Multiple sequence alignment - TraesCS7D01G396900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G396900 chr7D 100.000 4445 0 0 1 4445 511323729 511328173 0.000000e+00 8209
1 TraesCS7D01G396900 chr7D 94.463 307 14 2 3747 4050 265508076 265507770 1.870000e-128 470
2 TraesCS7D01G396900 chr7D 94.175 309 16 1 3744 4050 539381770 539382078 1.870000e-128 470
3 TraesCS7D01G396900 chr7B 93.583 3678 133 33 80 3733 540247240 540250838 0.000000e+00 5389
4 TraesCS7D01G396900 chr7A 93.467 3643 123 41 120 3723 583870607 583874173 0.000000e+00 5302
5 TraesCS7D01G396900 chr7A 82.323 198 31 4 4246 4440 181187704 181187900 7.650000e-38 169
6 TraesCS7D01G396900 chr2D 78.556 956 181 23 2474 3417 637903674 637904617 3.800000e-170 608
7 TraesCS7D01G396900 chr2D 77.892 977 194 18 2474 3439 426943995 426944960 4.950000e-164 588
8 TraesCS7D01G396900 chr2D 93.631 314 16 2 3741 4050 213696989 213697302 2.420000e-127 466
9 TraesCS7D01G396900 chr2D 74.912 1140 204 62 1309 2401 426942845 426943949 3.150000e-121 446
10 TraesCS7D01G396900 chr2D 82.266 203 29 6 4244 4445 621956229 621956033 7.650000e-38 169
11 TraesCS7D01G396900 chr2A 78.013 946 184 20 2474 3407 761306776 761307709 1.390000e-159 573
12 TraesCS7D01G396900 chr2A 75.154 1139 198 59 1313 2401 561556152 561555049 1.460000e-124 457
13 TraesCS7D01G396900 chr2B 77.648 944 191 19 2474 3407 796598490 796597557 1.400000e-154 556
14 TraesCS7D01G396900 chr2B 74.386 1140 207 59 1310 2401 503771121 503772223 4.140000e-110 409
15 TraesCS7D01G396900 chr2B 84.615 195 23 7 4246 4436 569014480 569014289 2.110000e-43 187
16 TraesCS7D01G396900 chr2B 86.667 150 18 2 2250 2398 796598666 796598518 9.890000e-37 165
17 TraesCS7D01G396900 chr6A 94.771 306 14 1 3747 4050 588602429 588602124 4.020000e-130 475
18 TraesCS7D01G396900 chr6A 77.399 323 52 15 1396 1712 603404401 603404708 5.910000e-39 172
19 TraesCS7D01G396900 chr5D 94.771 306 14 1 3747 4050 351152811 351153116 4.020000e-130 475
20 TraesCS7D01G396900 chr1D 94.771 306 14 1 3747 4050 103031927 103032232 4.020000e-130 475
21 TraesCS7D01G396900 chr1A 94.481 308 15 1 3745 4050 540722865 540723172 1.450000e-129 473
22 TraesCS7D01G396900 chr1A 72.761 536 114 22 1156 1672 7811153 7811675 7.700000e-33 152
23 TraesCS7D01G396900 chr5B 94.156 308 16 1 3745 4050 69282947 69282640 6.730000e-128 468
24 TraesCS7D01G396900 chr4D 94.444 306 14 2 3747 4050 414346541 414346237 6.730000e-128 468
25 TraesCS7D01G396900 chr4D 72.000 875 219 26 2461 3322 5525795 5526656 7.430000e-58 235
26 TraesCS7D01G396900 chrUn 78.104 443 87 9 2474 2911 22436995 22437432 5.670000e-69 272
27 TraesCS7D01G396900 chr4A 72.520 877 205 32 2464 3322 598147314 598146456 7.380000e-63 252
28 TraesCS7D01G396900 chr4B 71.312 983 240 37 2464 3425 9516148 9515187 9.680000e-52 215
29 TraesCS7D01G396900 chr6B 76.543 405 65 20 1314 1712 694972328 694972708 1.260000e-45 195
30 TraesCS7D01G396900 chr3D 83.582 201 30 3 4246 4445 352080994 352080796 7.590000e-43 185
31 TraesCS7D01G396900 chr3B 83.505 194 28 3 4246 4438 124102944 124102754 1.270000e-40 178
32 TraesCS7D01G396900 chr3B 82.915 199 27 7 4244 4436 450362627 450362430 5.910000e-39 172
33 TraesCS7D01G396900 chr1B 83.333 198 26 7 4246 4439 52420949 52421143 4.570000e-40 176
34 TraesCS7D01G396900 chr1B 83.333 198 26 7 4246 4439 52587221 52587415 4.570000e-40 176
35 TraesCS7D01G396900 chr6D 75.556 405 69 20 1314 1712 456789076 456789456 5.910000e-39 172
36 TraesCS7D01G396900 chr3A 82.828 198 28 6 4244 4436 469827719 469827523 5.910000e-39 172


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G396900 chr7D 511323729 511328173 4444 False 8209.0 8209 100.0000 1 4445 1 chr7D.!!$F1 4444
1 TraesCS7D01G396900 chr7B 540247240 540250838 3598 False 5389.0 5389 93.5830 80 3733 1 chr7B.!!$F1 3653
2 TraesCS7D01G396900 chr7A 583870607 583874173 3566 False 5302.0 5302 93.4670 120 3723 1 chr7A.!!$F2 3603
3 TraesCS7D01G396900 chr2D 637903674 637904617 943 False 608.0 608 78.5560 2474 3417 1 chr2D.!!$F2 943
4 TraesCS7D01G396900 chr2D 426942845 426944960 2115 False 517.0 588 76.4020 1309 3439 2 chr2D.!!$F3 2130
5 TraesCS7D01G396900 chr2A 761306776 761307709 933 False 573.0 573 78.0130 2474 3407 1 chr2A.!!$F1 933
6 TraesCS7D01G396900 chr2A 561555049 561556152 1103 True 457.0 457 75.1540 1313 2401 1 chr2A.!!$R1 1088
7 TraesCS7D01G396900 chr2B 503771121 503772223 1102 False 409.0 409 74.3860 1310 2401 1 chr2B.!!$F1 1091
8 TraesCS7D01G396900 chr2B 796597557 796598666 1109 True 360.5 556 82.1575 2250 3407 2 chr2B.!!$R2 1157
9 TraesCS7D01G396900 chr4D 5525795 5526656 861 False 235.0 235 72.0000 2461 3322 1 chr4D.!!$F1 861
10 TraesCS7D01G396900 chr4A 598146456 598147314 858 True 252.0 252 72.5200 2464 3322 1 chr4A.!!$R1 858
11 TraesCS7D01G396900 chr4B 9515187 9516148 961 True 215.0 215 71.3120 2464 3425 1 chr4B.!!$R1 961

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
801 849 0.032403 TTGGACGTTGATCCGTTCGT 59.968 50.0 0.0 0.59 41.98 3.85 F
978 1033 0.388649 GAGACGTGGTGCTTGATCGT 60.389 55.0 0.0 0.00 37.45 3.73 F
995 1054 0.458543 CGTGGTTGAGGTGATCGAGG 60.459 60.0 0.0 0.00 0.00 4.63 F
996 1055 0.895530 GTGGTTGAGGTGATCGAGGA 59.104 55.0 0.0 0.00 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1771 1866 1.242665 ACGACGGAGGTCTTGAGGAC 61.243 60.000 0.00 0.0 41.16 3.85 R
2502 2600 3.920196 ACGCGGTCGGTTTCCAGT 61.920 61.111 12.47 0.0 40.69 4.00 R
3087 3185 1.812093 CTCCTCGTCGAGCTCGTCT 60.812 63.158 33.33 0.0 40.80 4.18 R
3471 3572 0.108138 CCCGATCGAAGAACAAGCCT 60.108 55.000 18.66 0.0 43.58 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.668632 TGGTCACCGCTTGATCCC 59.331 61.111 0.00 0.00 33.90 3.85
18 19 1.918293 TGGTCACCGCTTGATCCCT 60.918 57.895 0.00 0.00 33.90 4.20
19 20 1.153349 GGTCACCGCTTGATCCCTC 60.153 63.158 0.00 0.00 36.32 4.30
20 21 1.617947 GGTCACCGCTTGATCCCTCT 61.618 60.000 0.00 0.00 36.32 3.69
21 22 0.179097 GTCACCGCTTGATCCCTCTC 60.179 60.000 0.00 0.00 36.32 3.20
22 23 1.144936 CACCGCTTGATCCCTCTCC 59.855 63.158 0.00 0.00 0.00 3.71
23 24 2.066999 ACCGCTTGATCCCTCTCCC 61.067 63.158 0.00 0.00 0.00 4.30
24 25 2.812619 CCGCTTGATCCCTCTCCCC 61.813 68.421 0.00 0.00 0.00 4.81
25 26 1.764054 CGCTTGATCCCTCTCCCCT 60.764 63.158 0.00 0.00 0.00 4.79
26 27 1.835693 GCTTGATCCCTCTCCCCTG 59.164 63.158 0.00 0.00 0.00 4.45
27 28 1.835693 CTTGATCCCTCTCCCCTGC 59.164 63.158 0.00 0.00 0.00 4.85
28 29 0.984961 CTTGATCCCTCTCCCCTGCA 60.985 60.000 0.00 0.00 0.00 4.41
29 30 1.274703 TTGATCCCTCTCCCCTGCAC 61.275 60.000 0.00 0.00 0.00 4.57
30 31 2.765807 ATCCCTCTCCCCTGCACG 60.766 66.667 0.00 0.00 0.00 5.34
31 32 3.625632 ATCCCTCTCCCCTGCACGT 62.626 63.158 0.00 0.00 0.00 4.49
32 33 2.238319 ATCCCTCTCCCCTGCACGTA 62.238 60.000 0.00 0.00 0.00 3.57
33 34 1.762460 CCCTCTCCCCTGCACGTAT 60.762 63.158 0.00 0.00 0.00 3.06
34 35 0.469331 CCCTCTCCCCTGCACGTATA 60.469 60.000 0.00 0.00 0.00 1.47
35 36 0.962489 CCTCTCCCCTGCACGTATAG 59.038 60.000 0.00 0.00 0.00 1.31
36 37 1.693627 CTCTCCCCTGCACGTATAGT 58.306 55.000 0.00 0.00 0.00 2.12
37 38 2.032620 CTCTCCCCTGCACGTATAGTT 58.967 52.381 0.00 0.00 0.00 2.24
38 39 1.754803 TCTCCCCTGCACGTATAGTTG 59.245 52.381 0.00 0.00 0.00 3.16
39 40 1.480954 CTCCCCTGCACGTATAGTTGT 59.519 52.381 0.00 0.00 0.00 3.32
40 41 2.691526 CTCCCCTGCACGTATAGTTGTA 59.308 50.000 0.00 0.00 0.00 2.41
41 42 3.302161 TCCCCTGCACGTATAGTTGTAT 58.698 45.455 0.00 0.00 0.00 2.29
42 43 4.472496 TCCCCTGCACGTATAGTTGTATA 58.528 43.478 0.00 0.00 0.00 1.47
43 44 4.279169 TCCCCTGCACGTATAGTTGTATAC 59.721 45.833 0.00 0.00 38.36 1.47
44 45 4.280174 CCCCTGCACGTATAGTTGTATACT 59.720 45.833 4.17 0.00 39.23 2.12
45 46 5.458891 CCCTGCACGTATAGTTGTATACTC 58.541 45.833 4.17 0.00 39.23 2.59
46 47 5.145059 CCTGCACGTATAGTTGTATACTCG 58.855 45.833 4.17 1.26 39.23 4.18
47 48 5.277683 CCTGCACGTATAGTTGTATACTCGT 60.278 44.000 4.17 1.81 39.23 4.18
48 49 5.741425 TGCACGTATAGTTGTATACTCGTC 58.259 41.667 4.17 0.00 39.23 4.20
49 50 4.837580 GCACGTATAGTTGTATACTCGTCG 59.162 45.833 4.17 3.30 39.23 5.12
50 51 4.837580 CACGTATAGTTGTATACTCGTCGC 59.162 45.833 4.17 0.00 39.23 5.19
51 52 4.747108 ACGTATAGTTGTATACTCGTCGCT 59.253 41.667 4.17 0.00 39.23 4.93
52 53 5.071515 CGTATAGTTGTATACTCGTCGCTG 58.928 45.833 4.17 0.00 39.23 5.18
53 54 5.332883 CGTATAGTTGTATACTCGTCGCTGT 60.333 44.000 4.17 0.00 39.23 4.40
54 55 6.129088 CGTATAGTTGTATACTCGTCGCTGTA 60.129 42.308 4.17 0.00 39.23 2.74
55 56 4.270178 AGTTGTATACTCGTCGCTGTAC 57.730 45.455 4.17 0.00 28.23 2.90
56 57 3.686241 AGTTGTATACTCGTCGCTGTACA 59.314 43.478 4.17 0.00 28.23 2.90
57 58 4.154737 AGTTGTATACTCGTCGCTGTACAA 59.845 41.667 4.17 7.52 28.23 2.41
58 59 4.683501 TGTATACTCGTCGCTGTACAAA 57.316 40.909 4.17 0.00 0.00 2.83
59 60 5.045668 TGTATACTCGTCGCTGTACAAAA 57.954 39.130 4.17 0.00 0.00 2.44
