Multiple sequence alignment - TraesCS7D01G396200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G396200 chr7D 100.000 5312 0 0 1 5312 510712629 510707318 0.000000e+00 9810.0
1 TraesCS7D01G396200 chr7A 87.923 3163 224 67 1600 4647 581436139 581433020 0.000000e+00 3579.0
2 TraesCS7D01G396200 chr7A 83.945 1389 140 39 256 1596 581437540 581436187 0.000000e+00 1253.0
3 TraesCS7D01G396200 chr7A 93.115 581 18 9 4736 5312 581432979 581432417 0.000000e+00 832.0
4 TraesCS7D01G396200 chr7B 86.475 2610 200 67 1600 4133 539236182 539233650 0.000000e+00 2723.0
5 TraesCS7D01G396200 chr7B 91.635 789 28 9 4128 4905 539233619 539232858 0.000000e+00 1057.0
6 TraesCS7D01G396200 chr7B 86.220 820 93 16 264 1071 539237700 539236889 0.000000e+00 870.0
7 TraesCS7D01G396200 chr7B 95.135 370 15 3 4944 5312 539232855 539232488 9.920000e-162 580.0
8 TraesCS7D01G396200 chr7B 84.352 409 43 10 1200 1596 539236629 539236230 1.080000e-101 381.0
9 TraesCS7D01G396200 chr5D 94.444 270 13 2 4957 5226 390710146 390709879 1.060000e-111 414.0
10 TraesCS7D01G396200 chr5D 83.043 230 22 5 4319 4538 390738549 390738327 5.430000e-45 193.0
11 TraesCS7D01G396200 chr5B 89.456 294 16 5 4934 5225 471138163 471137883 1.820000e-94 357.0
12 TraesCS7D01G396200 chr5B 83.824 204 20 3 4319 4512 471139068 471138868 1.180000e-41 182.0
13 TraesCS7D01G396200 chr1D 92.647 204 15 0 1 204 482343624 482343827 1.450000e-75 294.0
14 TraesCS7D01G396200 chr3B 89.706 204 21 0 1 204 680224178 680224381 1.470000e-65 261.0
15 TraesCS7D01G396200 chr6B 88.725 204 23 0 1 204 645423290 645423493 3.180000e-62 250.0
16 TraesCS7D01G396200 chr6A 100.000 48 0 0 4408 4455 39607505 39607552 7.330000e-14 89.8
17 TraesCS7D01G396200 chr6A 98.000 50 0 1 4408 4456 39566019 39566068 9.480000e-13 86.1
18 TraesCS7D01G396200 chr6A 98.000 50 0 1 4408 4456 63252085 63252134 9.480000e-13 86.1
19 TraesCS7D01G396200 chr6A 98.000 50 0 1 4408 4456 165864146 165864097 9.480000e-13 86.1
20 TraesCS7D01G396200 chr4B 100.000 48 0 0 4408 4455 260433313 260433360 7.330000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G396200 chr7D 510707318 510712629 5311 True 9810.0 9810 100.000000 1 5312 1 chr7D.!!$R1 5311
1 TraesCS7D01G396200 chr7A 581432417 581437540 5123 True 1888.0 3579 88.327667 256 5312 3 chr7A.!!$R1 5056
