 0.00 0.00 1.73
2263 2443 2.706339 AGTAAGCAATGAGGCAGGAG 57.294 50.000 0.00 0.00 35.83 3.69
2278 2470 2.935201 GCAGGAGAGTCATGTTCACATC 59.065 50.000 0.00 0.00 33.61 3.06
2281 2473 5.347342 CAGGAGAGTCATGTTCACATCTAC 58.653 45.833 0.00 0.00 33.61 2.59
2283 2475 4.355437 GAGAGTCATGTTCACATCTACGG 58.645 47.826 0.00 0.00 33.61 4.02
2294 2486 6.309494 TGTTCACATCTACGGTTTTATCTTCG 59.691 38.462 0.00 0.00 0.00 3.79
2296 2488 6.032094 TCACATCTACGGTTTTATCTTCGAC 58.968 40.000 0.00 0.00 0.00 4.20
2308 2500 7.097168 GGTTTTATCTTCGACGTTGTTTCAAAG 60.097 37.037 1.96 0.00 0.00 2.77
2310 2502 4.932268 TCTTCGACGTTGTTTCAAAGTT 57.068 36.364 1.96 0.00 0.00 2.66
2371 2590 7.546358 TCACAAGTTGTTTGATTTGAATCAGT 58.454 30.769 5.57 0.00 45.35 3.41
2388 2607 7.426410 TGAATCAGTCTCATAAGATCCGTTAC 58.574 38.462 0.00 0.00 33.08 2.50
2391 2610 6.120220 TCAGTCTCATAAGATCCGTTACAGA 58.880 40.000 0.00 0.00 33.08 3.41
2405 2624 2.934553 GTTACAGACGGGGTGCTATTTC 59.065 50.000 0.00 0.00 0.00 2.17
2406 2625 1.276622 ACAGACGGGGTGCTATTTCT 58.723 50.000 0.00 0.00 0.00 2.52
2419 2638 7.039293 GGGGTGCTATTTCTTTTCTTTCCTTTA 60.039 37.037 0.00 0.00 0.00 1.85
2435 2654 8.780249 TCTTTCCTTTAAAAGATAGTTGGAACG 58.220 33.333 4.76 2.85 39.67 3.95
2436 2655 6.490566 TCCTTTAAAAGATAGTTGGAACGC 57.509 37.500 0.00 0.00 0.00 4.84
2438 2657 6.148811 TCCTTTAAAAGATAGTTGGAACGCTG 59.851 38.462 0.00 0.00 0.00 5.18
2439 2658 6.148811 CCTTTAAAAGATAGTTGGAACGCTGA 59.851 38.462 0.00 0.00 0.00 4.26
2446 5783 1.021968 GTTGGAACGCTGACCTTGTT 58.978 50.000 0.00 0.00 0.00 2.83
2448 5785 1.757682 TGGAACGCTGACCTTGTTTT 58.242 45.000 0.00 0.00 0.00 2.43
2449 5786 2.920524 TGGAACGCTGACCTTGTTTTA 58.079 42.857 0.00 0.00 0.00 1.52
2450 5787 3.280295 TGGAACGCTGACCTTGTTTTAA 58.720 40.909 0.00 0.00 0.00 1.52
2452 5789 3.297472 GAACGCTGACCTTGTTTTAAGC 58.703 45.455 0.00 0.00 0.00 3.09
2456 5793 3.003275 CGCTGACCTTGTTTTAAGCAAGA 59.997 43.478 20.32 2.85 44.29 3.02
2458 5795 5.106712 CGCTGACCTTGTTTTAAGCAAGATA 60.107 40.000 20.32 7.39 44.29 1.98
2466 5803 9.185192 CCTTGTTTTAAGCAAGATAGAAGTTTG 57.815 33.333 20.32 0.00 44.29 2.93
2467 5804 9.736023 CTTGTTTTAAGCAAGATAGAAGTTTGT 57.264 29.630 14.90 0.00 44.29 2.83
2472 5809 9.893305 TTTAAGCAAGATAGAAGTTTGTTAAGC 57.107 29.630 0.00 0.00 0.00 3.09
2473 5810 6.502136 AGCAAGATAGAAGTTTGTTAAGCC 57.498 37.500 0.00 0.00 0.00 4.35
2474 5811 6.241645 AGCAAGATAGAAGTTTGTTAAGCCT 58.758 36.000 0.00 0.00 0.00 4.58
2475 5812 6.150140 AGCAAGATAGAAGTTTGTTAAGCCTG 59.850 38.462 0.00 0.00 0.00 4.85
2502 5871 5.973899 TTTATGTTTAGTTGCATCTGCCA 57.026 34.783 7.57 2.09 41.18 4.92
2503 5872 5.565592 TTATGTTTAGTTGCATCTGCCAG 57.434 39.130 7.57 0.00 41.18 4.85
2507 5876 4.253685 GTTTAGTTGCATCTGCCAGACTA 58.746 43.478 7.57 0.00 41.18 2.59
2513 5882 5.762218 AGTTGCATCTGCCAGACTATTATTC 59.238 40.000 0.00 0.00 41.18 1.75
2521 5890 3.817647 GCCAGACTATTATTCCAGCTTGG 59.182 47.826 0.00 0.00 39.43 3.61
2525 5894 5.297776 CAGACTATTATTCCAGCTTGGGTTG 59.702 44.000 2.86 0.00 38.32 3.77
2528 5897 2.530460 TATTCCAGCTTGGGTTGCAT 57.470 45.000 0.00 0.00 38.32 3.96
2533 5902 1.067635 CCAGCTTGGGTTGCATGTTAC 60.068 52.381 0.00 0.00 32.67 2.50
2537 5906 1.528292 TTGGGTTGCATGTTACGGCC 61.528 55.000 0.00 0.00 0.00 6.13
2543 5912 1.455248 TGCATGTTACGGCCCTAAAC 58.545 50.000 0.00 0.00 0.00 2.01
2544 5913 0.375803 GCATGTTACGGCCCTAAACG 59.624 55.000 0.00 0.00 0.00 3.60
2545 5914 0.375803 CATGTTACGGCCCTAAACGC 59.624 55.000 0.00 0.00 0.00 4.84
2567 5936 4.676924 GCATAAAAGTGAGTGTTTGCAGTC 59.323 41.667 0.00 0.00 43.55 3.51
2576 5945 5.606505 TGAGTGTTTGCAGTCAGTTACATA 58.393 37.500 1.44 0.00 46.69 2.29
2578 5947 7.382898 TGAGTGTTTGCAGTCAGTTACATATA 58.617 34.615 1.44 0.00 46.69 0.86
2582 5951 8.664798 GTGTTTGCAGTCAGTTACATATATCAA 58.335 33.333 0.00 0.00 0.00 2.57
2607 5976 8.421249 AATTCAGTTGAGGACAATATTTCCAA 57.579 30.769 14.95 4.70 38.32 3.53
2615 5984 5.203528 AGGACAATATTTCCAATGGGACAG 58.796 41.667 14.95 0.00 44.89 3.51