60 61 5.090757 TGTATACTCGTCGCTGTACAAAAG 58.909 41.667 4.17 0.00 0.00 2.27
61 62 2.503920 ACTCGTCGCTGTACAAAAGT 57.496 45.000 0.00 0.00 0.00 2.66
62 63 2.817901 ACTCGTCGCTGTACAAAAGTT 58.182 42.857 0.00 0.00 0.00 2.66
63 64 2.538449 ACTCGTCGCTGTACAAAAGTTG 59.462 45.455 0.00 0.00 0.00 3.16
64 65 1.862201 TCGTCGCTGTACAAAAGTTGG 59.138 47.619 0.00 0.00 34.12 3.77
65 66 1.595794 CGTCGCTGTACAAAAGTTGGT 59.404 47.619 0.00 0.00 34.12 3.67
66 67 2.031191 CGTCGCTGTACAAAAGTTGGTT 59.969 45.455 0.00 0.00 34.12 3.67
67 68 3.614588 GTCGCTGTACAAAAGTTGGTTC 58.385 45.455 0.00 0.00 34.12 3.62
68 69 3.064271 GTCGCTGTACAAAAGTTGGTTCA 59.936 43.478 0.00 0.00 34.12 3.18
69 70 3.064271 TCGCTGTACAAAAGTTGGTTCAC 59.936 43.478 0.00 0.00 34.12 3.18
70 71 3.702330 GCTGTACAAAAGTTGGTTCACC 58.298 45.455 0.00 0.00 34.12 4.02
71 72 3.790789 GCTGTACAAAAGTTGGTTCACCG 60.791 47.826 0.00 0.00 39.43 4.94
72 73 2.683867 TGTACAAAAGTTGGTTCACCGG 59.316 45.455 0.00 0.00 39.43 5.28
73 74 2.131776 ACAAAAGTTGGTTCACCGGA 57.868 45.000 9.46 0.00 39.43 5.14
74 75 2.021457 ACAAAAGTTGGTTCACCGGAG 58.979 47.619 9.46 0.00 39.43 4.63
75 76 1.029681 AAAAGTTGGTTCACCGGAGC 58.970 50.000 9.46 0.00 39.43 4.70
76 77 0.822121 AAAGTTGGTTCACCGGAGCC 60.822 55.000 9.46 4.82 44.13 4.70
96 97 3.743396 GCCAAAGCTAAAGATCGATCGAT 59.257 43.478 29.76 29.76 35.01 3.59
113 114 1.459539 ATCGATCATCGGTGGGGGT 60.460 57.895 7.33 0.00 40.88 4.95
260 277 2.405172 GATCTCCGCTAATTTCCCGTC 58.595 52.381 0.00 0.00 0.00 4.79
299 316 3.191581 GCTCAAAAGAACCCTAGAAAGGC 59.808 47.826 0.00 0.00 42.14 4.35
302 319 2.498644 AAGAACCCTAGAAAGGCTGC 57.501 50.000 0.00 0.00 42.14 5.25
322 339 2.766828 GCCTAGCTTCTCCCTGAAACTA 59.233 50.000 0.00 0.00 33.61 2.24
340 358 3.445008 ACTACTTTGGAGCTCTCATGGA 58.555 45.455 14.64 2.74 0.00 3.41
367 385 2.029838 AAGGCAGATTAAGCTGTCCG 57.970 50.000 21.01 0.00 41.34 4.79
429 461 0.172803 AGTTGTGTAGATCGCGACCC 59.827 55.000 12.93 6.59 40.69 4.46
430 462 0.172803 GTTGTGTAGATCGCGACCCT 59.827 55.000 12.93 14.74 35.54 4.34
506 538 3.561241 GCTTCCCGGATCCTCCCC 61.561 72.222 10.75 0.00 31.13 4.81
507 539 2.287251 CTTCCCGGATCCTCCCCT 59.713 66.667 10.75 0.00 31.13 4.79
605 653 1.793613 GCTTCGTGCATGTGTTCGC 60.794 57.895 5.68 0.00 42.31 4.70
606 654 1.507713 CTTCGTGCATGTGTTCGCG 60.508 57.895 5.68 0.00 37.53 5.87
607 655 3.571959 TTCGTGCATGTGTTCGCGC 62.572 57.895 0.00 0.00 36.30 6.86
644 692 4.855596 CGCAAGCTTCTTCTTGGC 57.144 55.556 0.00 0.00 42.68 4.52
714 762 2.872245 GCCATTTACGCTTGCTAGATGA 59.128 45.455 0.00 0.00 0.00 2.92
715 763 3.312421 GCCATTTACGCTTGCTAGATGAA 59.688 43.478 0.00 0.00 0.00 2.57
716 764 4.786609 GCCATTTACGCTTGCTAGATGAAC 60.787 45.833 0.00 0.00 0.00 3.18
717 765 4.508971 CATTTACGCTTGCTAGATGAACG 58.491 43.478 0.00 0.00 0.00 3.95
718 766 1.556564 TACGCTTGCTAGATGAACGC 58.443 50.000 0.00 0.00 0.00 4.84
719 767 1.084370 ACGCTTGCTAGATGAACGCC 61.084 55.000 0.00 0.00 0.00 5.68
720 768 1.638467 GCTTGCTAGATGAACGCCG 59.362 57.895 0.00 0.00 0.00 6.46
721 769 1.638467 CTTGCTAGATGAACGCCGC 59.362 57.895 0.00 0.00 0.00 6.53
722 770 1.079474 TTGCTAGATGAACGCCGCA 60.079 52.632 0.00 0.00 0.00 5.69
723 771 0.461870 TTGCTAGATGAACGCCGCAT 60.462 50.000 0.00 0.00 0.00 4.73
724 772 1.153597 TGCTAGATGAACGCCGCATG 61.154 55.000 0.00 0.00 0.00 4.06
725 773 1.566563 CTAGATGAACGCCGCATGC 59.433 57.895 7.91 7.91 0.00 4.06
726 774 1.835483 CTAGATGAACGCCGCATGCC 61.835 60.000 13.15 0.00 36.24 4.40
727 775 2.585791 TAGATGAACGCCGCATGCCA 62.586 55.000 13.15 3.00 36.24 4.92
728 776 3.739782 GATGAACGCCGCATGCCAC 62.740 63.158 13.15 3.01 36.24 5.01
730 778 4.465512 GAACGCCGCATGCCACTG 62.466 66.667 13.15 2.04 36.24 3.66
733 781 4.764336 CGCCGCATGCCACTGTTG 62.764 66.667 13.15 0.00 36.24 3.33
735 783 3.367743 CCGCATGCCACTGTTGCT 61.368 61.111 13.15 0.00 34.23 3.91
736 784 2.126618 CGCATGCCACTGTTGCTG 60.127 61.111 13.15 2.88 34.23 4.41
737 785 2.619165 CGCATGCCACTGTTGCTGA 61.619 57.895 13.15 0.00 34.23 4.26
738 786 1.080974 GCATGCCACTGTTGCTGAC 60.081 57.895 6.36 0.00 33.61 3.51
739 787 1.208358 CATGCCACTGTTGCTGACG 59.792 57.895 5.42 0.00 0.00 4.35
740 788 1.227943 ATGCCACTGTTGCTGACGT 60.228 52.632 5.42 0.00 0.00 4.34
741 789 1.509644 ATGCCACTGTTGCTGACGTG 61.510 55.000 5.42 0.00 34.65 4.49
742 790 2.633657 CCACTGTTGCTGACGTGC 59.366 61.111 0.00 0.00 34.01 5.34
765 813 1.103803 GCCTGATCGACCAGAGTGTA 58.896 55.000 8.88 0.00 36.29 2.90
787 835 1.129437 GTGCTGCGAATCTCTTTGGAC 59.871 52.381 0.00 0.00 0.00 4.02
801 849 0.032403 TTGGACGTTGATCCGTTCGT 59.968 50.000 0.00 0.59 41.98 3.85
806 854 0.713883 CGTTGATCCGTTCGTCTTGG 59.286 55.000 0.00 0.00 0.00 3.61
814 862 1.732259 CCGTTCGTCTTGGAAGATTGG 59.268 52.381 0.00 0.00 37.39 3.16
826 874 1.351017 GAAGATTGGGTGAGTGGGTCA 59.649 52.381 0.00 0.00 0.00 4.02
841 889 7.337942 GTGAGTGGGTCAAAATTAAGATGATCT 59.662 37.037 0.00 0.00 36.74 2.75
842 890 7.890127 TGAGTGGGTCAAAATTAAGATGATCTT 59.110 33.333 12.86 12.86 34.71 2.40
843 891 8.655935 AGTGGGTCAAAATTAAGATGATCTTT 57.344 30.769 13.54 0.00 37.89 2.52
844 892 8.743714 AGTGGGTCAAAATTAAGATGATCTTTC 58.256 33.333 13.54 0.00 37.89 2.62
866 914 8.954950 TTTCAATGGTGAAATTGTATTGTGTT 57.045 26.923 0.00 0.00 46.48 3.32
867 915 7.943413 TCAATGGTGAAATTGTATTGTGTTG 57.057 32.000 0.00 0.00 38.46 3.33
868 916 7.495901 TCAATGGTGAAATTGTATTGTGTTGT 58.504 30.769 0.00 0.00 38.46 3.32
869 917 8.633561 TCAATGGTGAAATTGTATTGTGTTGTA 58.366 29.630 0.00 0.00 38.46 2.41
902 955 7.680442 TTCATGGTGTTTTATTCGATCTGAA 57.320 32.000 0.00 3.14 41.81 3.02
913 968 8.996024 TTTATTCGATCTGAAATGTGTGTCTA 57.004 30.769 4.52 0.00 40.71 2.59
928 983 5.007626 TGTGTGTCTATTGTCTCTGTTTTGC 59.992 40.000 0.00 0.00 0.00 3.68
940 995 1.815003 CTGTTTTGCTGGGATGGAGAC 59.185 52.381 0.00 0.00 0.00 3.36
978 1033 0.388649 GAGACGTGGTGCTTGATCGT 60.389 55.000 0.00 0.00 37.45 3.73
981 1036 1.667830 CGTGGTGCTTGATCGTGGT 60.668 57.895 0.00 0.00 0.00 4.16
993 1052 1.134367 GATCGTGGTTGAGGTGATCGA 59.866 52.381 0.00 0.00 0.00 3.59
994 1053 0.526211 TCGTGGTTGAGGTGATCGAG 59.474 55.000 0.00 0.00 0.00 4.04
995 1054 0.458543 CGTGGTTGAGGTGATCGAGG 60.459 60.000 0.00 0.00 0.00 4.63
996 1055 0.895530 GTGGTTGAGGTGATCGAGGA 59.104 55.000 0.00 0.00 0.00 3.71
997 1056 1.275291 GTGGTTGAGGTGATCGAGGAA 59.725 52.381 0.00 0.00 0.00 3.36
998 1057 1.550524 TGGTTGAGGTGATCGAGGAAG 59.449 52.381 0.00 0.00 0.00 3.46
1284 1343 1.953686 GTGAAGCTGGGCAACTACAAA 59.046 47.619 0.00 0.00 0.00 2.83
1869 1967 1.446966 GTTCGAGGAGCAGCTGGTC 60.447 63.158 32.87 32.87 41.50 4.02
1878 1976 2.393768 GCAGCTGGTCATGACGGTG 61.394 63.158 21.49 21.49 0.00 4.94
2013 2111 2.517450 CGAGAAGTTCGGCATCGCC 61.517 63.158 0.00 0.00 45.54 5.54
2496 2594 1.367471 CAAGATCCGCATCCGCCTA 59.633 57.895 0.00 0.00 33.11 3.93
2502 2600 2.421314 CGCATCCGCCTATCCACA 59.579 61.111 0.00 0.00 33.11 4.17
3492 3593 1.000145 GCTTGTTCTTCGATCGGGTC 59.000 55.000 16.41 7.42 0.00 4.46
3493 3594 1.671850 GCTTGTTCTTCGATCGGGTCA 60.672 52.381 16.41 9.56 0.00 4.02
3494 3595 2.263077 CTTGTTCTTCGATCGGGTCAG 58.737 52.381 16.41 6.72 0.00 3.51
3495 3596 1.541379 TGTTCTTCGATCGGGTCAGA 58.459 50.000 16.41 8.98 0.00 3.27
3496 3597 1.890489 TGTTCTTCGATCGGGTCAGAA 59.110 47.619 16.41 14.15 0.00 3.02
3497 3598 2.496070 TGTTCTTCGATCGGGTCAGAAT 59.504 45.455 16.41 0.00 0.00 2.40
3498 3599 3.117046 GTTCTTCGATCGGGTCAGAATC 58.883 50.000 16.41 8.85 0.00 2.52
3499 3600 1.681793 TCTTCGATCGGGTCAGAATCC 59.318 52.381 16.41 0.00 0.00 3.01
3500 3601 1.409064 CTTCGATCGGGTCAGAATCCA 59.591 52.381 16.41 0.00 0.00 3.41
3501 3602 1.032794 TCGATCGGGTCAGAATCCAG 58.967 55.000 16.41 0.00 0.00 3.86
3502 3603 1.032794 CGATCGGGTCAGAATCCAGA 58.967 55.000 7.38 0.00 34.15 3.86
3503 3604 1.269309 CGATCGGGTCAGAATCCAGAC 60.269 57.143 7.38 0.00 32.65 3.51
3504 3605 2.035632 GATCGGGTCAGAATCCAGACT 58.964 52.381 3.96 0.00 35.18 3.24
3505 3606 1.938585 TCGGGTCAGAATCCAGACTT 58.061 50.000 3.96 0.00 35.18 3.01
3506 3607 1.825474 TCGGGTCAGAATCCAGACTTC 59.175 52.381 3.96 0.00 35.18 3.01
3525 3626 8.193438 CAGACTTCTGATTTTCTTTTTCCAAGT 58.807 33.333 0.00 0.00 46.59 3.16
3526 3627 9.408648 AGACTTCTGATTTTCTTTTTCCAAGTA 57.591 29.630 0.00 0.00 0.00 2.24
3649 3753 6.102663 ACTATGTTTGTCTCGAGAAGAATGG 58.897 40.000 18.55 10.90 35.21 3.16
3749 3853 9.771534 ATTCACATCTTCTATAAGTTCTTAGGC 57.228 33.333 0.00 0.00 34.13 3.93
3750 3854 7.727181 TCACATCTTCTATAAGTTCTTAGGCC 58.273 38.462 0.00 0.00 34.13 5.19
3751 3855 7.565398 TCACATCTTCTATAAGTTCTTAGGCCT 59.435 37.037 11.78 11.78 34.13 5.19
3752 3856 8.207545 CACATCTTCTATAAGTTCTTAGGCCTT 58.792 37.037 12.58 0.00 34.13 4.35
3753 3857 8.425703 ACATCTTCTATAAGTTCTTAGGCCTTC 58.574 37.037 12.58 0.00 34.13 3.46
3754 3858 8.646900 CATCTTCTATAAGTTCTTAGGCCTTCT 58.353 37.037 12.58 0.00 34.13 2.85
3755 3859 8.611051 TCTTCTATAAGTTCTTAGGCCTTCTT 57.389 34.615 12.58 10.88 34.13 2.52
