Multiple sequence alignment - TraesCS7D01G397600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G397600 chr7D 100.000 7668 0 0 1 7668 512273555 512281222 0.000000e+00 14161
1 TraesCS7D01G397600 chr7D 97.911 1149 20 2 2252 3399 50709045 50710190 0.000000e+00 1986
2 TraesCS7D01G397600 chr7D 87.262 526 57 9 2249 2769 97955948 97955428 6.630000e-165 592
3 TraesCS7D01G397600 chr7D 81.679 262 34 8 3909 4164 112068128 112067875 1.010000e-48 206
4 TraesCS7D01G397600 chr7B 93.977 4217 198 23 3478 7668 544134776 544138962 0.000000e+00 6329
5 TraesCS7D01G397600 chr7B 90.321 2025 84 46 1 2004 544132479 544134412 0.000000e+00 2551
6 TraesCS7D01G397600 chr7B 87.288 118 8 2 2153 2263 544134558 544134675 2.250000e-25 128
7 TraesCS7D01G397600 chr7A 92.261 4329 240 48 3381 7668 585061615 585065889 0.000000e+00 6050
8 TraesCS7D01G397600 chr7A 92.813 1614 70 19 550 2138 585059856 585061448 0.000000e+00 2296
9 TraesCS7D01G397600 chr7A 89.604 404 25 9 17 411 585059076 585059471 1.490000e-136 497
10 TraesCS7D01G397600 chr7A 82.922 486 58 15 2922 3401 194333195 194332729 1.540000e-111 414
11 TraesCS7D01G397600 chr7A 79.572 514 74 18 3630 4139 116895259 116894773 9.530000e-89 339
12 TraesCS7D01G397600 chr7A 95.882 170 6 1 2091 2260 585061461 585061629 2.730000e-69 274
13 TraesCS7D01G397600 chr5D 98.872 1152 10 3 2251 3399 546004384 546005535 0.000000e+00 2052
14 TraesCS7D01G397600 chr5D 98.609 1150 15 1 2250 3398 129976099 129974950 0.000000e+00 2034
15 TraesCS7D01G397600 chr5D 92.157 153 12 0 2766 2918 378126839 378126991 4.660000e-52 217
16 TraesCS7D01G397600 chr2D 98.438 1152 13 4 2252 3398 450876628 450875477 0.000000e+00 2023
17 TraesCS7D01G397600 chr2D 97.917 1152 19 2 2252 3398 35550855 35552006 0.000000e+00 1989
18 TraesCS7D01G397600 chr1B 88.593 526 54 6 2249 2769 14132210 14131686 1.090000e-177 634
19 TraesCS7D01G397600 chr5A 88.528 523 55 5 2251 2769 17143455 17143976 5.050000e-176 628
20 TraesCS7D01G397600 chr5A 88.528 523 54 6 2252 2769 584942771 584943292 5.050000e-176 628
21 TraesCS7D01G397600 chr2A 83.851 483 58 9 2921 3398 115498875 115499342 7.060000e-120 442
22 TraesCS7D01G397600 chr2A 84.173 139 21 1 4401 4539 24204221 24204084 4.830000e-27 134
23 TraesCS7D01G397600 chr3D 83.745 486 56 10 2921 3398 279698436 279698906 9.140000e-119 438
24 TraesCS7D01G397600 chr2B 83.264 484 60 10 2921 3399 156323792 156323325 7.110000e-115 425
25 TraesCS7D01G397600 chr4B 90.058 171 16 1 2757 2926 406552612 406552782 3.600000e-53 220
26 TraesCS7D01G397600 chr4B 91.558 154 12 1 2767 2919 291859868 291860021 2.170000e-50 211
27 TraesCS7D01G397600 chr4D 92.105 152 12 0 2770 2921 484619005 484619156 1.680000e-51 215
28 TraesCS7D01G397600 chr6B 79.730 222 45 0 4953 5174 227273377 227273156 2.210000e-35 161
29 TraesCS7D01G397600 chr6A 76.923 234 40 8 3598 3829 166501758 166501979 3.760000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G397600 chr7D 512273555 512281222 7667 False 14161.000000 14161 100.000000 1 7668 1 chr7D.!!$F2 7667
1 TraesCS7D01G397600 chr7D 50709045 50710190 1145 False 1986.000000 1986 97.911000 2252 3399 1 chr7D.!!$F1 1147
2 TraesCS7D01G397600 chr7D 97955428 97955948 520 True 592.000000 592 87.262000 2249 2769 1 chr7D.!!$R1 520
3 TraesCS7D01G397600 chr7B 544132479 544138962 6483 False 3002.666667 6329 90.528667 1 7668 3 chr7B.!!$F1 7667
4 TraesCS7D01G397600 chr7A 585059076 585065889 6813 False 2279.250000 6050 92.640000 17 7668 4 chr7A.!!$F1 7651
5 TraesCS7D01G397600 chr5D 546004384 546005535 1151 False 2052.000000 2052 98.872000 2251 3399 1 chr5D.!!$F2 1148
6 TraesCS7D01G397600 chr5D 129974950 129976099 1149 True 2034.000000 2034 98.609000 2250 3398 1 chr5D.!!$R1 1148