2618 5987 6.405842 GGACAATATTTCCAATGGGACAGAAC 60.406 42.308 0.00 0.00 44.89 3.01
2619 5988 9.487026 GGACAATATTTCCAATGGGACAGAACG 62.487 44.444 0.00 0.00 44.89 3.95
2662 6032 7.674348 TGTAATACTATATGCTGTAGCTCCCTT 59.326 37.037 5.38 0.00 42.66 3.95
2671 6052 2.485814 CTGTAGCTCCCTTTTTGCAGTC 59.514 50.000 0.00 0.00 0.00 3.51
2709 6090 8.579006 TCAAATTCAGTTGAGAACAATATTGCT 58.421 29.630 15.48 2.79 38.32 3.91
2719 6100 5.431765 AGAACAATATTGCTAGTGGGACAG 58.568 41.667 15.48 0.00 41.80 3.51
2720 6101 5.189736 AGAACAATATTGCTAGTGGGACAGA 59.810 40.000 15.48 0.00 41.80 3.41
2723 6104 5.648092 ACAATATTGCTAGTGGGACAGAAAC 59.352 40.000 15.48 0.00 41.80 2.78
2727 6108 1.272769 GCTAGTGGGACAGAAACGAGT 59.727 52.381 0.00 0.00 41.80 4.18
2744 6125 3.741344 ACGAGTGTTTGCAGTTCATAGTC 59.259 43.478 0.00 0.00 0.00 2.59
2749 6130 3.120234 TGTTTGCAGTTCATAGTCGCATG 60.120 43.478 0.00 0.00 31.67 4.06
2752 6133 1.667724 GCAGTTCATAGTCGCATGCTT 59.332 47.619 17.13 3.76 0.00 3.91
2760 6141 4.635324 TCATAGTCGCATGCTTCAAATTCA 59.365 37.500 17.13 0.00 0.00 2.57
2761 6142 3.482722 AGTCGCATGCTTCAAATTCAG 57.517 42.857 17.13 0.00 0.00 3.02
2769 6150 5.118203 GCATGCTTCAAATTCAGTTGAGAAC 59.882 40.000 11.37 0.00 38.69 3.01
2770 6151 5.833406 TGCTTCAAATTCAGTTGAGAACA 57.167 34.783 0.00 0.00 38.69 3.18
2772 6153 6.808829 TGCTTCAAATTCAGTTGAGAACAAT 58.191 32.000 0.00 0.00 38.69 2.71
2773 6154 7.939782 TGCTTCAAATTCAGTTGAGAACAATA 58.060 30.769 0.00 0.00 38.69 1.90
2774 6155 8.579006 TGCTTCAAATTCAGTTGAGAACAATAT 58.421 29.630 0.00 0.00 38.69 1.28
2777 6158 8.746922 TCAAATTCAGTTGAGAACAATATTGC 57.253 30.769 15.48 0.15 38.32 3.56
2778 6159 7.814107 TCAAATTCAGTTGAGAACAATATTGCC 59.186 33.333 15.48 7.74 38.32 4.52
2779 6160 6.839124 ATTCAGTTGAGAACAATATTGCCA 57.161 33.333 15.48 5.94 38.32 4.92
2780 6161 6.647334 TTCAGTTGAGAACAATATTGCCAA 57.353 33.333 15.48 11.14 38.32 4.52
2781 6162 6.839124 TCAGTTGAGAACAATATTGCCAAT 57.161 33.333 15.48 0.00 38.32 3.16
2782 6163 6.623486 TCAGTTGAGAACAATATTGCCAATG 58.377 36.000 15.48 12.62 38.32 2.82
2783 6164 6.209192 TCAGTTGAGAACAATATTGCCAATGT 59.791 34.615 15.48 0.00 38.32 2.71
2784 6165 6.869913 CAGTTGAGAACAATATTGCCAATGTT 59.130 34.615 15.48 1.54 38.62 2.71
2785 6166 6.869913 AGTTGAGAACAATATTGCCAATGTTG 59.130 34.615 21.01 21.01 43.21 3.33
2791 6172 4.931002 ACAATATTGCCAATGTTGTTCTGC 59.069 37.500 22.15 0.00 46.68 4.26
2792 6173 5.172934 CAATATTGCCAATGTTGTTCTGCT 58.827 37.500 16.18 0.00 35.87 4.24
2793 6174 3.756933 ATTGCCAATGTTGTTCTGCTT 57.243 38.095 0.00 0.00 0.00 3.91
2794 6175 2.798976 TGCCAATGTTGTTCTGCTTC 57.201 45.000 0.00 0.00 0.00 3.86
2795 6176 2.309613 TGCCAATGTTGTTCTGCTTCT 58.690 42.857 0.00 0.00 0.00 2.85
2796 6177 2.034939 TGCCAATGTTGTTCTGCTTCTG 59.965 45.455 0.00 0.00 0.00 3.02
2797 6178 2.669364 CCAATGTTGTTCTGCTTCTGC 58.331 47.619 0.00 0.00 40.20 4.26
2798 6179 2.608752 CCAATGTTGTTCTGCTTCTGCC 60.609 50.000 0.00 0.00 38.71 4.85
2799 6180 1.251251 ATGTTGTTCTGCTTCTGCCC 58.749 50.000 0.00 0.00 38.71 5.36
2800 6181 0.106769 TGTTGTTCTGCTTCTGCCCA 60.107 50.000 0.00 0.00 38.71 5.36
2801 6182 1.251251 GTTGTTCTGCTTCTGCCCAT 58.749 50.000 0.00 0.00 38.71 4.00
2802 6183 1.068055 GTTGTTCTGCTTCTGCCCATG 60.068 52.381 0.00 0.00 38.71 3.66
2803 6184 0.111061 TGTTCTGCTTCTGCCCATGT 59.889 50.000 0.00 0.00 38.71 3.21
2804 6185 0.524862 GTTCTGCTTCTGCCCATGTG 59.475 55.000 0.00 0.00 38.71 3.21
2805 6186 0.401356 TTCTGCTTCTGCCCATGTGA 59.599 50.000 0.00 0.00 38.71 3.58
2806 6187 0.622136 TCTGCTTCTGCCCATGTGAT 59.378 50.000 0.00 0.00 38.71 3.06
2807 6188 1.839354 TCTGCTTCTGCCCATGTGATA 59.161 47.619 0.00 0.00 38.71 2.15
2808 6189 1.945394 CTGCTTCTGCCCATGTGATAC 59.055 52.381 0.00 0.00 38.71 2.24
2809 6190 1.561076 TGCTTCTGCCCATGTGATACT 59.439 47.619 0.00 0.00 38.71 2.12
2810 6191 2.771372 TGCTTCTGCCCATGTGATACTA 59.229 45.455 0.00 0.00 38.71 1.82
2811 6192 3.392285 TGCTTCTGCCCATGTGATACTAT 59.608 43.478 0.00 0.00 38.71 2.12
2812 6193 3.750130 GCTTCTGCCCATGTGATACTATG 59.250 47.826 0.00 0.00 0.00 2.23