2 TraesCS7D01G396200 chr7B 539232488 539237700 5212 True 1122.2 2723 88.763400 264 5312 5 chr7B.!!$R1 5048
3 TraesCS7D01G396200 chr5B 471137883 471139068 1185 True 269.5 357 86.640000 4319 5225 2 chr5B.!!$R1 906

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
973 1014 0.033405 TGGGTAGGGTTCCTCTCGAG 60.033 60.0 5.93 5.93 34.61 4.04 F
1416 1615 0.096454 GTTTGGACGAGGCGTAATGC 59.904 55.0 0.00 0.00 41.37 3.56 F
1499 1710 0.107993 TGCTGTATCTGTGCTGCTCC 60.108 55.0 0.00 0.00 36.22 4.70 F
1673 1936 0.108424 ACTGATCAGTTGCGCCTCTC 60.108 55.0 22.89 0.00 38.83 3.20 F
2609 2896 0.110486 GTGATGGAGGTGGTGGTTGT 59.890 55.0 0.00 0.00 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1824 2087 0.107508 CACCATCGGCATCTCCTTGT 60.108 55.0 0.0 0.0 0.00 3.16 R
2447 2734 0.255890 AGTGTGAACCTGCCACTTGT 59.744 50.0 0.0 0.0 36.03 3.16 R
2521 2808 1.121407 ACCACACTGACTGCTAGGCA 61.121 55.0 0.0 0.0 36.92 4.75 R
3629 3962 0.319083 CACCATGCTGCCACACATTT 59.681 50.0 0.0 0.0 0.00 2.32 R
4362 4749 0.111639 TGCCCACCCCTACAAAAGTC 59.888 55.0 0.0 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.490379 ACTATGATTCCTCCACGTAAATTTATC 57.510 33.333 0.31 0.00 0.00 1.75
28 29 9.712305 CTATGATTCCTCCACGTAAATTTATCT 57.288 33.333 0.31 0.00 0.00 1.98
29 30 8.608844 ATGATTCCTCCACGTAAATTTATCTC 57.391 34.615 0.31 0.00 0.00 2.75
30 31 6.990349 TGATTCCTCCACGTAAATTTATCTCC 59.010 38.462 0.31 0.00 0.00 3.71
31 32 5.286267 TCCTCCACGTAAATTTATCTCCC 57.714 43.478 0.31 0.00 0.00 4.30
32 33 4.717778 TCCTCCACGTAAATTTATCTCCCA 59.282 41.667 0.31 0.00 0.00 4.37
33 34 4.814771 CCTCCACGTAAATTTATCTCCCAC 59.185 45.833 0.31 0.00 0.00 4.61
34 35 5.423704 TCCACGTAAATTTATCTCCCACA 57.576 39.130 0.31 0.00 0.00 4.17
35 36 5.996644 TCCACGTAAATTTATCTCCCACAT 58.003 37.500 0.31 0.00 0.00 3.21
36 37 7.127012 TCCACGTAAATTTATCTCCCACATA 57.873 36.000 0.31 0.00 0.00 2.29
37 38 7.566569 TCCACGTAAATTTATCTCCCACATAA 58.433 34.615 0.31 0.00 0.00 1.90
38 39 7.496591 TCCACGTAAATTTATCTCCCACATAAC 59.503 37.037 0.31 0.00 0.00 1.89
39 40 7.255001 CCACGTAAATTTATCTCCCACATAACC 60.255 40.741 0.31 0.00 0.00 2.85
40 41 6.480981 ACGTAAATTTATCTCCCACATAACCG 59.519 38.462 0.31 0.00 0.00 4.44
41 42 6.702723 CGTAAATTTATCTCCCACATAACCGA 59.297 38.462 0.31 0.00 0.00 4.69