3756 3860 9.047947 TCTTCTATAAGTTCTTAGGCCTTCTTT 57.952 33.333 12.58 0.00 34.13 2.52
3757 3861 9.103861 CTTCTATAAGTTCTTAGGCCTTCTTTG 57.896 37.037 12.58 0.00 0.00 2.77
3758 3862 7.565680 TCTATAAGTTCTTAGGCCTTCTTTGG 58.434 38.462 12.58 0.00 0.00 3.28
3759 3863 4.455070 AAGTTCTTAGGCCTTCTTTGGT 57.545 40.909 12.58 0.00 0.00 3.67
3760 3864 4.455070 AGTTCTTAGGCCTTCTTTGGTT 57.545 40.909 12.58 0.00 0.00 3.67
3761 3865 4.399219 AGTTCTTAGGCCTTCTTTGGTTC 58.601 43.478 12.58 0.00 0.00 3.62
3762 3866 4.141251 AGTTCTTAGGCCTTCTTTGGTTCA 60.141 41.667 12.58 0.00 0.00 3.18
3763 3867 4.657814 TCTTAGGCCTTCTTTGGTTCAT 57.342 40.909 12.58 0.00 0.00 2.57
3764 3868 5.772393 TCTTAGGCCTTCTTTGGTTCATA 57.228 39.130 12.58 0.00 0.00 2.15
3765 3869 5.745227 TCTTAGGCCTTCTTTGGTTCATAG 58.255 41.667 12.58 0.00 0.00 2.23
3766 3870 3.372440 AGGCCTTCTTTGGTTCATAGG 57.628 47.619 0.00 0.00 0.00 2.57
3767 3871 2.024941 AGGCCTTCTTTGGTTCATAGGG 60.025 50.000 0.00 0.00 0.00 3.53
3768 3872 2.291605 GGCCTTCTTTGGTTCATAGGGT 60.292 50.000 0.00 0.00 0.00 4.34
3769 3873 3.053917 GGCCTTCTTTGGTTCATAGGGTA 60.054 47.826 0.00 0.00 0.00 3.69
3770 3874 4.569015 GGCCTTCTTTGGTTCATAGGGTAA 60.569 45.833 0.00 0.00 0.00 2.85
3771 3875 4.640647 GCCTTCTTTGGTTCATAGGGTAAG 59.359 45.833 0.00 0.00 0.00 2.34
3772 3876 5.572885 GCCTTCTTTGGTTCATAGGGTAAGA 60.573 44.000 0.00 0.00 0.00 2.10
3773 3877 6.481643 CCTTCTTTGGTTCATAGGGTAAGAA 58.518 40.000 0.00 0.00 0.00 2.52
3774 3878 6.946009 CCTTCTTTGGTTCATAGGGTAAGAAA 59.054 38.462 0.00 0.00 31.92 2.52
3775 3879 7.450323 CCTTCTTTGGTTCATAGGGTAAGAAAA 59.550 37.037 0.00 0.00 31.92 2.29
3776 3880 8.950007 TTCTTTGGTTCATAGGGTAAGAAAAT 57.050 30.769 0.00 0.00 29.96 1.82
3777 3881 8.575649 TCTTTGGTTCATAGGGTAAGAAAATC 57.424 34.615 0.00 0.00 0.00 2.17
3778 3882 6.995511 TTGGTTCATAGGGTAAGAAAATCG 57.004 37.500 0.00 0.00 0.00 3.34
3779 3883 6.057321 TGGTTCATAGGGTAAGAAAATCGT 57.943 37.500 0.00 0.00 0.00 3.73
3780 3884 7.185318 TGGTTCATAGGGTAAGAAAATCGTA 57.815 36.000 0.00 0.00 0.00 3.43
3781 3885 7.270047 TGGTTCATAGGGTAAGAAAATCGTAG 58.730 38.462 0.00 0.00 0.00 3.51
3782 3886 6.704937 GGTTCATAGGGTAAGAAAATCGTAGG 59.295 42.308 0.00 0.00 0.00 3.18
3783 3887 7.418254 GGTTCATAGGGTAAGAAAATCGTAGGA 60.418 40.741 0.00 0.00 0.00 2.94
3784 3888 7.664552 TCATAGGGTAAGAAAATCGTAGGAA 57.335 36.000 0.00 0.00 0.00 3.36
3785 3889 8.258850 TCATAGGGTAAGAAAATCGTAGGAAT 57.741 34.615 0.00 0.00 0.00 3.01
3786 3890 9.370930 TCATAGGGTAAGAAAATCGTAGGAATA 57.629 33.333 0.00 0.00 0.00 1.75
3787 3891 9.640963 CATAGGGTAAGAAAATCGTAGGAATAG 57.359 37.037 0.00 0.00 0.00 1.73
3788 3892 7.909485 AGGGTAAGAAAATCGTAGGAATAGA 57.091 36.000 0.00 0.00 0.00 1.98
3789 3893 8.315220 AGGGTAAGAAAATCGTAGGAATAGAA 57.685 34.615 0.00 0.00 0.00 2.10
3790 3894 8.765517 AGGGTAAGAAAATCGTAGGAATAGAAA 58.234 33.333 0.00 0.00 0.00 2.52
3791 3895 9.387257 GGGTAAGAAAATCGTAGGAATAGAAAA 57.613 33.333 0.00 0.00 0.00 2.29
3795 3899 9.720769 AAGAAAATCGTAGGAATAGAAAAGTCA 57.279 29.630 0.00 0.00 0.00 3.41
3796 3900 9.892130 AGAAAATCGTAGGAATAGAAAAGTCAT 57.108 29.630 0.00 0.00 0.00 3.06
3799 3903 9.765795 AAATCGTAGGAATAGAAAAGTCATAGG 57.234 33.333 0.00 0.00 0.00 2.57
3800 3904 8.707796 ATCGTAGGAATAGAAAAGTCATAGGA 57.292 34.615 0.00 0.00 30.18 2.94
3801 3905 8.529424 TCGTAGGAATAGAAAAGTCATAGGAA 57.471 34.615 0.00 0.00 0.00 3.36
3802 3906 8.974238 TCGTAGGAATAGAAAAGTCATAGGAAA 58.026 33.333 0.00 0.00 0.00 3.13
3803 3907 9.765795 CGTAGGAATAGAAAAGTCATAGGAAAT 57.234 33.333 0.00 0.00 0.00 2.17
3806 3910 9.844257 AGGAATAGAAAAGTCATAGGAAATGAG 57.156 33.333 0.00 0.00 0.00 2.90
3807 3911 9.838339 GGAATAGAAAAGTCATAGGAAATGAGA 57.162 33.333 0.00 0.00 0.00 3.27
3811 3915 8.729805 AGAAAAGTCATAGGAAATGAGATGAC 57.270 34.615 5.86 5.86 45.57 3.06
3812 3916 8.324306 AGAAAAGTCATAGGAAATGAGATGACA 58.676 33.333 14.37 0.00 46.94 3.58
3813 3917 9.118300 GAAAAGTCATAGGAAATGAGATGACAT 57.882 33.333 14.37 1.96 46.94 3.06
3814 3918 8.447924 AAAGTCATAGGAAATGAGATGACATG 57.552 34.615 14.37 0.00 46.94 3.21
3815 3919 7.134362 AGTCATAGGAAATGAGATGACATGT 57.866 36.000 14.37 0.00 46.94 3.21
3816 3920 8.255111 AGTCATAGGAAATGAGATGACATGTA 57.745 34.615 14.37 0.00 46.94 2.29
3817 3921 8.878211 AGTCATAGGAAATGAGATGACATGTAT 58.122 33.333 14.37 0.00 46.94 2.29
3818 3922 9.149225 GTCATAGGAAATGAGATGACATGTATC 57.851 37.037 0.00 2.87 44.91 2.24
3819 3923 9.097946 TCATAGGAAATGAGATGACATGTATCT 57.902 33.333 14.05 14.05 37.59 1.98
3820 3924 9.368674 CATAGGAAATGAGATGACATGTATCTC 57.631 37.037 24.04 24.04 46.82 2.75
3830 3934 9.368674 GAGATGACATGTATCTCAAATCCTATG 57.631 37.037 24.95 0.00 46.22 2.23
3831 3935 9.097946 AGATGACATGTATCTCAAATCCTATGA 57.902 33.333 0.00 0.00 29.05 2.15
3832 3936 9.368674 GATGACATGTATCTCAAATCCTATGAG 57.631 37.037 0.00 0.00 44.53 2.90
3833 3937 8.255111 TGACATGTATCTCAAATCCTATGAGT 57.745 34.615 0.00 0.00 43.77 3.41
3834 3938 9.367160 TGACATGTATCTCAAATCCTATGAGTA 57.633 33.333 0.00 0.00 43.77 2.59
3835 3939 9.853555 GACATGTATCTCAAATCCTATGAGTAG 57.146 37.037 0.00 0.00 43.77 2.57
3836 3940 9.593565 ACATGTATCTCAAATCCTATGAGTAGA 57.406 33.333 0.00 0.00 43.77 2.59
3850 3954 8.713708 CCTATGAGTAGAAATAGGAAAGGAGA 57.286 38.462 3.09 0.00 45.72 3.71
3851 3955 9.320295 CCTATGAGTAGAAATAGGAAAGGAGAT 57.680 37.037 3.09 0.00 45.72 2.75
3853 3957 6.821388 TGAGTAGAAATAGGAAAGGAGATGC 58.179 40.000 0.00 0.00 0.00 3.91
3854 3958 6.181206 AGTAGAAATAGGAAAGGAGATGCC 57.819 41.667 0.00 0.00 0.00 4.40
3855 3959 4.445557 AGAAATAGGAAAGGAGATGCCC 57.554 45.455 0.00 0.00 37.37 5.36
3856 3960 4.050757 AGAAATAGGAAAGGAGATGCCCT 58.949 43.478 0.00 0.00 38.42 5.19
3866 3970 4.591321 AGGAGATGCCCTTTAATTCACA 57.409 40.909 0.00 0.00 37.37 3.58
3867 3971 5.134725 AGGAGATGCCCTTTAATTCACAT 57.865 39.130 0.00 0.00 37.37 3.21
3868 3972 5.136105 AGGAGATGCCCTTTAATTCACATC 58.864 41.667 0.00 0.00 37.37 3.06
3869 3973 4.889409 GGAGATGCCCTTTAATTCACATCA 59.111 41.667 0.00 0.00 37.07 3.07
3870 3974 5.537674 GGAGATGCCCTTTAATTCACATCAT 59.462 40.000 0.00 0.00 37.07 2.45
3871 3975 6.716628 GGAGATGCCCTTTAATTCACATCATA 59.283 38.462 0.00 0.00 37.07 2.15
3872 3976 7.094463 GGAGATGCCCTTTAATTCACATCATAG 60.094 40.741 0.00 0.00 37.07 2.23
3873 3977 6.718454 AGATGCCCTTTAATTCACATCATAGG 59.282 38.462 0.00 0.00 37.07 2.57
3874 3978 6.012337 TGCCCTTTAATTCACATCATAGGA 57.988 37.500 0.00 0.00 0.00 2.94
3875 3979 6.613699 TGCCCTTTAATTCACATCATAGGAT 58.386 36.000 0.00 0.00 0.00 3.24
3876 3980 7.068702 TGCCCTTTAATTCACATCATAGGATT 58.931 34.615 0.00 0.00 0.00 3.01
3877 3981 7.564660 TGCCCTTTAATTCACATCATAGGATTT 59.435 33.333 0.00 0.00 0.00 2.17
3878 3982 8.424133 GCCCTTTAATTCACATCATAGGATTTT 58.576 33.333 0.00 0.00 0.00 1.82
3902 4006 9.959721 TTTTTCTATTGAGTCTAGGCTAATGTT 57.040 29.630 0.00 0.00 0.00 2.71
3903 4007 9.959721 TTTTCTATTGAGTCTAGGCTAATGTTT 57.040 29.630 0.00 0.00 0.00 2.83
3910 4014 8.732746 TGAGTCTAGGCTAATGTTTATTTTCC 57.267 34.615 0.00 0.00 0.00 3.13
3911 4015 8.548877 TGAGTCTAGGCTAATGTTTATTTTCCT 58.451 33.333 0.00 0.00 33.86 3.36
3931 4035 8.989045 TTTCCTATGAAATATGGAGGATAGGA 57.011 34.615 0.00 0.00 39.66 2.94
3932 4036 8.989045 TTCCTATGAAATATGGAGGATAGGAA 57.011 34.615 12.28 12.28 44.60 3.36
3933 4037 8.615360 TCCTATGAAATATGGAGGATAGGAAG 57.385 38.462 0.00 0.00 38.86 3.46
3934 4038 8.409825 TCCTATGAAATATGGAGGATAGGAAGA 58.590 37.037 0.00 0.00 38.86 2.87
3935 4039 9.051259 CCTATGAAATATGGAGGATAGGAAGAA 57.949 37.037 0.00 0.00 36.16 2.52
3938 4042 9.972106 ATGAAATATGGAGGATAGGAAGAATTC 57.028 33.333 0.00 0.00 46.67 2.17
3972 4076 4.946160 AGGATTCCATTCCTACAAACCA 57.054 40.909 5.29 0.00 44.50 3.67
3973 4077 5.269554 AGGATTCCATTCCTACAAACCAA 57.730 39.130 5.29 0.00 44.50 3.67
3974 4078 5.650283 AGGATTCCATTCCTACAAACCAAA 58.350 37.500 5.29 0.00 44.50 3.28
3975 4079 5.716703 AGGATTCCATTCCTACAAACCAAAG 59.283 40.000 5.29 0.00 44.50 2.77
3976 4080 5.105351 GGATTCCATTCCTACAAACCAAAGG 60.105 44.000 0.00 0.00 32.68 3.11
3977 4081 3.773560 TCCATTCCTACAAACCAAAGGG 58.226 45.455 0.00 0.00 41.29 3.95
3978 4082 2.233676 CCATTCCTACAAACCAAAGGGC 59.766 50.000 0.00 0.00 37.90 5.19
3979 4083 3.165071 CATTCCTACAAACCAAAGGGCT 58.835 45.455 0.00 0.00 37.90 5.19
3980 4084 2.579410 TCCTACAAACCAAAGGGCTC 57.421 50.000 0.00 0.00 37.90 4.70
3981 4085 2.062636 TCCTACAAACCAAAGGGCTCT 58.937 47.619 0.00 0.00 37.90 4.09
3982 4086 3.253220 TCCTACAAACCAAAGGGCTCTA 58.747 45.455 0.00 0.00 37.90 2.43
3983 4087 3.653836 TCCTACAAACCAAAGGGCTCTAA 59.346 43.478 0.00 0.00 37.90 2.10
3984 4088 4.105057 TCCTACAAACCAAAGGGCTCTAAA 59.895 41.667 0.00 0.00 37.90 1.85
3985 4089 4.459337 CCTACAAACCAAAGGGCTCTAAAG 59.541 45.833 0.00 0.00 37.90 1.85
3986 4090 4.178956 ACAAACCAAAGGGCTCTAAAGA 57.821 40.909 0.00 0.00 37.90 2.52
3987 4091 4.542697 ACAAACCAAAGGGCTCTAAAGAA 58.457 39.130 0.00 0.00 37.90 2.52
