Multiple sequence alignment - TraesCS7D01G396400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G396400 chr7D 100.000 3101 0 0 1 3101 511187574 511190674 0.000000e+00 5727.0
1 TraesCS7D01G396400 chr7D 83.092 692 106 8 1425 2110 511168668 511167982 1.220000e-173 619.0
2 TraesCS7D01G396400 chr7D 95.349 258 12 0 2745 3002 578387861 578388118 8.000000e-111 411.0
3 TraesCS7D01G396400 chr7A 95.879 2621 89 7 37 2655 582406538 582409141 0.000000e+00 4224.0
4 TraesCS7D01G396400 chr7A 79.805 1129 183 27 1008 2109 582406969 582405859 0.000000e+00 780.0
5 TraesCS7D01G396400 chr7A 95.076 264 12 1 2743 3005 27741516 27741253 6.190000e-112 414.0
6 TraesCS7D01G396400 chr7B 96.896 2126 43 6 37 2140 539989288 539991412 0.000000e+00 3539.0
7 TraesCS7D01G396400 chr7B 93.064 519 22 4 2135 2653 539995882 539996386 0.000000e+00 747.0
8 TraesCS7D01G396400 chr7B 79.257 646 93 20 1010 1627 539989724 539989092 2.230000e-111 412.0
9 TraesCS7D01G396400 chr5A 90.782 1508 91 29 811 2284 658800349 658798856 0.000000e+00 1971.0
10 TraesCS7D01G396400 chr5A 85.360 403 27 11 89 478 658801050 658800667 3.750000e-104 388.0
11 TraesCS7D01G396400 chr5A 95.652 230 9 1 2424 2652 658798707 658798478 4.890000e-98 368.0
12 TraesCS7D01G396400 chr4B 81.982 1110 183 13 1010 2109 673224135 673225237 0.000000e+00 926.0
13 TraesCS7D01G396400 chr4B 86.837 509 31 9 41 537 673224558 673224074 1.270000e-148 536.0
14 TraesCS7D01G396400 chr6B 77.669 1124 215 26 1010 2103 127919387 127918270 0.000000e+00 652.0
15 TraesCS7D01G396400 chr6B 77.669 1124 215 26 1010 2103 129157609 129156492 0.000000e+00 652.0
16 TraesCS7D01G396400 chr4D 96.169 261 10 0 2745 3005 440510045 440510305 7.950000e-116 427.0
17 TraesCS7D01G396400 chr4D 85.393 89 12 1 2533 2621 12611176 12611263 1.180000e-14 91.6
18 TraesCS7D01G396400 chr6A 95.113 266 11 2 2740 3005 308188240 308187977 4.780000e-113 418.0
19 TraesCS7D01G396400 chr6A 94.007 267 15 1 2740 3005 392126513 392126779 1.340000e-108 403.0
20 TraesCS7D01G396400 chr5D 94.203 276 9 6 2733 3005 139429017 139428746 6.190000e-112 414.0
21 TraesCS7D01G396400 chr5D 94.361 266 15 0 2740 3005 419976030 419976295 2.880000e-110 409.0
22 TraesCS7D01G396400 chr2D 94.636 261 13 1 2745 3005 501303672 501303931 1.340000e-108 403.0
23 TraesCS7D01G396400 chr1A 93.609 266 17 0 2740 3005 256599054 256599319 6.230000e-107 398.0
24 TraesCS7D01G396400 chr5B 75.610 492 81 27 37 512 98292608 98293076 1.130000e-49 207.0
25 TraesCS7D01G396400 chr3D 86.667 60 8 0 1841 1900 604229069 604229010 2.000000e-07 67.6
26 TraesCS7D01G396400 chrUn 72.464 207 47 10 1841 2042 108923966 108923765 1.200000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G396400 chr7D 511187574 511190674 3100 False 5727 5727 100.000 1 3101 1 chr7D.!!$F1 3100
1 TraesCS7D01G396400 chr7D 511167982 511168668 686 True 619 619 83.092 1425 2110 1 chr7D.!!$R1 685
2 TraesCS7D01G396400 chr7A 582406538 582409141 2603 False 4224 4224 95.879 37 2655 1 chr7A.!!$F1 2618
3 TraesCS7D01G396400 chr7A 582405859 582406969 1110 True 780 780 79.805 1008 2109 1 chr7A.!!$R2 1101
4 TraesCS7D01G396400 chr7B 539989288 539991412 2124 False 3539 3539 96.896 37 2140 1 chr7B.!!$F1 2103
5 TraesCS7D01G396400 chr7B 539995882 539996386 504 False 747 747 93.064 2135 2653 1 chr7B.!!$F2 518
6 TraesCS7D01G396400 chr7B 539989092 539989724 632 True 412 412 79.257 1010 1627 1 chr7B.!!$R1 617
7 TraesCS7D01G396400 chr5A 658798478 658801050 2572 True 909 1971 90.598 89 2652 3 chr5A.!!$R1 2563
8 TraesCS7D01G396400 chr4B 673224135 673225237 1102 False 926 926 81.982 1010 2109 1 chr4B.!!$F1 1099
9 TraesCS7D01G396400 chr6B 127918270 127919387 1117 True 652 652 77.669 1010 2103 1 chr6B.!!$R1 1093
10 TraesCS7D01G396400 chr6B 129156492 129157609 1117 True 652 652 77.669 1010 2103 1 chr6B.!!$R2 1093

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.039618 TTCCCAATCTGGAACTGCCC 59.960 55.0 0.0 0.0 40.96 5.36 F
23 24 0.251742 CCCAATCTGGAACTGCCCAA 60.252 55.0 0.0 0.0 40.96 4.12 F
1423 1613 1.012086 TCTCGTCGTCATAAGGACCG 58.988 55.0 0.0 0.0 43.95 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1423 1613 1.334869 GATGGGATGATTGCGGTTGTC 59.665 52.381 0.0 0.0 0.00 3.18 R
1680 1882 2.812836 TGTAGTCGTGGGGTGATCTA 57.187 50.000 0.0 0.0 0.00 1.98 R
2955 3297 0.028902 GTCACGCCTGTTTGGTTGTC 59.971 55.000 0.0 0.0 38.35 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.670105 TTCCCAATCTGGAACTGCC 57.330 52.632 0.00 0.00 40.96 4.85
21 22 0.039618 TTCCCAATCTGGAACTGCCC 59.960 55.000 0.00 0.00 40.96 5.36
22 23 1.139498 TCCCAATCTGGAACTGCCCA 61.139 55.000 0.00 0.00 40.96 5.36
23 24 0.251742 CCCAATCTGGAACTGCCCAA 60.252 55.000 0.00 0.00 40.96 4.12
24 25 1.620524 CCCAATCTGGAACTGCCCAAT 60.621 52.381 0.00 0.00 40.96 3.16
25 26 1.479323 CCAATCTGGAACTGCCCAATG 59.521 52.381 0.00 0.00 40.96 2.82
26 27 2.173519 CAATCTGGAACTGCCCAATGT 58.826 47.619 0.00 0.00 35.47 2.71
27 28 2.564062 CAATCTGGAACTGCCCAATGTT 59.436 45.455 0.00 0.00 35.47 2.71
28 29 2.380064 TCTGGAACTGCCCAATGTTT 57.620 45.000 0.00 0.00 35.47 2.83
29 30 2.238521 TCTGGAACTGCCCAATGTTTC 58.761 47.619 0.00 0.00 35.47 2.78
30 31 2.158475 TCTGGAACTGCCCAATGTTTCT 60.158 45.455 0.00 0.00 35.47 2.52
31 32 3.073798 TCTGGAACTGCCCAATGTTTCTA 59.926 43.478 0.00 0.00 35.47 2.10
32 33 4.019174 CTGGAACTGCCCAATGTTTCTAT 58.981 43.478 0.00 0.00 35.47 1.98
33 34 5.045213 TCTGGAACTGCCCAATGTTTCTATA 60.045 40.000 0.00 0.00 35.47 1.31
34 35 5.765510 TGGAACTGCCCAATGTTTCTATAT 58.234 37.500 0.00 0.00 34.97 0.86
35 36 6.194235 TGGAACTGCCCAATGTTTCTATATT 58.806 36.000 0.00 0.00 34.97 1.28
496 503 1.393539 CGAAACGGACACCATCATCAC 59.606 52.381 0.00 0.00 0.00 3.06
1423 1613 1.012086 TCTCGTCGTCATAAGGACCG 58.988 55.000 0.00 0.00 43.95 4.79
1680 1882 1.818674 GACAAAGATGCACCGGGAAAT 59.181 47.619 6.32 0.00 0.00 2.17
1691 1893 1.136828 CCGGGAAATAGATCACCCCA 58.863 55.000 0.00 0.00 39.20 4.96
1716 1918 8.576281 CACGACTACATAATTAATGACGCTATC 58.424 37.037 0.00 0.00 39.07 2.08
2079 2292 0.447801 GTTTCGATGCGATGTGGCTT 59.552 50.000 0.00 0.00 35.23 4.35
2206 2421 6.128526 GCGAGGGATAGATAATAGTTTGTTGC 60.129 42.308 0.00 0.00 0.00 4.17
2302 2642 6.838198 TCTACAAGTGTGTGTGTACATTTC 57.162 37.500 0.00 0.00 39.39 2.17
2317 2657 3.265489 ACATTTCCCCCTAGTCCAAAGA 58.735 45.455 0.00 0.00 0.00 2.52
2387 2727 4.978580 GCTTTTTAGAGACAAGGCAAACAG 59.021 41.667 0.00 0.00 0.00 3.16
2484 2825 2.216488 CACTTTCGTGTCACAACTCTCG 59.784 50.000 3.42 0.00 36.39 4.04
2676 3018 2.009108 CATGAGGTTCATGTCGCCG 58.991 57.895 10.20 0.00 46.80 6.46
2677 3019 1.153369 ATGAGGTTCATGTCGCCGG 60.153 57.895 0.00 0.00 35.43 6.13
2678 3020 2.511600 GAGGTTCATGTCGCCGGG 60.512 66.667 2.18 0.00 0.00 5.73
2679 3021 3.000819 AGGTTCATGTCGCCGGGA 61.001 61.111 2.18 0.00 0.00 5.14
2680 3022 2.046700 GGTTCATGTCGCCGGGAA 60.047 61.111 2.18 0.00 0.00 3.97
2681 3023 1.673009 GGTTCATGTCGCCGGGAAA 60.673 57.895 2.18 0.00 0.00 3.13
2682 3024 1.644786 GGTTCATGTCGCCGGGAAAG 61.645 60.000 2.18 0.00 0.00 2.62