2813 6194 4.744867 GCTTCTGCCCATGTGATACTATGT 60.745 45.833 0.00 0.00 0.00 2.29
2814 6195 5.511373 GCTTCTGCCCATGTGATACTATGTA 60.511 44.000 0.00 0.00 0.00 2.29
2815 6196 6.686484 TTCTGCCCATGTGATACTATGTAT 57.314 37.500 0.00 0.00 0.00 2.29
2816 6197 7.579531 GCTTCTGCCCATGTGATACTATGTATA 60.580 40.741 0.00 0.00 0.00 1.47
2817 6198 7.170393 TCTGCCCATGTGATACTATGTATAC 57.830 40.000 0.00 0.00 0.00 1.47
2818 6199 6.954102 TCTGCCCATGTGATACTATGTATACT 59.046 38.462 4.17 0.00 0.00 2.12
2819 6200 8.113462 TCTGCCCATGTGATACTATGTATACTA 58.887 37.037 4.17 0.00 0.00 1.82
2820 6201 8.838649 TGCCCATGTGATACTATGTATACTAT 57.161 34.615 4.17 0.00 0.00 2.12
2821 6202 9.930158 TGCCCATGTGATACTATGTATACTATA 57.070 33.333 4.17 0.45 0.00 1.31
2826 6207 8.991783 TGTGATACTATGTATACTATAGCCCC 57.008 38.462 16.09 9.55 32.58 5.80
2827 6208 8.788799 TGTGATACTATGTATACTATAGCCCCT 58.211 37.037 16.09 5.83 32.58 4.79
2828 6209 9.643735 GTGATACTATGTATACTATAGCCCCTT 57.356 37.037 16.09 5.60 32.58 3.95
2836 6217 8.768501 TGTATACTATAGCCCCTTATGATCTG 57.231 38.462 4.17 0.00 0.00 2.90
2837 6218 8.344546 TGTATACTATAGCCCCTTATGATCTGT 58.655 37.037 4.17 0.00 0.00 3.41
2838 6219 9.203163 GTATACTATAGCCCCTTATGATCTGTT 57.797 37.037 0.00 0.00 0.00 3.16
2839 6220 6.613153 ACTATAGCCCCTTATGATCTGTTC 57.387 41.667 0.00 0.00 0.00 3.18
2840 6221 4.917906 ATAGCCCCTTATGATCTGTTCC 57.082 45.455 0.00 0.00 0.00 3.62
2841 6222 2.492025 AGCCCCTTATGATCTGTTCCA 58.508 47.619 0.00 0.00 0.00 3.53
2842 6223 2.173569 AGCCCCTTATGATCTGTTCCAC 59.826 50.000 0.00 0.00 0.00 4.02
2843 6224 2.173569 GCCCCTTATGATCTGTTCCACT 59.826 50.000 0.00 0.00 0.00 4.00
2844 6225 3.372025 GCCCCTTATGATCTGTTCCACTT 60.372 47.826 0.00 0.00 0.00 3.16
2845 6226 4.860022 CCCCTTATGATCTGTTCCACTTT 58.140 43.478 0.00 0.00 0.00 2.66
2846 6227 4.641989 CCCCTTATGATCTGTTCCACTTTG 59.358 45.833 0.00 0.00 0.00 2.77
2847 6228 4.096984 CCCTTATGATCTGTTCCACTTTGC 59.903 45.833 0.00 0.00 0.00 3.68
2848 6229 4.946157 CCTTATGATCTGTTCCACTTTGCT 59.054 41.667 0.00 0.00 0.00 3.91
2849 6230 5.065731 CCTTATGATCTGTTCCACTTTGCTC 59.934 44.000 0.00 0.00 0.00 4.26
2850 6231 3.490439 TGATCTGTTCCACTTTGCTCA 57.510 42.857 0.00 0.00 0.00 4.26
2851 6232 4.025040 TGATCTGTTCCACTTTGCTCAT 57.975 40.909 0.00 0.00 0.00 2.90
2852 6233 5.164620 TGATCTGTTCCACTTTGCTCATA 57.835 39.130 0.00 0.00 0.00 2.15
2853 6234 5.748402 TGATCTGTTCCACTTTGCTCATAT 58.252 37.500 0.00 0.00 0.00 1.78
2854 6235 6.888105 TGATCTGTTCCACTTTGCTCATATA 58.112 36.000 0.00 0.00 0.00 0.86
2855 6236 7.512130 TGATCTGTTCCACTTTGCTCATATAT 58.488 34.615 0.00 0.00 0.00 0.86
2856 6237 8.650490 TGATCTGTTCCACTTTGCTCATATATA 58.350 33.333 0.00 0.00 0.00 0.86
2857 6238 9.494271 GATCTGTTCCACTTTGCTCATATATAA 57.506 33.333 0.00 0.00 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.442526 GCAGAGTGTTGTGTGCTGCT 61.443 55.000 0.00 0.00 46.17 4.24
1 2 1.009222 GCAGAGTGTTGTGTGCTGC 60.009 57.895 0.00 0.00 44.11 5.25
5 6 1.667236 TTGAGGCAGAGTGTTGTGTG 58.333 50.000 0.00 0.00 0.00 3.82
6 7 2.092968 TCTTTGAGGCAGAGTGTTGTGT 60.093 45.455 0.00 0.00 0.00 3.72
8 9 3.281727 TTCTTTGAGGCAGAGTGTTGT 57.718 42.857 0.00 0.00 0.00 3.32
9 10 4.637483 TTTTCTTTGAGGCAGAGTGTTG 57.363 40.909 0.00 0.00 0.00 3.33
30 31 1.268032 CGAGTCTTGTGTGCGCTTTTT 60.268 47.619 9.73 0.00 0.00 1.94
31 32 0.304705 CGAGTCTTGTGTGCGCTTTT 59.695 50.000 9.73 0.00 0.00 2.27
32 33 1.934463 CGAGTCTTGTGTGCGCTTT 59.066 52.632 9.73 0.00 0.00 3.51
33 34 2.598632 GCGAGTCTTGTGTGCGCTT 61.599 57.895 9.73 0.00 43.85 4.68
34 35 3.038417 GCGAGTCTTGTGTGCGCT 61.038 61.111 9.73 0.00 43.85 5.92
36 37 1.417592 GATGCGAGTCTTGTGTGCG 59.582 57.895 0.00 0.00 0.00 5.34
37 38 1.008875 TCGATGCGAGTCTTGTGTGC 61.009 55.000 0.00 0.00 0.00 4.57
38 39 3.107017 TCGATGCGAGTCTTGTGTG 57.893 52.632 0.00 0.00 0.00 3.82
48 49 1.067416 CCGGAAATCCTCGATGCGA 59.933 57.895 0.00 0.00 0.00 5.10
49 50 2.598632 GCCGGAAATCCTCGATGCG 61.599 63.158 5.05 0.00 0.00 4.73
50 51 2.598632 CGCCGGAAATCCTCGATGC 61.599 63.158 5.05 0.00 33.53 3.91