3988 4092 4.959839 ACAAACCAAAGGGCTCTAAAGAAA 59.040 37.500 0.00 0.00 37.90 2.52
3989 4093 5.602561 ACAAACCAAAGGGCTCTAAAGAAAT 59.397 36.000 0.00 0.00 37.90 2.17
3990 4094 6.099701 ACAAACCAAAGGGCTCTAAAGAAATT 59.900 34.615 0.00 0.00 37.90 1.82
3991 4095 6.747414 AACCAAAGGGCTCTAAAGAAATTT 57.253 33.333 0.00 0.00 37.90 1.82
3992 4096 6.747414 ACCAAAGGGCTCTAAAGAAATTTT 57.253 33.333 0.00 0.00 37.90 1.82
3993 4097 7.136822 ACCAAAGGGCTCTAAAGAAATTTTT 57.863 32.000 0.00 0.00 37.90 1.94
4048 4152 9.803315 CTATAAAATTTCTAAACCAAAGGAGGC 57.197 33.333 0.00 0.00 0.00 4.70
4049 4153 5.483685 AAATTTCTAAACCAAAGGAGGCC 57.516 39.130 0.00 0.00 0.00 5.19
4050 4154 2.194201 TTCTAAACCAAAGGAGGCCG 57.806 50.000 0.00 0.00 0.00 6.13
4051 4155 0.322187 TCTAAACCAAAGGAGGCCGC 60.322 55.000 0.00 0.00 0.00 6.53
4052 4156 1.303806 TAAACCAAAGGAGGCCGCC 60.304 57.895 19.43 19.43 0.00 6.13
4053 4157 2.070399 TAAACCAAAGGAGGCCGCCA 62.070 55.000 28.68 0.21 0.00 5.69
4054 4158 2.730129 AAACCAAAGGAGGCCGCCAT 62.730 55.000 28.68 13.93 0.00 4.40
4055 4159 2.362889 CCAAAGGAGGCCGCCATT 60.363 61.111 28.68 19.88 0.00 3.16
4056 4160 2.713967 CCAAAGGAGGCCGCCATTG 61.714 63.158 29.90 29.90 36.61 2.82
4057 4161 2.362889 AAAGGAGGCCGCCATTGG 60.363 61.111 28.68 0.00 0.00 3.16
4058 4162 2.917897 AAAGGAGGCCGCCATTGGA 61.918 57.895 28.68 0.00 0.00 3.53
4059 4163 2.228841 AAAGGAGGCCGCCATTGGAT 62.229 55.000 28.68 1.94 0.00 3.41
4060 4164 1.352622 AAGGAGGCCGCCATTGGATA 61.353 55.000 28.68 0.00 0.00 2.59
4061 4165 1.136329 AGGAGGCCGCCATTGGATAT 61.136 55.000 28.68 0.21 0.00 1.63
4062 4166 0.618458 GGAGGCCGCCATTGGATATA 59.382 55.000 22.24 0.00 0.00 0.86
4063 4167 1.679032 GGAGGCCGCCATTGGATATAC 60.679 57.143 22.24 0.00 0.00 1.47
4064 4168 1.003118 GAGGCCGCCATTGGATATACA 59.997 52.381 13.15 0.00 0.00 2.29
4065 4169 1.635487 AGGCCGCCATTGGATATACAT 59.365 47.619 13.15 0.00 0.00 2.29
4066 4170 1.745087 GGCCGCCATTGGATATACATG 59.255 52.381 6.95 0.00 0.00 3.21
4067 4171 2.436417 GCCGCCATTGGATATACATGT 58.564 47.619 6.95 2.69 0.00 3.21
4068 4172 2.819608 GCCGCCATTGGATATACATGTT 59.180 45.455 2.30 0.00 0.00 2.71
4069 4173 3.366273 GCCGCCATTGGATATACATGTTG 60.366 47.826 2.30 0.00 0.00 3.33
4070 4174 3.820467 CCGCCATTGGATATACATGTTGT 59.180 43.478 2.30 0.00 0.00 3.32
4071 4175 5.000591 CCGCCATTGGATATACATGTTGTA 58.999 41.667 2.30 0.00 37.24 2.41
4072 4176 5.471797 CCGCCATTGGATATACATGTTGTAA 59.528 40.000 2.30 0.00 36.31 2.41
4073 4177 6.016693 CCGCCATTGGATATACATGTTGTAAA 60.017 38.462 2.30 0.00 36.31 2.01
4074 4178 7.309133 CCGCCATTGGATATACATGTTGTAAAT 60.309 37.037 2.30 0.00 36.31 1.40
4075 4179 8.081633 CGCCATTGGATATACATGTTGTAAATT 58.918 33.333 2.30 0.00 36.31 1.82
4076 4180 9.762933 GCCATTGGATATACATGTTGTAAATTT 57.237 29.630 2.30 0.00 36.31 1.82
4080 4184 9.995957 TTGGATATACATGTTGTAAATTTCGTG 57.004 29.630 2.30 0.00 36.31 4.35
4081 4185 8.126074 TGGATATACATGTTGTAAATTTCGTGC 58.874 33.333 2.30 0.00 36.31 5.34
4082 4186 8.126074 GGATATACATGTTGTAAATTTCGTGCA 58.874 33.333 2.30 0.00 36.31 4.57
4083 4187 9.497030 GATATACATGTTGTAAATTTCGTGCAA 57.503 29.630 2.30 0.00 36.31 4.08
4084 4188 9.847706 ATATACATGTTGTAAATTTCGTGCAAA 57.152 25.926 2.30 0.00 36.31 3.68
4085 4189 6.267500 ACATGTTGTAAATTTCGTGCAAAC 57.733 33.333 0.00 0.00 0.00 2.93
4086 4190 5.807520 ACATGTTGTAAATTTCGTGCAAACA 59.192 32.000 0.00 0.00 0.00 2.83
4087 4191 6.478344 ACATGTTGTAAATTTCGTGCAAACAT 59.522 30.769 0.00 0.00 0.00 2.71
4088 4192 6.503616 TGTTGTAAATTTCGTGCAAACATC 57.496 33.333 0.00 0.00 0.00 3.06
4089 4193 5.460419 TGTTGTAAATTTCGTGCAAACATCC 59.540 36.000 0.00 0.00 0.00 3.51
4090 4194 5.188327 TGTAAATTTCGTGCAAACATCCA 57.812 34.783 0.00 0.00 0.00 3.41
4091 4195 5.777802 TGTAAATTTCGTGCAAACATCCAT 58.222 33.333 0.00 0.00 0.00 3.41
4092 4196 6.914259 TGTAAATTTCGTGCAAACATCCATA 58.086 32.000 0.00 0.00 0.00 2.74
4093 4197 7.542890 TGTAAATTTCGTGCAAACATCCATAT 58.457 30.769 0.00 0.00 0.00 1.78
4094 4198 7.700234 TGTAAATTTCGTGCAAACATCCATATC 59.300 33.333 0.00 0.00 0.00 1.63
4095 4199 6.455360 AATTTCGTGCAAACATCCATATCT 57.545 33.333 0.00 0.00 0.00 1.98
4096 4200 4.880886 TTCGTGCAAACATCCATATCTG 57.119 40.909 0.00 0.00 0.00 2.90
4097 4201 3.205338 TCGTGCAAACATCCATATCTGG 58.795 45.455 0.00 0.00 44.64 3.86
4107 4211 3.627395 TCCATATCTGGAGTTGCGTTT 57.373 42.857 0.00 0.00 46.95 3.60
4108 4212 3.950397 TCCATATCTGGAGTTGCGTTTT 58.050 40.909 0.00 0.00 46.95 2.43
4109 4213 4.331968 TCCATATCTGGAGTTGCGTTTTT 58.668 39.130 0.00 0.00 46.95 1.94
4124 4228 1.064946 TTTTTGTTGTGCGCTCCCG 59.935 52.632 9.73 0.00 37.57 5.14
4125 4229 1.658686 TTTTTGTTGTGCGCTCCCGT 61.659 50.000 9.73 0.00 36.67 5.28
4126 4230 2.329678 TTTTGTTGTGCGCTCCCGTG 62.330 55.000 9.73 0.00 36.67 4.94
4135 4239 2.668550 GCTCCCGTGCCTCGTTTT 60.669 61.111 0.00 0.00 37.94 2.43
4136 4240 2.966309 GCTCCCGTGCCTCGTTTTG 61.966 63.158 0.00 0.00 37.94 2.44
4137 4241 1.597027 CTCCCGTGCCTCGTTTTGT 60.597 57.895 0.00 0.00 37.94 2.83
4138 4242 1.153127 TCCCGTGCCTCGTTTTGTT 60.153 52.632 0.00 0.00 37.94 2.83
4139 4243 1.008995 CCCGTGCCTCGTTTTGTTG 60.009 57.895 0.00 0.00 37.94 3.33
4140 4244 1.008995 CCGTGCCTCGTTTTGTTGG 60.009 57.895 0.00 0.00 37.94 3.77
4141 4245 1.657181 CGTGCCTCGTTTTGTTGGC 60.657 57.895 0.00 0.00 45.10 4.52
4142 4246 1.299850 GTGCCTCGTTTTGTTGGCC 60.300 57.895 0.00 0.00 44.32 5.36
4143 4247 1.454847 TGCCTCGTTTTGTTGGCCT 60.455 52.632 3.32 0.00 44.32 5.19
4144 4248 1.007387 GCCTCGTTTTGTTGGCCTG 60.007 57.895 3.32 0.00 39.49 4.85
4145 4249 1.659794 CCTCGTTTTGTTGGCCTGG 59.340 57.895 3.32 0.00 0.00 4.45
4146 4250 1.106944 CCTCGTTTTGTTGGCCTGGT 61.107 55.000 3.32 0.00 0.00 4.00
4147 4251 0.744281 CTCGTTTTGTTGGCCTGGTT 59.256 50.000 3.32 0.00 0.00 3.67
4148 4252 1.136110 CTCGTTTTGTTGGCCTGGTTT 59.864 47.619 3.32 0.00 0.00 3.27
4149 4253 1.550976 TCGTTTTGTTGGCCTGGTTTT 59.449 42.857 3.32 0.00 0.00 2.43
4150 4254 2.028020 TCGTTTTGTTGGCCTGGTTTTT 60.028 40.909 3.32 0.00 0.00 1.94
4151 4255 2.350192 CGTTTTGTTGGCCTGGTTTTTC 59.650 45.455 3.32 0.00 0.00 2.29
4152 4256 3.605634 GTTTTGTTGGCCTGGTTTTTCT 58.394 40.909 3.32 0.00 0.00 2.52
4153 4257 3.990959 TTTGTTGGCCTGGTTTTTCTT 57.009 38.095 3.32 0.00 0.00 2.52
4154 4258 3.990959 TTGTTGGCCTGGTTTTTCTTT 57.009 38.095 3.32 0.00 0.00 2.52
4155 4259 3.990959 TGTTGGCCTGGTTTTTCTTTT 57.009 38.095 3.32 0.00 0.00 2.27
4156 4260 4.293662 TGTTGGCCTGGTTTTTCTTTTT 57.706 36.364 3.32 0.00 0.00 1.94
4172 4276 2.605837 TTTTTCCTTTTTGTCGGCCC 57.394 45.000 0.00 0.00 0.00 5.80
4173 4277 0.386113 TTTTCCTTTTTGTCGGCCCG 59.614 50.000 0.00 0.00 0.00 6.13
4174 4278 0.465824 TTTCCTTTTTGTCGGCCCGA 60.466 50.000 0.00 0.00 0.00 5.14
4175 4279 0.250989 TTCCTTTTTGTCGGCCCGAT 60.251 50.000 10.04 0.00 38.42 4.18
4176 4280 0.250989 TCCTTTTTGTCGGCCCGATT 60.251 50.000 10.04 0.00 38.42 3.34
4177 4281 0.170339 CCTTTTTGTCGGCCCGATTC 59.830 55.000 10.04 0.00 38.42 2.52
4178 4282 0.878416 CTTTTTGTCGGCCCGATTCA 59.122 50.000 10.04 0.00 38.42 2.57
4179 4283 1.472480 CTTTTTGTCGGCCCGATTCAT 59.528 47.619 10.04 0.00 38.42 2.57
4180 4284 2.404923 TTTTGTCGGCCCGATTCATA 57.595 45.000 10.04 0.00 38.42 2.15
4181 4285 1.948104 TTTGTCGGCCCGATTCATAG 58.052 50.000 10.04 0.00 38.42 2.23
4182 4286 0.531974 TTGTCGGCCCGATTCATAGC 60.532 55.000 10.04 0.00 38.42 2.97
4183 4287 1.367840 GTCGGCCCGATTCATAGCT 59.632 57.895 10.04 0.00 38.42 3.32
4184 4288 0.946221 GTCGGCCCGATTCATAGCTG 60.946 60.000 10.04 0.00 38.42 4.24
4185 4289 1.669115 CGGCCCGATTCATAGCTGG 60.669 63.158 0.00 0.00 0.00 4.85
4186 4290 1.302832 GGCCCGATTCATAGCTGGG 60.303 63.158 0.00 0.00 43.02 4.45
4187 4291 1.451936 GCCCGATTCATAGCTGGGT 59.548 57.895 0.00 0.00 42.10 4.51
4188 4292 0.886490 GCCCGATTCATAGCTGGGTG 60.886 60.000 0.00 0.00 42.10 4.61
4189 4293 0.758734 CCCGATTCATAGCTGGGTGA 59.241 55.000 0.00 0.00 35.05 4.02
4190 4294 1.270518 CCCGATTCATAGCTGGGTGAG 60.271 57.143 0.00 0.00 35.05 3.51
4191 4295 1.270518 CCGATTCATAGCTGGGTGAGG 60.271 57.143 0.00 0.00 0.00 3.86
4192 4296 1.270518 CGATTCATAGCTGGGTGAGGG 60.271 57.143 0.00 0.00 0.00 4.30
4193 4297 1.072965 GATTCATAGCTGGGTGAGGGG 59.927 57.143 0.00 0.00 0.00 4.79
4194 4298 0.988145 TTCATAGCTGGGTGAGGGGG 60.988 60.000 0.00 0.00 0.00 5.40
4195 4299 2.774351 ATAGCTGGGTGAGGGGGC 60.774 66.667 0.00 0.00 0.00 5.80
4216 4320 3.050275 GCCGAGCGCCCATATTCC 61.050 66.667 2.29 0.00 0.00 3.01
4217 4321 2.743718 CCGAGCGCCCATATTCCT 59.256 61.111 2.29 0.00 0.00 3.36
4218 4322 1.374758 CCGAGCGCCCATATTCCTC 60.375 63.158 2.29 0.00 0.00 3.71
4219 4323 1.734477 CGAGCGCCCATATTCCTCG 60.734 63.158 2.29 0.00 39.28 4.63
4220 4324 2.029844 GAGCGCCCATATTCCTCGC 61.030 63.158 2.29 0.00 45.34 5.03
4221 4325 3.050275 GCGCCCATATTCCTCGCC 61.050 66.667 0.00 0.00 39.91 5.54
4222 4326 2.743718 CGCCCATATTCCTCGCCT 59.256 61.111 0.00 0.00 0.00 5.52