2683 3025 0.672401 GTTCATGTCGCCGGGAAAGA 60.672 55.000 2.18 0.00 0.00 2.52
2684 3026 0.391130 TTCATGTCGCCGGGAAAGAG 60.391 55.000 2.18 0.00 0.00 2.85
2685 3027 2.125106 ATGTCGCCGGGAAAGAGC 60.125 61.111 2.18 0.00 0.00 4.09
2686 3028 2.660064 ATGTCGCCGGGAAAGAGCT 61.660 57.895 2.18 0.00 0.00 4.09
2687 3029 2.047179 GTCGCCGGGAAAGAGCTT 60.047 61.111 2.18 0.00 0.00 3.74
2688 3030 2.101233 GTCGCCGGGAAAGAGCTTC 61.101 63.158 2.18 0.00 0.00 3.86
2689 3031 3.188786 CGCCGGGAAAGAGCTTCG 61.189 66.667 2.18 0.00 34.56 3.79
2690 3032 2.820037 GCCGGGAAAGAGCTTCGG 60.820 66.667 2.18 4.92 43.13 4.30
2691 3033 2.820037 CCGGGAAAGAGCTTCGGC 60.820 66.667 0.00 0.00 42.17 5.54
2692 3034 2.047274 CGGGAAAGAGCTTCGGCA 60.047 61.111 0.00 0.00 44.74 5.69
2693 3035 2.391389 CGGGAAAGAGCTTCGGCAC 61.391 63.158 0.00 0.00 44.74 5.01
2694 3036 2.041115 GGGAAAGAGCTTCGGCACC 61.041 63.158 0.00 0.00 44.74 5.01
2695 3037 1.302511 GGAAAGAGCTTCGGCACCA 60.303 57.895 0.00 0.00 44.74 4.17
2696 3038 1.578206 GGAAAGAGCTTCGGCACCAC 61.578 60.000 0.00 0.00 44.74 4.16
2697 3039 1.578206 GAAAGAGCTTCGGCACCACC 61.578 60.000 0.00 0.00 44.74 4.61
2707 3049 4.357947 GCACCACCGTCTCGCAGA 62.358 66.667 0.00 0.00 0.00 4.26
2722 3064 2.690497 TCGCAGAGTCTAGATCAAAGGG 59.310 50.000 0.00 0.00 0.00 3.95
2723 3065 2.690497 CGCAGAGTCTAGATCAAAGGGA 59.310 50.000 0.00 0.00 0.00 4.20
2724 3066 3.131223 CGCAGAGTCTAGATCAAAGGGAA 59.869 47.826 0.00 0.00 0.00 3.97
2725 3067 4.382040 CGCAGAGTCTAGATCAAAGGGAAA 60.382 45.833 0.00 0.00 0.00 3.13
2726 3068 5.115480 GCAGAGTCTAGATCAAAGGGAAAG 58.885 45.833 0.00 0.00 0.00 2.62
2727 3069 5.669477 CAGAGTCTAGATCAAAGGGAAAGG 58.331 45.833 0.00 0.00 0.00 3.11
2728 3070 4.719273 AGAGTCTAGATCAAAGGGAAAGGG 59.281 45.833 0.00 0.00 0.00 3.95
2729 3071 4.699994 AGTCTAGATCAAAGGGAAAGGGA 58.300 43.478 0.00 0.00 0.00 4.20
2730 3072 4.719273 AGTCTAGATCAAAGGGAAAGGGAG 59.281 45.833 0.00 0.00 0.00 4.30
2731 3073 4.717280 GTCTAGATCAAAGGGAAAGGGAGA 59.283 45.833 0.00 0.00 0.00 3.71
2732 3074 4.965532 TCTAGATCAAAGGGAAAGGGAGAG 59.034 45.833 0.00 0.00 0.00 3.20
2733 3075 2.849318 AGATCAAAGGGAAAGGGAGAGG 59.151 50.000 0.00 0.00 0.00 3.69
2734 3076 1.372501 TCAAAGGGAAAGGGAGAGGG 58.627 55.000 0.00 0.00 0.00 4.30
2735 3077 0.332972 CAAAGGGAAAGGGAGAGGGG 59.667 60.000 0.00 0.00 0.00 4.79
2736 3078 0.103337 AAAGGGAAAGGGAGAGGGGT 60.103 55.000 0.00 0.00 0.00 4.95
2737 3079 0.846870 AAGGGAAAGGGAGAGGGGTG 60.847 60.000 0.00 0.00 0.00 4.61
2738 3080 1.229853 GGGAAAGGGAGAGGGGTGA 60.230 63.158 0.00 0.00 0.00 4.02
2739 3081 0.845102 GGGAAAGGGAGAGGGGTGAA 60.845 60.000 0.00 0.00 0.00 3.18
2740 3082 0.328592 GGAAAGGGAGAGGGGTGAAC 59.671 60.000 0.00 0.00 0.00 3.18
2741 3083 1.064825 GAAAGGGAGAGGGGTGAACA 58.935 55.000 0.00 0.00 0.00 3.18
2742 3084 1.423921 GAAAGGGAGAGGGGTGAACAA 59.576 52.381 0.00 0.00 0.00 2.83
2743 3085 1.760405 AAGGGAGAGGGGTGAACAAT 58.240 50.000 0.00 0.00 0.00 2.71
2744 3086 1.760405 AGGGAGAGGGGTGAACAATT 58.240 50.000 0.00 0.00 0.00 2.32
2745 3087 2.929301 AGGGAGAGGGGTGAACAATTA 58.071 47.619 0.00 0.00 0.00 1.40
2746 3088 3.265489 AGGGAGAGGGGTGAACAATTAA 58.735 45.455 0.00 0.00 0.00 1.40
2747 3089 3.267031 AGGGAGAGGGGTGAACAATTAAG 59.733 47.826 0.00 0.00 0.00 1.85
2748 3090 3.621558 GGAGAGGGGTGAACAATTAAGG 58.378 50.000 0.00 0.00 0.00 2.69
2749 3091 3.621558 GAGAGGGGTGAACAATTAAGGG 58.378 50.000 0.00 0.00 0.00 3.95
2750 3092 2.100197 GAGGGGTGAACAATTAAGGGC 58.900 52.381 0.00 0.00 0.00 5.19
2751 3093 1.191535 GGGGTGAACAATTAAGGGCC 58.808 55.000 0.00 0.00 0.00 5.80
2752 3094 1.273041 GGGGTGAACAATTAAGGGCCT 60.273 52.381 0.00 0.00 0.00 5.19
2753 3095 1.824852 GGGTGAACAATTAAGGGCCTG 59.175 52.381 6.92 0.00 0.00 4.85
2754 3096 2.525368 GGTGAACAATTAAGGGCCTGT 58.475 47.619 6.92 0.00 0.00 4.00
2755 3097 2.897326 GGTGAACAATTAAGGGCCTGTT 59.103 45.455 6.92 7.42 34.78 3.16
2756 3098 3.323691 GGTGAACAATTAAGGGCCTGTTT 59.676 43.478 6.92 0.00 32.31 2.83
2757 3099 4.306600 GTGAACAATTAAGGGCCTGTTTG 58.693 43.478 6.92 13.95 32.31 2.93
2758 3100 3.323403 TGAACAATTAAGGGCCTGTTTGG 59.677 43.478 20.79 9.79 32.31 3.28
2759 3101 2.970987 ACAATTAAGGGCCTGTTTGGT 58.029 42.857 20.79 10.32 38.35 3.67
2760 3102 3.313791 ACAATTAAGGGCCTGTTTGGTT 58.686 40.909 20.79 3.13 38.35 3.67
2761 3103 3.323691 ACAATTAAGGGCCTGTTTGGTTC 59.676 43.478 20.79 0.00 38.35 3.62
2762 3104 2.003937 TTAAGGGCCTGTTTGGTTCC 57.996 50.000 6.92 0.00 38.35 3.62
2763 3105 0.854218 TAAGGGCCTGTTTGGTTCCA 59.146 50.000 6.92 0.00 38.35 3.53
2764 3106 0.031616 AAGGGCCTGTTTGGTTCCAA 60.032 50.000 6.92 0.00 38.35 3.53
2765 3107 0.031616 AGGGCCTGTTTGGTTCCAAA 60.032 50.000 4.50 12.29 38.35 3.28
2766 3108 1.055849 GGGCCTGTTTGGTTCCAAAT 58.944 50.000 18.11 0.00 38.07 2.32
2767 3109 2.158234 AGGGCCTGTTTGGTTCCAAATA 60.158 45.455 18.11 14.87 38.07 1.40
2768 3110 2.635427 GGGCCTGTTTGGTTCCAAATAA 59.365 45.455 18.11 10.23 38.07 1.40
2769 3111 3.306710 GGGCCTGTTTGGTTCCAAATAAG 60.307 47.826 18.11 17.05 38.07 1.73
2770 3112 3.323691 GGCCTGTTTGGTTCCAAATAAGT 59.676 43.478 18.11 0.00 38.07 2.24
2771 3113 4.556233 GCCTGTTTGGTTCCAAATAAGTC 58.444 43.478 18.11 7.50 38.07 3.01
2772 3114 4.038642 GCCTGTTTGGTTCCAAATAAGTCA 59.961 41.667 18.11 10.94 38.07 3.41
2773 3115 5.528870 CCTGTTTGGTTCCAAATAAGTCAC 58.471 41.667 18.11 6.79 38.07 3.67
2774 3116 5.508994 CCTGTTTGGTTCCAAATAAGTCACC 60.509 44.000 18.11 5.59 38.07 4.02
2775 3117 4.956700 TGTTTGGTTCCAAATAAGTCACCA 59.043 37.500 18.11 7.77 38.07 4.17
2776 3118 5.422331 TGTTTGGTTCCAAATAAGTCACCAA 59.578 36.000 18.11 0.00 41.48 3.67
2777 3119 5.523438 TTGGTTCCAAATAAGTCACCAAC 57.477 39.130 1.42 0.00 38.97 3.77
2778 3120 4.798882 TGGTTCCAAATAAGTCACCAACT 58.201 39.130 0.00 0.00 41.10 3.16
2779 3121 6.155393 TTTGGTTCCAAATAAGTCACCAACTT 59.845 34.615 12.29 0.00 42.59 2.66
2792 3134 7.653767 AGTCACCAACTTATAAGTCGAAAAG 57.346 36.000 18.28 7.33 38.57 2.27
2793 3135 7.215085 AGTCACCAACTTATAAGTCGAAAAGT 58.785 34.615 18.28 7.29 38.57 2.66
2794 3136 7.170998 AGTCACCAACTTATAAGTCGAAAAGTG 59.829 37.037 18.28 16.78 38.57 3.16
2795 3137 7.170320 GTCACCAACTTATAAGTCGAAAAGTGA 59.830 37.037 18.28 18.36 38.57 3.41
2796 3138 7.711772 TCACCAACTTATAAGTCGAAAAGTGAA 59.288 33.333 18.28 7.64 38.57 3.18
2797 3139 8.339714 CACCAACTTATAAGTCGAAAAGTGAAA 58.660 33.333 18.28 0.00 38.57 2.69
2798 3140 8.895737 ACCAACTTATAAGTCGAAAAGTGAAAA 58.104 29.630 18.28 0.00 38.57 2.29
2799 3141 9.724839 CCAACTTATAAGTCGAAAAGTGAAAAA 57.275 29.630 18.28 0.00 38.57 1.94
2822 3164 8.729805 AAAAATGACTTATTTTGCCAAACAGA 57.270 26.923 0.00 0.00 45.74 3.41
2823 3165 7.713764 AAATGACTTATTTTGCCAAACAGAC 57.286 32.000 0.00 0.00 35.47 3.51
2824 3166 5.195001 TGACTTATTTTGCCAAACAGACC 57.805 39.130 0.00 0.00 0.00 3.85
2825 3167 4.038642 TGACTTATTTTGCCAAACAGACCC 59.961 41.667 0.00 0.00 0.00 4.46
2826 3168 3.964031 ACTTATTTTGCCAAACAGACCCA 59.036 39.130 0.00 0.00 0.00 4.51
2827 3169 4.407296 ACTTATTTTGCCAAACAGACCCAA 59.593 37.500 0.00 0.00 0.00 4.12
2828 3170 2.682155 TTTTGCCAAACAGACCCAAC 57.318 45.000 0.00 0.00 0.00 3.77