51 52 1.956170 CCGCCGGAAATCCTCGATG 60.956 63.158 5.05 0.00 33.53 3.84
52 53 2.421739 CCGCCGGAAATCCTCGAT 59.578 61.111 5.05 0.00 33.53 3.59
53 54 4.524318 GCCGCCGGAAATCCTCGA 62.524 66.667 7.68 0.00 33.53 4.04
70 71 4.715523 TGGAAAGGGAAGCGCCGG 62.716 66.667 2.29 0.00 37.63 6.13
71 72 3.431725 GTGGAAAGGGAAGCGCCG 61.432 66.667 2.29 0.00 37.63 6.46
72 73 2.282180 TGTGGAAAGGGAAGCGCC 60.282 61.111 2.29 0.00 0.00 6.53
73 74 1.578206 GACTGTGGAAAGGGAAGCGC 61.578 60.000 0.00 0.00 0.00 5.92
74 75 0.955919 GGACTGTGGAAAGGGAAGCG 60.956 60.000 0.00 0.00 0.00 4.68
75 76 0.110486 TGGACTGTGGAAAGGGAAGC 59.890 55.000 0.00 0.00 0.00 3.86
76 77 1.878102 CGTGGACTGTGGAAAGGGAAG 60.878 57.143 0.00 0.00 0.00 3.46
77 78 0.107831 CGTGGACTGTGGAAAGGGAA 59.892 55.000 0.00 0.00 0.00 3.97
78 79 1.752198 CGTGGACTGTGGAAAGGGA 59.248 57.895 0.00 0.00 0.00 4.20
79 80 1.966451 GCGTGGACTGTGGAAAGGG 60.966 63.158 0.00 0.00 0.00 3.95
80 81 1.966451 GGCGTGGACTGTGGAAAGG 60.966 63.158 0.00 0.00 0.00 3.11
81 82 0.817634 TTGGCGTGGACTGTGGAAAG 60.818 55.000 0.00 0.00 0.00 2.62
82 83 0.179004 ATTGGCGTGGACTGTGGAAA 60.179 50.000 0.00 0.00 0.00 3.13
83 84 0.888736 CATTGGCGTGGACTGTGGAA 60.889 55.000 0.00 0.00 0.00 3.53
84 85 1.302431 CATTGGCGTGGACTGTGGA 60.302 57.895 0.00 0.00 0.00 4.02
85 86 1.302431 TCATTGGCGTGGACTGTGG 60.302 57.895 0.00 0.00 0.00 4.17
86 87 1.868997 GTCATTGGCGTGGACTGTG 59.131 57.895 0.00 0.00 0.00 3.66
87 88 1.667830 CGTCATTGGCGTGGACTGT 60.668 57.895 1.71 0.00 0.00 3.55
88 89 1.374125 TCGTCATTGGCGTGGACTG 60.374 57.895 10.85 0.00 0.00 3.51
89 90 1.374252 GTCGTCATTGGCGTGGACT 60.374 57.895 10.85 0.00 0.00 3.85
90 91 2.388232 GGTCGTCATTGGCGTGGAC 61.388 63.158 10.85 1.44 0.00 4.02
91 92 2.047655 GGTCGTCATTGGCGTGGA 60.048 61.111 10.85 0.00 0.00 4.02
92 93 3.124921 GGGTCGTCATTGGCGTGG 61.125 66.667 10.85 0.00 0.00 4.94
93 94 3.487202 CGGGTCGTCATTGGCGTG 61.487 66.667 10.85 0.00 0.00 5.34
96 97 3.039202 CTTGCGGGTCGTCATTGGC 62.039 63.158 0.00 0.00 0.00 4.52
97 98 0.953471 TTCTTGCGGGTCGTCATTGG 60.953 55.000 0.00 0.00 0.00 3.16
98 99 0.871722 TTTCTTGCGGGTCGTCATTG 59.128 50.000 0.00 0.00 0.00 2.82
99 100 1.600023 TTTTCTTGCGGGTCGTCATT 58.400 45.000 0.00 0.00 0.00 2.57
100 101 1.737793 GATTTTCTTGCGGGTCGTCAT 59.262 47.619 0.00 0.00 0.00 3.06
101 102 1.153353 GATTTTCTTGCGGGTCGTCA 58.847 50.000 0.00 0.00 0.00 4.35
102 103 0.446616 GGATTTTCTTGCGGGTCGTC 59.553 55.000 0.00 0.00 0.00 4.20
103 104 0.250553 TGGATTTTCTTGCGGGTCGT 60.251 50.000 0.00 0.00 0.00 4.34
104 105 0.168128 GTGGATTTTCTTGCGGGTCG 59.832 55.000 0.00 0.00 0.00 4.79
105 106 1.468914 GAGTGGATTTTCTTGCGGGTC 59.531 52.381 0.00 0.00 0.00 4.46
106 107 1.202879 TGAGTGGATTTTCTTGCGGGT 60.203 47.619 0.00 0.00 0.00 5.28
107 108 1.200020 GTGAGTGGATTTTCTTGCGGG 59.800 52.381 0.00 0.00 0.00 6.13
108 109 1.200020 GGTGAGTGGATTTTCTTGCGG 59.800 52.381 0.00 0.00 0.00 5.69
109 110 2.154462 AGGTGAGTGGATTTTCTTGCG 58.846 47.619 0.00 0.00 0.00 4.85
110 111 3.190118 CAGAGGTGAGTGGATTTTCTTGC 59.810 47.826 0.00 0.00 0.00 4.01
111 112 3.190118 GCAGAGGTGAGTGGATTTTCTTG 59.810 47.826 0.00 0.00 0.00 3.02
112 113 3.416156 GCAGAGGTGAGTGGATTTTCTT 58.584 45.455 0.00 0.00 0.00 2.52
113 114 2.290577 GGCAGAGGTGAGTGGATTTTCT 60.291 50.000 0.00 0.00 0.00 2.52
114 115 2.087646 GGCAGAGGTGAGTGGATTTTC 58.912 52.381 0.00 0.00 0.00 2.29
115 116 1.707427 AGGCAGAGGTGAGTGGATTTT 59.293 47.619 0.00 0.00 0.00 1.82
116 117 1.004044 CAGGCAGAGGTGAGTGGATTT 59.996 52.381 0.00 0.00 0.00 2.17
117 118 0.617413 CAGGCAGAGGTGAGTGGATT 59.383 55.000 0.00 0.00 0.00 3.01
118 119 0.252421 TCAGGCAGAGGTGAGTGGAT 60.252 55.000 0.00 0.00 0.00 3.41
119 120 0.902048 CTCAGGCAGAGGTGAGTGGA 60.902 60.000 0.00 0.00 40.84 4.02
120 121 0.902048 TCTCAGGCAGAGGTGAGTGG 60.902 60.000 7.09 0.00 44.81 4.00
121 122 1.136695 GATCTCAGGCAGAGGTGAGTG 59.863 57.143 7.09 0.00 44.81 3.51
122 123 1.484038 GATCTCAGGCAGAGGTGAGT 58.516 55.000 7.09 0.00 44.81 3.41