4223 4327 1.071471 CGCCCATATTCCTCGCCTT 59.929 57.895 0.00 0.00 0.00 4.35
4224 4328 0.951040 CGCCCATATTCCTCGCCTTC 60.951 60.000 0.00 0.00 0.00 3.46
4225 4329 0.108585 GCCCATATTCCTCGCCTTCA 59.891 55.000 0.00 0.00 0.00 3.02
4226 4330 1.879796 GCCCATATTCCTCGCCTTCAG 60.880 57.143 0.00 0.00 0.00 3.02
4227 4331 1.517242 CCATATTCCTCGCCTTCAGC 58.483 55.000 0.00 0.00 38.52 4.26
4239 4343 1.666189 GCCTTCAGCGATTGTAACTCC 59.334 52.381 0.00 0.00 0.00 3.85
4240 4344 2.280628 CCTTCAGCGATTGTAACTCCC 58.719 52.381 0.00 0.00 0.00 4.30
4241 4345 1.927174 CTTCAGCGATTGTAACTCCCG 59.073 52.381 0.00 0.00 0.00 5.14
4242 4346 0.174845 TCAGCGATTGTAACTCCCGG 59.825 55.000 0.00 0.00 0.00 5.73
4243 4347 0.810031 CAGCGATTGTAACTCCCGGG 60.810 60.000 16.85 16.85 0.00 5.73
4244 4348 2.178235 GCGATTGTAACTCCCGGGC 61.178 63.158 18.49 0.73 0.00 6.13
4245 4349 1.219664 CGATTGTAACTCCCGGGCA 59.780 57.895 18.49 4.19 0.00 5.36
4246 4350 0.179056 CGATTGTAACTCCCGGGCAT 60.179 55.000 18.49 6.68 0.00 4.40
4247 4351 1.745827 CGATTGTAACTCCCGGGCATT 60.746 52.381 18.49 15.13 0.00 3.56
4248 4352 2.375146 GATTGTAACTCCCGGGCATTT 58.625 47.619 18.49 11.05 0.00 2.32
4249 4353 1.540267 TTGTAACTCCCGGGCATTTG 58.460 50.000 18.49 5.65 0.00 2.32
4250 4354 0.693622 TGTAACTCCCGGGCATTTGA 59.306 50.000 18.49 0.00 0.00 2.69
4251 4355 1.074084 TGTAACTCCCGGGCATTTGAA 59.926 47.619 18.49 0.00 0.00 2.69
4252 4356 2.164338 GTAACTCCCGGGCATTTGAAA 58.836 47.619 18.49 0.00 0.00 2.69
4253 4357 1.710816 AACTCCCGGGCATTTGAAAA 58.289 45.000 18.49 0.00 0.00 2.29
4254 4358 1.710816 ACTCCCGGGCATTTGAAAAA 58.289 45.000 18.49 0.00 0.00 1.94
4255 4359 2.256306 ACTCCCGGGCATTTGAAAAAT 58.744 42.857 18.49 0.00 0.00 1.82
4256 4360 2.028203 ACTCCCGGGCATTTGAAAAATG 60.028 45.455 18.49 8.09 0.00 2.32
4257 4361 1.974236 TCCCGGGCATTTGAAAAATGT 59.026 42.857 18.49 0.00 0.00 2.71
4258 4362 2.370189 TCCCGGGCATTTGAAAAATGTT 59.630 40.909 18.49 0.00 0.00 2.71
4259 4363 2.483491 CCCGGGCATTTGAAAAATGTTG 59.517 45.455 8.08 4.94 0.00 3.33
4260 4364 3.397482 CCGGGCATTTGAAAAATGTTGA 58.603 40.909 12.82 0.00 0.00 3.18
4261 4365 3.812053 CCGGGCATTTGAAAAATGTTGAA 59.188 39.130 12.82 0.00 0.00 2.69
4262 4366 4.319405 CCGGGCATTTGAAAAATGTTGAAC 60.319 41.667 12.82 0.00 0.00 3.18
4263 4367 4.272018 CGGGCATTTGAAAAATGTTGAACA 59.728 37.500 0.00 0.00 0.00 3.18
4264 4368 5.220739 CGGGCATTTGAAAAATGTTGAACAA 60.221 36.000 0.62 0.00 0.00 2.83
4265 4369 6.200808 GGGCATTTGAAAAATGTTGAACAAG 58.799 36.000 0.62 0.00 0.00 3.16
4266 4370 6.183360 GGGCATTTGAAAAATGTTGAACAAGT 60.183 34.615 0.62 0.00 0.00 3.16
4267 4371 7.011857 GGGCATTTGAAAAATGTTGAACAAGTA 59.988 33.333 0.62 0.00 0.00 2.24
4268 4372 8.558700 GGCATTTGAAAAATGTTGAACAAGTAT 58.441 29.630 0.62 0.00 0.00 2.12
4269 4373 9.934190 GCATTTGAAAAATGTTGAACAAGTATT 57.066 25.926 0.62 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.899437 GAGGGATCAAGCGGTGACCA 61.899 60.000 1.11 0.00 39.72 4.02
1 2 1.153349 GAGGGATCAAGCGGTGACC 60.153 63.158 0.00 0.00 39.72 4.02
2 3 0.179097 GAGAGGGATCAAGCGGTGAC 60.179 60.000 0.00 0.00 39.72 3.67
3 4 1.330655 GGAGAGGGATCAAGCGGTGA 61.331 60.000 0.00 0.00 41.67 4.02
4 5 1.144936 GGAGAGGGATCAAGCGGTG 59.855 63.158 0.00 0.00 0.00 4.94
5 6 2.066999 GGGAGAGGGATCAAGCGGT 61.067 63.158 0.00 0.00 0.00 5.68
6 7 2.812619 GGGGAGAGGGATCAAGCGG 61.813 68.421 0.00 0.00 0.00 5.52
7 8 1.764054 AGGGGAGAGGGATCAAGCG 60.764 63.158 0.00 0.00 0.00 4.68
8 9 1.835693 CAGGGGAGAGGGATCAAGC 59.164 63.158 0.00 0.00 0.00 4.01
9 10 0.984961 TGCAGGGGAGAGGGATCAAG 60.985 60.000 0.00 0.00 0.00 3.02
10 11 1.082766 TGCAGGGGAGAGGGATCAA 59.917 57.895 0.00 0.00 0.00 2.57
11 12 1.690633 GTGCAGGGGAGAGGGATCA 60.691 63.158 0.00 0.00 0.00 2.92
12 13 2.801631 CGTGCAGGGGAGAGGGATC 61.802 68.421 0.00 0.00 0.00 3.36
13 14 2.238319 TACGTGCAGGGGAGAGGGAT 62.238 60.000 11.67 0.00 0.00 3.85
14 15 2.238319 ATACGTGCAGGGGAGAGGGA 62.238 60.000 11.67 0.00 0.00 4.20
15 16 0.469331 TATACGTGCAGGGGAGAGGG 60.469 60.000 11.67 0.00 0.00 4.30
16 17 0.962489 CTATACGTGCAGGGGAGAGG 59.038 60.000 11.67 0.00 0.00 3.69
17 18 1.693627 ACTATACGTGCAGGGGAGAG 58.306 55.000 11.67 7.42 0.00 3.20
18 19 1.754803 CAACTATACGTGCAGGGGAGA 59.245 52.381 11.67 0.00 0.00 3.71
19 20 1.480954 ACAACTATACGTGCAGGGGAG 59.519 52.381 11.67 7.09 0.00 4.30
20 21 1.563924 ACAACTATACGTGCAGGGGA 58.436 50.000 11.67 0.00 0.00 4.81
21 22 3.746045 ATACAACTATACGTGCAGGGG 57.254 47.619 11.67 0.87 0.00 4.79
22 23 5.449107 AGTATACAACTATACGTGCAGGG 57.551 43.478 11.67 0.00 39.83 4.45
23 24 5.145059 CGAGTATACAACTATACGTGCAGG 58.855 45.833 4.53 4.53 39.83 4.85
24 25 5.745514 ACGAGTATACAACTATACGTGCAG 58.254 41.667 5.50 0.00 39.83 4.41
25 26 5.556947 CGACGAGTATACAACTATACGTGCA 60.557 44.000 5.50 0.00 39.83 4.57
26 27 4.837580 CGACGAGTATACAACTATACGTGC 59.162 45.833 5.50 0.00 39.83 5.34
27 28 4.837580 GCGACGAGTATACAACTATACGTG 59.162 45.833 5.50 0.00 39.83 4.49
28 29 4.747108 AGCGACGAGTATACAACTATACGT 59.253 41.667 5.50 0.00 39.83 3.57
29 30 5.071515 CAGCGACGAGTATACAACTATACG 58.928 45.833 5.50 3.11 39.83 3.06
30 31 5.983475 ACAGCGACGAGTATACAACTATAC 58.017 41.667 5.50 0.00 39.07 1.47
31 32 6.701400 TGTACAGCGACGAGTATACAACTATA 59.299 38.462 5.50 0.00 39.07 1.31
32 33 5.525012 TGTACAGCGACGAGTATACAACTAT 59.475 40.000 5.50 0.00 39.07 2.12
33 34 4.869861 TGTACAGCGACGAGTATACAACTA 59.130 41.667 5.50 0.00 39.07 2.24
34 35 3.686241 TGTACAGCGACGAGTATACAACT 59.314 43.478 5.50 0.00 42.80 3.16
35 36 4.007282 TGTACAGCGACGAGTATACAAC 57.993 45.455 5.50 0.00 0.00 3.32
36 37 4.683501 TTGTACAGCGACGAGTATACAA 57.316 40.909 5.50 4.80 31.82 2.41
37 38 4.683501 TTTGTACAGCGACGAGTATACA 57.316 40.909 5.50 0.00 0.00 2.29
38 39 5.091431 ACTTTTGTACAGCGACGAGTATAC 58.909 41.667 0.00 0.00 0.00 1.47
39 40 5.300969 ACTTTTGTACAGCGACGAGTATA 57.699 39.130 0.00 0.00 0.00 1.47
40 41 4.170292 ACTTTTGTACAGCGACGAGTAT 57.830 40.909 0.00 0.00 0.00 2.12
41 42 3.631145 ACTTTTGTACAGCGACGAGTA 57.369 42.857 0.00 0.00 0.00 2.59
42 43 2.503920 ACTTTTGTACAGCGACGAGT 57.496 45.000 0.00 0.00 0.00 4.18
43 44 2.096909 CCAACTTTTGTACAGCGACGAG 60.097 50.000 0.00 0.00 0.00 4.18
44 45 1.862201 CCAACTTTTGTACAGCGACGA 59.138 47.619 0.00 0.00 0.00 4.20
45 46 1.595794 ACCAACTTTTGTACAGCGACG 59.404 47.619 0.00 0.00 0.00 5.12
46 47 3.064271 TGAACCAACTTTTGTACAGCGAC 59.936 43.478 0.00 0.00 0.00 5.19
47 48 3.064271 GTGAACCAACTTTTGTACAGCGA 59.936 43.478 0.00 0.00 0.00 4.93
48 49 3.359654 GTGAACCAACTTTTGTACAGCG 58.640 45.455 0.00 0.00 0.00 5.18
49 50 3.702330 GGTGAACCAACTTTTGTACAGC 58.298 45.455 0.00 0.00 35.64 4.40
50 51 3.242936 CCGGTGAACCAACTTTTGTACAG 60.243 47.826 0.00 0.00 35.14 2.74
51 52 2.683867 CCGGTGAACCAACTTTTGTACA 59.316 45.455 0.00 0.00 35.14 2.90
52 53 2.944349 TCCGGTGAACCAACTTTTGTAC 59.056 45.455 0.00 0.00 35.14 2.90
53 54 3.207778 CTCCGGTGAACCAACTTTTGTA 58.792 45.455 0.00 0.00 35.14 2.41
54 55 2.021457 CTCCGGTGAACCAACTTTTGT 58.979 47.619 0.00 0.00 35.14 2.83
55 56 1.269051 GCTCCGGTGAACCAACTTTTG 60.269 52.381 7.92 0.00 35.14 2.44
56 57 1.029681 GCTCCGGTGAACCAACTTTT 58.970 50.000 7.92 0.00 35.14 2.27
57 58 0.822121 GGCTCCGGTGAACCAACTTT 60.822 55.000 7.92 0.00 35.14 2.66
58 59 1.228154 GGCTCCGGTGAACCAACTT 60.228 57.895 7.92 0.00 35.14 2.66
59 60 1.990160 TTGGCTCCGGTGAACCAACT 61.990 55.000 7.92 0.00 40.86 3.16
60 61 1.104577 TTTGGCTCCGGTGAACCAAC 61.105 55.000 16.17 0.00 44.39 3.77
61 62 0.821711 CTTTGGCTCCGGTGAACCAA 60.822 55.000 7.92 11.46 43.33 3.67
62 63 1.228124 CTTTGGCTCCGGTGAACCA 60.228 57.895 7.92 5.55 34.92 3.67
63 64 2.626780 GCTTTGGCTCCGGTGAACC 61.627 63.158 7.92 2.73 35.22 3.62
64 65 2.954611 GCTTTGGCTCCGGTGAAC 59.045 61.111 7.92 0.00 35.22 3.18
72 73 8.026478 GATCGATCGATCTTTAGCTTTGGCTC 62.026 46.154 38.45 17.08 44.79 4.70
73 74 6.303137 GATCGATCGATCTTTAGCTTTGGCT 61.303 44.000 38.45 12.84 46.85 4.75
74 75 3.123804 TCGATCGATCTTTAGCTTTGGC 58.876 45.455 22.43 0.00 39.06 4.52
75 76 5.508124 GATCGATCGATCTTTAGCTTTGG 57.492 43.478 38.45 3.79 45.42 3.28
96 97 0.826256 CTACCCCCACCGATGATCGA 60.826 60.000 17.52 0.00 43.74 3.59
104 105 0.035725 GGTTTTCTCTACCCCCACCG 60.036 60.000 0.00 0.00 0.00 4.94
113 114 5.335348 GGCTTTGTTTATGCGGTTTTCTCTA 60.335 40.000 0.00 0.00 0.00 2.43
260 277 4.869440 CTGAGAGGCGAGCCAGCG 62.869 72.222 17.18 0.00 38.92 5.18
299 316 1.198713 TTCAGGGAGAAGCTAGGCAG 58.801 55.000 0.00 0.00 0.00 4.85
302 319 4.027437 AGTAGTTTCAGGGAGAAGCTAGG 58.973 47.826 2.33 0.00 46.43 3.02
322 339 2.842496 TGATCCATGAGAGCTCCAAAGT 59.158 45.455 10.93 0.00 0.00 2.66
340 358 4.157289 CAGCTTAATCTGCCTTTGTGTGAT 59.843 41.667 0.00 0.00 0.00 3.06
367 385 4.208460 GTCAGTATGTGTGTGTGTGTACAC 59.792 45.833 19.36 19.36 46.93 2.90
429 461 2.859032 GCGAGAAGGAAGGTATACGCAG 60.859 54.545 0.00 0.00 43.35 5.18
430 462 1.066605 GCGAGAAGGAAGGTATACGCA 59.933 52.381 0.00 0.00 43.35 5.24
506 538 2.648059 CCAAATGTAGCTGGGAGGAAG 58.352 52.381 0.00 0.00 0.00 3.46