2829 3171 1.859302 TTTGCCAAACAGACCCAACT 58.141 45.000 0.00 0.00 0.00 3.16
2830 3172 1.859302 TTGCCAAACAGACCCAACTT 58.141 45.000 0.00 0.00 0.00 2.66
2831 3173 2.738587 TGCCAAACAGACCCAACTTA 57.261 45.000 0.00 0.00 0.00 2.24
2832 3174 3.237268 TGCCAAACAGACCCAACTTAT 57.763 42.857 0.00 0.00 0.00 1.73
2833 3175 4.374689 TGCCAAACAGACCCAACTTATA 57.625 40.909 0.00 0.00 0.00 0.98
2834 3176 4.730966 TGCCAAACAGACCCAACTTATAA 58.269 39.130 0.00 0.00 0.00 0.98
2835 3177 4.764823 TGCCAAACAGACCCAACTTATAAG 59.235 41.667 11.05 11.05 0.00 1.73
2836 3178 4.765339 GCCAAACAGACCCAACTTATAAGT 59.235 41.667 12.50 12.50 42.04 2.24
2837 3179 5.106277 GCCAAACAGACCCAACTTATAAGTC 60.106 44.000 18.28 6.18 38.57 3.01
2838 3180 6.001460 CCAAACAGACCCAACTTATAAGTCA 58.999 40.000 18.28 0.00 38.57 3.41
2839 3181 6.659242 CCAAACAGACCCAACTTATAAGTCAT 59.341 38.462 18.28 1.19 38.57 3.06
2840 3182 7.827236 CCAAACAGACCCAACTTATAAGTCATA 59.173 37.037 18.28 0.00 38.57 2.15
2841 3183 9.226606 CAAACAGACCCAACTTATAAGTCATAA 57.773 33.333 18.28 0.00 38.57 1.90
2852 3194 7.484035 CTTATAAGTCATAAGTTGCTCCACC 57.516 40.000 4.18 0.00 40.84 4.61
2853 3195 2.789409 AGTCATAAGTTGCTCCACCC 57.211 50.000 0.00 0.00 0.00 4.61
2854 3196 1.282157 AGTCATAAGTTGCTCCACCCC 59.718 52.381 0.00 0.00 0.00 4.95
2855 3197 1.004277 GTCATAAGTTGCTCCACCCCA 59.996 52.381 0.00 0.00 0.00 4.96
2856 3198 1.707989 TCATAAGTTGCTCCACCCCAA 59.292 47.619 0.00 0.00 0.00 4.12
2857 3199 1.818674 CATAAGTTGCTCCACCCCAAC 59.181 52.381 0.00 0.00 41.13 3.77
2858 3200 3.674278 AGTTGCTCCACCCCAACT 58.326 55.556 0.56 0.56 44.86 3.16
2859 3201 1.930520 AGTTGCTCCACCCCAACTT 59.069 52.632 0.56 0.00 46.86 2.66
2860 3202 1.145571 AGTTGCTCCACCCCAACTTA 58.854 50.000 0.56 0.00 46.86 2.24
2861 3203 1.497286 AGTTGCTCCACCCCAACTTAA 59.503 47.619 0.56 0.00 46.86 1.85
2862 3204 2.091555 AGTTGCTCCACCCCAACTTAAA 60.092 45.455 0.56 0.00 46.86 1.52
2863 3205 2.696187 GTTGCTCCACCCCAACTTAAAA 59.304 45.455 0.00 0.00 38.55 1.52
2864 3206 2.312390 TGCTCCACCCCAACTTAAAAC 58.688 47.619 0.00 0.00 0.00 2.43
2865 3207 2.091555 TGCTCCACCCCAACTTAAAACT 60.092 45.455 0.00 0.00 0.00 2.66
2866 3208 2.963101 GCTCCACCCCAACTTAAAACTT 59.037 45.455 0.00 0.00 0.00 2.66
2867 3209 4.146564 GCTCCACCCCAACTTAAAACTTA 58.853 43.478 0.00 0.00 0.00 2.24
2868 3210 4.770531 GCTCCACCCCAACTTAAAACTTAT 59.229 41.667 0.00 0.00 0.00 1.73
2869 3211 5.947566 GCTCCACCCCAACTTAAAACTTATA 59.052 40.000 0.00 0.00 0.00 0.98
2870 3212 6.434965 GCTCCACCCCAACTTAAAACTTATAA 59.565 38.462 0.00 0.00 0.00 0.98
2871 3213 7.362660 GCTCCACCCCAACTTAAAACTTATAAG 60.363 40.741 11.05 11.05 36.62 1.73
2872 3214 7.528675 TCCACCCCAACTTAAAACTTATAAGT 58.471 34.615 12.50 12.50 43.57 2.24
2873 3215 7.666804 TCCACCCCAACTTAAAACTTATAAGTC 59.333 37.037 18.28 0.00 41.49 3.01
2874 3216 7.449086 CCACCCCAACTTAAAACTTATAAGTCA 59.551 37.037 18.28 4.72 41.49 3.41
2875 3217 8.294577 CACCCCAACTTAAAACTTATAAGTCAC 58.705 37.037 18.28 0.00 41.49 3.67
2876 3218 7.449395 ACCCCAACTTAAAACTTATAAGTCACC 59.551 37.037 18.28 0.00 41.49 4.02
2877 3219 7.094075 CCCCAACTTAAAACTTATAAGTCACCC 60.094 40.741 18.28 0.00 41.49 4.61
2878 3220 7.094075 CCCAACTTAAAACTTATAAGTCACCCC 60.094 40.741 18.28 0.00 41.49 4.95
2879 3221 7.094075 CCAACTTAAAACTTATAAGTCACCCCC 60.094 40.741 18.28 0.00 41.49 5.40
2880 3222 7.339177 ACTTAAAACTTATAAGTCACCCCCT 57.661 36.000 18.28 0.00 38.85 4.79
2881 3223 7.762610 ACTTAAAACTTATAAGTCACCCCCTT 58.237 34.615 18.28 4.77 38.85 3.95
2882 3224 8.229605 ACTTAAAACTTATAAGTCACCCCCTTT 58.770 33.333 18.28 14.40 38.85 3.11
2883 3225 9.085645 CTTAAAACTTATAAGTCACCCCCTTTT 57.914 33.333 18.28 13.78 38.57 2.27
2884 3226 6.911250 AAACTTATAAGTCACCCCCTTTTG 57.089 37.500 18.28 0.00 38.57 2.44
2885 3227 4.341487 ACTTATAAGTCACCCCCTTTTGC 58.659 43.478 12.50 0.00 32.86 3.68
2886 3228 1.834188 ATAAGTCACCCCCTTTTGCG 58.166 50.000 0.00 0.00 0.00 4.85
2887 3229 0.475044 TAAGTCACCCCCTTTTGCGT 59.525 50.000 0.00 0.00 0.00 5.24
2888 3230 1.106944 AAGTCACCCCCTTTTGCGTG 61.107 55.000 0.00 0.00 0.00 5.34
2889 3231 2.203422 TCACCCCCTTTTGCGTGG 60.203 61.111 0.00 0.00 0.00 4.94
2890 3232 3.302344 CACCCCCTTTTGCGTGGG 61.302 66.667 0.00 0.00 44.03 4.61
2891 3233 3.828023 ACCCCCTTTTGCGTGGGT 61.828 61.111 0.00 0.00 46.50 4.51
2892 3234 2.523168 CCCCCTTTTGCGTGGGTT 60.523 61.111 0.00 0.00 41.82 4.11
2893 3235 2.570284 CCCCCTTTTGCGTGGGTTC 61.570 63.158 0.00 0.00 41.82 3.62
2894 3236 2.570284 CCCCTTTTGCGTGGGTTCC 61.570 63.158 0.00 0.00 41.82 3.62
2895 3237 1.830408 CCCTTTTGCGTGGGTTCCA 60.830 57.895 0.00 0.00 38.65 3.53
2906 3248 1.223501 TGGGTTCCACCACCTTTACA 58.776 50.000 0.00 0.00 41.02 2.41
2907 3249 1.783979 TGGGTTCCACCACCTTTACAT 59.216 47.619 0.00 0.00 41.02 2.29
2908 3250 2.987437 TGGGTTCCACCACCTTTACATA 59.013 45.455 0.00 0.00 41.02 2.29
2909 3251 3.398292 TGGGTTCCACCACCTTTACATAA 59.602 43.478 0.00 0.00 41.02 1.90
2910 3252 4.140994 TGGGTTCCACCACCTTTACATAAA 60.141 41.667 0.00 0.00 41.02 1.40
2911 3253 4.833938 GGGTTCCACCACCTTTACATAAAA 59.166 41.667 0.00 0.00 41.02 1.52
2912 3254 5.304871 GGGTTCCACCACCTTTACATAAAAA 59.695 40.000 0.00 0.00 41.02 1.94
2933 3275 6.553953 AAAAATAAGGTGAAAAGGTGTGGT 57.446 33.333 0.00 0.00 0.00 4.16
2934 3276 5.784578 AAATAAGGTGAAAAGGTGTGGTC 57.215 39.130 0.00 0.00 0.00 4.02
2935 3277 2.818751 AAGGTGAAAAGGTGTGGTCA 57.181 45.000 0.00 0.00 0.00 4.02
2936 3278 2.348411 AGGTGAAAAGGTGTGGTCAG 57.652 50.000 0.00 0.00 0.00 3.51
2937 3279 1.133792 AGGTGAAAAGGTGTGGTCAGG 60.134 52.381 0.00 0.00 0.00 3.86
2938 3280 1.409661 GGTGAAAAGGTGTGGTCAGGT 60.410 52.381 0.00 0.00 0.00 4.00
2939 3281 1.676006 GTGAAAAGGTGTGGTCAGGTG 59.324 52.381 0.00 0.00 0.00 4.00
2940 3282 1.562008 TGAAAAGGTGTGGTCAGGTGA 59.438 47.619 0.00 0.00 0.00 4.02
2941 3283 1.947456 GAAAAGGTGTGGTCAGGTGAC 59.053 52.381 1.17 1.17 44.04 3.67
2942 3284 1.213296 AAAGGTGTGGTCAGGTGACT 58.787 50.000 9.90 0.00 44.20 3.41
2943 3285 1.213296 AAGGTGTGGTCAGGTGACTT 58.787 50.000 9.90 0.00 44.20 3.01
2944 3286 2.097110 AGGTGTGGTCAGGTGACTTA 57.903 50.000 9.90 0.00 44.20 2.24
2945 3287 2.621070 AGGTGTGGTCAGGTGACTTAT 58.379 47.619 9.90 0.00 44.20 1.73
2946 3288 3.786553 AGGTGTGGTCAGGTGACTTATA 58.213 45.455 9.90 0.00 44.20 0.98
2947 3289 4.164981 AGGTGTGGTCAGGTGACTTATAA 58.835 43.478 9.90 0.00 44.20 0.98
2948 3290 4.223032 AGGTGTGGTCAGGTGACTTATAAG 59.777 45.833 11.05 11.05 44.20 1.73
2949 3291 4.020485 GGTGTGGTCAGGTGACTTATAAGT 60.020 45.833 18.05 18.05 44.20 2.24
2968 3310 3.904136 GTCAGATGACAACCAAACAGG 57.096 47.619 8.09 0.00 44.18 4.00
2969 3311 2.030805 GTCAGATGACAACCAAACAGGC 60.031 50.000 8.09 0.00 44.18 4.85
2970 3312 1.069022 CAGATGACAACCAAACAGGCG 60.069 52.381 0.00 0.00 43.14 5.52
2971 3313 0.951558 GATGACAACCAAACAGGCGT 59.048 50.000 0.00 0.00 43.14 5.68
2972 3314 0.667993 ATGACAACCAAACAGGCGTG 59.332 50.000 4.53 4.53 43.14 5.34
2973 3315 0.393132 TGACAACCAAACAGGCGTGA 60.393 50.000 14.38 0.00 43.14 4.35
2974 3316 0.028902 GACAACCAAACAGGCGTGAC 59.971 55.000 14.38 0.00 43.14 3.67