42 43 6.937436 AAATTTATCTCCCACATAACCGAC 57.063 37.500 0.00 0.00 0.00 4.79
43 44 5.623956 ATTTATCTCCCACATAACCGACA 57.376 39.130 0.00 0.00 0.00 4.35
44 45 5.623956 TTTATCTCCCACATAACCGACAT 57.376 39.130 0.00 0.00 0.00 3.06
45 46 3.753294 ATCTCCCACATAACCGACATC 57.247 47.619 0.00 0.00 0.00 3.06
46 47 2.462723 TCTCCCACATAACCGACATCA 58.537 47.619 0.00 0.00 0.00 3.07
47 48 3.038280 TCTCCCACATAACCGACATCAT 58.962 45.455 0.00 0.00 0.00 2.45
48 49 4.219919 TCTCCCACATAACCGACATCATA 58.780 43.478 0.00 0.00 0.00 2.15
49 50 4.280929 TCTCCCACATAACCGACATCATAG 59.719 45.833 0.00 0.00 0.00 2.23
50 51 4.219919 TCCCACATAACCGACATCATAGA 58.780 43.478 0.00 0.00 0.00 1.98
51 52 4.280929 TCCCACATAACCGACATCATAGAG 59.719 45.833 0.00 0.00 0.00 2.43
52 53 4.280929 CCCACATAACCGACATCATAGAGA 59.719 45.833 0.00 0.00 0.00 3.10
53 54 5.047021 CCCACATAACCGACATCATAGAGAT 60.047 44.000 0.00 0.00 37.48 2.75
54 55 6.096036 CCACATAACCGACATCATAGAGATC 58.904 44.000 0.00 0.00 33.72 2.75
55 56 6.294731 CCACATAACCGACATCATAGAGATCA 60.295 42.308 0.00 0.00 33.72 2.92
56 57 6.584184 CACATAACCGACATCATAGAGATCAC 59.416 42.308 0.00 0.00 33.72 3.06
57 58 6.265422 ACATAACCGACATCATAGAGATCACA 59.735 38.462 0.00 0.00 33.72 3.58
58 59 5.598416 AACCGACATCATAGAGATCACAA 57.402 39.130 0.00 0.00 33.72 3.33
59 60 4.938080 ACCGACATCATAGAGATCACAAC 58.062 43.478 0.00 0.00 33.72 3.32
60 61 4.402474 ACCGACATCATAGAGATCACAACA 59.598 41.667 0.00 0.00 33.72 3.33
61 62 5.105351 ACCGACATCATAGAGATCACAACAA 60.105 40.000 0.00 0.00 33.72 2.83
62 63 5.812127 CCGACATCATAGAGATCACAACAAA 59.188 40.000 0.00 0.00 33.72 2.83
63 64 6.237942 CCGACATCATAGAGATCACAACAAAC 60.238 42.308 0.00 0.00 33.72 2.93
64 65 6.237942 CGACATCATAGAGATCACAACAAACC 60.238 42.308 0.00 0.00 33.72 3.27
65 66 6.475504 ACATCATAGAGATCACAACAAACCA 58.524 36.000 0.00 0.00 33.72 3.67
66 67 6.942005 ACATCATAGAGATCACAACAAACCAA 59.058 34.615 0.00 0.00 33.72 3.67
67 68 6.801539 TCATAGAGATCACAACAAACCAAC 57.198 37.500 0.00 0.00 0.00 3.77
68 69 5.408299 TCATAGAGATCACAACAAACCAACG 59.592 40.000 0.00 0.00 0.00 4.10
69 70 2.290641 AGAGATCACAACAAACCAACGC 59.709 45.455 0.00 0.00 0.00 4.84
70 71 1.336755 AGATCACAACAAACCAACGCC 59.663 47.619 0.00 0.00 0.00 5.68
71 72 1.336755 GATCACAACAAACCAACGCCT 59.663 47.619 0.00 0.00 0.00 5.52