507 539 1.340991 GCCAAATGTAGCTGGGAGGAA 60.341 52.381 0.00 0.00 32.95 3.36
644 692 2.000447 GGCAGCAAGAAACTAGTACCG 59.000 52.381 0.00 0.00 0.00 4.02
689 737 1.517039 GCAAGCGTAAATGGCAGGC 60.517 57.895 0.00 0.00 0.00 4.85
716 764 4.764336 CAACAGTGGCATGCGGCG 62.764 66.667 12.44 0.51 46.16 6.46
718 766 3.367743 AGCAACAGTGGCATGCGG 61.368 61.111 12.44 3.64 44.60 5.69
719 767 2.126618 CAGCAACAGTGGCATGCG 60.127 61.111 12.44 0.00 44.60 4.73
720 768 1.080974 GTCAGCAACAGTGGCATGC 60.081 57.895 9.90 9.90 40.34 4.06
721 769 1.208358 CGTCAGCAACAGTGGCATG 59.792 57.895 1.78 0.00 0.00 4.06
722 770 1.227943 ACGTCAGCAACAGTGGCAT 60.228 52.632 1.78 0.00 0.00 4.40
723 771 2.179547 CACGTCAGCAACAGTGGCA 61.180 57.895 1.78 0.00 32.40 4.92
724 772 2.633657 CACGTCAGCAACAGTGGC 59.366 61.111 0.00 0.00 32.40 5.01
725 773 2.109538 CTGCACGTCAGCAACAGTGG 62.110 60.000 1.97 0.00 45.13 4.00
726 774 1.277739 CTGCACGTCAGCAACAGTG 59.722 57.895 1.97 0.00 45.13 3.66
727 775 1.889105 CCTGCACGTCAGCAACAGT 60.889 57.895 1.97 0.00 45.13 3.55
728 776 2.610694 CCCTGCACGTCAGCAACAG 61.611 63.158 1.97 0.00 45.13 3.16
729 777 2.591429 CCCTGCACGTCAGCAACA 60.591 61.111 1.97 0.00 45.13 3.33
730 778 4.030452 GCCCTGCACGTCAGCAAC 62.030 66.667 1.97 0.00 45.13 4.17
734 782 3.320879 ATCAGGCCCTGCACGTCAG 62.321 63.158 5.66 7.72 42.49 3.51
735 783 3.315142 GATCAGGCCCTGCACGTCA 62.315 63.158 5.66 0.00 0.00 4.35
736 784 2.512515 GATCAGGCCCTGCACGTC 60.513 66.667 5.66 0.00 0.00 4.34
737 785 4.457496 CGATCAGGCCCTGCACGT 62.457 66.667 5.66 0.00 0.00 4.49
738 786 4.147449 TCGATCAGGCCCTGCACG 62.147 66.667 18.38 18.38 33.84 5.34
739 787 2.512515 GTCGATCAGGCCCTGCAC 60.513 66.667 5.66 1.26 0.00 4.57
740 788 3.785859 GGTCGATCAGGCCCTGCA 61.786 66.667 5.66 0.00 39.18 4.41
741 789 3.746949 CTGGTCGATCAGGCCCTGC 62.747 68.421 18.34 0.00 46.38 4.85
742 790 2.025767 CTCTGGTCGATCAGGCCCTG 62.026 65.000 25.00 3.69 46.38 4.45
765 813 0.792640 CAAAGAGATTCGCAGCACGT 59.207 50.000 0.00 0.00 44.19 4.49
787 835 0.713883 CCAAGACGAACGGATCAACG 59.286 55.000 0.00 0.00 40.31 4.10
801 849 2.040278 CCACTCACCCAATCTTCCAAGA 59.960 50.000 0.00 0.00 39.78 3.02
806 854 1.351017 TGACCCACTCACCCAATCTTC 59.649 52.381 0.00 0.00 0.00 2.87
814 862 5.710099 TCATCTTAATTTTGACCCACTCACC 59.290 40.000 0.00 0.00 0.00 4.02
842 890 7.984050 ACAACACAATACAATTTCACCATTGAA 59.016 29.630 0.48 0.00 40.14 2.69
843 891 7.495901 ACAACACAATACAATTTCACCATTGA 58.504 30.769 0.48 0.00 37.55 2.57
844 892 7.712264 ACAACACAATACAATTTCACCATTG 57.288 32.000 0.00 0.00 39.67 2.82
859 907 8.637986 ACCATGAAACAAACTATACAACACAAT 58.362 29.630 0.00 0.00 0.00 2.71
862 910 7.422399 ACACCATGAAACAAACTATACAACAC 58.578 34.615 0.00 0.00 0.00 3.32
863 911 7.575414 ACACCATGAAACAAACTATACAACA 57.425 32.000 0.00 0.00 0.00 3.33
864 912 8.865590 AAACACCATGAAACAAACTATACAAC 57.134 30.769 0.00 0.00 0.00 3.32
869 917 9.405587 CGAATAAAACACCATGAAACAAACTAT 57.594 29.630 0.00 0.00 0.00 2.12
902 955 7.642669 CAAAACAGAGACAATAGACACACATT 58.357 34.615 0.00 0.00 0.00 2.71
913 968 3.228188 TCCCAGCAAAACAGAGACAAT 57.772 42.857 0.00 0.00 0.00 2.71
928 983 1.871418 TCTTCCTGTCTCCATCCCAG 58.129 55.000 0.00 0.00 0.00 4.45
943 998 2.535331 GTCTCAGCAGGTTCGATCTTC 58.465 52.381 0.00 0.00 0.00 2.87
944 999 1.135257 CGTCTCAGCAGGTTCGATCTT 60.135 52.381 0.00 0.00 0.00 2.40
945 1000 0.453793 CGTCTCAGCAGGTTCGATCT 59.546 55.000 0.00 0.00 0.00 2.75
978 1033 1.550524 CTTCCTCGATCACCTCAACCA 59.449 52.381 0.00 0.00 0.00 3.67
981 1036 2.231716 TCCTTCCTCGATCACCTCAA 57.768 50.000 0.00 0.00 0.00 3.02
993 1052 3.338250 TTGCCGCCCATCCTTCCT 61.338 61.111 0.00 0.00 0.00 3.36
994 1053 3.140814 GTTGCCGCCCATCCTTCC 61.141 66.667 0.00 0.00 0.00 3.46
995 1054 3.140814 GGTTGCCGCCCATCCTTC 61.141 66.667 0.00 0.00 31.74 3.46
996 1055 3.301222 ATGGTTGCCGCCCATCCTT 62.301 57.895 0.00 0.00 38.30 3.36
997 1056 3.743017 ATGGTTGCCGCCCATCCT 61.743 61.111 0.00 0.00 38.30 3.24
998 1057 3.530260 CATGGTTGCCGCCCATCC 61.530 66.667 0.00 0.00 40.76 3.51
1035 1094 0.033504 GGTTCGTGTCCTTGAGCTGA 59.966 55.000 0.00 0.00 0.00 4.26
1284 1343 4.954970 CGGTGCTTGGTGGTGCCT 62.955 66.667 0.00 0.00 38.35 4.75
1771 1866 1.242665 ACGACGGAGGTCTTGAGGAC 61.243 60.000 0.00 0.00 41.16 3.85
2502 2600 3.920196 ACGCGGTCGGTTTCCAGT 61.920 61.111 12.47 0.00 40.69 4.00
3087 3185 1.812093 CTCCTCGTCGAGCTCGTCT 60.812 63.158 33.33 0.00 40.80 4.18
3471 3572 0.108138 CCCGATCGAAGAACAAGCCT 60.108 55.000 18.66 0.00 43.58 4.58
3493 3594 8.703378 AAAAGAAAATCAGAAGTCTGGATTCT 57.297 30.769 8.42 11.63 43.91 2.40
3494 3595 9.404348 GAAAAAGAAAATCAGAAGTCTGGATTC 57.596 33.333 8.42 9.91 43.91 2.52
3495 3596 8.363390 GGAAAAAGAAAATCAGAAGTCTGGATT 58.637 33.333 8.42 4.77 43.91 3.01
3496 3597 7.506938 TGGAAAAAGAAAATCAGAAGTCTGGAT 59.493 33.333 8.42 0.00 43.91 3.41
3497 3598 6.833416 TGGAAAAAGAAAATCAGAAGTCTGGA 59.167 34.615 8.42 0.00 43.91 3.86
3498 3599 7.042797 TGGAAAAAGAAAATCAGAAGTCTGG 57.957 36.000 8.42 0.00 43.91 3.86
3499 3600 8.193438 ACTTGGAAAAAGAAAATCAGAAGTCTG 58.807 33.333 1.65 1.65 45.08 3.51
3500 3601 8.298729 ACTTGGAAAAAGAAAATCAGAAGTCT 57.701 30.769 0.00 0.00 0.00 3.24
3587 3688 2.752903 GTGTTCTCAAACCCACAGTGTT 59.247 45.455 0.00 0.00 34.28 3.32
3620 3721 7.082602 TCTTCTCGAGACAAACATAGTTACAC 58.917 38.462 16.36 0.00 0.00 2.90
3621 3722 7.210718 TCTTCTCGAGACAAACATAGTTACA 57.789 36.000 16.36 0.00 0.00 2.41
3622 3723 8.587950 CATTCTTCTCGAGACAAACATAGTTAC 58.412 37.037 16.36 0.00 33.02 2.50
3623 3724 7.759886 CCATTCTTCTCGAGACAAACATAGTTA 59.240 37.037 16.36 1.88 33.02 2.24
3624 3725 6.591834 CCATTCTTCTCGAGACAAACATAGTT 59.408 38.462 16.36 0.00 33.02 2.24
3625 3726 6.102663 CCATTCTTCTCGAGACAAACATAGT 58.897 40.000 16.36 0.00 33.02 2.12
3712 3816 8.985315 ATAGAAGATGTGAATTAGCAATTCCA 57.015 30.769 14.81 12.90 45.23 3.53
3733 3837 7.182206 ACCAAAGAAGGCCTAAGAACTTATAGA 59.818 37.037 5.16 0.00 0.00 1.98
3734 3838 7.339482 ACCAAAGAAGGCCTAAGAACTTATAG 58.661 38.462 5.16 3.04 0.00 1.31
3735 3839 7.266905 ACCAAAGAAGGCCTAAGAACTTATA 57.733 36.000 5.16 0.00 0.00 0.98
3736 3840 6.140968 ACCAAAGAAGGCCTAAGAACTTAT 57.859 37.500 5.16 0.00 0.00 1.73
3737 3841 5.578157 ACCAAAGAAGGCCTAAGAACTTA 57.422 39.130 5.16 0.00 0.00 2.24
3738 3842 4.455070 ACCAAAGAAGGCCTAAGAACTT 57.545 40.909 5.16 4.47 0.00 2.66
3739 3843 4.141251 TGAACCAAAGAAGGCCTAAGAACT 60.141 41.667 5.16 0.00 0.00 3.01
3740 3844 4.142038 TGAACCAAAGAAGGCCTAAGAAC 58.858 43.478 5.16 0.00 0.00 3.01
3741 3845 4.447138 TGAACCAAAGAAGGCCTAAGAA 57.553 40.909 5.16 0.00 0.00 2.52
3742 3846 4.657814 ATGAACCAAAGAAGGCCTAAGA 57.342 40.909 5.16 0.00 0.00 2.10
3743 3847 4.884164 CCTATGAACCAAAGAAGGCCTAAG 59.116 45.833 5.16 0.00 0.00 2.18
3744 3848 4.325030 CCCTATGAACCAAAGAAGGCCTAA 60.325 45.833 5.16 0.00 0.00 2.69
3745 3849 3.202151 CCCTATGAACCAAAGAAGGCCTA 59.798 47.826 5.16 0.00 0.00 3.93
3746 3850 2.024941 CCCTATGAACCAAAGAAGGCCT 60.025 50.000 0.00 0.00 0.00 5.19
3747 3851 2.291605 ACCCTATGAACCAAAGAAGGCC 60.292 50.000 0.00 0.00 0.00 5.19
3748 3852 3.087370 ACCCTATGAACCAAAGAAGGC 57.913 47.619 0.00 0.00 0.00 4.35
3749 3853 6.062258 TCTTACCCTATGAACCAAAGAAGG 57.938 41.667 0.00 0.00 0.00 3.46
3750 3854 7.996098 TTTCTTACCCTATGAACCAAAGAAG 57.004 36.000 0.00 0.00 34.17 2.85
3751 3855 8.950007 ATTTTCTTACCCTATGAACCAAAGAA 57.050 30.769 0.00 0.00 31.58 2.52
3752 3856 7.335924 CGATTTTCTTACCCTATGAACCAAAGA 59.664 37.037 0.00 0.00 0.00 2.52
3753 3857 7.120726 ACGATTTTCTTACCCTATGAACCAAAG 59.879 37.037 0.00 0.00 0.00 2.77
3754 3858 6.943718 ACGATTTTCTTACCCTATGAACCAAA 59.056 34.615 0.00 0.00 0.00 3.28
3755 3859 6.478129 ACGATTTTCTTACCCTATGAACCAA 58.522 36.000 0.00 0.00 0.00 3.67
3756 3860 6.057321 ACGATTTTCTTACCCTATGAACCA 57.943 37.500 0.00 0.00 0.00 3.67
3757 3861 6.704937 CCTACGATTTTCTTACCCTATGAACC 59.295 42.308 0.00 0.00 0.00 3.62
3758 3862 7.495055 TCCTACGATTTTCTTACCCTATGAAC 58.505 38.462 0.00 0.00 0.00 3.18
3759 3863 7.664552 TCCTACGATTTTCTTACCCTATGAA 57.335 36.000 0.00 0.00 0.00 2.57
3760 3864 7.664552 TTCCTACGATTTTCTTACCCTATGA 57.335 36.000 0.00 0.00 0.00 2.15
3761 3865 9.640963 CTATTCCTACGATTTTCTTACCCTATG 57.359 37.037 0.00 0.00 0.00 2.23
3762 3866 9.597681 TCTATTCCTACGATTTTCTTACCCTAT 57.402 33.333 0.00 0.00 0.00 2.57
3763 3867 9.425248 TTCTATTCCTACGATTTTCTTACCCTA 57.575 33.333 0.00 0.00 0.00 3.53
3764 3868 7.909485 TCTATTCCTACGATTTTCTTACCCT 57.091 36.000 0.00 0.00 0.00 4.34
3765 3869 8.953368 TTTCTATTCCTACGATTTTCTTACCC 57.047 34.615 0.00 0.00 0.00 3.69
3769 3873 9.720769 TGACTTTTCTATTCCTACGATTTTCTT 57.279 29.630 0.00 0.00 0.00 2.52
3770 3874 9.892130 ATGACTTTTCTATTCCTACGATTTTCT 57.108 29.630 0.00 0.00 0.00 2.52
3773 3877 9.765795 CCTATGACTTTTCTATTCCTACGATTT 57.234 33.333 0.00 0.00 0.00 2.17
3774 3878 9.144298 TCCTATGACTTTTCTATTCCTACGATT 57.856 33.333 0.00 0.00 0.00 3.34