2975 3317 0.393808 ACAACCAAACAGGCGTGACT 60.394 50.000 14.38 0.00 43.14 3.41
2976 3318 0.738389 CAACCAAACAGGCGTGACTT 59.262 50.000 14.38 3.10 43.14 3.01
2977 3319 1.944024 CAACCAAACAGGCGTGACTTA 59.056 47.619 14.38 0.00 43.14 2.24
2978 3320 2.552315 CAACCAAACAGGCGTGACTTAT 59.448 45.455 14.38 0.00 43.14 1.73
2979 3321 3.688694 ACCAAACAGGCGTGACTTATA 57.311 42.857 14.38 0.00 43.14 0.98
2980 3322 4.010667 ACCAAACAGGCGTGACTTATAA 57.989 40.909 14.38 0.00 43.14 0.98
2981 3323 4.000988 ACCAAACAGGCGTGACTTATAAG 58.999 43.478 14.38 11.05 43.14 1.73
2982 3324 4.000988 CCAAACAGGCGTGACTTATAAGT 58.999 43.478 18.05 18.05 43.16 2.24
2999 3341 9.269453 ACTTATAAGTCACTGGTTTTAAGTCAC 57.731 33.333 12.50 0.00 32.86 3.67
3000 3342 8.611654 TTATAAGTCACTGGTTTTAAGTCACC 57.388 34.615 0.00 0.00 0.00 4.02
3001 3343 4.772886 AGTCACTGGTTTTAAGTCACCT 57.227 40.909 3.10 0.00 33.76 4.00
3002 3344 4.451900 AGTCACTGGTTTTAAGTCACCTG 58.548 43.478 6.12 6.12 37.86 4.00
3003 3345 4.163458 AGTCACTGGTTTTAAGTCACCTGA 59.837 41.667 11.87 3.02 35.95 3.86
3004 3346 4.272748 GTCACTGGTTTTAAGTCACCTGAC 59.727 45.833 11.87 0.00 45.08 3.51
3005 3347 3.564225 CACTGGTTTTAAGTCACCTGACC 59.436 47.826 11.87 0.00 45.85 4.02
3006 3348 3.201266 ACTGGTTTTAAGTCACCTGACCA 59.799 43.478 11.87 0.00 45.85 4.02
3007 3349 4.204012 CTGGTTTTAAGTCACCTGACCAA 58.796 43.478 1.66 0.00 45.85 3.67
3008 3350 4.601084 TGGTTTTAAGTCACCTGACCAAA 58.399 39.130 1.66 1.14 45.85 3.28
3009 3351 4.399934 TGGTTTTAAGTCACCTGACCAAAC 59.600 41.667 12.77 12.77 45.85 2.93
3010 3352 4.399934 GGTTTTAAGTCACCTGACCAAACA 59.600 41.667 18.28 2.15 45.85 2.83
3011 3353 5.449999 GGTTTTAAGTCACCTGACCAAACAG 60.450 44.000 18.28 0.00 45.85 3.16
3012 3354 4.764050 TTAAGTCACCTGACCAAACAGA 57.236 40.909 1.66 0.00 45.85 3.41
3013 3355 2.622064 AGTCACCTGACCAAACAGAC 57.378 50.000 1.66 0.00 45.85 3.51
3014 3356 1.141053 AGTCACCTGACCAAACAGACC 59.859 52.381 1.66 0.00 45.85 3.85
3015 3357 0.472471 TCACCTGACCAAACAGACCC 59.528 55.000 0.00 0.00 39.94 4.46
3016 3358 0.474184 CACCTGACCAAACAGACCCT 59.526 55.000 0.00 0.00 39.94 4.34
3017 3359 1.697432 CACCTGACCAAACAGACCCTA 59.303 52.381 0.00 0.00 39.94 3.53
3018 3360 2.105821 CACCTGACCAAACAGACCCTAA 59.894 50.000 0.00 0.00 39.94 2.69
3019 3361 2.781174 ACCTGACCAAACAGACCCTAAA 59.219 45.455 0.00 0.00 39.94 1.85
3020 3362 3.203487 ACCTGACCAAACAGACCCTAAAA 59.797 43.478 0.00 0.00 39.94 1.52
3021 3363 3.821033 CCTGACCAAACAGACCCTAAAAG 59.179 47.826 0.00 0.00 39.94 2.27
3022 3364 4.445735 CCTGACCAAACAGACCCTAAAAGA 60.446 45.833 0.00 0.00 39.94 2.52
3023 3365 5.118729 TGACCAAACAGACCCTAAAAGAA 57.881 39.130 0.00 0.00 0.00 2.52
3024 3366 5.130350 TGACCAAACAGACCCTAAAAGAAG 58.870 41.667 0.00 0.00 0.00 2.85
3025 3367 4.470602 ACCAAACAGACCCTAAAAGAAGG 58.529 43.478 0.00 0.00 36.30 3.46
3026 3368 4.167307 ACCAAACAGACCCTAAAAGAAGGA 59.833 41.667 0.00 0.00 39.15 3.36
3027 3369 5.137551 CCAAACAGACCCTAAAAGAAGGAA 58.862 41.667 0.00 0.00 39.15 3.36
3028 3370 5.241728 CCAAACAGACCCTAAAAGAAGGAAG 59.758 44.000 0.00 0.00 39.15 3.46
3029 3371 5.906772 AACAGACCCTAAAAGAAGGAAGA 57.093 39.130 0.00 0.00 39.15 2.87
3030 3372 5.491323 ACAGACCCTAAAAGAAGGAAGAG 57.509 43.478 0.00 0.00 39.15 2.85
3031 3373 4.257731 CAGACCCTAAAAGAAGGAAGAGC 58.742 47.826 0.00 0.00 39.15 4.09
3032 3374 3.055747 AGACCCTAAAAGAAGGAAGAGCG 60.056 47.826 0.00 0.00 39.15 5.03
3033 3375 2.027100 ACCCTAAAAGAAGGAAGAGCGG 60.027 50.000 0.00 0.00 39.15 5.52
3034 3376 2.010497 CCTAAAAGAAGGAAGAGCGGC 58.990 52.381 0.00 0.00 39.15 6.53
3035 3377 2.615493 CCTAAAAGAAGGAAGAGCGGCA 60.615 50.000 1.45 0.00 39.15 5.69
3036 3378 1.981256 AAAAGAAGGAAGAGCGGCAA 58.019 45.000 1.45 0.00 0.00 4.52
3037 3379 1.981256 AAAGAAGGAAGAGCGGCAAA 58.019 45.000 1.45 0.00 0.00 3.68
3038 3380 1.528129 AAGAAGGAAGAGCGGCAAAG 58.472 50.000 1.45 0.00 0.00 2.77
3039 3381 0.957888 AGAAGGAAGAGCGGCAAAGC 60.958 55.000 1.45 0.00 37.41 3.51
3040 3382 1.228245 AAGGAAGAGCGGCAAAGCA 60.228 52.632 1.45 0.00 40.15 3.91
3041 3383 0.823356 AAGGAAGAGCGGCAAAGCAA 60.823 50.000 1.45 0.00 40.15 3.91
3042 3384 1.211190 GGAAGAGCGGCAAAGCAAG 59.789 57.895 1.45 0.00 40.15 4.01
3043 3385 1.211190 GAAGAGCGGCAAAGCAAGG 59.789 57.895 1.45 0.00 40.15 3.61
3044 3386 1.228245 AAGAGCGGCAAAGCAAGGA 60.228 52.632 1.45 0.00 40.15 3.36
3045 3387 1.239968 AAGAGCGGCAAAGCAAGGAG 61.240 55.000 1.45 0.00 40.15 3.69
3046 3388 1.968540 GAGCGGCAAAGCAAGGAGT 60.969 57.895 1.45 0.00 40.15 3.85
3047 3389 1.916697 GAGCGGCAAAGCAAGGAGTC 61.917 60.000 1.45 0.00 40.15 3.36
3048 3390 2.260869 GCGGCAAAGCAAGGAGTCA 61.261 57.895 0.00 0.00 37.05 3.41
3049 3391 1.871772 CGGCAAAGCAAGGAGTCAG 59.128 57.895 0.00 0.00 0.00 3.51
3050 3392 1.580845 CGGCAAAGCAAGGAGTCAGG 61.581 60.000 0.00 0.00 0.00 3.86
3051 3393 0.250901 GGCAAAGCAAGGAGTCAGGA 60.251 55.000 0.00 0.00 0.00 3.86
3052 3394 1.609208 GCAAAGCAAGGAGTCAGGAA 58.391 50.000 0.00 0.00 0.00 3.36
3053 3395 1.956477 GCAAAGCAAGGAGTCAGGAAA 59.044 47.619 0.00 0.00 0.00 3.13
3054 3396 2.362077 GCAAAGCAAGGAGTCAGGAAAA 59.638 45.455 0.00 0.00 0.00 2.29
3055 3397 3.181476 GCAAAGCAAGGAGTCAGGAAAAA 60.181 43.478 0.00 0.00 0.00 1.94
3056 3398 4.363138 CAAAGCAAGGAGTCAGGAAAAAC 58.637 43.478 0.00 0.00 0.00 2.43
3057 3399 3.297134 AGCAAGGAGTCAGGAAAAACA 57.703 42.857 0.00 0.00 0.00 2.83
3058 3400 2.952310 AGCAAGGAGTCAGGAAAAACAC 59.048 45.455 0.00 0.00 0.00 3.32
3059 3401 2.952310 GCAAGGAGTCAGGAAAAACACT 59.048 45.455 0.00 0.00 0.00 3.55
3060 3402 3.243201 GCAAGGAGTCAGGAAAAACACTG 60.243 47.826 0.00 0.00 36.07 3.66
3061 3403 2.576615 AGGAGTCAGGAAAAACACTGC 58.423 47.619 0.00 0.00 34.76 4.40
3062 3404 2.173569 AGGAGTCAGGAAAAACACTGCT 59.826 45.455 0.00 0.00 33.13 4.24
3063 3405 2.550180 GGAGTCAGGAAAAACACTGCTC 59.450 50.000 0.00 0.00 37.26 4.26
3064 3406 2.550180 GAGTCAGGAAAAACACTGCTCC 59.450 50.000 0.00 0.00 34.63 4.70
3065 3407 2.173569 AGTCAGGAAAAACACTGCTCCT 59.826 45.455 0.00 0.00 38.92 3.69
3066 3408 3.391296 AGTCAGGAAAAACACTGCTCCTA 59.609 43.478 0.00 0.00 36.10 2.94
3067 3409 3.748568 GTCAGGAAAAACACTGCTCCTAG 59.251 47.826 0.00 0.00 36.10 3.02
3068 3410 2.485814 CAGGAAAAACACTGCTCCTAGC 59.514 50.000 0.00 0.00 42.82 3.42
3069 3411 1.813178 GGAAAAACACTGCTCCTAGCC 59.187 52.381 0.00 0.00 41.51 3.93
3070 3412 1.464997 GAAAAACACTGCTCCTAGCCG 59.535 52.381 0.00 0.00 41.51 5.52
3071 3413 0.321653 AAAACACTGCTCCTAGCCGG 60.322 55.000 0.00 0.00 41.51 6.13
3072 3414 2.804828 AAACACTGCTCCTAGCCGGC 62.805 60.000 21.89 21.89 41.51 6.13
3073 3415 4.880537 CACTGCTCCTAGCCGGCG 62.881 72.222 23.20 7.72 41.51 6.46
3075 3417 4.277593 CTGCTCCTAGCCGGCGAG 62.278 72.222 27.80 27.80 41.51 5.03
3078 3420 3.597728 CTCCTAGCCGGCGAGGTC 61.598 72.222 42.69 10.92 43.70 3.85
3079 3421 4.124943 TCCTAGCCGGCGAGGTCT 62.125 66.667 42.69 20.82 43.70 3.85
3080 3422 2.203308 CCTAGCCGGCGAGGTCTA 60.203 66.667 38.95 17.79 43.70 2.59
3081 3423 2.262303 CCTAGCCGGCGAGGTCTAG 61.262 68.421 38.95 25.03 41.87 2.43