7 TraesCS7D01G397600 chr2D 450875477 450876628 1151 True 2023.000000 2023 98.438000 2252 3398 1 chr2D.!!$R1 1146
8 TraesCS7D01G397600 chr2D 35550855 35552006 1151 False 1989.000000 1989 97.917000 2252 3398 1 chr2D.!!$F1 1146
9 TraesCS7D01G397600 chr1B 14131686 14132210 524 True 634.000000 634 88.593000 2249 2769 1 chr1B.!!$R1 520
10 TraesCS7D01G397600 chr5A 17143455 17143976 521 False 628.000000 628 88.528000 2251 2769 1 chr5A.!!$F1 518
11 TraesCS7D01G397600 chr5A 584942771 584943292 521 False 628.000000 628 88.528000 2252 2769 1 chr5A.!!$F2 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
498 515 0.039618 GAATCTTCAACCCCCAGCCA 59.960 55.000 0.00 0.0 0.00 4.75 F
714 982 0.811281 AAAACCGATAAGCCAGCAGC 59.189 50.000 0.00 0.0 44.25 5.25 F
1067 1342 1.436195 TTGGTGCTGCTGTTGTCGTC 61.436 55.000 0.00 0.0 0.00 4.20 F
1678 1962 1.684983 GAGGTCGATCGTGGGGATTTA 59.315 52.381 15.94 0.0 34.82 1.40 F
1882 2175 1.160137 GATTGTGATAGATGGGCCGC 58.840 55.000 0.00 0.0 0.00 6.53 F
3588 4086 0.962356 AAAATGGAGCGGCACCTGAG 60.962 55.000 17.31 0.0 0.00 3.35 F
4248 4750 0.106819 GCCAGAATGACCAGAGGCAT 60.107 55.000 0.00 0.0 41.63 4.40 F
4312 4814 0.108424 GCTCGCAGTTCAGGTCTGAT 60.108 55.000 1.16 0.0 39.64 2.90 F
4844 5353 0.328592 TAGCCGAGACTCTGACCACT 59.671 55.000 0.03 0.0 0.00 4.00 F
4859 5368 1.202582 ACCACTGAGAACGAGGAATCG 59.797 52.381 0.00 0.0 39.31 3.34 F
5512 6026 1.672881 AGTCAATCTGCTTTATGCCGC 59.327 47.619 0.00 0.0 42.00 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1362 1640 1.728426 CACCAGGAACGACGACGAC 60.728 63.158 15.32 7.43 42.66 4.34 R
1680 1964 1.832998 AGAGAATTAACGGCCGGGTTA 59.167 47.619 31.76 17.24 0.00 2.85 R
1882 2175 2.193087 CTACCCAACCCTGAACCCCG 62.193 65.000 0.00 0.00 0.00 5.73 R
3497 3995 6.484364 AAAATCCTGGGCCTAATTTGTATG 57.516 37.500 4.53 0.00 0.00 2.39 R
3827 4325 4.273235 CGATGGCTGCTTGTATTTGTATGA 59.727 41.667 0.00 0.00 0.00 2.15 R
5147 5656 0.253044 TCCCATAGCAGCACCAGAAC 59.747 55.000 0.00 0.00 0.00 3.01 R
5512 6026 1.063951 GTACTGACCGTTCGTCTGCG 61.064 60.000 0.00 0.00 42.58 5.18 R
5626 6140 2.386661 ATCTTAGTGGCCTGTGAACG 57.613 50.000 3.32 0.00 0.00 3.95 R
6329 6849 0.108585 AGCGTCAGGTTGTTGGTGAT 59.891 50.000 0.00 0.00 0.00 3.06 R
6469 6989 0.742990 CGCCCTGAACATTCGCCTTA 60.743 55.000 0.00 0.00 0.00 2.69 R
7363 7899 0.321564 TGGTCATTCGCCCTTGTCAG 60.322 55.000 0.00 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.036992 ACAGACCAGAGCTTCAGTTCAG 59.963 50.000 0.00 0.00 0.00 3.02
50 51 0.246086 CTTCAGTTCAGAGAGCGGCT 59.754 55.000 0.00 0.00 0.00 5.52
81 94 4.962836 GGCAGTGGCAGTGGCAGT 62.963 66.667 35.60 20.93 42.93 4.40
84 97 4.962836 AGTGGCAGTGGCAGTGGC 62.963 66.667 34.49 34.49 43.62 5.01
117 130 2.418692 CACGGCCACACAATTACTACA 58.581 47.619 2.24 0.00 0.00 2.74
131 144 7.602644 CACAATTACTACATGTACTGTTGGAGT 59.397 37.037 0.08 11.82 39.39 3.85
136 149 3.926616 ACATGTACTGTTGGAGTAGCAC 58.073 45.455 0.00 0.00 37.87 4.40
193 206 3.195661 GTTCCTCGAGTGAAAACAGTGT 58.804 45.455 12.31 0.00 0.00 3.55
195 208 3.869065 TCCTCGAGTGAAAACAGTGTTT 58.131 40.909 15.58 15.58 0.00 2.83
196 209 3.621268 TCCTCGAGTGAAAACAGTGTTTG 59.379 43.478 21.53 8.40 0.00 2.93
197 210 3.374058 CCTCGAGTGAAAACAGTGTTTGT 59.626 43.478 21.53 11.72 43.45 2.83
207 220 2.746269 ACAGTGTTTGTTGCATGCATC 58.254 42.857 23.37 21.28 36.31 3.91
208 221 1.717113 CAGTGTTTGTTGCATGCATCG 59.283 47.619 23.37 2.24 0.00 3.84
339 356 3.753272 CCTGTTAGGTGCACATATATGGC 59.247 47.826 20.43 16.04 0.00 4.40
359 376 3.450578 GCAGCATTATTGTTCATGTGGG 58.549 45.455 0.00 0.00 0.00 4.61
412 429 2.173020 CATAGCGTGCCGTGATGCA 61.173 57.895 0.00 0.00 39.37 3.96
437 454 0.386476 TGTGTAGGTGTGGTCACGAC 59.614 55.000 0.00 0.00 44.68 4.34
