Multiple sequence alignment - TraesCS7D01G397800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G397800 chr7D 100.000 2374 0 0 1 2374 512749992 512747619 0.000000e+00 4385.0
1 TraesCS7D01G397800 chr7D 100.000 1769 0 0 2659 4427 512747334 512745566 0.000000e+00 3267.0
2 TraesCS7D01G397800 chr7D 89.702 369 37 1 2921 3288 208223488 208223120 1.860000e-128 470.0
3 TraesCS7D01G397800 chr7B 94.523 2392 72 25 1 2374 544483779 544481429 0.000000e+00 3637.0
4 TraesCS7D01G397800 chr7B 97.899 1618 33 1 2811 4427 544481163 544479546 0.000000e+00 2798.0
5 TraesCS7D01G397800 chr7B 90.489 368 34 1 2921 3287 193310835 193311202 6.660000e-133 484.0
6 TraesCS7D01G397800 chr7B 100.000 154 0 0 2659 2812 544481361 544481208 7.250000e-73 285.0
7 TraesCS7D01G397800 chr7B 97.222 36 0 1 3916 3950 452959827 452959862 4.780000e-05 60.2
8 TraesCS7D01G397800 chr7A 95.460 1630 58 8 2811 4427 585356992 585355366 0.000000e+00 2586.0
9 TraesCS7D01G397800 chr7A 93.253 1586 54 19 800 2374 585358810 585357267 0.000000e+00 2287.0
10 TraesCS7D01G397800 chr7A 93.287 432 21 5 278 706 585359753 585359327 8.080000e-177 630.0
11 TraesCS7D01G397800 chr7A 89.973 369 36 1 2921 3288 221267308 221266940 4.010000e-130 475.0
12 TraesCS7D01G397800 chr7A 85.461 282 25 8 1 282 585360156 585359891 3.370000e-71 279.0
13 TraesCS7D01G397800 chr7A 96.753 154 5 0 2659 2812 585357190 585357037 1.580000e-64 257.0
14 TraesCS7D01G397800 chr7A 88.636 44 5 0 8 51 723161178 723161135 2.000000e-03 54.7
15 TraesCS7D01G397800 chr5D 87.037 432 48 5 2922 3352 374391716 374392140 8.610000e-132 481.0
16 TraesCS7D01G397800 chr5D 86.932 352 46 0 2922 3273 279155689 279155338 3.210000e-106 396.0
17 TraesCS7D01G397800 chr5B 88.308 402 45 2 2922 3322 446996505 446996905 8.610000e-132 481.0
18 TraesCS7D01G397800 chr5A 91.420 338 29 0 2922 3259 476225335 476225672 8.670000e-127 464.0
19 TraesCS7D01G397800 chr1A 85.897 78 4 6 287 359 431072473 431072548 4.750000e-10 76.8
20 TraesCS7D01G397800 chr3D 95.349 43 2 0 3905 3947 608408279 608408321 7.950000e-08 69.4
21 TraesCS7D01G397800 chr6D 97.143 35 1 0 3856 3890 450527150 450527184 4.780000e-05 60.2
22 TraesCS7D01G397800 chr6D 100.000 29 0 0 7 35 110157900 110157928 2.000000e-03 54.7
23 TraesCS7D01G397800 chr6B 88.636 44 5 0 8 51 300964323 300964366 2.000000e-03 54.7