3082 3424 2.203308 TAGCCGGCGAGGTCTAGG 60.203 66.667 23.20 0.00 43.70 3.02
3085 3427 3.905678 CCGGCGAGGTCTAGGCTG 61.906 72.222 9.30 0.00 34.51 4.85
3086 3428 3.905678 CGGCGAGGTCTAGGCTGG 61.906 72.222 0.00 0.00 0.00 4.85
3087 3429 4.228567 GGCGAGGTCTAGGCTGGC 62.229 72.222 0.00 0.00 0.00 4.85
3088 3430 4.577246 GCGAGGTCTAGGCTGGCG 62.577 72.222 0.00 0.00 0.00 5.69
3089 3431 2.829003 CGAGGTCTAGGCTGGCGA 60.829 66.667 0.00 0.00 0.00 5.54
3090 3432 2.415608 CGAGGTCTAGGCTGGCGAA 61.416 63.158 0.00 0.00 0.00 4.70
3091 3433 1.142097 GAGGTCTAGGCTGGCGAAC 59.858 63.158 0.00 0.00 0.00 3.95
3092 3434 2.202756 GGTCTAGGCTGGCGAACG 60.203 66.667 0.00 0.00 0.00 3.95
3093 3435 2.886124 GTCTAGGCTGGCGAACGC 60.886 66.667 10.81 10.81 41.06 4.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.039618 GGGCAGTTCCAGATTGGGAA 59.960 55.000 0.00 0.00 44.50 3.97
3 4 1.139498 TGGGCAGTTCCAGATTGGGA 61.139 55.000 0.00 0.00 38.32 4.37
4 5 0.251742 TTGGGCAGTTCCAGATTGGG 60.252 55.000 0.00 0.00 38.32 4.12
5 6 1.479323 CATTGGGCAGTTCCAGATTGG 59.521 52.381 0.00 0.00 38.17 3.16
6 7 2.173519 ACATTGGGCAGTTCCAGATTG 58.826 47.619 0.00 0.00 38.17 2.67
7 8 2.610438 ACATTGGGCAGTTCCAGATT 57.390 45.000 0.00 0.00 38.17 2.40
8 9 2.610438 AACATTGGGCAGTTCCAGAT 57.390 45.000 0.00 0.00 38.17 2.90
9 10 2.158475 AGAAACATTGGGCAGTTCCAGA 60.158 45.455 0.00 0.00 38.17 3.86
10 11 2.242043 AGAAACATTGGGCAGTTCCAG 58.758 47.619 0.00 0.00 38.17 3.86
11 12 2.380064 AGAAACATTGGGCAGTTCCA 57.620 45.000 0.00 0.00 36.21 3.53
12 13 6.715347 AATATAGAAACATTGGGCAGTTCC 57.285 37.500 0.00 0.00 0.00 3.62
13 14 7.010460 GCAAAATATAGAAACATTGGGCAGTTC 59.990 37.037 0.00 0.00 0.00 3.01
14 15 6.818142 GCAAAATATAGAAACATTGGGCAGTT 59.182 34.615 0.00 0.00 0.00 3.16
15 16 6.340522 GCAAAATATAGAAACATTGGGCAGT 58.659 36.000 0.00 0.00 0.00 4.40
16 17 5.459762 CGCAAAATATAGAAACATTGGGCAG 59.540 40.000 0.00 0.00 0.00 4.85
17 18 5.347342 CGCAAAATATAGAAACATTGGGCA 58.653 37.500 0.00 0.00 0.00 5.36
18 19 4.744631 CCGCAAAATATAGAAACATTGGGC 59.255 41.667 0.00 0.00 31.69 5.36
19 20 5.901552 ACCGCAAAATATAGAAACATTGGG 58.098 37.500 0.00 0.00 0.00 4.12
20 21 6.811170 ACAACCGCAAAATATAGAAACATTGG 59.189 34.615 0.00 0.00 0.00 3.16
21 22 7.810766 ACAACCGCAAAATATAGAAACATTG 57.189 32.000 0.00 0.00 0.00 2.82
22 23 8.085296 TCAACAACCGCAAAATATAGAAACATT 58.915 29.630 0.00 0.00 0.00 2.71
23 24 7.598278 TCAACAACCGCAAAATATAGAAACAT 58.402 30.769 0.00 0.00 0.00 2.71
24 25 6.971602 TCAACAACCGCAAAATATAGAAACA 58.028 32.000 0.00 0.00 0.00 2.83
25 26 7.220108 GGATCAACAACCGCAAAATATAGAAAC 59.780 37.037 0.00 0.00 0.00 2.78
26 27 7.122055 AGGATCAACAACCGCAAAATATAGAAA 59.878 33.333 0.00 0.00 0.00 2.52
27 28 6.601613 AGGATCAACAACCGCAAAATATAGAA 59.398 34.615 0.00 0.00 0.00 2.10
28 29 6.119536 AGGATCAACAACCGCAAAATATAGA 58.880 36.000 0.00 0.00 0.00 1.98
29 30 6.377327 AGGATCAACAACCGCAAAATATAG 57.623 37.500 0.00 0.00 0.00 1.31
30 31 6.767524 AAGGATCAACAACCGCAAAATATA 57.232 33.333 0.00 0.00 0.00 0.86
31 32 5.659440 AAGGATCAACAACCGCAAAATAT 57.341 34.783 0.00 0.00 0.00 1.28
32 33 6.767524 ATAAGGATCAACAACCGCAAAATA 57.232 33.333 0.00 0.00 0.00 1.40
33 34 5.659440 ATAAGGATCAACAACCGCAAAAT 57.341 34.783 0.00 0.00 0.00 1.82
34 35 5.392595 GCTATAAGGATCAACAACCGCAAAA 60.393 40.000 0.00 0.00 0.00 2.44
35 36 4.095782 GCTATAAGGATCAACAACCGCAAA 59.904 41.667 0.00 0.00 0.00 3.68
372 378 0.109272 TTCGAGCAGTCTGCCGTTAG 60.109 55.000 25.10 13.17 46.52 2.34
373 379 0.315886 TTTCGAGCAGTCTGCCGTTA 59.684 50.000 25.10 16.38 46.52 3.18
1060 1196 1.375523 GAGCGTGGTGAATCGGGTT 60.376 57.895 0.00 0.00 0.00 4.11
1135 1292 3.256960 TGTTGGGAGCAGGACCCC 61.257 66.667 0.00 0.00 46.21 4.95
1423 1613 1.334869 GATGGGATGATTGCGGTTGTC 59.665 52.381 0.00 0.00 0.00 3.18
1680 1882 2.812836 TGTAGTCGTGGGGTGATCTA 57.187 50.000 0.00 0.00 0.00 1.98
1691 1893 7.754027 GGATAGCGTCATTAATTATGTAGTCGT 59.246 37.037 0.00 0.00 35.64 4.34
1716 1918 3.361158 TGGTCGCGTGCCAAATGG 61.361 61.111 19.38 0.00 38.53 3.16
2079 2292 9.699410 ATGATCTACAATGAACTGGGATAAAAA 57.301 29.630 0.00 0.00 0.00 1.94
2177 2392 7.990886 ACAAACTATTATCTATCCCTCGCAAAA 59.009 33.333 0.00 0.00 0.00 2.44
2206 2421 9.377383 CTTACAATTTTCGGTAAACAACTAGTG 57.623 33.333 0.00 0.00 0.00 2.74
2302 2642 1.368374 TTGGTCTTTGGACTAGGGGG 58.632 55.000 0.00 0.00 41.82 5.40
2317 2657 2.346099 GCATACATTGCGTGTTTGGT 57.654 45.000 12.12 0.00 42.54 3.67
2484 2825 7.924103 ACGTTTTGTAAAGTGATGATTTTCC 57.076 32.000 0.00 0.00 0.00 3.13
2535 2876 0.394216 TCAGTGTGCTTTGCCACTGT 60.394 50.000 25.16 4.98 46.91 3.55
2659 3001 1.153369 CCGGCGACATGAACCTCAT 60.153 57.895 9.30 0.00 37.65 2.90
2660 3002 2.264480 CCGGCGACATGAACCTCA 59.736 61.111 9.30 0.00 0.00 3.86
2661 3003 2.511600 CCCGGCGACATGAACCTC 60.512 66.667 9.30 0.00 0.00 3.85
2662 3004 2.119484 TTTCCCGGCGACATGAACCT 62.119 55.000 9.30 0.00 0.00 3.50
2663 3005 1.644786 CTTTCCCGGCGACATGAACC 61.645 60.000 9.30 0.00 0.00 3.62
2664 3006 0.672401 TCTTTCCCGGCGACATGAAC 60.672 55.000 9.30 0.00 0.00 3.18
2665 3007 0.391130 CTCTTTCCCGGCGACATGAA 60.391 55.000 9.30 2.53 0.00 2.57
2666 3008 1.218047 CTCTTTCCCGGCGACATGA 59.782 57.895 9.30 0.00 0.00 3.07
2667 3009 2.464459 GCTCTTTCCCGGCGACATG 61.464 63.158 9.30 0.00 0.00 3.21
2668 3010 2.125106 GCTCTTTCCCGGCGACAT 60.125 61.111 9.30 0.00 0.00 3.06
2669 3011 2.781595 GAAGCTCTTTCCCGGCGACA 62.782 60.000 9.30 0.00 0.00 4.35
2670 3012 2.047179 AAGCTCTTTCCCGGCGAC 60.047 61.111 9.30 0.00 0.00 5.19
2671 3013 2.264794 GAAGCTCTTTCCCGGCGA 59.735 61.111 9.30 0.00 0.00 5.54
2672 3014 3.188786 CGAAGCTCTTTCCCGGCG 61.189 66.667 0.00 0.00 31.82 6.46
2673 3015 2.820037 CCGAAGCTCTTTCCCGGC 60.820 66.667 0.00 0.00 33.47 6.13
2674 3016 2.820037 GCCGAAGCTCTTTCCCGG 60.820 66.667 0.00 0.00 42.74 5.73
2675 3017 2.047274 TGCCGAAGCTCTTTCCCG 60.047 61.111 0.00 0.00 40.80 5.14
2676 3018 2.041115 GGTGCCGAAGCTCTTTCCC 61.041 63.158 0.00 0.00 40.80 3.97
2677 3019 1.302511 TGGTGCCGAAGCTCTTTCC 60.303 57.895 0.00 0.00 40.80 3.13
2678 3020 1.578206 GGTGGTGCCGAAGCTCTTTC 61.578 60.000 0.00 0.00 40.80 2.62
2679 3021 1.600916 GGTGGTGCCGAAGCTCTTT 60.601 57.895 0.00 0.00 40.80 2.52
2680 3022 2.032681 GGTGGTGCCGAAGCTCTT 59.967 61.111 0.00 0.00 40.80 2.85
2690 3032 4.357947 TCTGCGAGACGGTGGTGC 62.358 66.667 0.00 0.00 0.00 5.01
2691 3033 2.126307 CTCTGCGAGACGGTGGTG 60.126 66.667 0.00 0.00 0.00 4.17
2692 3034 2.597805 ACTCTGCGAGACGGTGGT 60.598 61.111 11.64 0.00 33.32 4.16
2693 3035 1.025113 TAGACTCTGCGAGACGGTGG 61.025 60.000 11.64 0.00 33.32 4.61
2694 3036 0.375454 CTAGACTCTGCGAGACGGTG 59.625 60.000 11.64 0.42 33.32 4.94
2695 3037 0.249676 TCTAGACTCTGCGAGACGGT 59.750 55.000 11.64 0.00 33.32 4.83
2696 3038 1.529438 GATCTAGACTCTGCGAGACGG 59.471 57.143 11.64 5.58 33.32 4.79
2697 3039 2.205911 TGATCTAGACTCTGCGAGACG 58.794 52.381 11.64 0.00 33.32 4.18
2698 3040 4.497340 CCTTTGATCTAGACTCTGCGAGAC 60.497 50.000 11.64 6.31 33.32 3.36
2699 3041 3.629855 CCTTTGATCTAGACTCTGCGAGA 59.370 47.826 11.64 0.00 33.32 4.04
2700 3042 3.243367 CCCTTTGATCTAGACTCTGCGAG 60.243 52.174 0.00 4.36 35.52 5.03