495 512 1.821136 GCAAGAATCTTCAACCCCCAG 59.179 52.381 0.00 0.00 0.00 4.45
498 515 0.039618 GAATCTTCAACCCCCAGCCA 59.960 55.000 0.00 0.00 0.00 4.75
514 531 4.038763 CCCAGCCACAGATAAATACGAGTA 59.961 45.833 0.00 0.00 0.00 2.59
515 532 5.223382 CCAGCCACAGATAAATACGAGTAG 58.777 45.833 0.00 0.00 0.00 2.57
516 533 5.221263 CCAGCCACAGATAAATACGAGTAGT 60.221 44.000 0.00 0.00 0.00 2.73
517 534 6.016527 CCAGCCACAGATAAATACGAGTAGTA 60.017 42.308 0.00 0.00 40.03 1.82
518 535 7.423199 CAGCCACAGATAAATACGAGTAGTAA 58.577 38.462 0.00 0.00 39.04 2.24
519 536 7.378995 CAGCCACAGATAAATACGAGTAGTAAC 59.621 40.741 0.00 0.00 39.04 2.50
520 537 7.067859 AGCCACAGATAAATACGAGTAGTAACA 59.932 37.037 0.00 0.00 39.04 2.41
521 538 7.703621 GCCACAGATAAATACGAGTAGTAACAA 59.296 37.037 0.00 0.00 39.04 2.83
522 539 9.745880 CCACAGATAAATACGAGTAGTAACAAT 57.254 33.333 0.00 0.00 39.04 2.71
536 553 9.134734 GAGTAGTAACAATGAAGAGAAGAAGTG 57.865 37.037 0.00 0.00 0.00 3.16
607 875 3.440415 GCTTTGTACTGGCCCGCC 61.440 66.667 0.00 0.00 0.00 6.13
694 962 2.355126 CGTGATGGATCGCCGAGG 60.355 66.667 0.00 0.00 36.79 4.63
714 982 0.811281 AAAACCGATAAGCCAGCAGC 59.189 50.000 0.00 0.00 44.25 5.25
765 1038 4.337060 CTGTGCGTCGTCCGTCCA 62.337 66.667 0.00 0.00 39.32 4.02
809 1082 6.645790 AGCACATTGAATTTCTTGAGACTT 57.354 33.333 0.00 0.00 0.00 3.01
843 1116 3.991051 CTGTGGACCGTGGTCGCT 61.991 66.667 12.65 0.00 45.41 4.93
943 1216 1.806568 CGTGTGTGCTTGTTTGGGT 59.193 52.632 0.00 0.00 0.00 4.51
1067 1342 1.436195 TTGGTGCTGCTGTTGTCGTC 61.436 55.000 0.00 0.00 0.00 4.20
1434 1718 4.487412 GACGAGGTGTACGGGCGG 62.487 72.222 0.00 0.00 34.93 6.13
1615 1899 5.128991 TCCATCACATAACCGTGGTATACAA 59.871 40.000 5.01 0.00 37.50 2.41
1629 1913 7.308348 CCGTGGTATACAATATCCAACCAATTC 60.308 40.741 5.01 0.00 38.64 2.17
1644 1928 2.554142 CAATTCTCTATGTGGCTCGCA 58.446 47.619 0.00 0.00 0.00 5.10
1678 1962 1.684983 GAGGTCGATCGTGGGGATTTA 59.315 52.381 15.94 0.00 34.82 1.40
1679 1963 2.299297 GAGGTCGATCGTGGGGATTTAT 59.701 50.000 15.94 0.00 34.82 1.40
1680 1964 2.704065 AGGTCGATCGTGGGGATTTATT 59.296 45.455 15.94 0.00 34.82 1.40
1820 2113 2.292794 GACGAGGCGGTTCATGGCTA 62.293 60.000 0.00 0.00 42.99 3.93
1868 2161 3.340814 AGCTCAATTCTGTCCGATTGT 57.659 42.857 0.00 0.00 0.00 2.71
1882 2175 1.160137 GATTGTGATAGATGGGCCGC 58.840 55.000 0.00 0.00 0.00 6.53
1964 2263 4.220602 ACCCCAATTCTTTGATAGCAACAC 59.779 41.667 0.00 0.00 34.60 3.32
2006 2305 9.040939 GTTTGGTTATCAATTTAGTTGTTTGCT 57.959 29.630 0.00 0.00 38.95 3.91
2054 2353 3.934579 GCCTTTGCTATTTGTTTGGATGG 59.065 43.478 0.00 0.00 33.53 3.51
2066 2365 8.986929 ATTTGTTTGGATGGTTTTGGAATTTA 57.013 26.923 0.00 0.00 0.00 1.40
2067 2366 7.793927 TTGTTTGGATGGTTTTGGAATTTAC 57.206 32.000 0.00 0.00 0.00 2.01
2068 2367 7.130681 TGTTTGGATGGTTTTGGAATTTACT 57.869 32.000 0.00 0.00 0.00 2.24
2116 2474 7.450124 TGTAGTTCATTTATTTACCCGCAAA 57.550 32.000 0.00 0.00 0.00 3.68
2430 2880 6.690957 TCTTTTGCTCTTCACATTAAACAACG 59.309 34.615 0.00 0.00 0.00 4.10
3328 3791 5.178623 CAGTGTAACAAATCAACGGCTAAGA 59.821 40.000 0.00 0.00 41.43 2.10
3410 3873 2.912956 AGTAGAGATTTTGGCAGGGTGA 59.087 45.455 0.00 0.00 0.00 4.02
3588 4086 0.962356 AAAATGGAGCGGCACCTGAG 60.962 55.000 17.31 0.00 0.00 3.35
3676 4174 3.257561 CTCGCCGGCAAGATGTCG 61.258 66.667 28.98 7.38 46.34 4.35
3825 4323 2.151202 CACCATCCACAAGGTACACAC 58.849 52.381 0.00 0.00 36.07 3.82
3826 4324 1.771854 ACCATCCACAAGGTACACACA 59.228 47.619 0.00 0.00 36.07 3.72
3827 4325 2.375174 ACCATCCACAAGGTACACACAT 59.625 45.455 0.00 0.00 36.07 3.21
3967 4465 0.983378 GGCCTCCTGGACCAGTACAT 60.983 60.000 20.24 0.00 34.48 2.29
4076 4574 3.381983 ATCGAGCGGCACTGGACA 61.382 61.111 1.45 0.00 35.78 4.02
4097 4595 2.885861 CTCAACGAGGAGACCGGG 59.114 66.667 6.32 0.00 37.05 5.73