3775 3879 8.707796 TCCTATGACTTTTCTATTCCTACGAT 57.292 34.615 0.00 0.00 0.00 3.73
3776 3880 8.529424 TTCCTATGACTTTTCTATTCCTACGA 57.471 34.615 0.00 0.00 0.00 3.43
3777 3881 9.765795 ATTTCCTATGACTTTTCTATTCCTACG 57.234 33.333 0.00 0.00 0.00 3.51
3780 3884 9.844257 CTCATTTCCTATGACTTTTCTATTCCT 57.156 33.333 0.00 0.00 0.00 3.36
3781 3885 9.838339 TCTCATTTCCTATGACTTTTCTATTCC 57.162 33.333 0.00 0.00 0.00 3.01
3785 3889 9.823647 GTCATCTCATTTCCTATGACTTTTCTA 57.176 33.333 0.00 0.00 43.07 2.10
3786 3890 8.324306 TGTCATCTCATTTCCTATGACTTTTCT 58.676 33.333 13.59 0.00 45.40 2.52
3787 3891 8.498054 TGTCATCTCATTTCCTATGACTTTTC 57.502 34.615 13.59 0.00 45.40 2.29
3788 3892 8.900781 CATGTCATCTCATTTCCTATGACTTTT 58.099 33.333 13.59 0.00 45.40 2.27
3789 3893 8.051535 ACATGTCATCTCATTTCCTATGACTTT 58.948 33.333 13.59 1.75 45.40 2.66
3790 3894 7.571919 ACATGTCATCTCATTTCCTATGACTT 58.428 34.615 13.59 6.42 45.40 3.01
3791 3895 7.134362 ACATGTCATCTCATTTCCTATGACT 57.866 36.000 13.59 0.19 45.40 3.41
3792 3896 9.149225 GATACATGTCATCTCATTTCCTATGAC 57.851 37.037 0.00 7.23 45.40 3.06
3793 3897 9.097946 AGATACATGTCATCTCATTTCCTATGA 57.902 33.333 0.00 0.00 0.00 2.15
3794 3898 9.368674 GAGATACATGTCATCTCATTTCCTATG 57.631 37.037 24.95 0.00 45.17 2.23
3804 3908 9.368674 CATAGGATTTGAGATACATGTCATCTC 57.631 37.037 24.04 24.04 45.76 2.75
3805 3909 9.097946 TCATAGGATTTGAGATACATGTCATCT 57.902 33.333 0.00 9.42 35.43 2.90
3806 3910 9.368674 CTCATAGGATTTGAGATACATGTCATC 57.631 37.037 0.00 4.47 42.63 2.92
3807 3911 8.878211 ACTCATAGGATTTGAGATACATGTCAT 58.122 33.333 0.00 0.00 42.63 3.06
3808 3912 8.255111 ACTCATAGGATTTGAGATACATGTCA 57.745 34.615 0.00 0.00 42.63 3.58
3809 3913 9.853555 CTACTCATAGGATTTGAGATACATGTC 57.146 37.037 0.00 0.00 42.63 3.06
3810 3914 9.593565 TCTACTCATAGGATTTGAGATACATGT 57.406 33.333 2.69 2.69 42.63 3.21
3817 3921 9.883293 TCCTATTTCTACTCATAGGATTTGAGA 57.117 33.333 7.63 0.00 44.16 3.27
3822 3926 9.676129 TCCTTTCCTATTTCTACTCATAGGATT 57.324 33.333 8.42 0.00 46.91 3.01
3823 3927 9.320295 CTCCTTTCCTATTTCTACTCATAGGAT 57.680 37.037 8.42 0.00 46.91 3.24
3824 3928 8.511969 TCTCCTTTCCTATTTCTACTCATAGGA 58.488 37.037 4.13 4.13 46.34 2.94
3825 3929 8.713708 TCTCCTTTCCTATTTCTACTCATAGG 57.286 38.462 0.00 0.00 42.52 2.57
3827 3931 8.589338 GCATCTCCTTTCCTATTTCTACTCATA 58.411 37.037 0.00 0.00 0.00 2.15
3828 3932 7.449247 GCATCTCCTTTCCTATTTCTACTCAT 58.551 38.462 0.00 0.00 0.00 2.90
3829 3933 6.183361 GGCATCTCCTTTCCTATTTCTACTCA 60.183 42.308 0.00 0.00 0.00 3.41
3830 3934 6.227522 GGCATCTCCTTTCCTATTTCTACTC 58.772 44.000 0.00 0.00 0.00 2.59
3831 3935 5.072464 GGGCATCTCCTTTCCTATTTCTACT 59.928 44.000 0.00 0.00 34.39 2.57
3832 3936 5.072464 AGGGCATCTCCTTTCCTATTTCTAC 59.928 44.000 0.00 0.00 32.13 2.59
3833 3937 5.227593 AGGGCATCTCCTTTCCTATTTCTA 58.772 41.667 0.00 0.00 32.13 2.10
3834 3938 4.050757 AGGGCATCTCCTTTCCTATTTCT 58.949 43.478 0.00 0.00 32.13 2.52
3835 3939 4.445557 AGGGCATCTCCTTTCCTATTTC 57.554 45.455 0.00 0.00 32.13 2.17
3836 3940 4.888626 AAGGGCATCTCCTTTCCTATTT 57.111 40.909 0.00 0.00 44.14 1.40
3845 3949 4.591321 TGTGAATTAAAGGGCATCTCCT 57.409 40.909 0.00 0.00 39.17 3.69
3846 3950 4.889409 TGATGTGAATTAAAGGGCATCTCC 59.111 41.667 0.00 0.00 35.22 3.71
3847 3951 6.645790 ATGATGTGAATTAAAGGGCATCTC 57.354 37.500 0.00 0.00 35.22 2.75
3848 3952 6.718454 CCTATGATGTGAATTAAAGGGCATCT 59.282 38.462 0.00 0.00 35.22 2.90
3849 3953 6.716628 TCCTATGATGTGAATTAAAGGGCATC 59.283 38.462 0.00 0.00 34.88 3.91
3850 3954 6.613699 TCCTATGATGTGAATTAAAGGGCAT 58.386 36.000 0.00 0.00 0.00 4.40
3851 3955 6.012337 TCCTATGATGTGAATTAAAGGGCA 57.988 37.500 0.00 0.00 0.00 5.36
3852 3956 7.530426 AATCCTATGATGTGAATTAAAGGGC 57.470 36.000 0.00 0.00 0.00 5.19
3876 3980 9.959721 AACATTAGCCTAGACTCAATAGAAAAA 57.040 29.630 0.00 0.00 0.00 1.94
3877 3981 9.959721 AAACATTAGCCTAGACTCAATAGAAAA 57.040 29.630 0.00 0.00 0.00 2.29
3884 3988 9.174166 GGAAAATAAACATTAGCCTAGACTCAA 57.826 33.333 0.00 0.00 0.00 3.02
3885 3989 8.548877 AGGAAAATAAACATTAGCCTAGACTCA 58.451 33.333 0.00 0.00 0.00 3.41
3886 3990 8.966069 AGGAAAATAAACATTAGCCTAGACTC 57.034 34.615 0.00 0.00 0.00 3.36
3905 4009 9.405369 TCCTATCCTCCATATTTCATAGGAAAA 57.595 33.333 6.65 0.00 45.52 2.29
3906 4010 8.989045 TCCTATCCTCCATATTTCATAGGAAA 57.011 34.615 4.85 4.85 46.36 3.13
3907 4011 8.989045 TTCCTATCCTCCATATTTCATAGGAA 57.011 34.615 12.28 12.28 44.92 3.36
3908 4012 8.409825 TCTTCCTATCCTCCATATTTCATAGGA 58.590 37.037 2.01 2.01 39.98 2.94
3909 4013 8.615360 TCTTCCTATCCTCCATATTTCATAGG 57.385 38.462 0.00 0.00 35.93 2.57
3912 4016 9.972106 GAATTCTTCCTATCCTCCATATTTCAT 57.028 33.333 0.00 0.00 0.00 2.57
3913 4017 8.386264 GGAATTCTTCCTATCCTCCATATTTCA 58.614 37.037 5.23 0.00 46.57 2.69
3914 4018 8.800370 GGAATTCTTCCTATCCTCCATATTTC 57.200 38.462 5.23 0.00 46.57 2.17
3937 4041 7.037297 GGAATGGAATCCTATTCCTATGAAGGA 60.037 40.741 23.95 0.00 45.66 3.36
3938 4042 7.115414 GGAATGGAATCCTATTCCTATGAAGG 58.885 42.308 23.95 0.00 45.66 3.46
3952 4056 5.105351 CCTTTGGTTTGTAGGAATGGAATCC 60.105 44.000 0.00 0.00 39.96 3.01
3953 4057 5.105351 CCCTTTGGTTTGTAGGAATGGAATC 60.105 44.000 0.00 0.00 0.00 2.52
3954 4058 4.777366 CCCTTTGGTTTGTAGGAATGGAAT 59.223 41.667 0.00 0.00 0.00 3.01
3955 4059 4.156477 CCCTTTGGTTTGTAGGAATGGAA 58.844 43.478 0.00 0.00 0.00 3.53
3956 4060 3.773560 CCCTTTGGTTTGTAGGAATGGA 58.226 45.455 0.00 0.00 0.00 3.41
3957 4061 2.233676 GCCCTTTGGTTTGTAGGAATGG 59.766 50.000 0.00 0.00 0.00 3.16
3958 4062 3.165071 AGCCCTTTGGTTTGTAGGAATG 58.835 45.455 0.00 0.00 0.00 2.67
3959 4063 3.076032 AGAGCCCTTTGGTTTGTAGGAAT 59.924 43.478 0.00 0.00 0.00 3.01
3960 4064 2.445525 AGAGCCCTTTGGTTTGTAGGAA 59.554 45.455 0.00 0.00 0.00 3.36
3961 4065 2.062636 AGAGCCCTTTGGTTTGTAGGA 58.937 47.619 0.00 0.00 0.00 2.94
3962 4066 2.586648 AGAGCCCTTTGGTTTGTAGG 57.413 50.000 0.00 0.00 0.00 3.18
3963 4067 5.313712 TCTTTAGAGCCCTTTGGTTTGTAG 58.686 41.667 0.00 0.00 0.00 2.74
3964 4068 5.313280 TCTTTAGAGCCCTTTGGTTTGTA 57.687 39.130 0.00 0.00 0.00 2.41
3965 4069 4.178956 TCTTTAGAGCCCTTTGGTTTGT 57.821 40.909 0.00 0.00 0.00 2.83
3966 4070 5.529581 TTTCTTTAGAGCCCTTTGGTTTG 57.470 39.130 0.00 0.00 0.00 2.93
3967 4071 6.747414 AATTTCTTTAGAGCCCTTTGGTTT 57.253 33.333 0.00 0.00 0.00 3.27
3968 4072 6.747414 AAATTTCTTTAGAGCCCTTTGGTT 57.253 33.333 0.00 0.00 0.00 3.67
3969 4073 6.747414 AAAATTTCTTTAGAGCCCTTTGGT 57.253 33.333 0.00 0.00 0.00 3.67
4022 4126 9.803315 GCCTCCTTTGGTTTAGAAATTTTATAG 57.197 33.333 0.00 0.00 0.00 1.31
4023 4127 8.755028 GGCCTCCTTTGGTTTAGAAATTTTATA 58.245 33.333 0.00 0.00 0.00 0.98
4024 4128 7.578763 CGGCCTCCTTTGGTTTAGAAATTTTAT 60.579 37.037 0.00 0.00 0.00 1.40
4025 4129 6.294843 CGGCCTCCTTTGGTTTAGAAATTTTA 60.295 38.462 0.00 0.00 0.00 1.52
4026 4130 5.510690 CGGCCTCCTTTGGTTTAGAAATTTT 60.511 40.000 0.00 0.00 0.00 1.82
4027 4131 4.021456 CGGCCTCCTTTGGTTTAGAAATTT 60.021 41.667 0.00 0.00 0.00 1.82
4028 4132 3.509967 CGGCCTCCTTTGGTTTAGAAATT 59.490 43.478 0.00 0.00 0.00 1.82
4029 4133 3.089284 CGGCCTCCTTTGGTTTAGAAAT 58.911 45.455 0.00 0.00 0.00 2.17
4030 4134 2.510613 CGGCCTCCTTTGGTTTAGAAA 58.489 47.619 0.00 0.00 0.00 2.52
4031 4135 1.884928 GCGGCCTCCTTTGGTTTAGAA 60.885 52.381 0.00 0.00 0.00 2.10
4032 4136 0.322187 GCGGCCTCCTTTGGTTTAGA 60.322 55.000 0.00 0.00 0.00 2.10
4033 4137 1.313091 GGCGGCCTCCTTTGGTTTAG 61.313 60.000 12.87 0.00 0.00 1.85
4034 4138 1.303806 GGCGGCCTCCTTTGGTTTA 60.304 57.895 12.87 0.00 0.00 2.01
4035 4139 2.600470 GGCGGCCTCCTTTGGTTT 60.600 61.111 12.87 0.00 0.00 3.27
4036 4140 2.730129 AATGGCGGCCTCCTTTGGTT 62.730 55.000 21.46 0.00 0.00 3.67
4037 4141 3.224007 AATGGCGGCCTCCTTTGGT 62.224 57.895 21.46 0.00 0.00 3.67
4038 4142 2.362889 AATGGCGGCCTCCTTTGG 60.363 61.111 21.46 0.00 0.00 3.28
4039 4143 2.713967 CCAATGGCGGCCTCCTTTG 61.714 63.158 26.13 26.13 39.57 2.77
4040 4144 2.228841 ATCCAATGGCGGCCTCCTTT 62.229 55.000 21.46 10.39 0.00 3.11
4041 4145 1.352622 TATCCAATGGCGGCCTCCTT 61.353 55.000 21.46 3.35 0.00 3.36
4042 4146 1.136329 ATATCCAATGGCGGCCTCCT 61.136 55.000 21.46 1.78 0.00 3.69
4043 4147 0.618458 TATATCCAATGGCGGCCTCC 59.382 55.000 21.46 4.25 0.00 4.30
4044 4148 1.003118 TGTATATCCAATGGCGGCCTC 59.997 52.381 21.46 0.00 0.00 4.70
4045 4149 1.064003 TGTATATCCAATGGCGGCCT 58.936 50.000 21.46 2.61 0.00 5.19
4046 4150 1.745087 CATGTATATCCAATGGCGGCC 59.255 52.381 13.32 13.32 0.00 6.13
4047 4151 2.436417 ACATGTATATCCAATGGCGGC 58.564 47.619 0.00 0.00 0.00 6.53
4048 4152 3.820467 ACAACATGTATATCCAATGGCGG 59.180 43.478 0.00 0.00 0.00 6.13
4049 4153 6.552859 TTACAACATGTATATCCAATGGCG 57.447 37.500 0.00 0.00 32.20 5.69
4050 4154 9.762933 AAATTTACAACATGTATATCCAATGGC 57.237 29.630 0.00 0.00 32.20 4.40
4054 4158 9.995957 CACGAAATTTACAACATGTATATCCAA 57.004 29.630 0.00 0.00 32.20 3.53