2701 3043 2.690497 CCCTTTGATCTAGACTCTGCGA 59.310 50.000 0.00 0.00 0.00 5.10
2702 3044 2.690497 TCCCTTTGATCTAGACTCTGCG 59.310 50.000 0.00 0.00 0.00 5.18
2703 3045 4.744795 TTCCCTTTGATCTAGACTCTGC 57.255 45.455 0.00 0.00 0.00 4.26
2704 3046 5.396213 CCCTTTCCCTTTGATCTAGACTCTG 60.396 48.000 0.00 0.00 0.00 3.35
2705 3047 4.719273 CCCTTTCCCTTTGATCTAGACTCT 59.281 45.833 0.00 0.00 0.00 3.24
2706 3048 4.717280 TCCCTTTCCCTTTGATCTAGACTC 59.283 45.833 0.00 0.00 0.00 3.36
2707 3049 4.699994 TCCCTTTCCCTTTGATCTAGACT 58.300 43.478 0.00 0.00 0.00 3.24
2708 3050 4.717280 TCTCCCTTTCCCTTTGATCTAGAC 59.283 45.833 0.00 0.00 0.00 2.59
2709 3051 4.960332 TCTCCCTTTCCCTTTGATCTAGA 58.040 43.478 0.00 0.00 0.00 2.43
2710 3052 4.102367 CCTCTCCCTTTCCCTTTGATCTAG 59.898 50.000 0.00 0.00 0.00 2.43
2711 3053 4.040755 CCTCTCCCTTTCCCTTTGATCTA 58.959 47.826 0.00 0.00 0.00 1.98
2712 3054 2.849318 CCTCTCCCTTTCCCTTTGATCT 59.151 50.000 0.00 0.00 0.00 2.75
2713 3055 2.092158 CCCTCTCCCTTTCCCTTTGATC 60.092 54.545 0.00 0.00 0.00 2.92
2714 3056 1.925959 CCCTCTCCCTTTCCCTTTGAT 59.074 52.381 0.00 0.00 0.00 2.57
2715 3057 1.372501 CCCTCTCCCTTTCCCTTTGA 58.627 55.000 0.00 0.00 0.00 2.69
2716 3058 0.332972 CCCCTCTCCCTTTCCCTTTG 59.667 60.000 0.00 0.00 0.00 2.77
2717 3059 0.103337 ACCCCTCTCCCTTTCCCTTT 60.103 55.000 0.00 0.00 0.00 3.11
2718 3060 0.846870 CACCCCTCTCCCTTTCCCTT 60.847 60.000 0.00 0.00 0.00 3.95
2719 3061 1.229984 CACCCCTCTCCCTTTCCCT 60.230 63.158 0.00 0.00 0.00 4.20
2720 3062 0.845102 TTCACCCCTCTCCCTTTCCC 60.845 60.000 0.00 0.00 0.00 3.97
2721 3063 0.328592 GTTCACCCCTCTCCCTTTCC 59.671 60.000 0.00 0.00 0.00 3.13
2722 3064 1.064825 TGTTCACCCCTCTCCCTTTC 58.935 55.000 0.00 0.00 0.00 2.62
2723 3065 1.529744 TTGTTCACCCCTCTCCCTTT 58.470 50.000 0.00 0.00 0.00 3.11
2724 3066 1.760405 ATTGTTCACCCCTCTCCCTT 58.240 50.000 0.00 0.00 0.00 3.95
2725 3067 1.760405 AATTGTTCACCCCTCTCCCT 58.240 50.000 0.00 0.00 0.00 4.20
2726 3068 3.621558 CTTAATTGTTCACCCCTCTCCC 58.378 50.000 0.00 0.00 0.00 4.30
2727 3069 3.621558 CCTTAATTGTTCACCCCTCTCC 58.378 50.000 0.00 0.00 0.00 3.71
2728 3070 3.621558 CCCTTAATTGTTCACCCCTCTC 58.378 50.000 0.00 0.00 0.00 3.20
2729 3071 2.291605 GCCCTTAATTGTTCACCCCTCT 60.292 50.000 0.00 0.00 0.00 3.69
2730 3072 2.100197 GCCCTTAATTGTTCACCCCTC 58.900 52.381 0.00 0.00 0.00 4.30
2731 3073 1.273041 GGCCCTTAATTGTTCACCCCT 60.273 52.381 0.00 0.00 0.00 4.79
2732 3074 1.191535 GGCCCTTAATTGTTCACCCC 58.808 55.000 0.00 0.00 0.00 4.95
2733 3075 1.824852 CAGGCCCTTAATTGTTCACCC 59.175 52.381 0.00 0.00 0.00 4.61
2734 3076 2.525368 ACAGGCCCTTAATTGTTCACC 58.475 47.619 0.00 0.00 0.00 4.02
2735 3077 4.306600 CAAACAGGCCCTTAATTGTTCAC 58.693 43.478 0.00 0.00 32.97 3.18
2736 3078 3.323403 CCAAACAGGCCCTTAATTGTTCA 59.677 43.478 0.00 0.00 32.97 3.18
2737 3079 3.323691 ACCAAACAGGCCCTTAATTGTTC 59.676 43.478 0.00 0.00 43.14 3.18
2738 3080 3.313791 ACCAAACAGGCCCTTAATTGTT 58.686 40.909 0.00 0.00 43.14 2.83
2739 3081 2.970987 ACCAAACAGGCCCTTAATTGT 58.029 42.857 0.00 0.00 43.14 2.71
2740 3082 3.306710 GGAACCAAACAGGCCCTTAATTG 60.307 47.826 0.00 0.00 43.14 2.32
2741 3083 2.903784 GGAACCAAACAGGCCCTTAATT 59.096 45.455 0.00 0.00 43.14 1.40
2742 3084 2.158234 TGGAACCAAACAGGCCCTTAAT 60.158 45.455 0.00 0.00 43.14 1.40
2743 3085 1.218196 TGGAACCAAACAGGCCCTTAA 59.782 47.619 0.00 0.00 43.14 1.85
2744 3086 0.854218 TGGAACCAAACAGGCCCTTA 59.146 50.000 0.00 0.00 43.14 2.69
2745 3087 0.031616 TTGGAACCAAACAGGCCCTT 60.032 50.000 0.00 0.00 43.14 3.95
2746 3088 0.031616 TTTGGAACCAAACAGGCCCT 60.032 50.000 14.02 0.00 43.14 5.19
2747 3089 1.055849 ATTTGGAACCAAACAGGCCC 58.944 50.000 19.23 0.00 46.80 5.80
2748 3090 3.323691 ACTTATTTGGAACCAAACAGGCC 59.676 43.478 19.23 0.00 46.80 5.19
2749 3091 4.038642 TGACTTATTTGGAACCAAACAGGC 59.961 41.667 19.23 18.98 46.80 4.85
2750 3092 5.508994 GGTGACTTATTTGGAACCAAACAGG 60.509 44.000 19.23 12.17 46.80 4.00
2751 3093 5.068460 TGGTGACTTATTTGGAACCAAACAG 59.932 40.000 19.23 18.64 46.80 3.16
2752 3094 4.956700 TGGTGACTTATTTGGAACCAAACA 59.043 37.500 19.23 7.15 46.80 2.83
2753 3095 5.523438 TGGTGACTTATTTGGAACCAAAC 57.477 39.130 19.23 8.57 46.80 2.93
2754 3096 5.659079 AGTTGGTGACTTATTTGGAACCAAA 59.341 36.000 19.15 19.15 46.21 3.28
2755 3097 5.205056 AGTTGGTGACTTATTTGGAACCAA 58.795 37.500 1.83 1.83 43.50 3.67
2756 3098 4.798882 AGTTGGTGACTTATTTGGAACCA 58.201 39.130 0.00 0.00 33.92 3.67
2757 3099 5.784578 AAGTTGGTGACTTATTTGGAACC 57.215 39.130 0.00 0.00 46.61 3.62
2768 3110 7.170998 CACTTTTCGACTTATAAGTTGGTGACT 59.829 37.037 25.99 9.24 39.88 3.41
2769 3111 7.170320 TCACTTTTCGACTTATAAGTTGGTGAC 59.830 37.037 25.99 10.35 39.88 3.67
2770 3112 7.211573 TCACTTTTCGACTTATAAGTTGGTGA 58.788 34.615 25.99 25.09 39.88 4.02
2771 3113 7.416154 TCACTTTTCGACTTATAAGTTGGTG 57.584 36.000 25.99 23.76 39.88 4.17
2772 3114 8.441312 TTTCACTTTTCGACTTATAAGTTGGT 57.559 30.769 25.99 16.17 39.88 3.67
2773 3115 9.724839 TTTTTCACTTTTCGACTTATAAGTTGG 57.275 29.630 25.99 17.93 39.88 3.77
2797 3139 8.611757 GTCTGTTTGGCAAAATAAGTCATTTTT 58.388 29.630 15.29 0.00 42.93 1.94
2798 3140 7.226523 GGTCTGTTTGGCAAAATAAGTCATTTT 59.773 33.333 15.29 0.00 45.72 1.82
2799 3141 6.705825 GGTCTGTTTGGCAAAATAAGTCATTT 59.294 34.615 15.29 0.00 38.54 2.32
2800 3142 6.223120 GGTCTGTTTGGCAAAATAAGTCATT 58.777 36.000 15.29 0.00 0.00 2.57
2801 3143 5.279456 GGGTCTGTTTGGCAAAATAAGTCAT 60.279 40.000 15.29 0.00 0.00 3.06
2802 3144 4.038642 GGGTCTGTTTGGCAAAATAAGTCA 59.961 41.667 15.29 6.39 0.00 3.41
2803 3145 4.038642 TGGGTCTGTTTGGCAAAATAAGTC 59.961 41.667 15.29 10.05 0.00 3.01
2804 3146 3.964031 TGGGTCTGTTTGGCAAAATAAGT 59.036 39.130 15.29 0.00 0.00 2.24
2805 3147 4.599047 TGGGTCTGTTTGGCAAAATAAG 57.401 40.909 15.29 12.47 0.00 1.73
2806 3148 4.407296 AGTTGGGTCTGTTTGGCAAAATAA 59.593 37.500 15.29 2.73 0.00 1.40
2807 3149 3.964031 AGTTGGGTCTGTTTGGCAAAATA 59.036 39.130 15.29 6.13 0.00 1.40
2808 3150 2.771372 AGTTGGGTCTGTTTGGCAAAAT 59.229 40.909 15.29 0.00 0.00 1.82
2809 3151 2.183679 AGTTGGGTCTGTTTGGCAAAA 58.816 42.857 15.29 4.59 0.00 2.44
2810 3152 1.859302 AGTTGGGTCTGTTTGGCAAA 58.141 45.000 8.93 8.93 0.00 3.68
2811 3153 1.859302 AAGTTGGGTCTGTTTGGCAA 58.141 45.000 0.00 0.00 0.00 4.52
2812 3154 2.738587 TAAGTTGGGTCTGTTTGGCA 57.261 45.000 0.00 0.00 0.00 4.92
2813 3155 4.765339 ACTTATAAGTTGGGTCTGTTTGGC 59.235 41.667 12.50 0.00 35.21 4.52
2814 3156 6.001460 TGACTTATAAGTTGGGTCTGTTTGG 58.999 40.000 18.96 0.00 39.88 3.28
2815 3157 7.687941 ATGACTTATAAGTTGGGTCTGTTTG 57.312 36.000 18.96 0.00 39.88 2.93
2816 3158 9.449719 CTTATGACTTATAAGTTGGGTCTGTTT 57.550 33.333 18.96 0.00 42.11 2.83
2829 3171 6.354130 GGGTGGAGCAACTTATGACTTATAA 58.646 40.000 0.00 0.00 0.00 0.98
2830 3172 5.163237 GGGGTGGAGCAACTTATGACTTATA 60.163 44.000 0.00 0.00 0.00 0.98
2831 3173 4.385310 GGGGTGGAGCAACTTATGACTTAT 60.385 45.833 0.00 0.00 0.00 1.73
2832 3174 3.054655 GGGGTGGAGCAACTTATGACTTA 60.055 47.826 0.00 0.00 0.00 2.24