4167 4669 1.081376 CGTCACCGTCTCTTTCGCT 60.081 57.895 0.00 0.00 0.00 4.93
4171 4673 1.154073 ACCGTCTCTTTCGCTACGC 60.154 57.895 0.00 0.00 34.13 4.42
4205 4707 3.806667 GCTGCCTCTGCCCCTGAT 61.807 66.667 0.00 0.00 36.33 2.90
4213 4715 1.629353 CTCTGCCCCTGATGCTGATAT 59.371 52.381 0.00 0.00 36.33 1.63
4214 4716 2.836372 CTCTGCCCCTGATGCTGATATA 59.164 50.000 0.00 0.00 36.33 0.86
4216 4718 3.199289 TCTGCCCCTGATGCTGATATATG 59.801 47.826 0.00 0.00 32.64 1.78
4239 4741 1.696832 GCTCCGTTCGCCAGAATGAC 61.697 60.000 2.37 0.00 44.12 3.06
4243 4745 0.389817 CGTTCGCCAGAATGACCAGA 60.390 55.000 0.00 0.00 44.12 3.86
4248 4750 0.106819 GCCAGAATGACCAGAGGCAT 60.107 55.000 0.00 0.00 41.63 4.40
4312 4814 0.108424 GCTCGCAGTTCAGGTCTGAT 60.108 55.000 1.16 0.00 39.64 2.90
4431 4937 1.070776 GTGTGTTCTTCGCGTTTCCTC 60.071 52.381 5.77 0.00 0.00 3.71
4433 4939 1.456165 GTGTTCTTCGCGTTTCCTCTC 59.544 52.381 5.77 0.00 0.00 3.20
4478 4984 0.675208 ACGCCAACACGCATATTCCA 60.675 50.000 0.00 0.00 36.19 3.53
4493 4999 4.485834 CCAATCGTCGTCGGCGGA 62.486 66.667 20.32 6.62 38.89 5.54
4568 5076 2.089980 CCTCCAAGTCTGCATTTCTGG 58.910 52.381 0.00 0.00 0.00 3.86
4574 5082 4.761739 CCAAGTCTGCATTTCTGGAGTTTA 59.238 41.667 0.00 0.00 41.30 2.01
4740 5249 7.770897 AGTGAATTCTGGTATGTAACTGATTCC 59.229 37.037 7.05 0.00 0.00 3.01
4763 5272 5.392380 CCAGAATGATGGCAGAAGTTTACAC 60.392 44.000 0.00 0.00 39.69 2.90
4788 5297 4.635223 TGTCTTCTGTCAGGAGTTTCATG 58.365 43.478 8.06 0.00 0.00 3.07
4814 5323 3.575965 AATGATTTTGCCAGGTTCGAC 57.424 42.857 0.00 0.00 0.00 4.20
4844 5353 0.328592 TAGCCGAGACTCTGACCACT 59.671 55.000 0.03 0.00 0.00 4.00
4856 5365 1.613925 CTGACCACTGAGAACGAGGAA 59.386 52.381 0.00 0.00 0.00 3.36
4859 5368 1.202582 ACCACTGAGAACGAGGAATCG 59.797 52.381 0.00 0.00 39.31 3.34
4862 5371 1.887198 ACTGAGAACGAGGAATCGTGT 59.113 47.619 3.81 0.00 46.41 4.49
4896 5405 3.827008 TGCTCAAGGTGATCTACATCC 57.173 47.619 0.00 0.00 0.00 3.51
4912 5421 6.131961 TCTACATCCTCATCTTCTGATCACA 58.868 40.000 0.00 0.00 32.10 3.58
4967 5476 7.171678 GCTAAAGAAATTATGCAGGTATCTCGT 59.828 37.037 0.00 0.00 0.00 4.18
5175 5684 1.811941 GCTGCTATGGGACTGGTAAGC 60.812 57.143 0.00 0.00 0.00 3.09
5178 5690 1.811941 GCTATGGGACTGGTAAGCAGC 60.812 57.143 0.00 0.00 0.00 5.25
5206 5718 6.183360 GCATATCTCCTAGTTTCAGAACTGGA 60.183 42.308 4.50 7.08 44.50 3.86
5222 5735 2.189594 TGGAAACAGAGATGGCACTG 57.810 50.000 2.35 2.35 38.49 3.66
5223 5736 1.699083 TGGAAACAGAGATGGCACTGA 59.301 47.619 10.22 0.00 36.40 3.41
5224 5737 2.106338 TGGAAACAGAGATGGCACTGAA 59.894 45.455 10.22 0.00 36.40 3.02
5225 5738 3.245016 TGGAAACAGAGATGGCACTGAAT 60.245 43.478 10.22 0.00 36.40 2.57
5227 5740 4.380233 GGAAACAGAGATGGCACTGAATTG 60.380 45.833 10.22 0.00 36.40 2.32
5228 5741 3.430042 ACAGAGATGGCACTGAATTGT 57.570 42.857 10.22 0.00 36.40 2.71
5398 5912 1.846712 AAGTGAAGCCCCTCAGCTCC 61.847 60.000 0.00 0.00 44.11 4.70
5512 6026 1.672881 AGTCAATCTGCTTTATGCCGC 59.327 47.619 0.00 0.00 42.00 6.53
5634 6148 2.881074 CATCTCCAGGTACGTTCACAG 58.119 52.381 0.00 0.00 0.00 3.66
5666 6180 7.804843 AGATTTGGCAAATGTTTGATGAAAA 57.195 28.000 28.78 0.00 40.55 2.29
5683 6197 5.200368 TGAAAAAGAGGCTTGATTGTTCC 57.800 39.130 0.00 0.00 0.00 3.62
5704 6218 5.482908 TCCAAGTTCTAACTCAATCTCTGC 58.517 41.667 0.00 0.00 38.57 4.26
5827 6341 8.321353 AGGTCTGAAAATTTTCACCTTCTTTTT 58.679 29.630 26.19 11.43 39.34 1.94
5897 6411 1.921243 TCATGCGTCCACAGTTATCG 58.079 50.000 0.00 0.00 0.00 2.92
5902 6422 1.918609 GCGTCCACAGTTATCGAACTC 59.081 52.381 0.00 0.00 44.39 3.01
5908 6428 4.082733 TCCACAGTTATCGAACTCACTCTG 60.083 45.833 0.00 0.00 44.39 3.35
5959 6479 2.301583 GACTCTCCAAGCAGTCCTCTTT 59.698 50.000 0.00 0.00 34.09 2.52
6310 6830 3.188786 GCGCTGATCGAGCCGTTT 61.189 61.111 0.00 0.00 46.01 3.60