24 TraesCS7D01G397800 chr2A 88.636 44 5 0 8 51 42481258 42481301 2.000000e-03 54.7
25 TraesCS7D01G397800 chr2A 88.636 44 5 0 8 51 757962687 757962644 2.000000e-03 54.7
26 TraesCS7D01G397800 chr6A 88.372 43 5 0 8 50 103848638 103848596 8.000000e-03 52.8
27 TraesCS7D01G397800 chr4D 94.286 35 1 1 3856 3890 467443691 467443724 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G397800 chr7D 512745566 512749992 4426 True 3826.0 4385 100.0000 1 4427 2 chr7D.!!$R2 4426
1 TraesCS7D01G397800 chr7B 544479546 544483779 4233 True 2240.0 3637 97.4740 1 4427 3 chr7B.!!$R1 4426
2 TraesCS7D01G397800 chr7A 585355366 585360156 4790 True 1207.8 2586 92.8428 1 4427 5 chr7A.!!$R3 4426

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 96 0.028505 GCGAAGTTGCATGCATCGAT 59.971 50.0 34.41 22.36 35.65 3.59 F
195 197 0.037590 AAGCATTGACGGCCCTAACA 59.962 50.0 0.00 0.00 0.00 2.41 F
1563 2133 0.179004 TCATTGGTCCCACGCAGTTT 60.179 50.0 0.00 0.00 41.61 2.66 F
2004 2589 0.195096 AGGGTAGTGGGAACTGGGAA 59.805 55.0 0.00 0.00 0.00 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2003 2588 0.415429 TGCCCTCTCTCTTCCCTCTT 59.585 55.0 0.00 0.00 0.00 2.85 R
2004 2589 0.641601 ATGCCCTCTCTCTTCCCTCT 59.358 55.0 0.00 0.00 0.00 3.69 R
2851 3499 5.012148 AGACAGAGTTGTAATGGCTTACACT 59.988 40.0 8.43 8.97 45.25 3.55 R
3854 4508 2.971901 ATTTTGGGACGAAGGGAGTT 57.028 45.0 0.00 0.00 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 93 0.248377 GAGGCGAAGTTGCATGCATC 60.248 55.000 23.37 20.93 36.28 3.91
94 96 0.028505 GCGAAGTTGCATGCATCGAT 59.971 50.000 34.41 22.36 35.65 3.59
95 97 1.738432 CGAAGTTGCATGCATCGATG 58.262 50.000 29.28 21.27 35.65 3.84
107 109 0.514255 CATCGATGCAAGGTATGGCG 59.486 55.000 13.37 0.00 0.00 5.69
108 110 0.392706 ATCGATGCAAGGTATGGCGA 59.607 50.000 0.00 0.00 0.00 5.54
109 111 0.176910 TCGATGCAAGGTATGGCGAA 59.823 50.000 0.00 0.00 0.00 4.70
110 112 1.202639 TCGATGCAAGGTATGGCGAAT 60.203 47.619 0.00 0.00 0.00 3.34
111 113 1.069703 CGATGCAAGGTATGGCGAATG 60.070 52.381 0.00 0.00 0.00 2.67
112 114 0.670162 ATGCAAGGTATGGCGAATGC 59.330 50.000 0.00 0.00 41.71 3.56
113 115 0.679321 TGCAAGGTATGGCGAATGCA 60.679 50.000 0.00 0.00 45.35 3.96
114 116 0.455410 GCAAGGTATGGCGAATGCAA 59.545 50.000 0.00 0.00 45.35 4.08
115 117 1.067516 GCAAGGTATGGCGAATGCAAT 59.932 47.619 0.00 0.00 45.35 3.56