2833 3175 2.290960 GGGGTGGAGCAACTTATGACTT 60.291 50.000 0.00 0.00 0.00 3.01
2834 3176 1.282157 GGGGTGGAGCAACTTATGACT 59.718 52.381 0.00 0.00 0.00 3.41
2835 3177 1.004277 TGGGGTGGAGCAACTTATGAC 59.996 52.381 0.00 0.00 0.00 3.06
2836 3178 1.367346 TGGGGTGGAGCAACTTATGA 58.633 50.000 0.00 0.00 0.00 2.15
2837 3179 1.818674 GTTGGGGTGGAGCAACTTATG 59.181 52.381 0.00 0.00 0.00 1.90
2838 3180 1.710809 AGTTGGGGTGGAGCAACTTAT 59.289 47.619 0.00 0.00 34.63 1.73
2839 3181 1.145571 AGTTGGGGTGGAGCAACTTA 58.854 50.000 0.00 0.00 34.63 2.24
2840 3182 0.261696 AAGTTGGGGTGGAGCAACTT 59.738 50.000 0.00 0.00 41.36 2.66
2841 3183 1.145571 TAAGTTGGGGTGGAGCAACT 58.854 50.000 0.00 0.00 39.27 3.16
2842 3184 1.989706 TTAAGTTGGGGTGGAGCAAC 58.010 50.000 0.00 0.00 0.00 4.17
2843 3185 2.696187 GTTTTAAGTTGGGGTGGAGCAA 59.304 45.455 0.00 0.00 0.00 3.91
2844 3186 2.091555 AGTTTTAAGTTGGGGTGGAGCA 60.092 45.455 0.00 0.00 0.00 4.26
2845 3187 2.594131 AGTTTTAAGTTGGGGTGGAGC 58.406 47.619 0.00 0.00 0.00 4.70
2846 3188 7.668469 ACTTATAAGTTTTAAGTTGGGGTGGAG 59.332 37.037 12.50 0.00 36.70 3.86
2847 3189 7.528675 ACTTATAAGTTTTAAGTTGGGGTGGA 58.471 34.615 12.50 0.00 36.70 4.02
2848 3190 7.449086 TGACTTATAAGTTTTAAGTTGGGGTGG 59.551 37.037 18.96 0.00 39.40 4.61
2849 3191 8.294577 GTGACTTATAAGTTTTAAGTTGGGGTG 58.705 37.037 18.96 0.00 39.40 4.61
2850 3192 7.449395 GGTGACTTATAAGTTTTAAGTTGGGGT 59.551 37.037 18.96 0.00 39.40 4.95
2851 3193 7.094075 GGGTGACTTATAAGTTTTAAGTTGGGG 60.094 40.741 18.96 0.00 39.40 4.96
2852 3194 7.094075 GGGGTGACTTATAAGTTTTAAGTTGGG 60.094 40.741 18.96 0.00 39.40 4.12
2853 3195 7.094075 GGGGGTGACTTATAAGTTTTAAGTTGG 60.094 40.741 18.96 0.00 39.40 3.77
2854 3196 7.668469 AGGGGGTGACTTATAAGTTTTAAGTTG 59.332 37.037 18.96 0.00 39.40 3.16
2855 3197 7.762610 AGGGGGTGACTTATAAGTTTTAAGTT 58.237 34.615 18.96 2.13 39.40 2.66
2856 3198 7.339177 AGGGGGTGACTTATAAGTTTTAAGT 57.661 36.000 18.96 15.86 41.41 2.24
2857 3199 8.645814 AAAGGGGGTGACTTATAAGTTTTAAG 57.354 34.615 18.96 10.49 39.88 1.85
2858 3200 8.862085 CAAAAGGGGGTGACTTATAAGTTTTAA 58.138 33.333 18.96 3.77 39.88 1.52
2859 3201 7.039574 GCAAAAGGGGGTGACTTATAAGTTTTA 60.040 37.037 18.96 6.80 39.88 1.52
2860 3202 6.239487 GCAAAAGGGGGTGACTTATAAGTTTT 60.239 38.462 18.96 10.67 39.88 2.43
2861 3203 5.245301 GCAAAAGGGGGTGACTTATAAGTTT 59.755 40.000 18.96 5.24 39.88 2.66
2862 3204 4.770531 GCAAAAGGGGGTGACTTATAAGTT 59.229 41.667 18.96 3.63 39.88 2.66
2863 3205 4.341487 GCAAAAGGGGGTGACTTATAAGT 58.659 43.478 18.05 18.05 43.16 2.24
2864 3206 3.377172 CGCAAAAGGGGGTGACTTATAAG 59.623 47.826 11.05 11.05 0.00 1.73
2865 3207 3.244981 ACGCAAAAGGGGGTGACTTATAA 60.245 43.478 0.00 0.00 32.17 0.98
2866 3208 2.306512 ACGCAAAAGGGGGTGACTTATA 59.693 45.455 0.00 0.00 32.17 0.98
2867 3209 1.074889 ACGCAAAAGGGGGTGACTTAT 59.925 47.619 0.00 0.00 32.17 1.73
2868 3210 0.475044 ACGCAAAAGGGGGTGACTTA 59.525 50.000 0.00 0.00 32.17 2.24
2869 3211 1.229076 ACGCAAAAGGGGGTGACTT 59.771 52.632 0.00 0.00 32.17 3.01
2870 3212 2.923837 ACGCAAAAGGGGGTGACT 59.076 55.556 0.00 0.00 32.17 3.41
2878 3220 1.362355 GTGGAACCCACGCAAAAGG 59.638 57.895 0.00 0.00 44.95 3.11
2910 3252 6.155393 TGACCACACCTTTTCACCTTATTTTT 59.845 34.615 0.00 0.00 0.00 1.94
2911 3253 5.659079 TGACCACACCTTTTCACCTTATTTT 59.341 36.000 0.00 0.00 0.00 1.82
2912 3254 5.205056 TGACCACACCTTTTCACCTTATTT 58.795 37.500 0.00 0.00 0.00 1.40
2913 3255 4.798882 TGACCACACCTTTTCACCTTATT 58.201 39.130 0.00 0.00 0.00 1.40
2914 3256 4.398319 CTGACCACACCTTTTCACCTTAT 58.602 43.478 0.00 0.00 0.00 1.73
2915 3257 3.434453 CCTGACCACACCTTTTCACCTTA 60.434 47.826 0.00 0.00 0.00 2.69
2916 3258 2.654863 CTGACCACACCTTTTCACCTT 58.345 47.619 0.00 0.00 0.00 3.50
2917 3259 1.133792 CCTGACCACACCTTTTCACCT 60.134 52.381 0.00 0.00 0.00 4.00
2918 3260 1.318576 CCTGACCACACCTTTTCACC 58.681 55.000 0.00 0.00 0.00 4.02
2919 3261 1.676006 CACCTGACCACACCTTTTCAC 59.324 52.381 0.00 0.00 0.00 3.18
2920 3262 1.562008 TCACCTGACCACACCTTTTCA 59.438 47.619 0.00 0.00 0.00 2.69
2921 3263 1.947456 GTCACCTGACCACACCTTTTC 59.053 52.381 0.00 0.00 39.07 2.29
2922 3264 1.564348 AGTCACCTGACCACACCTTTT 59.436 47.619 1.66 0.00 45.85 2.27
2923 3265 1.213296 AGTCACCTGACCACACCTTT 58.787 50.000 1.66 0.00 45.85 3.11
2924 3266 1.213296 AAGTCACCTGACCACACCTT 58.787 50.000 1.66 0.00 45.85 3.50
2925 3267 2.097110 TAAGTCACCTGACCACACCT 57.903 50.000 1.66 0.00 45.85 4.00
2926 3268 4.020485 ACTTATAAGTCACCTGACCACACC 60.020 45.833 12.50 0.00 45.85 4.16
2927 3269 5.148651 ACTTATAAGTCACCTGACCACAC 57.851 43.478 12.50 0.00 45.85 3.82
2940 3282 7.936847 TGTTTGGTTGTCATCTGACTTATAAGT 59.063 33.333 18.05 18.05 44.99 2.24
2941 3283 8.322906 TGTTTGGTTGTCATCTGACTTATAAG 57.677 34.615 11.05 11.05 44.99 1.73
2942 3284 7.390440 CCTGTTTGGTTGTCATCTGACTTATAA 59.610 37.037 11.35 0.00 44.99 0.98
2943 3285 6.878923 CCTGTTTGGTTGTCATCTGACTTATA 59.121 38.462 11.35 0.00 44.99 0.98
2944 3286 5.707298 CCTGTTTGGTTGTCATCTGACTTAT 59.293 40.000 11.35 0.00 44.99 1.73
2945 3287 5.063204 CCTGTTTGGTTGTCATCTGACTTA 58.937 41.667 11.35 0.00 44.99 2.24
2946 3288 3.885297 CCTGTTTGGTTGTCATCTGACTT 59.115 43.478 11.35 0.00 44.99 3.01
2947 3289 3.480470 CCTGTTTGGTTGTCATCTGACT 58.520 45.455 11.35 0.00 44.99 3.41
2948 3290 2.030805 GCCTGTTTGGTTGTCATCTGAC 60.031 50.000 3.34 3.34 40.76 3.51
2949 3291 2.229792 GCCTGTTTGGTTGTCATCTGA 58.770 47.619 0.00 0.00 38.35 3.27
2950 3292 1.069022 CGCCTGTTTGGTTGTCATCTG 60.069 52.381 0.00 0.00 38.35 2.90
2951 3293 1.238439 CGCCTGTTTGGTTGTCATCT 58.762 50.000 0.00 0.00 38.35 2.90
2952 3294 0.951558 ACGCCTGTTTGGTTGTCATC 59.048 50.000 0.00 0.00 38.35 2.92
2953 3295 0.667993 CACGCCTGTTTGGTTGTCAT 59.332 50.000 0.00 0.00 38.35 3.06
2954 3296 0.393132 TCACGCCTGTTTGGTTGTCA 60.393 50.000 0.00 0.00 38.35 3.58
2955 3297 0.028902 GTCACGCCTGTTTGGTTGTC 59.971 55.000 0.00 0.00 38.35 3.18
2956 3298 0.393808 AGTCACGCCTGTTTGGTTGT 60.394 50.000 0.00 0.00 38.35 3.32
2957 3299 0.738389 AAGTCACGCCTGTTTGGTTG 59.262 50.000 0.00 0.00 38.35 3.77
2958 3300 2.335316 TAAGTCACGCCTGTTTGGTT 57.665 45.000 0.00 0.00 38.35 3.67
2959 3301 2.561478 ATAAGTCACGCCTGTTTGGT 57.439 45.000 0.00 0.00 38.35 3.67
2960 3302 4.000988 ACTTATAAGTCACGCCTGTTTGG 58.999 43.478 12.50 0.00 32.86 3.28
2973 3315 9.269453 GTGACTTAAAACCAGTGACTTATAAGT 57.731 33.333 18.05 18.05 43.16 2.24
2974 3316 8.718734 GGTGACTTAAAACCAGTGACTTATAAG 58.281 37.037 11.05 11.05 36.41 1.73
2975 3317 8.434392 AGGTGACTTAAAACCAGTGACTTATAA 58.566 33.333 0.00 0.00 37.44 0.98
2976 3318 7.876068 CAGGTGACTTAAAACCAGTGACTTATA 59.124 37.037 0.00 0.00 40.21 0.98
2977 3319 6.710744 CAGGTGACTTAAAACCAGTGACTTAT 59.289 38.462 0.00 0.00 40.21 1.73
2978 3320 6.053005 CAGGTGACTTAAAACCAGTGACTTA 58.947 40.000 0.00 0.00 40.21 2.24
2979 3321 4.881850 CAGGTGACTTAAAACCAGTGACTT 59.118 41.667 0.00 0.00 40.21 3.01
2980 3322 4.163458 TCAGGTGACTTAAAACCAGTGACT 59.837 41.667 0.00 0.00 40.21 3.41
2981 3323 4.272748 GTCAGGTGACTTAAAACCAGTGAC 59.727 45.833 2.72 6.43 41.65 3.67
2982 3324 4.448210 GTCAGGTGACTTAAAACCAGTGA 58.552 43.478 2.72 0.00 41.65 3.41