123 124 0.752054 GGATCTCAGGCAGAGGTGAG 59.248 60.000 7.09 0.64 44.81 3.51
124 125 0.689080 GGGATCTCAGGCAGAGGTGA 60.689 60.000 7.09 0.00 44.81 4.02
125 126 1.694133 GGGGATCTCAGGCAGAGGTG 61.694 65.000 7.09 0.00 44.81 4.00
126 127 1.383803 GGGGATCTCAGGCAGAGGT 60.384 63.158 7.09 0.00 44.81 3.85
127 128 2.506061 CGGGGATCTCAGGCAGAGG 61.506 68.421 7.09 0.00 44.81 3.69
128 129 2.506061 CCGGGGATCTCAGGCAGAG 61.506 68.421 0.00 0.00 46.14 3.35
129 130 2.444706 CCGGGGATCTCAGGCAGA 60.445 66.667 0.00 0.00 34.78 4.26
136 137 3.804638 TAGTCCGGCCGGGGATCTC 62.805 68.421 42.36 24.01 38.61 2.75
137 138 3.384555 TTAGTCCGGCCGGGGATCT 62.385 63.158 42.36 32.23 38.61 2.75
138 139 2.841044 TTAGTCCGGCCGGGGATC 60.841 66.667 42.36 27.97 38.61 3.36
139 140 2.674672 ATCTTAGTCCGGCCGGGGAT 62.675 60.000 42.36 29.97 38.61 3.85
140 141 3.384555 ATCTTAGTCCGGCCGGGGA 62.385 63.158 42.36 29.25 36.01 4.81
141 142 2.842936 ATCTTAGTCCGGCCGGGG 60.843 66.667 42.36 25.58 36.01 5.73
142 143 2.735237 GATCTTAGTCCGGCCGGG 59.265 66.667 42.36 26.58 35.59 5.73
143 144 2.088674 CTGGATCTTAGTCCGGCCGG 62.089 65.000 39.13 39.13 41.35 6.13
144 145 1.364171 CTGGATCTTAGTCCGGCCG 59.636 63.158 21.04 21.04 41.35 6.13
145 146 0.105039 CACTGGATCTTAGTCCGGCC 59.895 60.000 0.00 0.00 46.64 6.13
146 147 0.530870 GCACTGGATCTTAGTCCGGC 60.531 60.000 0.00 0.00 46.64 6.13
154 155 4.946157 CACTTGATAAAGGCACTGGATCTT 59.054 41.667 0.00 0.00 40.86 2.40
246 247 5.621193 TGCTAAGTGTTAAGAGCCTTTTCT 58.379 37.500 0.00 0.00 33.87 2.52
258 259 6.594159 GCTATCCTGAAAACTGCTAAGTGTTA 59.406 38.462 0.00 0.00 33.75 2.41
293 294 4.083057 TGCATCGTTGTTTGCAGCTTATTA 60.083 37.500 0.00 0.00 43.54 0.98
317 318 6.655078 AATAAAACTGAGTTCAAGTGCCAT 57.345 33.333 0.00 0.00 0.00 4.40
446 448 9.979578 TTAGTGTCAACTGCAATTGATTTATTT 57.020 25.926 14.40 0.52 40.60 1.40
606 621 3.392285 CTCCATCCAATCCACATCCTACA 59.608 47.826 0.00 0.00 0.00 2.74
662 677 1.834822 CCGGGGAGGACTGAGATCC 60.835 68.421 0.00 0.00 45.00 3.36
673 688 4.101448 CAAGAGGTGGCCGGGGAG 62.101 72.222 2.18 0.00 0.00 4.30
713 728 2.341101 GCGAGGTCTTCTGGGTCGA 61.341 63.158 0.00 0.00 32.32 4.20
1229 1280 2.270047 CGGCCATATTGGTTTTGCAAG 58.730 47.619 2.24 0.00 40.46 4.01
1287 1338 2.607811 CCAGGTCTGGGATGCAGTA 58.392 57.895 9.08 0.00 46.81 2.74
1300 1351 4.080863 GTCAATAACCAGATCACTCCAGGT 60.081 45.833 0.00 0.00 33.11 4.00
1317 1368 2.584835 ACAAAGGCTGCCTGTCAATA 57.415 45.000 24.16 0.00 32.13 1.90
1398 1473 2.397549 GTGTCAAGCACAAGCAAATCC 58.602 47.619 0.00 0.00 46.91 3.01
1434 1512 0.038166 GTGGGAGGTCAGCAATGGAA 59.962 55.000 0.00 0.00 0.00 3.53
1459 1537 3.189287 GCTATATCTTGCCGGTTCCATTG 59.811 47.826 1.90 0.00 0.00 2.82
1469 1547 5.065731 GCATCCACAATAGCTATATCTTGCC 59.934 44.000 6.68 0.00 0.00 4.52
1516 1597 7.624360 TTGCATTTCCATAACCTGTACTAAG 57.376 36.000 0.00 0.00 0.00 2.18
1541 1622 9.159254 TGGTATAACAGAGATAAGATTCACCAT 57.841 33.333 0.00 0.00 0.00 3.55
1592 1673 4.147449 CCATCTGCCACTCGCCGA 62.147 66.667 0.00 0.00 34.97 5.54
1630 1711 5.181811 CACCTACAATACGATACCGATACCA 59.818 44.000 0.00 0.00 39.50 3.25
1647 1728 4.737578 AGTACTTCTCTGTTCCACCTACA 58.262 43.478 0.00 0.00 0.00 2.74
1649 1730 5.391256 TCAAGTACTTCTCTGTTCCACCTA 58.609 41.667 4.77 0.00 0.00 3.08
1690 1771 1.772836 AGCGATAAGTACTTCGGGGT 58.227 50.000 12.39 5.06 35.93 4.95
1694 1775 3.243301 TGGGCTAAGCGATAAGTACTTCG 60.243 47.826 12.39 12.01 38.37 3.79
1710 1794 3.686227 AATTCCATGATTGGTGGGCTA 57.314 42.857 0.00 0.00 44.06 3.93
1712 1796 3.272581 CAAAATTCCATGATTGGTGGGC 58.727 45.455 0.00 0.00 44.06 5.36
1747 1831 1.081892 CTCTCAACCTGCATTGTCCG 58.918 55.000 0.22 0.00 0.00 4.79
1791 1875 1.418637 AGGCACACTTTAGAACCGGAA 59.581 47.619 9.46 0.00 0.00 4.30
1805 1889 1.070134 GGAAGTCGGCATATAGGCACA 59.930 52.381 12.02 0.00 44.47 4.57
1808 1892 0.685097 TGGGAAGTCGGCATATAGGC 59.315 55.000 0.00 0.00 39.93 3.93
1810 1894 1.691976 TGGTGGGAAGTCGGCATATAG 59.308 52.381 0.00 0.00 0.00 1.31
1816 1900 2.511600 CGATGGTGGGAAGTCGGC 60.512 66.667 0.00 0.00 0.00 5.54