116 118 2.734670 CAAGGTATGGCGAATGCAATG 58.265 47.619 0.00 0.00 45.35 2.82
117 119 2.057137 AGGTATGGCGAATGCAATGT 57.943 45.000 0.00 0.00 45.35 2.71
118 120 1.677576 AGGTATGGCGAATGCAATGTG 59.322 47.619 0.00 0.00 45.35 3.21
154 156 5.182001 GCTCAACACTGTGATGTTCCTATTT 59.818 40.000 15.86 0.00 40.89 1.40
160 162 4.695455 ACTGTGATGTTCCTATTTTGGTCG 59.305 41.667 0.00 0.00 0.00 4.79
168 170 2.827322 TCCTATTTTGGTCGAGTCGGAA 59.173 45.455 13.54 0.52 0.00 4.30
173 175 1.263356 TTGGTCGAGTCGGAATCCTT 58.737 50.000 13.54 0.00 0.00 3.36
177 179 1.203994 GTCGAGTCGGAATCCTTGGAA 59.796 52.381 13.54 0.00 0.00 3.53
195 197 0.037590 AAGCATTGACGGCCCTAACA 59.962 50.000 0.00 0.00 0.00 2.41
203 205 1.079127 CGGCCCTAACAGGTGACAG 60.079 63.158 0.00 0.00 31.93 3.51
234 237 5.461737 CCGCAAAAGAAAAAGATTAAGCACA 59.538 36.000 0.00 0.00 0.00 4.57
250 253 7.979444 TTAAGCACAAGCAAAATAGAGTAGT 57.021 32.000 0.00 0.00 45.49 2.73
255 258 8.043710 AGCACAAGCAAAATAGAGTAGTAGATT 58.956 33.333 0.00 0.00 45.49 2.40
278 281 4.021280 TGGTTGGCTTTGTATAGTCGTACA 60.021 41.667 0.00 0.00 32.99 2.90
297 441 3.983741 ACAAAGAGTATGGCTAGATCGC 58.016 45.455 0.00 0.00 0.00 4.58
298 442 3.384789 ACAAAGAGTATGGCTAGATCGCA 59.615 43.478 0.00 0.00 0.00 5.10
333 478 1.859302 AGGAACTCTTGCCTCTCGAT 58.141 50.000 0.00 0.00 0.00 3.59
339 484 4.744795 ACTCTTGCCTCTCGATTGTAAT 57.255 40.909 0.00 0.00 0.00 1.89
518 665 0.616891 GGTTCCCATACTTCCACGGT 59.383 55.000 0.00 0.00 0.00 4.83
526 673 7.235935 TCCCATACTTCCACGGTAATAATAG 57.764 40.000 0.00 0.00 0.00 1.73
675 822 4.899502 TCCAAACCTTTTGCTTTTGTTCA 58.100 34.783 0.00 0.00 0.00 3.18
676 823 5.495640 TCCAAACCTTTTGCTTTTGTTCAT 58.504 33.333 0.00 0.00 0.00 2.57
857 1427 4.824537 CCTTTATCTCCGTCTCTCTCATCA 59.175 45.833 0.00 0.00 0.00 3.07
861 1431 2.503765 TCTCCGTCTCTCTCATCACTCT 59.496 50.000 0.00 0.00 0.00 3.24
1097 1667 0.909610 TTCCCCAGCTACACCTCCTG 60.910 60.000 0.00 0.00 0.00 3.86
1198 1768 0.468958 CCACAACCCCCATCAACACA 60.469 55.000 0.00 0.00 0.00 3.72
1305 1875 4.175337 GCCCTGCACATCGGCCTA 62.175 66.667 0.00 0.00 36.63 3.93
1336 1906 2.271173 CCTCTGATGCAGCAGCCA 59.729 61.111 26.87 10.16 41.13 4.75
1454 2024 0.692419 GGAGAGGAGGAGGATGGCAA 60.692 60.000 0.00 0.00 0.00 4.52
1467 2037 3.737172 GGCAACACGATGGCGCTT 61.737 61.111 7.64 0.00 42.48 4.68
1563 2133 0.179004 TCATTGGTCCCACGCAGTTT 60.179 50.000 0.00 0.00 41.61 2.66