2983 3325 3.564225 GGTCAGGTGACTTAAAACCAGTG 59.436 47.826 9.90 0.00 44.20 3.66
2984 3326 3.201266 TGGTCAGGTGACTTAAAACCAGT 59.799 43.478 9.90 0.00 44.20 4.00
2985 3327 3.815809 TGGTCAGGTGACTTAAAACCAG 58.184 45.455 9.90 0.00 44.20 4.00
2986 3328 3.935818 TGGTCAGGTGACTTAAAACCA 57.064 42.857 9.90 0.00 44.20 3.67
2987 3329 4.399934 TGTTTGGTCAGGTGACTTAAAACC 59.600 41.667 20.92 10.73 44.20 3.27
2988 3330 5.355910 TCTGTTTGGTCAGGTGACTTAAAAC 59.644 40.000 18.99 18.99 44.20 2.43
2989 3331 5.355910 GTCTGTTTGGTCAGGTGACTTAAAA 59.644 40.000 9.90 6.19 44.20 1.52
2990 3332 4.879545 GTCTGTTTGGTCAGGTGACTTAAA 59.120 41.667 9.90 8.89 44.20 1.52
2991 3333 4.448210 GTCTGTTTGGTCAGGTGACTTAA 58.552 43.478 9.90 3.70 44.20 1.85
2992 3334 3.181458 GGTCTGTTTGGTCAGGTGACTTA 60.181 47.826 9.90 0.00 44.20 2.24
2993 3335 2.421529 GGTCTGTTTGGTCAGGTGACTT 60.422 50.000 9.90 0.00 44.20 3.01
2994 3336 1.141053 GGTCTGTTTGGTCAGGTGACT 59.859 52.381 9.90 0.00 44.20 3.41
2995 3337 1.594331 GGTCTGTTTGGTCAGGTGAC 58.406 55.000 1.17 1.17 44.04 3.67
2996 3338 0.472471 GGGTCTGTTTGGTCAGGTGA 59.528 55.000 0.00 0.00 36.25 4.02
2997 3339 0.474184 AGGGTCTGTTTGGTCAGGTG 59.526 55.000 0.00 0.00 36.25 4.00
2998 3340 2.112279 TAGGGTCTGTTTGGTCAGGT 57.888 50.000 0.00 0.00 36.25 4.00
2999 3341 3.502123 TTTAGGGTCTGTTTGGTCAGG 57.498 47.619 0.00 0.00 36.25 3.86
3000 3342 4.714632 TCTTTTAGGGTCTGTTTGGTCAG 58.285 43.478 0.00 0.00 36.85 3.51
3001 3343 4.781775 TCTTTTAGGGTCTGTTTGGTCA 57.218 40.909 0.00 0.00 0.00 4.02
3002 3344 4.519350 CCTTCTTTTAGGGTCTGTTTGGTC 59.481 45.833 0.00 0.00 0.00 4.02
3003 3345 4.167307 TCCTTCTTTTAGGGTCTGTTTGGT 59.833 41.667 0.00 0.00 35.90 3.67
3004 3346 4.725490 TCCTTCTTTTAGGGTCTGTTTGG 58.275 43.478 0.00 0.00 35.90 3.28
3005 3347 6.062095 TCTTCCTTCTTTTAGGGTCTGTTTG 58.938 40.000 0.00 0.00 35.90 2.93
3006 3348 6.262056 TCTTCCTTCTTTTAGGGTCTGTTT 57.738 37.500 0.00 0.00 35.90 2.83
3007 3349 5.746361 GCTCTTCCTTCTTTTAGGGTCTGTT 60.746 44.000 0.00 0.00 35.90 3.16
3008 3350 4.263112 GCTCTTCCTTCTTTTAGGGTCTGT 60.263 45.833 0.00 0.00 35.90 3.41
3009 3351 4.257731 GCTCTTCCTTCTTTTAGGGTCTG 58.742 47.826 0.00 0.00 35.90 3.51
3010 3352 3.055747 CGCTCTTCCTTCTTTTAGGGTCT 60.056 47.826 0.00 0.00 35.90 3.85
3011 3353 3.263261 CGCTCTTCCTTCTTTTAGGGTC 58.737 50.000 0.00 0.00 35.90 4.46
3012 3354 2.027100 CCGCTCTTCCTTCTTTTAGGGT 60.027 50.000 0.00 0.00 35.90 4.34
3013 3355 2.633488 CCGCTCTTCCTTCTTTTAGGG 58.367 52.381 0.00 0.00 35.90 3.53
3014 3356 2.010497 GCCGCTCTTCCTTCTTTTAGG 58.990 52.381 0.00 0.00 36.59 2.69
3015 3357 2.699954 TGCCGCTCTTCCTTCTTTTAG 58.300 47.619 0.00 0.00 0.00 1.85
3016 3358 2.851263 TGCCGCTCTTCCTTCTTTTA 57.149 45.000 0.00 0.00 0.00 1.52
3017 3359 1.981256 TTGCCGCTCTTCCTTCTTTT 58.019 45.000 0.00 0.00 0.00 2.27
3018 3360 1.882623 CTTTGCCGCTCTTCCTTCTTT 59.117 47.619 0.00 0.00 0.00 2.52
3019 3361 1.528129 CTTTGCCGCTCTTCCTTCTT 58.472 50.000 0.00 0.00 0.00 2.52
3020 3362 0.957888 GCTTTGCCGCTCTTCCTTCT 60.958 55.000 0.00 0.00 0.00 2.85
3021 3363 1.237285 TGCTTTGCCGCTCTTCCTTC 61.237 55.000 0.00 0.00 0.00 3.46
3022 3364 0.823356 TTGCTTTGCCGCTCTTCCTT 60.823 50.000 0.00 0.00 0.00 3.36
3023 3365 1.228245 TTGCTTTGCCGCTCTTCCT 60.228 52.632 0.00 0.00 0.00 3.36
3024 3366 1.211190 CTTGCTTTGCCGCTCTTCC 59.789 57.895 0.00 0.00 0.00 3.46
3025 3367 1.211190 CCTTGCTTTGCCGCTCTTC 59.789 57.895 0.00 0.00 0.00 2.87
3026 3368 1.228245 TCCTTGCTTTGCCGCTCTT 60.228 52.632 0.00 0.00 0.00 2.85
3027 3369 1.673665 CTCCTTGCTTTGCCGCTCT 60.674 57.895 0.00 0.00 0.00 4.09
3028 3370 1.916697 GACTCCTTGCTTTGCCGCTC 61.917 60.000 0.00 0.00 0.00 5.03
3029 3371 1.968540 GACTCCTTGCTTTGCCGCT 60.969 57.895 0.00 0.00 0.00 5.52
3030 3372 2.192608 CTGACTCCTTGCTTTGCCGC 62.193 60.000 0.00 0.00 0.00 6.53
3031 3373 1.580845 CCTGACTCCTTGCTTTGCCG 61.581 60.000 0.00 0.00 0.00 5.69
3032 3374 0.250901 TCCTGACTCCTTGCTTTGCC 60.251 55.000 0.00 0.00 0.00 4.52
3033 3375 1.609208 TTCCTGACTCCTTGCTTTGC 58.391 50.000 0.00 0.00 0.00 3.68
3034 3376 4.142182 TGTTTTTCCTGACTCCTTGCTTTG 60.142 41.667 0.00 0.00 0.00 2.77
3035 3377 4.023291 TGTTTTTCCTGACTCCTTGCTTT 58.977 39.130 0.00 0.00 0.00 3.51
3036 3378 3.381590 GTGTTTTTCCTGACTCCTTGCTT 59.618 43.478 0.00 0.00 0.00 3.91
3037 3379 2.952310 GTGTTTTTCCTGACTCCTTGCT 59.048 45.455 0.00 0.00 0.00 3.91
3038 3380 2.952310 AGTGTTTTTCCTGACTCCTTGC 59.048 45.455 0.00 0.00 0.00 4.01
3039 3381 3.243201 GCAGTGTTTTTCCTGACTCCTTG 60.243 47.826 0.00 0.00 0.00 3.61
3040 3382 2.952310 GCAGTGTTTTTCCTGACTCCTT 59.048 45.455 0.00 0.00 0.00 3.36
3041 3383 2.173569 AGCAGTGTTTTTCCTGACTCCT 59.826 45.455 0.00 0.00 0.00 3.69
3042 3384 2.550180 GAGCAGTGTTTTTCCTGACTCC 59.450 50.000 0.00 0.00 31.49 3.85
3043 3385 2.550180 GGAGCAGTGTTTTTCCTGACTC 59.450 50.000 0.00 0.00 34.23 3.36
3044 3386 2.173569 AGGAGCAGTGTTTTTCCTGACT 59.826 45.455 6.78 0.00 38.59 3.41
3045 3387 2.576615 AGGAGCAGTGTTTTTCCTGAC 58.423 47.619 6.78 0.00 38.59 3.51
3046 3388 3.807209 GCTAGGAGCAGTGTTTTTCCTGA 60.807 47.826 14.12 3.11 41.89 3.86
3047 3389 2.485814 GCTAGGAGCAGTGTTTTTCCTG 59.514 50.000 14.12 8.09 41.89 3.86
3048 3390 2.553247 GGCTAGGAGCAGTGTTTTTCCT 60.553 50.000 10.86 10.86 44.75 3.36
3049 3391 1.813178 GGCTAGGAGCAGTGTTTTTCC 59.187 52.381 0.21 0.00 44.75 3.13
3050 3392 1.464997 CGGCTAGGAGCAGTGTTTTTC 59.535 52.381 0.21 0.00 44.75 2.29
3051 3393 1.523758 CGGCTAGGAGCAGTGTTTTT 58.476 50.000 0.21 0.00 44.75 1.94
3052 3394 0.321653 CCGGCTAGGAGCAGTGTTTT 60.322 55.000 0.21 0.00 44.75 2.43
3053 3395 1.296715 CCGGCTAGGAGCAGTGTTT 59.703 57.895 0.21 0.00 44.75 2.83
3054 3396 2.982130 CCGGCTAGGAGCAGTGTT 59.018 61.111 0.21 0.00 44.75 3.32
3055 3397 3.775654 GCCGGCTAGGAGCAGTGT 61.776 66.667 22.15 0.00 44.75 3.55
3056 3398 4.880537 CGCCGGCTAGGAGCAGTG 62.881 72.222 26.68 0.00 44.75 3.66
3058 3400 4.277593 CTCGCCGGCTAGGAGCAG 62.278 72.222 26.68 6.06 44.75 4.24
3061 3403 2.677765 TAGACCTCGCCGGCTAGGAG 62.678 65.000 43.96 31.81 45.00 3.69
3062 3404 2.677765 CTAGACCTCGCCGGCTAGGA 62.678 65.000 43.96 26.05 45.00 2.94
3063 3405 2.203308 TAGACCTCGCCGGCTAGG 60.203 66.667 38.04 38.04 44.97 3.02
3064 3406 2.262303 CCTAGACCTCGCCGGCTAG 61.262 68.421 26.68 23.49 38.33 3.42
3065 3407 2.203308 CCTAGACCTCGCCGGCTA 60.203 66.667 26.68 13.77 35.61 3.93
3068 3410 3.905678 CAGCCTAGACCTCGCCGG 61.906 72.222 0.00 0.00 39.35 6.13
3069 3411 3.905678 CCAGCCTAGACCTCGCCG 61.906 72.222 0.00 0.00 0.00 6.46
3070 3412 4.228567 GCCAGCCTAGACCTCGCC 62.229 72.222 0.00 0.00 0.00 5.54
3071 3413 4.577246 CGCCAGCCTAGACCTCGC 62.577 72.222 0.00 0.00 0.00 5.03
3072 3414 2.415608 TTCGCCAGCCTAGACCTCG 61.416 63.158 0.00 0.00 0.00 4.63
3073 3415 1.142097 GTTCGCCAGCCTAGACCTC 59.858 63.158 0.00 0.00 0.00 3.85
3074 3416 2.711922 CGTTCGCCAGCCTAGACCT 61.712 63.158 0.00 0.00 0.00 3.85
3075 3417 2.202756 CGTTCGCCAGCCTAGACC 60.203 66.667 0.00 0.00 0.00 3.85
3076 3418 2.886124 GCGTTCGCCAGCCTAGAC 60.886 66.667 5.87 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.