1819 1903 0.321653 AACAGCGATGGTGGGAAGTC 60.322 55.000 5.32 0.00 35.13 3.01
1844 1928 4.713824 TTACCTCTTCATACTGTCGGTG 57.286 45.455 0.00 0.00 0.00 4.94
1877 1961 6.719370 ACAACCAACTGCAATAGAAAAGGATA 59.281 34.615 0.00 0.00 0.00 2.59
1884 1968 5.359576 ACAAGAACAACCAACTGCAATAGAA 59.640 36.000 0.00 0.00 0.00 2.10
1885 1969 4.887071 ACAAGAACAACCAACTGCAATAGA 59.113 37.500 0.00 0.00 0.00 1.98
1886 1970 5.186996 ACAAGAACAACCAACTGCAATAG 57.813 39.130 0.00 0.00 0.00 1.73
1889 2031 3.951775 AACAAGAACAACCAACTGCAA 57.048 38.095 0.00 0.00 0.00 4.08
1926 2068 7.759489 TTCCACAAGCACAAGATAAATAACT 57.241 32.000 0.00 0.00 0.00 2.24
1963 2105 8.948853 ACAACGAATCACAATTAGTACATTTG 57.051 30.769 0.00 0.00 31.42 2.32
1965 2107 8.547967 AGACAACGAATCACAATTAGTACATT 57.452 30.769 0.00 0.00 31.42 2.71
1967 2109 7.439955 ACAAGACAACGAATCACAATTAGTACA 59.560 33.333 0.00 0.00 31.42 2.90
1978 2121 5.704888 ACAAACAAACAAGACAACGAATCA 58.295 33.333 0.00 0.00 0.00 2.57
1996 2139 7.694367 ACAGAACAAACAAACAAACAAACAAAC 59.306 29.630 0.00 0.00 0.00 2.93
2007 2150 4.371786 TGCACAAACAGAACAAACAAACA 58.628 34.783 0.00 0.00 0.00 2.83
2008 2151 4.981389 TGCACAAACAGAACAAACAAAC 57.019 36.364 0.00 0.00 0.00 2.93
2009 2152 5.991328 TTTGCACAAACAGAACAAACAAA 57.009 30.435 0.00 0.00 0.00 2.83
2010 2153 5.991328 TTTTGCACAAACAGAACAAACAA 57.009 30.435 0.00 0.00 30.49 2.83
2011 2154 5.616424 GCATTTTGCACAAACAGAACAAACA 60.616 36.000 0.00 0.00 44.26 2.83
2012 2155 4.787591 GCATTTTGCACAAACAGAACAAAC 59.212 37.500 0.00 0.00 44.26 2.93
2013 2156 4.967437 GCATTTTGCACAAACAGAACAAA 58.033 34.783 0.00 0.00 44.26 2.83
2014 2157 4.596801 GCATTTTGCACAAACAGAACAA 57.403 36.364 0.00 0.00 44.26 2.83
2027 2170 5.633182 TCATTCTCTAAAAACGGCATTTTGC 59.367 36.000 7.92 0.00 39.70 3.68
2032 2175 4.764823 TGGTTCATTCTCTAAAAACGGCAT 59.235 37.500 0.00 0.00 0.00 4.40
2046 2189 2.496899 TTCTCCTGCCTGGTTCATTC 57.503 50.000 0.00 0.00 37.07 2.67
2047 2190 2.556114 CCTTTCTCCTGCCTGGTTCATT 60.556 50.000 0.00 0.00 37.07 2.57
2048 2191 1.005215 CCTTTCTCCTGCCTGGTTCAT 59.995 52.381 0.00 0.00 37.07 2.57
2049 2192 0.401738 CCTTTCTCCTGCCTGGTTCA 59.598 55.000 0.00 0.00 37.07 3.18
2053 2196 1.211456 AGATCCTTTCTCCTGCCTGG 58.789 55.000 0.00 0.00 37.10 4.45
2067 2210 6.238320 GGATGCATAAGCGATATGAAAGATCC 60.238 42.308 14.42 13.11 43.52 3.36
2077 2220 7.555965 ACATAATAGTGGATGCATAAGCGATA 58.444 34.615 0.00 0.00 46.23 2.92
2080 2223 6.486253 AACATAATAGTGGATGCATAAGCG 57.514 37.500 0.00 0.00 46.23 4.68
2089 2232 8.727100 TCATGAGGACTAACATAATAGTGGAT 57.273 34.615 0.00 0.00 36.28 3.41
2131 2274 6.828785 ACACCTTGACCATACAATATTCCTTC 59.171 38.462 0.00 0.00 0.00 3.46
2142 2285 5.615925 ATCCTTCTACACCTTGACCATAC 57.384 43.478 0.00 0.00 0.00 2.39
2143 2286 5.724370 TCAATCCTTCTACACCTTGACCATA 59.276 40.000 0.00 0.00 0.00 2.74
2199 2342 9.803315 GAATGGAATGAATTTTCCTTAGGTTAC 57.197 33.333 9.74 0.00 44.63 2.50
2201 2344 8.434589 TGAATGGAATGAATTTTCCTTAGGTT 57.565 30.769 9.74 0.00 44.63 3.50
2208 2351 6.311200 CCGTTCTTGAATGGAATGAATTTTCC 59.689 38.462 14.63 2.41 44.60 3.13
2229 2372 9.116067 TCATTGCTTACTTATTTATTAGCCGTT 57.884 29.630 0.00 0.00 0.00 4.44
2245 2425 2.093235 ACTCTCCTGCCTCATTGCTTAC 60.093 50.000 0.00 0.00 0.00 2.34
2263 2443 4.111375 ACCGTAGATGTGAACATGACTC 57.889 45.455 0.00 0.00 36.57 3.36
2278 2470 4.618489 ACAACGTCGAAGATAAAACCGTAG 59.382 41.667 5.05 0.00 40.67 3.51
2281 2473 4.379374 AACAACGTCGAAGATAAAACCG 57.621 40.909 5.05 0.00 40.67 4.44
2283 2475 7.427318 ACTTTGAAACAACGTCGAAGATAAAAC 59.573 33.333 5.05 0.00 40.67 2.43
2324 2516 6.640499 GTGAGAACAAGCTATATAGAGCAGTG 59.360 42.308 20.82 18.62 45.43 3.66
2388 2607 2.403252 AAGAAATAGCACCCCGTCTG 57.597 50.000 0.00 0.00 0.00 3.51
2391 2610 3.434940 AGAAAAGAAATAGCACCCCGT 57.565 42.857 0.00 0.00 0.00 5.28
2419 2638 3.751698 GGTCAGCGTTCCAACTATCTTTT 59.248 43.478 0.00 0.00 0.00 2.27
2435 2654 4.568152 TCTTGCTTAAAACAAGGTCAGC 57.432 40.909 14.66 0.00 43.79 4.26
2436 2655 7.672983 TCTATCTTGCTTAAAACAAGGTCAG 57.327 36.000 14.66 10.56 43.79 3.51