1618 2188 0.599558 CAACAACATGCAGGTGAGGG 59.400 55.000 4.03 0.00 36.95 4.30
1693 2263 3.757947 TCCTGTCTGGTCTTGATAGGA 57.242 47.619 5.35 5.35 45.36 2.94
1696 2266 3.370104 CTGTCTGGTCTTGATAGGAGGT 58.630 50.000 0.00 0.00 0.00 3.85
1712 2282 8.303876 TGATAGGAGGTTTTTAGTTGATTTTGC 58.696 33.333 0.00 0.00 0.00 3.68
1832 2402 0.530870 GCGGTGGATCTAGGAGCAAC 60.531 60.000 0.00 0.00 0.00 4.17
1855 2425 1.298859 CGCTGCTTCTTGTACCACCC 61.299 60.000 0.00 0.00 0.00 4.61
1856 2426 0.960861 GCTGCTTCTTGTACCACCCC 60.961 60.000 0.00 0.00 0.00 4.95
1867 2437 0.927767 TACCACCCCTCTCTCTCTCC 59.072 60.000 0.00 0.00 0.00 3.71
1882 2452 3.713764 CTCTCTCCCTCTCTCTCTCTCTT 59.286 52.174 0.00 0.00 0.00 2.85
1892 2462 3.270027 TCTCTCTCTCTTTCTCTCGCTG 58.730 50.000 0.00 0.00 0.00 5.18
1893 2463 3.055458 TCTCTCTCTCTTTCTCTCGCTGA 60.055 47.826 0.00 0.00 0.00 4.26
1895 2465 1.735018 TCTCTCTTTCTCTCGCTGACG 59.265 52.381 0.00 0.00 42.01 4.35
1896 2466 1.466950 CTCTCTTTCTCTCGCTGACGT 59.533 52.381 0.00 0.00 41.18 4.34
1897 2467 2.673862 CTCTCTTTCTCTCGCTGACGTA 59.326 50.000 0.00 0.00 41.18 3.57
1898 2468 3.271729 TCTCTTTCTCTCGCTGACGTAT 58.728 45.455 0.00 0.00 41.18 3.06
1899 2469 3.310227 TCTCTTTCTCTCGCTGACGTATC 59.690 47.826 0.00 0.00 41.18 2.24
1900 2470 3.271729 TCTTTCTCTCGCTGACGTATCT 58.728 45.455 0.00 0.00 41.18 1.98
1998 2583 3.306379 CGGGAGGGTAGTGGGAAC 58.694 66.667 0.00 0.00 0.00 3.62
1999 2584 1.305887 CGGGAGGGTAGTGGGAACT 60.306 63.158 0.00 0.00 0.00 3.01
2000 2585 1.614241 CGGGAGGGTAGTGGGAACTG 61.614 65.000 0.00 0.00 0.00 3.16
2001 2586 1.272554 GGGAGGGTAGTGGGAACTGG 61.273 65.000 0.00 0.00 0.00 4.00
2002 2587 1.272554 GGAGGGTAGTGGGAACTGGG 61.273 65.000 0.00 0.00 0.00 4.45
2003 2588 0.252558 GAGGGTAGTGGGAACTGGGA 60.253 60.000 0.00 0.00 0.00 4.37
2004 2589 0.195096 AGGGTAGTGGGAACTGGGAA 59.805 55.000 0.00 0.00 0.00 3.97
2141 2727 4.517287 CGCTTGTTTTGCCTTTTCAATTC 58.483 39.130 0.00 0.00 0.00 2.17
2338 2940 2.752807 AAACCCCACCACGAGCAGT 61.753 57.895 0.00 0.00 0.00 4.40
2339 2941 1.412453 AAACCCCACCACGAGCAGTA 61.412 55.000 0.00 0.00 0.00 2.74
2340 2942 2.108278 AACCCCACCACGAGCAGTAC 62.108 60.000 0.00 0.00 0.00 2.73
2820 3468 1.153289 CGGTAGCTCCAGCAAGCAT 60.153 57.895 0.48 0.00 45.00 3.79
2851 3499 2.302157 TCCAATTTGTCCATGCATGCAA 59.698 40.909 26.68 17.13 0.00 4.08