6424 6944 2.593956 GCCCGGTTCTGTCTCCCTT 61.594 63.158 0.00 0.00 0.00 3.95
6486 7006 1.017387 GCTAAGGCGAATGTTCAGGG 58.983 55.000 0.00 0.00 0.00 4.45
6622 7142 0.038166 TCCTGGAGCCATTGTTCACC 59.962 55.000 0.00 0.00 0.00 4.02
6623 7143 0.038744 CCTGGAGCCATTGTTCACCT 59.961 55.000 0.00 0.00 0.00 4.00
6649 7169 2.941720 GGACGAGTTCTACACCGTCTAT 59.058 50.000 17.50 0.00 43.28 1.98
6656 7176 6.342338 AGTTCTACACCGTCTATTTCAACT 57.658 37.500 0.00 0.00 0.00 3.16
6702 7223 6.127793 AGTCTAGTCTGGTGTACCGAATAAT 58.872 40.000 0.00 0.00 39.43 1.28
6831 7353 1.349026 CTCAGGGAAGCTTCACCAGAA 59.651 52.381 25.09 12.17 0.00 3.02
6841 7363 4.670765 AGCTTCACCAGAATTCCAGAAAT 58.329 39.130 0.65 0.00 32.31 2.17
6920 7450 0.907486 TGGCAGATCCAAGAGTGAGG 59.093 55.000 0.00 0.00 43.21 3.86
6936 7466 1.638070 TGAGGGCAAGAGAGAGAGAGA 59.362 52.381 0.00 0.00 0.00 3.10
6937 7467 2.301346 GAGGGCAAGAGAGAGAGAGAG 58.699 57.143 0.00 0.00 0.00 3.20
6938 7468 1.922447 AGGGCAAGAGAGAGAGAGAGA 59.078 52.381 0.00 0.00 0.00 3.10
6939 7469 2.092212 AGGGCAAGAGAGAGAGAGAGAG 60.092 54.545 0.00 0.00 0.00 3.20
7130 7660 1.270550 CACTGCATTTGGTCCTGGTTC 59.729 52.381 0.00 0.00 0.00 3.62
7233 7764 2.115427 TCTCACAACCAACCTCACAGA 58.885 47.619 0.00 0.00 0.00 3.41
7276 7807 6.719829 TCACCTGACACTGAACTTCTATCTTA 59.280 38.462 0.00 0.00 0.00 2.10
7327 7863 4.023291 TGATGTAAATTTTCTCAGGGGCC 58.977 43.478 0.00 0.00 0.00 5.80
7339 7875 2.034221 GGGGCCAACTGGTCTGAC 59.966 66.667 4.39 0.00 40.38 3.51
7340 7876 2.529744 GGGGCCAACTGGTCTGACT 61.530 63.158 4.39 0.00 40.38 3.41
7341 7877 1.198759 GGGGCCAACTGGTCTGACTA 61.199 60.000 4.39 0.00 40.38 2.59
7342 7878 0.912486 GGGCCAACTGGTCTGACTAT 59.088 55.000 4.39 0.00 40.38 2.12
7343 7879 1.134371 GGGCCAACTGGTCTGACTATC 60.134 57.143 4.39 0.00 40.38 2.08
7354 7890 5.272402 TGGTCTGACTATCATCAGGAAGAA 58.728 41.667 7.85 0.00 45.30 2.52
7357 7893 6.097554 GGTCTGACTATCATCAGGAAGAAAGA 59.902 42.308 7.85 0.00 45.30 2.52
7363 7899 9.308318 GACTATCATCAGGAAGAAAGAAACTAC 57.692 37.037 0.00 0.00 0.00 2.73
7373 7909 4.390264 AGAAAGAAACTACTGACAAGGGC 58.610 43.478 0.00 0.00 0.00 5.19
7470 8012 4.392940 ACAGACAAACATCAGGAGGAAAG 58.607 43.478 0.00 0.00 0.00 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.322466 CTGTCGGCCCTCCCAGTT 61.322 66.667 0.00 0.00 0.00 3.16
11 12 3.775654 CTGGTCTGTCGGCCCTCC 61.776 72.222 0.00 0.00 0.00 4.30
13 14 2.681778 CTCTGGTCTGTCGGCCCT 60.682 66.667 0.00 0.00 0.00 5.19
41 42 2.508887 CAGACTGCAGCCGCTCTC 60.509 66.667 15.27 2.19 39.64 3.20
50 51 3.243816 TGCCAGAGCCAGACTGCA 61.244 61.111 0.00 0.00 38.69 4.41
83 96 2.393768 CCGTGGCACATGTCTCTGC 61.394 63.158 19.09 0.00 45.33 4.26
84 97 2.393768 GCCGTGGCACATGTCTCTG 61.394 63.158 19.09 0.00 45.33 3.35
85 98 2.046892 GCCGTGGCACATGTCTCT 60.047 61.111 19.09 0.00 45.33 3.10
86 99 3.127533 GGCCGTGGCACATGTCTC 61.128 66.667 19.09 0.00 45.33 3.36
117 130 3.173965 AGGTGCTACTCCAACAGTACAT 58.826 45.455 0.00 0.00 36.43 2.29
131 144 1.367346 TTTGGTGATGGGAGGTGCTA 58.633 50.000 0.00 0.00 0.00 3.49
136 149 4.344104 ACTATTGTTTTGGTGATGGGAGG 58.656 43.478 0.00 0.00 0.00 4.30
193 206 2.223089 CGAGATCGATGCATGCAACAAA 60.223 45.455 26.68 13.29 43.02 2.83
195 208 0.932399 CGAGATCGATGCATGCAACA 59.068 50.000 26.68 11.83 43.02 3.33
196 209 0.234106 CCGAGATCGATGCATGCAAC 59.766 55.000 26.68 21.63 43.02 4.17
197 210 0.179076 ACCGAGATCGATGCATGCAA 60.179 50.000 26.68 9.06 43.02 4.08
198 211 0.877213 CACCGAGATCGATGCATGCA 60.877 55.000 25.04 25.04 43.02 3.96
199 212 0.877649 ACACCGAGATCGATGCATGC 60.878 55.000 11.82 11.82 36.00 4.06
200 213 2.422276 TACACCGAGATCGATGCATG 57.578 50.000 2.46 0.00 36.00 4.06
201 214 2.623416 TCTTACACCGAGATCGATGCAT 59.377 45.455 0.54 0.00 36.00 3.96