2438 2657 8.100508 ACTTCTATCTTGCTTAAAACAAGGTC 57.899 34.615 14.66 0.00 43.79 3.85
2439 2658 8.465273 AACTTCTATCTTGCTTAAAACAAGGT 57.535 30.769 14.66 11.59 43.79 3.50
2446 5783 9.893305 GCTTAACAAACTTCTATCTTGCTTAAA 57.107 29.630 0.00 0.00 0.00 1.52
2448 5785 7.883311 AGGCTTAACAAACTTCTATCTTGCTTA 59.117 33.333 0.00 0.00 0.00 3.09
2449 5786 6.717084 AGGCTTAACAAACTTCTATCTTGCTT 59.283 34.615 0.00 0.00 0.00 3.91
2450 5787 6.150140 CAGGCTTAACAAACTTCTATCTTGCT 59.850 38.462 0.00 0.00 0.00 3.91
2452 5789 7.440523 ACAGGCTTAACAAACTTCTATCTTG 57.559 36.000 0.00 0.00 0.00 3.02
2469 5806 8.364142 TGCAACTAAACATAAATAAACAGGCTT 58.636 29.630 0.00 0.00 0.00 4.35
2470 5807 7.891561 TGCAACTAAACATAAATAAACAGGCT 58.108 30.769 0.00 0.00 0.00 4.58
2471 5808 8.702163 ATGCAACTAAACATAAATAAACAGGC 57.298 30.769 0.00 0.00 0.00 4.85
2474 5811 9.352784 GCAGATGCAACTAAACATAAATAAACA 57.647 29.630 0.00 0.00 41.59 2.83
2475 5812 8.807581 GGCAGATGCAACTAAACATAAATAAAC 58.192 33.333 7.19 0.00 44.36 2.01
2502 5871 5.440610 CAACCCAAGCTGGAATAATAGTCT 58.559 41.667 0.00 0.00 40.96 3.24
2503 5872 4.036852 GCAACCCAAGCTGGAATAATAGTC 59.963 45.833 0.00 0.00 40.96 2.59
2507 5876 2.818921 TGCAACCCAAGCTGGAATAAT 58.181 42.857 0.00 0.00 40.96 1.28
2513 5882 1.067635 GTAACATGCAACCCAAGCTGG 60.068 52.381 0.00 0.00 37.25 4.85
2521 5890 0.393267 TAGGGCCGTAACATGCAACC 60.393 55.000 1.78 0.00 0.00 3.77
2525 5894 0.375803 CGTTTAGGGCCGTAACATGC 59.624 55.000 17.30 7.57 0.00 4.06
2528 5897 0.036199 ATGCGTTTAGGGCCGTAACA 60.036 50.000 17.30 12.54 0.00 2.41
2533 5902 1.741145 ACTTTTATGCGTTTAGGGCCG 59.259 47.619 0.00 0.00 0.00 6.13
2537 5906 5.607119 ACACTCACTTTTATGCGTTTAGG 57.393 39.130 0.00 0.00 0.00 2.69
2543 5912 3.626977 TGCAAACACTCACTTTTATGCG 58.373 40.909 0.00 0.00 35.40 4.73
2544 5913 4.610945 ACTGCAAACACTCACTTTTATGC 58.389 39.130 0.00 0.00 0.00 3.14
2545 5914 5.820131 TGACTGCAAACACTCACTTTTATG 58.180 37.500 0.00 0.00 0.00 1.90
2582 5951 8.421249 TTGGAAATATTGTCCTCAACTGAATT 57.579 30.769 14.07 0.00 36.33 2.17
2589 5958 5.656416 GTCCCATTGGAAATATTGTCCTCAA 59.344 40.000 3.62 5.47 44.07 3.02
2591 5960 5.200483 TGTCCCATTGGAAATATTGTCCTC 58.800 41.667 3.62 0.00 44.07 3.71
2592 5961 5.044179 TCTGTCCCATTGGAAATATTGTCCT 60.044 40.000 3.62 0.00 44.07 3.85
2594 5963 6.564328 GTTCTGTCCCATTGGAAATATTGTC 58.436 40.000 3.62 0.00 44.07 3.18
2603 5972 4.408921 AGAATATCGTTCTGTCCCATTGGA 59.591 41.667 3.62 0.00 38.75 3.53
2607 5976 3.389329 AGCAGAATATCGTTCTGTCCCAT 59.611 43.478 16.45 0.04 45.66 4.00
2615 5984 3.247173 CAGGCAGAAGCAGAATATCGTTC 59.753 47.826 0.00 0.00 44.61 3.95
2618 5987 2.831333 ACAGGCAGAAGCAGAATATCG 58.169 47.619 0.00 0.00 44.61 2.92
2619 5988 7.158021 AGTATTACAGGCAGAAGCAGAATATC 58.842 38.462 0.00 0.00 44.61 1.63
2620 5989 7.072263 AGTATTACAGGCAGAAGCAGAATAT 57.928 36.000 0.00 0.00 44.61 1.28
2709 6090 2.313317 ACACTCGTTTCTGTCCCACTA 58.687 47.619 0.00 0.00 0.00 2.74
2719 6100 3.398954 TGAACTGCAAACACTCGTTTC 57.601 42.857 0.00 0.00 43.57 2.78
2720 6101 4.574828 ACTATGAACTGCAAACACTCGTTT 59.425 37.500 0.00 0.00 46.38 3.60
2723 6104 3.181540 CGACTATGAACTGCAAACACTCG 60.182 47.826 0.00 0.00 0.00 4.18
2727 6108 2.488952 TGCGACTATGAACTGCAAACA 58.511 42.857 0.00 0.00 31.69 2.83
2736 6117 5.123661 TGAATTTGAAGCATGCGACTATGAA 59.876 36.000 13.01 2.88 0.00 2.57
2738 6119 4.912214 TGAATTTGAAGCATGCGACTATG 58.088 39.130 13.01 0.00 0.00 2.23
2739 6120 4.637534 ACTGAATTTGAAGCATGCGACTAT 59.362 37.500 13.01 0.79 0.00 2.12
2744 6125 3.567530 TCAACTGAATTTGAAGCATGCG 58.432 40.909 13.01 0.00 32.42 4.73
2749 6130 8.976986 ATATTGTTCTCAACTGAATTTGAAGC 57.023 30.769 0.00 0.00 35.07 3.86
2752 6133 7.814107 GGCAATATTGTTCTCAACTGAATTTGA 59.186 33.333 16.61 0.00 36.33 2.69
2760 6141 6.594788 ACATTGGCAATATTGTTCTCAACT 57.405 33.333 13.23 4.19 36.33 3.16
2761 6142 6.646240 ACAACATTGGCAATATTGTTCTCAAC 59.354 34.615 26.53 0.00 36.33 3.18
2769 6150 5.172934 AGCAGAACAACATTGGCAATATTG 58.827 37.500 25.29 25.29 0.00 1.90