72 73 0.736053 TCACAACAAACCAACGCCTC 59.264 50.000 0.00 0.00 0.00 4.70
73 74 0.738389 CACAACAAACCAACGCCTCT 59.262 50.000 0.00 0.00 0.00 3.69
74 75 1.021968 ACAACAAACCAACGCCTCTC 58.978 50.000 0.00 0.00 0.00 3.20
75 76 1.308998 CAACAAACCAACGCCTCTCT 58.691 50.000 0.00 0.00 0.00 3.10
76 77 1.002468 CAACAAACCAACGCCTCTCTG 60.002 52.381 0.00 0.00 0.00 3.35
77 78 0.468226 ACAAACCAACGCCTCTCTGA 59.532 50.000 0.00 0.00 0.00 3.27
78 79 1.134220 ACAAACCAACGCCTCTCTGAA 60.134 47.619 0.00 0.00 0.00 3.02
79 80 2.154462 CAAACCAACGCCTCTCTGAAT 58.846 47.619 0.00 0.00 0.00 2.57
80 81 2.100605 AACCAACGCCTCTCTGAATC 57.899 50.000 0.00 0.00 0.00 2.52
81 82 1.270907 ACCAACGCCTCTCTGAATCT 58.729 50.000 0.00 0.00 0.00 2.40
82 83 1.066573 ACCAACGCCTCTCTGAATCTG 60.067 52.381 0.00 0.00 0.00 2.90
83 84 1.066573 CCAACGCCTCTCTGAATCTGT 60.067 52.381 0.00 0.00 0.00 3.41
84 85 2.266554 CAACGCCTCTCTGAATCTGTC 58.733 52.381 0.00 0.00 0.00 3.51
85 86 0.820871 ACGCCTCTCTGAATCTGTCC 59.179 55.000 0.00 0.00 0.00 4.02
86 87 0.820226 CGCCTCTCTGAATCTGTCCA 59.180 55.000 0.00 0.00 0.00 4.02
87 88 1.411977 CGCCTCTCTGAATCTGTCCAT 59.588 52.381 0.00 0.00 0.00 3.41
88 89 2.802415 CGCCTCTCTGAATCTGTCCATG 60.802 54.545 0.00 0.00 0.00 3.66
89 90 2.836262 CCTCTCTGAATCTGTCCATGC 58.164 52.381 0.00 0.00 0.00 4.06
90 91 2.169978 CCTCTCTGAATCTGTCCATGCA 59.830 50.000 0.00 0.00 0.00 3.96
91 92 3.370209 CCTCTCTGAATCTGTCCATGCAA 60.370 47.826 0.00 0.00 0.00 4.08
92 93 3.870274 TCTCTGAATCTGTCCATGCAAG 58.130 45.455 0.00 0.00 0.00 4.01
93 94 3.516700 TCTCTGAATCTGTCCATGCAAGA 59.483 43.478 0.00 0.00 0.00 3.02
94 95 3.603532 TCTGAATCTGTCCATGCAAGAC 58.396 45.455 12.16 12.16 34.72 3.01
95 96 3.262660 TCTGAATCTGTCCATGCAAGACT 59.737 43.478 18.01 0.00 35.21 3.24
96 97 3.340928 TGAATCTGTCCATGCAAGACTG 58.659 45.455 18.01 17.15 35.21 3.51
105 106 4.436448 GCAAGACTGCGAGCGTGC 62.436 66.667 0.00 0.00 39.20 5.34
106 107 3.037833 CAAGACTGCGAGCGTGCA 61.038 61.111 5.78 5.78 43.95 4.57
107 108 2.280119 AAGACTGCGAGCGTGCAA 60.280 55.556 7.32 0.00 45.74 4.08
108 109 2.598632 AAGACTGCGAGCGTGCAAC 61.599 57.895 7.32 5.04 45.74 4.17
109 110 3.337889 GACTGCGAGCGTGCAACA 61.338 61.111 7.32 0.00 45.74 3.33
110 111 3.564342 GACTGCGAGCGTGCAACAC 62.564 63.158 7.32 0.00 45.74 3.32