207 220 0.317103 CCGCTCTTACACCGAGATCG 60.317 60.000 0.00 0.00 33.80 3.69
208 221 0.595310 GCCGCTCTTACACCGAGATC 60.595 60.000 0.00 0.00 0.00 2.75
339 356 3.450578 GCCCACATGAACAATAATGCTG 58.549 45.455 0.00 0.00 0.00 4.41
359 376 0.108992 TCGAGGATTGTACCACACGC 60.109 55.000 0.00 0.00 0.00 5.34
402 419 1.669115 ACACTCTGTGCATCACGGC 60.669 57.895 0.00 0.00 40.25 5.68
412 429 1.687123 GACCACACCTACACACTCTGT 59.313 52.381 0.00 0.00 36.82 3.41
415 432 1.602165 CGTGACCACACCTACACACTC 60.602 57.143 0.00 0.00 43.34 3.51
429 446 0.318784 AAAGCTCTCGTGTCGTGACC 60.319 55.000 0.00 0.00 0.00 4.02
437 454 2.863153 CGGCCAAAAGCTCTCGTG 59.137 61.111 2.24 0.00 43.05 4.35
461 478 0.397941 TCTTGCTTGGGTGAGGTGAG 59.602 55.000 0.00 0.00 0.00 3.51
495 512 7.198390 TGTTACTACTCGTATTTATCTGTGGC 58.802 38.462 0.00 0.00 0.00 5.01
514 531 8.964476 TTTCACTTCTTCTCTTCATTGTTACT 57.036 30.769 0.00 0.00 0.00 2.24
517 534 8.139989 CCATTTTCACTTCTTCTCTTCATTGTT 58.860 33.333 0.00 0.00 0.00 2.83
518 535 7.655490 CCATTTTCACTTCTTCTCTTCATTGT 58.345 34.615 0.00 0.00 0.00 2.71
519 536 6.585322 GCCATTTTCACTTCTTCTCTTCATTG 59.415 38.462 0.00 0.00 0.00 2.82
520 537 6.569226 CGCCATTTTCACTTCTTCTCTTCATT 60.569 38.462 0.00 0.00 0.00 2.57
521 538 5.106396 CGCCATTTTCACTTCTTCTCTTCAT 60.106 40.000 0.00 0.00 0.00 2.57
522 539 4.214119 CGCCATTTTCACTTCTTCTCTTCA 59.786 41.667 0.00 0.00 0.00 3.02
530 547 0.539438 TGGCCGCCATTTTCACTTCT 60.539 50.000 8.43 0.00 0.00 2.85
536 553 3.005684 TGAATATGATGGCCGCCATTTTC 59.994 43.478 25.80 22.42 45.26 2.29
541 558 2.064434 TTTGAATATGATGGCCGCCA 57.936 45.000 16.17 16.17 38.19 5.69
607 875 2.572191 TTCCCGTGATGTAAGTAGCG 57.428 50.000 0.00 0.00 0.00 4.26
694 962 1.202188 GCTGCTGGCTTATCGGTTTTC 60.202 52.381 0.00 0.00 38.06 2.29
714 982 2.099427 GGAGTAAACGAGGCCTCTACTG 59.901 54.545 28.68 18.06 0.00 2.74
765 1038 4.259690 GCTATTACGAACAAGCGAACGAAT 60.260 41.667 0.00 0.00 34.83 3.34
809 1082 3.314080 CCACAGGAAAAAGACAGCGTTTA 59.686 43.478 0.00 0.00 0.00 2.01
943 1216 1.691976 CAGTCCACTCCACAACCACTA 59.308 52.381 0.00 0.00 0.00 2.74
1081 1356 3.953775 CTCCTTGGCCACCACCGT 61.954 66.667 3.88 0.00 30.78 4.83
1082 1357 3.953775 ACTCCTTGGCCACCACCG 61.954 66.667 3.88 0.00 30.78 4.94
1083 1358 2.282462 CACTCCTTGGCCACCACC 60.282 66.667 3.88 0.00 30.78 4.61
1084 1359 2.985847 GCACTCCTTGGCCACCAC 60.986 66.667 3.88 0.00 30.78 4.16
1085 1360 3.497115 TGCACTCCTTGGCCACCA 61.497 61.111 3.88 0.00 0.00 4.17
1086 1361 2.985847 GTGCACTCCTTGGCCACC 60.986 66.667 3.88 0.00 0.00 4.61
1087 1362 3.357079 CGTGCACTCCTTGGCCAC 61.357 66.667 16.19 0.00 0.00 5.01
1088 1363 3.113514 TTCGTGCACTCCTTGGCCA 62.114 57.895 16.19 0.00 0.00 5.36
1089 1364 2.281484 TTCGTGCACTCCTTGGCC 60.281 61.111 16.19 0.00 0.00 5.36
1360 1638 2.552768 CAGGAACGACGACGACGA 59.447 61.111 25.15 0.00 42.66 4.20
1361 1639 2.501222 CCAGGAACGACGACGACG 60.501 66.667 17.60 17.60 42.66 5.12
1362 1640 1.728426 CACCAGGAACGACGACGAC 60.728 63.158 15.32 7.43 42.66 4.34
1615 1899 6.006449 GCCACATAGAGAATTGGTTGGATAT 58.994 40.000 0.00 0.00 0.00 1.63
1644 1928 2.227089 GACCTCCACGAATGGCGAGT 62.227 60.000 0.00 0.00 46.80 4.18
1679 1963 2.236893 AGAGAATTAACGGCCGGGTTAA 59.763 45.455 31.76 24.65 44.02 2.01
1680 1964 1.832998 AGAGAATTAACGGCCGGGTTA 59.167 47.619 31.76 17.24 0.00 2.85
1868 2161 3.625897 CCCGCGGCCCATCTATCA 61.626 66.667 22.85 0.00 0.00 2.15
1882 2175 2.193087 CTACCCAACCCTGAACCCCG 62.193 65.000 0.00 0.00 0.00 5.73
1964 2263 6.391227 AACCAAACAAACATACTCCTCAAG 57.609 37.500 0.00 0.00 0.00 3.02
2033 2332 5.151297 ACCATCCAAACAAATAGCAAAGG 57.849 39.130 0.00 0.00 0.00 3.11
2054 2353 7.095397 GGCACCAACATAAGTAAATTCCAAAAC 60.095 37.037 0.00 0.00 0.00 2.43
2206 2647 7.361116 GCCCATTTAATGTTGAAAATGAACTGG 60.361 37.037 4.15 0.00 42.90 4.00