2895 3543 4.398988 GTCTGTCTGTCTCATGTCTGATCT 59.601 45.833 0.00 0.00 0.00 2.75
2911 3559 4.347360 TGATCTATCAGTTGCCATGGAG 57.653 45.455 18.40 0.46 32.11 3.86
3363 4011 0.036294 TTGACCACACCGTCAACACA 60.036 50.000 0.17 0.00 45.49 3.72
3615 4263 7.003648 GCGTTTTAATTGTGAAAGAAAGATGC 58.996 34.615 0.00 0.00 0.00 3.91
3680 4328 7.228507 GGTGCATGTATGGTTATGACTTATGAA 59.771 37.037 0.00 0.00 0.00 2.57
3854 4508 4.581824 CGGGCCTACTGACTTATTACTACA 59.418 45.833 0.84 0.00 0.00 2.74
3862 4516 7.793948 ACTGACTTATTACTACAACTCCCTT 57.206 36.000 0.00 0.00 0.00 3.95
3985 4641 6.304356 TGACATCTTTTGTGTTCATCTGAC 57.696 37.500 0.00 0.00 39.18 3.51
4352 5014 8.306761 GTTGAAATGTCCTCAATAGAAAATGGT 58.693 33.333 0.00 0.00 35.36 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 93 1.069703 CATTCGCCATACCTTGCATCG 60.070 52.381 0.00 0.00 0.00 3.84
94 96 0.679321 TGCATTCGCCATACCTTGCA 60.679 50.000 0.00 0.00 37.73 4.08
95 97 0.455410 TTGCATTCGCCATACCTTGC 59.545 50.000 0.00 0.00 37.32 4.01
96 98 2.099592 ACATTGCATTCGCCATACCTTG 59.900 45.455 0.00 0.00 37.32 3.61
98 100 1.677576 CACATTGCATTCGCCATACCT 59.322 47.619 0.00 0.00 37.32 3.08
100 102 2.453080 CACACATTGCATTCGCCATAC 58.547 47.619 0.00 0.00 37.32 2.39
101 103 1.404748 CCACACATTGCATTCGCCATA 59.595 47.619 0.00 0.00 37.32 2.74
102 104 0.173935 CCACACATTGCATTCGCCAT 59.826 50.000 0.00 0.00 37.32 4.40
103 105 1.585517 CCACACATTGCATTCGCCA 59.414 52.632 0.00 0.00 37.32 5.69
104 106 1.806758 GCCACACATTGCATTCGCC 60.807 57.895 0.00 0.00 37.32 5.54
105 107 2.153945 CGCCACACATTGCATTCGC 61.154 57.895 0.00 0.00 39.24 4.70
106 108 2.153945 GCGCCACACATTGCATTCG 61.154 57.895 0.00 0.00 0.00 3.34
107 109 1.074319 CAGCGCCACACATTGCATTC 61.074 55.000 2.29 0.00 0.00 2.67
108 110 1.080366 CAGCGCCACACATTGCATT 60.080 52.632 2.29 0.00 0.00 3.56
109 111 2.569657 CAGCGCCACACATTGCAT 59.430 55.556 2.29 0.00 0.00 3.96
110 112 3.672447 CCAGCGCCACACATTGCA 61.672 61.111 2.29 0.00 0.00 4.08
112 114 3.620300 CTGCCAGCGCCACACATTG 62.620 63.158 2.29 0.00 0.00 2.82
113 115 3.367743 CTGCCAGCGCCACACATT 61.368 61.111 2.29 0.00 0.00 2.71
154 156 1.067142 CAAGGATTCCGACTCGACCAA 60.067 52.381 0.00 0.00 0.00 3.67
160 162 1.066143 TGCTTCCAAGGATTCCGACTC 60.066 52.381 0.00 0.00 0.00 3.36
168 170 1.755179 CCGTCAATGCTTCCAAGGAT 58.245 50.000 0.00 0.00 38.86 3.24
173 175 1.558167 TAGGGCCGTCAATGCTTCCA 61.558 55.000 0.00 0.00 0.00 3.53