111 112 4.374702 CTGCGAGCGTGCAACACC 62.375 66.667 7.32 0.00 45.74 4.16
132 133 4.265904 CCCCCACCTTTTCATAACAAAC 57.734 45.455 0.00 0.00 0.00 2.93
133 134 3.007506 CCCCCACCTTTTCATAACAAACC 59.992 47.826 0.00 0.00 0.00 3.27
134 135 3.643792 CCCCACCTTTTCATAACAAACCA 59.356 43.478 0.00 0.00 0.00 3.67
135 136 4.101741 CCCCACCTTTTCATAACAAACCAA 59.898 41.667 0.00 0.00 0.00 3.67
136 137 5.221823 CCCCACCTTTTCATAACAAACCAAT 60.222 40.000 0.00 0.00 0.00 3.16
137 138 6.014156 CCCCACCTTTTCATAACAAACCAATA 60.014 38.462 0.00 0.00 0.00 1.90
138 139 7.310983 CCCCACCTTTTCATAACAAACCAATAT 60.311 37.037 0.00 0.00 0.00 1.28
139 140 8.100164 CCCACCTTTTCATAACAAACCAATATT 58.900 33.333 0.00 0.00 0.00 1.28
140 141 9.500785 CCACCTTTTCATAACAAACCAATATTT 57.499 29.630 0.00 0.00 0.00 1.40
153 154 9.705290 ACAAACCAATATTTCATTAAAGTCACC 57.295 29.630 0.00 0.00 0.00 4.02
154 155 8.859156 CAAACCAATATTTCATTAAAGTCACCG 58.141 33.333 0.00 0.00 0.00 4.94
155 156 7.931578 ACCAATATTTCATTAAAGTCACCGA 57.068 32.000 0.00 0.00 0.00 4.69
156 157 7.985476 ACCAATATTTCATTAAAGTCACCGAG 58.015 34.615 0.00 0.00 0.00 4.63
157 158 7.067008 ACCAATATTTCATTAAAGTCACCGAGG 59.933 37.037 0.00 0.00 0.00 4.63
158 159 4.965119 ATTTCATTAAAGTCACCGAGGC 57.035 40.909 0.00 0.00 0.00 4.70
159 160 3.410631 TTCATTAAAGTCACCGAGGCA 57.589 42.857 0.00 0.00 0.00 4.75
160 161 2.695359 TCATTAAAGTCACCGAGGCAC 58.305 47.619 0.00 0.00 0.00 5.01
161 162 2.037902 TCATTAAAGTCACCGAGGCACA 59.962 45.455 0.00 0.00 0.00 4.57
162 163 2.163818 TTAAAGTCACCGAGGCACAG 57.836 50.000 0.00 0.00 0.00 3.66
163 164 0.320421 TAAAGTCACCGAGGCACAGC 60.320 55.000 0.00 0.00 0.00 4.40
174 175 3.050275 GCACAGCCAAGGTCGTCC 61.050 66.667 0.00 0.00 0.00 4.79
175 176 2.738521 CACAGCCAAGGTCGTCCG 60.739 66.667 0.00 0.00 39.05 4.79
176 177 4.003788 ACAGCCAAGGTCGTCCGG 62.004 66.667 0.00 0.00 39.05 5.14
179 180 4.699522 GCCAAGGTCGTCCGGCTT 62.700 66.667 9.69 0.00 37.30 4.35
180 181 2.742372 CCAAGGTCGTCCGGCTTG 60.742 66.667 10.76 10.76 39.05 4.01
181 182 2.742372 CAAGGTCGTCCGGCTTGG 60.742 66.667 10.05 0.00 39.05 3.61
182 183 3.239253 AAGGTCGTCCGGCTTGGT 61.239 61.111 0.00 0.00 39.52 3.67
183 184 3.530910 AAGGTCGTCCGGCTTGGTG 62.531 63.158 0.00 0.00 39.52 4.17
184 185 4.309950 GGTCGTCCGGCTTGGTGT 62.310 66.667 0.00 0.00 39.52 4.16