2430 2880 9.736023 CTTTTTATAGGAATTCATTGTGCTACC 57.264 33.333 7.93 0.00 0.00 3.18
3497 3995 6.484364 AAAATCCTGGGCCTAATTTGTATG 57.516 37.500 4.53 0.00 0.00 2.39
3825 4323 5.503662 TGGCTGCTTGTATTTGTATGATG 57.496 39.130 0.00 0.00 0.00 3.07
3826 4324 5.049198 CGATGGCTGCTTGTATTTGTATGAT 60.049 40.000 0.00 0.00 0.00 2.45
3827 4325 4.273235 CGATGGCTGCTTGTATTTGTATGA 59.727 41.667 0.00 0.00 0.00 2.15
4097 4595 2.740714 GAGCACGTCGTTCATGCCC 61.741 63.158 0.00 0.00 40.33 5.36
4167 4669 0.319986 TGAAGCCATCAACACGCGTA 60.320 50.000 13.44 0.00 34.30 4.42
4171 4673 3.317608 GCATGAAGCCATCAACACG 57.682 52.632 0.00 0.00 42.54 4.49
4205 4707 4.071961 ACGGAGCAAACATATATCAGCA 57.928 40.909 0.00 0.00 0.00 4.41
4213 4715 0.320858 TGGCGAACGGAGCAAACATA 60.321 50.000 0.00 0.00 36.08 2.29
4214 4716 1.577328 CTGGCGAACGGAGCAAACAT 61.577 55.000 0.00 0.00 36.08 2.71
4216 4718 1.503818 TTCTGGCGAACGGAGCAAAC 61.504 55.000 0.00 0.00 35.48 2.93
4312 4814 0.185901 ACAGGGCAAAAGGAAGCTCA 59.814 50.000 0.00 0.00 32.36 4.26
4342 4846 3.708890 TGAACAAAATGCAGAGCAAGTG 58.291 40.909 0.00 0.00 43.62 3.16
4345 4849 3.069872 ACCATGAACAAAATGCAGAGCAA 59.930 39.130 0.00 0.00 43.62 3.91
4431 4937 1.671261 CGAAAGACTGTCAGCCTGGAG 60.671 57.143 10.88 0.00 0.00 3.86
4433 4939 0.671781 CCGAAAGACTGTCAGCCTGG 60.672 60.000 10.88 1.45 0.00 4.45
4478 4984 2.752322 TTTGTCCGCCGACGACGATT 62.752 55.000 9.28 0.00 42.37 3.34
4493 4999 4.441079 CCGGTAACCTCGTATCTCATTTGT 60.441 45.833 0.00 0.00 0.00 2.83
4559 5066 9.860898 AATTCATACTTTAAACTCCAGAAATGC 57.139 29.630 0.00 0.00 0.00 3.56
4568 5076 8.635983 GCCGAAACAAATTCATACTTTAAACTC 58.364 33.333 0.00 0.00 37.96 3.01
4574 5082 6.686630 TCATGCCGAAACAAATTCATACTTT 58.313 32.000 0.00 0.00 37.96 2.66
4740 5249 5.413833 AGTGTAAACTTCTGCCATCATTCTG 59.586 40.000 0.00 0.00 0.00 3.02
4763 5272 5.118990 TGAAACTCCTGACAGAAGACAAAG 58.881 41.667 3.32 0.00 0.00 2.77
4788 5297 4.525912 ACCTGGCAAAATCATTTCAGAC 57.474 40.909 0.00 0.00 0.00 3.51
4814 5323 2.125832 TCGGCTAAACGCTTCGGG 60.126 61.111 0.00 0.00 39.13 5.14
4856 5365 5.902681 AGCATGTTGTATGTAGTACACGAT 58.097 37.500 4.80 0.00 42.82 3.73
4859 5368 6.036083 CCTTGAGCATGTTGTATGTAGTACAC 59.964 42.308 4.80 0.00 42.82 2.90
4862 5371 6.071051 TCACCTTGAGCATGTTGTATGTAGTA 60.071 38.462 0.00 0.00 0.00 1.82
4896 5405 9.985318 GAGTTATTTTTGTGATCAGAAGATGAG 57.015 33.333 5.34 0.00 42.53 2.90
4912 5421 9.484806 AGATTCTTGGGATGATGAGTTATTTTT 57.515 29.630 0.00 0.00 0.00 1.94
4967 5476 2.215942 TCGTCCATCTGAAGAGGTGA 57.784 50.000 0.00 0.00 31.03 4.02
5147 5656 0.253044 TCCCATAGCAGCACCAGAAC 59.747 55.000 0.00 0.00 0.00 3.01
5175 5684 4.202295 TGAAACTAGGAGATATGCCTGCTG 60.202 45.833 4.36 0.00 35.57 4.41
5178 5690 5.798125 TCTGAAACTAGGAGATATGCCTG 57.202 43.478 4.36 0.00 36.96 4.85
5184 5696 7.612677 GTTTCCAGTTCTGAAACTAGGAGATA 58.387 38.462 8.25 0.00 43.99 1.98
5206 5718 4.147321 ACAATTCAGTGCCATCTCTGTTT 58.853 39.130 0.00 0.00 35.80 2.83
5209 5721 3.374367 CAGACAATTCAGTGCCATCTCTG 59.626 47.826 0.00 0.00 35.68 3.35
5210 5722 3.262660 TCAGACAATTCAGTGCCATCTCT 59.737 43.478 0.00 0.00 0.00 3.10
5217 5730 6.538021 AGATAACAGATCAGACAATTCAGTGC 59.462 38.462 0.00 0.00 0.00 4.40
5219 5732 6.538021 GCAGATAACAGATCAGACAATTCAGT 59.462 38.462 0.00 0.00 0.00 3.41
5220 5733 6.537660 TGCAGATAACAGATCAGACAATTCAG 59.462 38.462 0.00 0.00 0.00 3.02
5221 5734 6.408869 TGCAGATAACAGATCAGACAATTCA 58.591 36.000 0.00 0.00 0.00 2.57
5222 5735 6.018098 CCTGCAGATAACAGATCAGACAATTC 60.018 42.308 17.39 0.00 37.32 2.17
5223 5736 5.821470 CCTGCAGATAACAGATCAGACAATT 59.179 40.000 17.39 0.00 37.32 2.32
5224 5737 5.366460 CCTGCAGATAACAGATCAGACAAT 58.634 41.667 17.39 0.00 37.32 2.71