177 179 0.392998 CTGTTAGGGCCGTCAATGCT 60.393 55.000 0.00 0.00 0.00 3.79
203 205 2.217429 TTTTCTTTTGCGGGACAAGC 57.783 45.000 0.00 0.00 40.06 4.01
234 237 9.167311 CAACCAATCTACTACTCTATTTTGCTT 57.833 33.333 0.00 0.00 0.00 3.91
250 253 6.046593 CGACTATACAAAGCCAACCAATCTA 58.953 40.000 0.00 0.00 0.00 1.98
255 258 3.688694 ACGACTATACAAAGCCAACCA 57.311 42.857 0.00 0.00 0.00 3.67
278 281 3.891977 TCTGCGATCTAGCCATACTCTTT 59.108 43.478 0.00 0.00 36.02 2.52
297 441 2.651455 TCCTCTATACACGGTGGTCTG 58.349 52.381 13.48 0.46 0.00 3.51
298 442 3.022406 GTTCCTCTATACACGGTGGTCT 58.978 50.000 13.48 0.00 0.00 3.85
339 484 9.929180 CTCGAGTTTTATTCCATATGAATAGGA 57.071 33.333 3.62 0.00 44.61 2.94
382 529 9.310449 AGTATATCGAAACAGTTACCCTATGAT 57.690 33.333 0.00 0.00 0.00 2.45
446 593 4.457949 ACAGACGAAAATTTATGTCACCCC 59.542 41.667 19.19 0.15 33.83 4.95
518 665 9.460413 TTGAATTCTCTCCTTCCCCTATTATTA 57.540 33.333 7.05 0.00 0.00 0.98
526 673 2.240921 AGCTTGAATTCTCTCCTTCCCC 59.759 50.000 7.05 0.00 0.00 4.81
675 822 5.336134 GGAAAAGTTTTGGTGGTGCGTATAT 60.336 40.000 5.36 0.00 0.00 0.86
676 823 4.023021 GGAAAAGTTTTGGTGGTGCGTATA 60.023 41.667 5.36 0.00 0.00 1.47
857 1427 3.852578 AGAAGAAGAGAGGGAGAGAGAGT 59.147 47.826 0.00 0.00 0.00 3.24
861 1431 4.946160 AGAAGAAGAAGAGAGGGAGAGA 57.054 45.455 0.00 0.00 0.00 3.10
1097 1667 4.035102 GAGGTGGGTGGTGGAGGC 62.035 72.222 0.00 0.00 0.00 4.70
1315 1885 4.119363 TGCTGCATCAGAGGGGCC 62.119 66.667 0.00 0.00 32.44 5.80
1563 2133 2.284331 TAGCAGACGGGGCAGGAA 60.284 61.111 0.00 0.00 0.00 3.36
1618 2188 2.924421 AGGCAATTCGAAGAAGGATCC 58.076 47.619 2.48 2.48 45.90 3.36
1624 2194 2.704725 GCACAAGGCAATTCGAAGAA 57.295 45.000 3.35 0.00 42.69 2.52
1693 2263 7.334858 TCCAAAGCAAAATCAACTAAAAACCT 58.665 30.769 0.00 0.00 0.00 3.50
1696 2266 8.729805 ACATCCAAAGCAAAATCAACTAAAAA 57.270 26.923 0.00 0.00 0.00 1.94
1712 2282 5.410067 AGTTCACAACACAAACATCCAAAG 58.590 37.500 0.00 0.00 0.00 2.77
1781 2351 1.691196 CACAGGACAAAGGAAGCCAA 58.309 50.000 0.00 0.00 0.00 4.52
1832 2402 1.639298 GGTACAAGAAGCAGCGGCAG 61.639 60.000 12.44 0.00 44.61 4.85
1855 2425 2.370189 GAGAGAGAGGGAGAGAGAGAGG 59.630 59.091 0.00 0.00 0.00 3.69
1856 2426 3.312890 AGAGAGAGAGGGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
1867 2437 4.122776 CGAGAGAAAGAGAGAGAGAGAGG 58.877 52.174 0.00 0.00 0.00 3.69