185 186 2.280592 GTCGTCCGGCTTGGTGTT 60.281 61.111 0.00 0.00 39.52 3.32
186 187 2.280524 TCGTCCGGCTTGGTGTTG 60.281 61.111 0.00 0.00 39.52 3.33
187 188 4.025401 CGTCCGGCTTGGTGTTGC 62.025 66.667 0.00 0.00 39.52 4.17
188 189 2.594592 GTCCGGCTTGGTGTTGCT 60.595 61.111 0.00 0.00 39.52 3.91
189 190 2.594303 TCCGGCTTGGTGTTGCTG 60.594 61.111 0.00 0.00 39.52 4.41
190 191 2.594303 CCGGCTTGGTGTTGCTGA 60.594 61.111 0.00 0.00 37.75 4.26
191 192 2.639286 CGGCTTGGTGTTGCTGAC 59.361 61.111 0.00 0.00 37.75 3.51
192 193 2.908073 CGGCTTGGTGTTGCTGACC 61.908 63.158 0.00 0.00 37.75 4.02
193 194 2.564721 GGCTTGGTGTTGCTGACCC 61.565 63.158 0.00 0.00 31.84 4.46
194 195 1.827789 GCTTGGTGTTGCTGACCCA 60.828 57.895 0.00 0.00 31.84 4.51
195 196 1.799258 GCTTGGTGTTGCTGACCCAG 61.799 60.000 0.00 0.00 32.49 4.45
196 197 0.179020 CTTGGTGTTGCTGACCCAGA 60.179 55.000 0.00 0.00 32.44 3.86
197 198 0.257328 TTGGTGTTGCTGACCCAGAA 59.743 50.000 0.00 0.00 32.44 3.02
198 199 0.179020 TGGTGTTGCTGACCCAGAAG 60.179 55.000 0.00 0.00 32.44 2.85
199 200 1.518903 GGTGTTGCTGACCCAGAAGC 61.519 60.000 0.00 0.00 39.96 3.86
200 201 1.228245 TGTTGCTGACCCAGAAGCC 60.228 57.895 0.00 0.00 38.71 4.35
201 202 1.073897 GTTGCTGACCCAGAAGCCT 59.926 57.895 0.00 0.00 38.71 4.58
202 203 0.957888 GTTGCTGACCCAGAAGCCTC 60.958 60.000 0.00 0.00 38.71 4.70
203 204 1.418097 TTGCTGACCCAGAAGCCTCA 61.418 55.000 0.00 0.00 38.71 3.86
204 205 1.376553 GCTGACCCAGAAGCCTCAC 60.377 63.158 0.00 0.00 32.44 3.51
205 206 1.835927 GCTGACCCAGAAGCCTCACT 61.836 60.000 0.00 0.00 32.44 3.41
206 207 0.036577 CTGACCCAGAAGCCTCACTG 60.037 60.000 0.00 0.00 32.44 3.66
207 208 0.471780 TGACCCAGAAGCCTCACTGA 60.472 55.000 0.00 0.00 36.38 3.41
208 209 0.687354 GACCCAGAAGCCTCACTGAA 59.313 55.000 0.00 0.00 36.38 3.02
209 210 0.398318 ACCCAGAAGCCTCACTGAAC 59.602 55.000 0.00 0.00 36.38 3.18
210 211 0.397941 CCCAGAAGCCTCACTGAACA 59.602 55.000 0.00 0.00 36.38 3.18
211 212 1.202806 CCCAGAAGCCTCACTGAACAA 60.203 52.381 0.00 0.00 36.38 2.83
212 213 2.575532 CCAGAAGCCTCACTGAACAAA 58.424 47.619 0.00 0.00 36.38 2.83
213 214 2.551459 CCAGAAGCCTCACTGAACAAAG 59.449 50.000 0.00 0.00 36.38 2.77
214 215 2.031333 CAGAAGCCTCACTGAACAAAGC 60.031 50.000 0.00 0.00 36.38 3.51