4055 4159 8.126074 GCACGAAATTTACAACATGTATATCCA 58.874 33.333 0.00 0.00 32.20 3.41
4056 4160 8.126074 TGCACGAAATTTACAACATGTATATCC 58.874 33.333 0.00 0.00 32.20 2.59
4057 4161 9.497030 TTGCACGAAATTTACAACATGTATATC 57.503 29.630 0.00 0.00 32.20 1.63
4058 4162 9.847706 TTTGCACGAAATTTACAACATGTATAT 57.152 25.926 0.00 0.00 32.20 0.86
4059 4163 9.119329 GTTTGCACGAAATTTACAACATGTATA 57.881 29.630 0.00 0.00 32.20 1.47
4060 4164 7.649705 TGTTTGCACGAAATTTACAACATGTAT 59.350 29.630 0.00 0.00 32.20 2.29
4061 4165 6.972901 TGTTTGCACGAAATTTACAACATGTA 59.027 30.769 0.00 0.00 0.00 2.29
4062 4166 5.807520 TGTTTGCACGAAATTTACAACATGT 59.192 32.000 0.00 0.00 0.00 3.21
4063 4167 6.266203 TGTTTGCACGAAATTTACAACATG 57.734 33.333 0.00 0.00 0.00 3.21
4064 4168 6.145371 GGATGTTTGCACGAAATTTACAACAT 59.855 34.615 5.92 5.92 0.00 2.71
4065 4169 5.460419 GGATGTTTGCACGAAATTTACAACA 59.540 36.000 0.00 0.00 0.00 3.33
4066 4170 5.460419 TGGATGTTTGCACGAAATTTACAAC 59.540 36.000 0.00 0.00 0.00 3.32
4067 4171 5.592054 TGGATGTTTGCACGAAATTTACAA 58.408 33.333 0.00 0.00 0.00 2.41
4068 4172 5.188327 TGGATGTTTGCACGAAATTTACA 57.812 34.783 0.00 0.00 0.00 2.41
4069 4173 7.915397 AGATATGGATGTTTGCACGAAATTTAC 59.085 33.333 0.00 0.00 0.00 2.01
4070 4174 7.914871 CAGATATGGATGTTTGCACGAAATTTA 59.085 33.333 0.00 0.00 0.00 1.40
4071 4175 6.753279 CAGATATGGATGTTTGCACGAAATTT 59.247 34.615 0.00 0.00 0.00 1.82
4072 4176 6.267817 CAGATATGGATGTTTGCACGAAATT 58.732 36.000 0.00 0.00 0.00 1.82
4073 4177 5.221106 CCAGATATGGATGTTTGCACGAAAT 60.221 40.000 0.00 0.00 0.00 2.17
4074 4178 4.096231 CCAGATATGGATGTTTGCACGAAA 59.904 41.667 0.00 0.00 0.00 3.46
4075 4179 3.627123 CCAGATATGGATGTTTGCACGAA 59.373 43.478 0.00 0.00 0.00 3.85
4076 4180 3.118445 TCCAGATATGGATGTTTGCACGA 60.118 43.478 4.55 0.00 32.09 4.35
4077 4181 3.205338 TCCAGATATGGATGTTTGCACG 58.795 45.455 4.55 0.00 32.09 5.34
4078 4182 4.202441 ACTCCAGATATGGATGTTTGCAC 58.798 43.478 10.06 0.00 37.34 4.57
4079 4183 4.508551 ACTCCAGATATGGATGTTTGCA 57.491 40.909 10.06 0.00 37.34 4.08
4080 4184 4.498682 GCAACTCCAGATATGGATGTTTGC 60.499 45.833 23.72 23.72 39.10 3.68
4081 4185 4.260907 CGCAACTCCAGATATGGATGTTTG 60.261 45.833 10.06 13.89 37.34 2.93
4082 4186 3.879295 CGCAACTCCAGATATGGATGTTT 59.121 43.478 10.06 0.93 37.34 2.83
4083 4187 3.118261 ACGCAACTCCAGATATGGATGTT 60.118 43.478 10.06 12.94 37.34 2.71
4084 4188 2.435805 ACGCAACTCCAGATATGGATGT 59.564 45.455 10.06 7.53 37.34 3.06
4085 4189 3.117491 ACGCAACTCCAGATATGGATG 57.883 47.619 10.06 7.58 37.34 3.51
4086 4190 3.845781 AACGCAACTCCAGATATGGAT 57.154 42.857 10.06 0.00 37.34 3.41
4087 4191 3.627395 AAACGCAACTCCAGATATGGA 57.373 42.857 9.14 9.14 36.40 3.41
4088 4192 4.701956 AAAAACGCAACTCCAGATATGG 57.298 40.909 0.00 0.00 0.00 2.74
4106 4210 1.064946 CGGGAGCGCACAACAAAAA 59.935 52.632 11.47 0.00 0.00 1.94
4107 4211 2.115911 ACGGGAGCGCACAACAAAA 61.116 52.632 11.47 0.00 0.00 2.44
4108 4212 2.515057 ACGGGAGCGCACAACAAA 60.515 55.556 11.47 0.00 0.00 2.83
4109 4213 3.276091 CACGGGAGCGCACAACAA 61.276 61.111 11.47 0.00 0.00 2.83
4122 4226 2.999363 GCCAACAAAACGAGGCACGG 62.999 60.000 9.53 0.00 46.26 4.94
4123 4227 1.657181 GCCAACAAAACGAGGCACG 60.657 57.895 1.94 1.94 46.26 5.34
4124 4228 4.319249 GCCAACAAAACGAGGCAC 57.681 55.556 0.00 0.00 46.26 5.01
4126 4230 1.007387 CAGGCCAACAAAACGAGGC 60.007 57.895 5.01 0.00 46.28 4.70
4127 4231 1.106944 ACCAGGCCAACAAAACGAGG 61.107 55.000 5.01 0.00 0.00 4.63
4128 4232 0.744281 AACCAGGCCAACAAAACGAG 59.256 50.000 5.01 0.00 0.00 4.18
4129 4233 1.187087 AAACCAGGCCAACAAAACGA 58.813 45.000 5.01 0.00 0.00 3.85
4130 4234 2.017138 AAAACCAGGCCAACAAAACG 57.983 45.000 5.01 0.00 0.00 3.60
4131 4235 3.605634 AGAAAAACCAGGCCAACAAAAC 58.394 40.909 5.01 0.00 0.00 2.43
4132 4236 3.990959 AGAAAAACCAGGCCAACAAAA 57.009 38.095 5.01 0.00 0.00 2.44
4133 4237 3.990959 AAGAAAAACCAGGCCAACAAA 57.009 38.095 5.01 0.00 0.00 2.83
4134 4238 3.990959 AAAGAAAAACCAGGCCAACAA 57.009 38.095 5.01 0.00 0.00 2.83
4135 4239 3.990959 AAAAGAAAAACCAGGCCAACA 57.009 38.095 5.01 0.00 0.00 3.33
4153 4257 1.202428 CGGGCCGACAAAAAGGAAAAA 60.202 47.619 24.41 0.00 0.00 1.94
4154 4258 0.386113 CGGGCCGACAAAAAGGAAAA 59.614 50.000 24.41 0.00 0.00 2.29
4155 4259 0.465824 TCGGGCCGACAAAAAGGAAA 60.466 50.000 27.46 0.00 0.00 3.13
4156 4260 0.250989 ATCGGGCCGACAAAAAGGAA 60.251 50.000 33.71 4.63 39.18 3.36
4157 4261 0.250989 AATCGGGCCGACAAAAAGGA 60.251 50.000 33.71 5.54 39.18 3.36
4158 4262 0.170339 GAATCGGGCCGACAAAAAGG 59.830 55.000 33.71 0.00 39.18 3.11
4159 4263 0.878416 TGAATCGGGCCGACAAAAAG 59.122 50.000 33.71 0.00 39.18 2.27
4160 4264 1.540267 ATGAATCGGGCCGACAAAAA 58.460 45.000 33.71 15.70 39.18 1.94
4161 4265 2.285083 CTATGAATCGGGCCGACAAAA 58.715 47.619 33.71 17.63 39.18 2.44
4162 4266 1.948104 CTATGAATCGGGCCGACAAA 58.052 50.000 33.71 19.60 39.18 2.83
4163 4267 0.531974 GCTATGAATCGGGCCGACAA 60.532 55.000 33.71 20.00 39.18 3.18
4164 4268 1.069090 GCTATGAATCGGGCCGACA 59.931 57.895 33.71 25.85 39.18 4.35
4165 4269 0.946221 CAGCTATGAATCGGGCCGAC 60.946 60.000 33.71 20.51 39.18 4.79
4166 4270 1.367471 CAGCTATGAATCGGGCCGA 59.633 57.895 33.10 33.10 41.13 5.54
4167 4271 1.669115 CCAGCTATGAATCGGGCCG 60.669 63.158 22.51 22.51 0.00 6.13
4168 4272 1.302832 CCCAGCTATGAATCGGGCC 60.303 63.158 0.00 0.00 0.00 5.80
4169 4273 0.886490 CACCCAGCTATGAATCGGGC 60.886 60.000 2.98 0.00 40.87 6.13
4170 4274 0.758734 TCACCCAGCTATGAATCGGG 59.241 55.000 1.53 1.53 43.02 5.14
4171 4275 1.270518 CCTCACCCAGCTATGAATCGG 60.271 57.143 0.00 0.00 0.00 4.18
4172 4276 1.270518 CCCTCACCCAGCTATGAATCG 60.271 57.143 0.00 0.00 0.00 3.34
4173 4277 1.072965 CCCCTCACCCAGCTATGAATC 59.927 57.143 0.00 0.00 0.00 2.52
4174 4278 1.143813 CCCCTCACCCAGCTATGAAT 58.856 55.000 0.00 0.00 0.00 2.57
4175 4279 0.988145 CCCCCTCACCCAGCTATGAA 60.988 60.000 0.00 0.00 0.00 2.57
4176 4280 1.384502 CCCCCTCACCCAGCTATGA 60.385 63.158 0.00 0.00 0.00 2.15
4177 4281 3.125376 GCCCCCTCACCCAGCTATG 62.125 68.421 0.00 0.00 0.00 2.23
4178 4282 2.774351 GCCCCCTCACCCAGCTAT 60.774 66.667 0.00 0.00 0.00 2.97
4199 4303 3.050275 GGAATATGGGCGCTCGGC 61.050 66.667 7.64 7.33 42.51 5.54
4200 4304 1.374758 GAGGAATATGGGCGCTCGG 60.375 63.158 7.64 0.00 0.00 4.63
4201 4305 1.734477 CGAGGAATATGGGCGCTCG 60.734 63.158 7.64 0.61 0.00 5.03
4202 4306 2.029844 GCGAGGAATATGGGCGCTC 61.030 63.158 7.64 2.47 43.85 5.03
4203 4307 2.031163 GCGAGGAATATGGGCGCT 59.969 61.111 7.64 0.00 43.85 5.92
4204 4308 3.050275 GGCGAGGAATATGGGCGC 61.050 66.667 0.00 0.00 46.20 6.53
4205 4309 0.951040 GAAGGCGAGGAATATGGGCG 60.951 60.000 0.00 0.00 0.00 6.13
4206 4310 0.108585 TGAAGGCGAGGAATATGGGC 59.891 55.000 0.00 0.00 0.00 5.36
4207 4311 1.879796 GCTGAAGGCGAGGAATATGGG 60.880 57.143 0.00 0.00 0.00 4.00
4208 4312 1.517242 GCTGAAGGCGAGGAATATGG 58.483 55.000 0.00 0.00 0.00 2.74
4219 4323 1.666189 GGAGTTACAATCGCTGAAGGC 59.334 52.381 0.00 0.00 37.64 4.35
4220 4324 2.280628 GGGAGTTACAATCGCTGAAGG 58.719 52.381 0.00 0.00 0.00 3.46
4221 4325 1.927174 CGGGAGTTACAATCGCTGAAG 59.073 52.381 0.00 0.00 0.00 3.02
4222 4326 1.404986 CCGGGAGTTACAATCGCTGAA 60.405 52.381 0.00 0.00 0.00 3.02
4223 4327 0.174845 CCGGGAGTTACAATCGCTGA 59.825 55.000 0.00 0.00 0.00 4.26
4224 4328 0.810031 CCCGGGAGTTACAATCGCTG 60.810 60.000 18.48 0.00 0.00 5.18
4225 4329 1.520666 CCCGGGAGTTACAATCGCT 59.479 57.895 18.48 0.00 0.00 4.93
4226 4330 2.178235 GCCCGGGAGTTACAATCGC 61.178 63.158 29.31 0.00 0.00 4.58
4227 4331 0.179056 ATGCCCGGGAGTTACAATCG 60.179 55.000 29.31 0.00 0.00 3.34
4228 4332 2.052782 AATGCCCGGGAGTTACAATC 57.947 50.000 29.31 2.71 0.00 2.67
4229 4333 2.099405 CAAATGCCCGGGAGTTACAAT 58.901 47.619 29.31 1.31 0.00 2.71
4230 4334 1.074084 TCAAATGCCCGGGAGTTACAA 59.926 47.619 29.31 0.00 0.00 2.41
4231 4335 0.693622 TCAAATGCCCGGGAGTTACA 59.306 50.000 29.31 13.31 0.00 2.41
4232 4336 1.828979 TTCAAATGCCCGGGAGTTAC 58.171 50.000 29.31 6.34 0.00 2.50
4233 4337 2.588464 TTTCAAATGCCCGGGAGTTA 57.412 45.000 29.31 7.23 0.00 2.24
4234 4338 1.710816 TTTTCAAATGCCCGGGAGTT 58.289 45.000 29.31 15.48 0.00 3.01
4235 4339 1.710816 TTTTTCAAATGCCCGGGAGT 58.289 45.000 29.31 8.83 0.00 3.85
4236 4340 2.028203 ACATTTTTCAAATGCCCGGGAG 60.028 45.455 29.31 7.91 0.00 4.30
4237 4341 1.974236 ACATTTTTCAAATGCCCGGGA 59.026 42.857 29.31 10.35 0.00 5.14
4238 4342 2.470983 ACATTTTTCAAATGCCCGGG 57.529 45.000 19.09 19.09 0.00 5.73
4239 4343 3.397482 TCAACATTTTTCAAATGCCCGG 58.603 40.909 8.77 0.00 0.00 5.73
4240 4344 4.272018 TGTTCAACATTTTTCAAATGCCCG 59.728 37.500 8.77 0.00 0.00 6.13
4241 4345 5.747951 TGTTCAACATTTTTCAAATGCCC 57.252 34.783 8.77 0.00 0.00 5.36
4242 4346 6.784176 ACTTGTTCAACATTTTTCAAATGCC 58.216 32.000 8.77 0.00 0.00 4.40
4243 4347 9.934190 AATACTTGTTCAACATTTTTCAAATGC 57.066 25.926 8.77 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.