1882 2452 3.190744 ACAAAGATACGTCAGCGAGAGAA 59.809 43.478 0.00 0.00 42.00 2.87
1892 2462 7.117241 TCAGTCAAATCAACAAAGATACGTC 57.883 36.000 0.00 0.00 0.00 4.34
1893 2463 7.352739 GTTCAGTCAAATCAACAAAGATACGT 58.647 34.615 0.00 0.00 0.00 3.57
1895 2465 6.797033 CGGTTCAGTCAAATCAACAAAGATAC 59.203 38.462 0.00 0.00 0.00 2.24
1896 2466 6.072728 CCGGTTCAGTCAAATCAACAAAGATA 60.073 38.462 0.00 0.00 0.00 1.98
1897 2467 5.278463 CCGGTTCAGTCAAATCAACAAAGAT 60.278 40.000 0.00 0.00 0.00 2.40
1898 2468 4.036262 CCGGTTCAGTCAAATCAACAAAGA 59.964 41.667 0.00 0.00 0.00 2.52
1899 2469 4.290155 CCGGTTCAGTCAAATCAACAAAG 58.710 43.478 0.00 0.00 0.00 2.77
1900 2470 3.067461 CCCGGTTCAGTCAAATCAACAAA 59.933 43.478 0.00 0.00 0.00 2.83
1998 2583 2.387757 CTCTCTCTTCCCTCTTCCCAG 58.612 57.143 0.00 0.00 0.00 4.45
1999 2584 1.007721 CCTCTCTCTTCCCTCTTCCCA 59.992 57.143 0.00 0.00 0.00 4.37
2000 2585 1.691163 CCCTCTCTCTTCCCTCTTCCC 60.691 61.905 0.00 0.00 0.00 3.97
2001 2586 1.788229 CCCTCTCTCTTCCCTCTTCC 58.212 60.000 0.00 0.00 0.00 3.46
2002 2587 1.119684 GCCCTCTCTCTTCCCTCTTC 58.880 60.000 0.00 0.00 0.00 2.87
2003 2588 0.415429 TGCCCTCTCTCTTCCCTCTT 59.585 55.000 0.00 0.00 0.00 2.85
2004 2589 0.641601 ATGCCCTCTCTCTTCCCTCT 59.358 55.000 0.00 0.00 0.00 3.69
2097 2683 3.403038 CAAACTCCAAGATCGGTCAGTT 58.597 45.455 0.00 0.00 0.00 3.16
2291 2882 2.509964 AGAAGGAGAGAGAGGAGGAGTC 59.490 54.545 0.00 0.00 0.00 3.36
2292 2883 2.509964 GAGAAGGAGAGAGAGGAGGAGT 59.490 54.545 0.00 0.00 0.00 3.85
2293 2884 2.780010 AGAGAAGGAGAGAGAGGAGGAG 59.220 54.545 0.00 0.00 0.00 3.69
2851 3499 5.012148 AGACAGAGTTGTAATGGCTTACACT 59.988 40.000 8.43 8.97 45.25 3.55
3615 4263 9.350357 GATTAATCCAGCTGCAAATGTATAATG 57.650 33.333 8.66 0.00 0.00 1.90
3680 4328 8.697507 AACAATTAGAAATTCACTCACCTCTT 57.302 30.769 0.00 0.00 0.00 2.85
3842 4496 6.127507 GGACGAAGGGAGTTGTAGTAATAAGT 60.128 42.308 0.00 0.00 0.00 2.24
3854 4508 2.971901 ATTTTGGGACGAAGGGAGTT 57.028 45.000 0.00 0.00 0.00 3.01
3862 4516 3.389925 ACGACACTTATTTTGGGACGA 57.610 42.857 0.00 0.00 0.00 4.20
4324 4985 9.132521 CATTTTCTATTGAGGACATTTCAACAC 57.867 33.333 0.00 0.00 37.38 3.32
4334 4995 5.643379 TGCAACCATTTTCTATTGAGGAC 57.357 39.130 0.00 0.00 0.00 3.85
4352 5014 2.014128 GGGCGAATACTAGCTTTGCAA 58.986 47.619 15.94 0.00 35.15 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.