2770 6151 5.410355 AGCAGAACAACATTGGCAATATT 57.590 34.783 13.23 4.91 0.00 1.28
2772 6153 4.523943 AGAAGCAGAACAACATTGGCAATA 59.476 37.500 13.23 0.00 0.00 1.90
2773 6154 3.322828 AGAAGCAGAACAACATTGGCAAT 59.677 39.130 6.96 6.96 0.00 3.56
2774 6155 2.694628 AGAAGCAGAACAACATTGGCAA 59.305 40.909 0.68 0.68 0.00 4.52
2776 6157 2.669364 CAGAAGCAGAACAACATTGGC 58.331 47.619 0.00 0.00 0.00 4.52
2777 6158 2.608752 GGCAGAAGCAGAACAACATTGG 60.609 50.000 0.00 0.00 44.61 3.16
2778 6159 2.608752 GGGCAGAAGCAGAACAACATTG 60.609 50.000 0.00 0.00 44.61 2.82
2779 6160 1.615392 GGGCAGAAGCAGAACAACATT 59.385 47.619 0.00 0.00 44.61 2.71
2780 6161 1.251251 GGGCAGAAGCAGAACAACAT 58.749 50.000 0.00 0.00 44.61 2.71
2781 6162 0.106769 TGGGCAGAAGCAGAACAACA 60.107 50.000 0.00 0.00 44.61 3.33
2782 6163 1.068055 CATGGGCAGAAGCAGAACAAC 60.068 52.381 0.00 0.00 44.61 3.32
2783 6164 1.250328 CATGGGCAGAAGCAGAACAA 58.750 50.000 0.00 0.00 44.61 2.83
2784 6165 0.111061 ACATGGGCAGAAGCAGAACA 59.889 50.000 0.00 0.00 44.61 3.18
2785 6166 0.524862 CACATGGGCAGAAGCAGAAC 59.475 55.000 0.00 0.00 44.61 3.01
2786 6167 0.401356 TCACATGGGCAGAAGCAGAA 59.599 50.000 0.00 0.00 44.61 3.02
2787 6168 0.622136 ATCACATGGGCAGAAGCAGA 59.378 50.000 0.00 0.00 44.61 4.26
2788 6169 1.945394 GTATCACATGGGCAGAAGCAG 59.055 52.381 0.00 0.00 44.61 4.24
2789 6170 1.561076 AGTATCACATGGGCAGAAGCA 59.439 47.619 0.00 0.00 44.61 3.91
2790 6171 2.338577 AGTATCACATGGGCAGAAGC 57.661 50.000 0.00 0.00 41.10 3.86
2791 6172 4.965814 ACATAGTATCACATGGGCAGAAG 58.034 43.478 0.00 0.00 0.00 2.85
2792 6173 6.686484 ATACATAGTATCACATGGGCAGAA 57.314 37.500 0.00 0.00 0.00 3.02
2793 6174 6.954102 AGTATACATAGTATCACATGGGCAGA 59.046 38.462 5.50 0.00 0.00 4.26
2794 6175 7.175347 AGTATACATAGTATCACATGGGCAG 57.825 40.000 5.50 0.00 0.00 4.85
2795 6176 8.838649 ATAGTATACATAGTATCACATGGGCA 57.161 34.615 5.50 0.00 0.00 5.36
2800 6181 9.589461 GGGGCTATAGTATACATAGTATCACAT 57.411 37.037 5.50 0.00 32.62 3.21
2801 6182 8.788799 AGGGGCTATAGTATACATAGTATCACA 58.211 37.037 5.50 0.00 32.62 3.58
2802 6183 9.643735 AAGGGGCTATAGTATACATAGTATCAC 57.356 37.037 5.50 6.27 32.62 3.06
2810 6191 9.373450 CAGATCATAAGGGGCTATAGTATACAT 57.627 37.037 5.50 0.00 0.00 2.29
2811 6192 8.344546 ACAGATCATAAGGGGCTATAGTATACA 58.655 37.037 5.50 0.00 0.00 2.29
2812 6193 8.770010 ACAGATCATAAGGGGCTATAGTATAC 57.230 38.462 0.84 0.00 0.00 1.47
2813 6194 9.422681 GAACAGATCATAAGGGGCTATAGTATA 57.577 37.037 0.84 0.00 0.00 1.47
2814 6195 7.345914 GGAACAGATCATAAGGGGCTATAGTAT 59.654 40.741 0.84 0.00 0.00 2.12
2815 6196 6.668283 GGAACAGATCATAAGGGGCTATAGTA 59.332 42.308 0.84 0.00 0.00 1.82
2816 6197 5.485708 GGAACAGATCATAAGGGGCTATAGT 59.514 44.000 0.84 0.00 0.00 2.12
2817 6198 5.485353 TGGAACAGATCATAAGGGGCTATAG 59.515 44.000 0.00 0.00 0.00 1.31
2818 6199 5.248477 GTGGAACAGATCATAAGGGGCTATA 59.752 44.000 0.00 0.00 41.80 1.31
2819 6200 4.042187 GTGGAACAGATCATAAGGGGCTAT 59.958 45.833 0.00 0.00 41.80 2.97
2820 6201 3.391296 GTGGAACAGATCATAAGGGGCTA 59.609 47.826 0.00 0.00 41.80 3.93
2821 6202 2.173569 GTGGAACAGATCATAAGGGGCT 59.826 50.000 0.00 0.00 41.80 5.19
2822 6203 2.173569 AGTGGAACAGATCATAAGGGGC 59.826 50.000 0.00 0.00 41.80 5.80
2823 6204 4.510167 AAGTGGAACAGATCATAAGGGG 57.490 45.455 0.00 0.00 41.80 4.79
2824 6205 4.096984 GCAAAGTGGAACAGATCATAAGGG 59.903 45.833 0.00 0.00 41.80 3.95
2825 6206 4.946157 AGCAAAGTGGAACAGATCATAAGG 59.054 41.667 0.00 0.00 41.80 2.69
2826 6207 5.645067 TGAGCAAAGTGGAACAGATCATAAG 59.355 40.000 0.00 0.00 41.80 1.73
2827 6208 5.559770 TGAGCAAAGTGGAACAGATCATAA 58.440 37.500 0.00 0.00 41.80 1.90
2828 6209 5.164620 TGAGCAAAGTGGAACAGATCATA 57.835 39.130 0.00 0.00 41.80 2.15
2829 6210 4.025040 TGAGCAAAGTGGAACAGATCAT 57.975 40.909 0.00 0.00 41.80 2.45
2830 6211 3.490439 TGAGCAAAGTGGAACAGATCA 57.510 42.857 0.00 0.00 41.80 2.92
2831 6212 7.976135 ATATATGAGCAAAGTGGAACAGATC 57.024 36.000 0.00 0.00 41.80 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.