5225 5738 4.383444 CCCTGCAGATAACAGATCAGACAA 60.383 45.833 17.39 0.00 37.32 3.18
5227 5740 3.386078 TCCCTGCAGATAACAGATCAGAC 59.614 47.826 17.39 0.00 37.32 3.51
5228 5741 3.646534 TCCCTGCAGATAACAGATCAGA 58.353 45.455 17.39 0.00 37.32 3.27
5398 5912 5.519566 CGAAACCTGAAGATTCTGATCAGAG 59.480 44.000 23.92 13.10 42.48 3.35
5512 6026 1.063951 GTACTGACCGTTCGTCTGCG 61.064 60.000 0.00 0.00 42.58 5.18
5626 6140 2.386661 ATCTTAGTGGCCTGTGAACG 57.613 50.000 3.32 0.00 0.00 3.95
5683 6197 7.432350 AAAGCAGAGATTGAGTTAGAACTTG 57.568 36.000 0.00 0.00 39.88 3.16
5829 6343 7.173907 GCTGAAATACATTGATGCATAGTAGGT 59.826 37.037 0.00 0.00 0.00 3.08
5830 6344 7.389884 AGCTGAAATACATTGATGCATAGTAGG 59.610 37.037 0.00 0.00 0.00 3.18
5831 6345 8.320396 AGCTGAAATACATTGATGCATAGTAG 57.680 34.615 0.00 0.00 0.00 2.57
5832 6346 8.562052 CAAGCTGAAATACATTGATGCATAGTA 58.438 33.333 0.00 1.10 0.00 1.82
5833 6347 7.283807 TCAAGCTGAAATACATTGATGCATAGT 59.716 33.333 0.00 0.00 0.00 2.12
5834 6348 7.645402 TCAAGCTGAAATACATTGATGCATAG 58.355 34.615 0.00 0.00 0.00 2.23
5836 6350 6.459670 TCAAGCTGAAATACATTGATGCAT 57.540 33.333 0.00 0.00 0.00 3.96
5897 6411 3.056962 TCTGCAGATGTCAGAGTGAGTTC 60.057 47.826 13.74 0.00 35.81 3.01
5959 6479 3.797353 GCGAGGAGGAATGGCCCA 61.797 66.667 0.00 0.00 37.37 5.36
6329 6849 0.108585 AGCGTCAGGTTGTTGGTGAT 59.891 50.000 0.00 0.00 0.00 3.06
6412 6932 0.891373 CGAGCTCAAGGGAGACAGAA 59.109 55.000 15.40 0.00 44.26 3.02
6415 6935 2.973899 GCGAGCTCAAGGGAGACA 59.026 61.111 15.40 0.00 44.26 3.41
6469 6989 0.742990 CGCCCTGAACATTCGCCTTA 60.743 55.000 0.00 0.00 0.00 2.69
6622 7142 2.094649 GGTGTAGAACTCGTCCCTCAAG 60.095 54.545 0.00 0.00 0.00 3.02
6623 7143 1.891150 GGTGTAGAACTCGTCCCTCAA 59.109 52.381 0.00 0.00 0.00 3.02
6649 7169 1.227704 TCAGGCGCCGAAGTTGAAA 60.228 52.632 23.20 0.00 0.00 2.69
6656 7176 0.886938 TTCATTTGTCAGGCGCCGAA 60.887 50.000 23.20 12.98 0.00 4.30
6916 7446 1.638070 TCTCTCTCTCTCTTGCCCTCA 59.362 52.381 0.00 0.00 0.00 3.86
6920 7450 2.945668 GTCTCTCTCTCTCTCTCTTGCC 59.054 54.545 0.00 0.00 0.00 4.52
6962 7492 3.103738 CTGCTCTATGCGCATTGTTTTC 58.896 45.455 30.42 15.99 46.63 2.29
6968 7498 3.459232 TTCTACTGCTCTATGCGCATT 57.541 42.857 30.42 11.21 46.63 3.56
7010 7540 2.558378 ACGATCATGGTCTGCATTCTG 58.442 47.619 4.09 0.00 0.00 3.02
7021 7551 2.285220 CGTTTGGCTTCTACGATCATGG 59.715 50.000 0.00 0.00 37.47 3.66
7108 7638 1.588082 CAGGACCAAATGCAGTGGC 59.412 57.895 17.14 10.77 40.02 5.01
7130 7660 0.673644 CTGGCTAGGTTGGAACACGG 60.674 60.000 0.00 0.00 39.29 4.94
7233 7764 4.082125 GGTGAGATGTTGGTGGAATTCTT 58.918 43.478 5.23 0.00 0.00 2.52
7276 7807 0.401105 AGCTGGGCTATCTCCACCAT 60.401 55.000 0.00 0.00 36.99 3.55
7327 7863 4.403752 TCCTGATGATAGTCAGACCAGTTG 59.596 45.833 5.53 0.00 46.77 3.16
7339 7875 9.311916 CAGTAGTTTCTTTCTTCCTGATGATAG 57.688 37.037 0.00 0.00 0.00 2.08
7340 7876 9.035890 TCAGTAGTTTCTTTCTTCCTGATGATA 57.964 33.333 0.00 0.00 0.00 2.15
7341 7877 7.821846 GTCAGTAGTTTCTTTCTTCCTGATGAT 59.178 37.037 0.00 0.00 0.00 2.45
7342 7878 7.155328 GTCAGTAGTTTCTTTCTTCCTGATGA 58.845 38.462 0.00 0.00 0.00 2.92
7343 7879 6.931281 TGTCAGTAGTTTCTTTCTTCCTGATG 59.069 38.462 0.00 0.00 0.00 3.07
7354 7890 2.367567 TCGCCCTTGTCAGTAGTTTCTT 59.632 45.455 0.00 0.00 0.00 2.52
7357 7893 2.922740 TTCGCCCTTGTCAGTAGTTT 57.077 45.000 0.00 0.00 0.00 2.66
7363 7899 0.321564 TGGTCATTCGCCCTTGTCAG 60.322 55.000 0.00 0.00 0.00 3.51
7373 7909 2.638480 ATGGTACCCATGGTCATTCG 57.362 50.000 11.73 0.00 43.39 3.34
7455 7993 2.641815 ACTGCTCTTTCCTCCTGATGTT 59.358 45.455 0.00 0.00 0.00 2.71
7459 8001 2.889512 TGTACTGCTCTTTCCTCCTGA 58.110 47.619 0.00 0.00 0.00 3.86
7470 8012 4.116747 AGCACTCTGTAATGTACTGCTC 57.883 45.455 0.00 0.00 33.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.