215 216 1.949525 GAAGCCTCACTGAACAAAGCA 59.050 47.619 0.00 0.00 0.00 3.91
216 217 2.283145 AGCCTCACTGAACAAAGCAT 57.717 45.000 0.00 0.00 0.00 3.79
217 218 2.590821 AGCCTCACTGAACAAAGCATT 58.409 42.857 0.00 0.00 0.00 3.56
218 219 2.295349 AGCCTCACTGAACAAAGCATTG 59.705 45.455 0.00 0.00 42.46 2.82
219 220 2.608752 GCCTCACTGAACAAAGCATTGG 60.609 50.000 6.62 0.00 41.01 3.16
220 221 2.624838 CCTCACTGAACAAAGCATTGGT 59.375 45.455 6.62 0.00 39.82 3.67
221 222 3.068590 CCTCACTGAACAAAGCATTGGTT 59.931 43.478 6.62 0.00 36.33 3.67
222 223 4.293415 CTCACTGAACAAAGCATTGGTTC 58.707 43.478 6.62 7.71 36.33 3.62
223 224 3.698539 TCACTGAACAAAGCATTGGTTCA 59.301 39.130 11.05 11.05 36.33 3.18
224 225 4.159321 TCACTGAACAAAGCATTGGTTCAA 59.841 37.500 12.29 0.00 36.33 2.69
225 226 4.869297 CACTGAACAAAGCATTGGTTCAAA 59.131 37.500 12.29 0.00 36.33 2.69
226 227 5.005971 CACTGAACAAAGCATTGGTTCAAAG 59.994 40.000 12.29 5.93 36.33 2.77
227 228 5.105392 ACTGAACAAAGCATTGGTTCAAAGA 60.105 36.000 12.29 0.00 36.33 2.52
228 229 5.350633 TGAACAAAGCATTGGTTCAAAGAG 58.649 37.500 9.49 0.00 36.33 2.85
229 230 3.721035 ACAAAGCATTGGTTCAAAGAGC 58.279 40.909 6.62 0.00 41.01 4.09
230 231 3.385755 ACAAAGCATTGGTTCAAAGAGCT 59.614 39.130 6.62 0.00 41.01 4.09
231 232 4.141869 ACAAAGCATTGGTTCAAAGAGCTT 60.142 37.500 6.62 10.36 39.64 3.74
232 233 4.677673 AAGCATTGGTTCAAAGAGCTTT 57.322 36.364 0.00 0.00 37.01 3.51
233 234 4.248691 AGCATTGGTTCAAAGAGCTTTC 57.751 40.909 0.00 0.00 30.25 2.62
234 235 3.638160 AGCATTGGTTCAAAGAGCTTTCA 59.362 39.130 0.00 0.00 30.25 2.69
235 236 3.737774 GCATTGGTTCAAAGAGCTTTCAC 59.262 43.478 0.00 0.00 0.00 3.18
236 237 4.737352 GCATTGGTTCAAAGAGCTTTCACA 60.737 41.667 0.00 0.00 0.00 3.58
237 238 5.535333 CATTGGTTCAAAGAGCTTTCACAT 58.465 37.500 0.00 0.00 0.00 3.21
238 239 5.596836 TTGGTTCAAAGAGCTTTCACATT 57.403 34.783 0.00 0.00 0.00 2.71
239 240 5.596836 TGGTTCAAAGAGCTTTCACATTT 57.403 34.783 0.00 0.00 0.00 2.32
240 241 5.976458 TGGTTCAAAGAGCTTTCACATTTT 58.024 33.333 0.00 0.00 0.00 1.82
241 242 6.405538 TGGTTCAAAGAGCTTTCACATTTTT 58.594 32.000 0.00 0.00 0.00 1.94
274 275 2.997485 AAAGAGCTTTCACATTCGGC 57.003 45.000 0.00 0.00 0.00 5.54
300 302 2.323999 TCCCCACAAATGCAAATCCT 57.676 45.000 0.00 0.00 0.00 3.24
310 312 7.308710 CCACAAATGCAAATCCTTTTTATTGCT 60.309 33.333 10.25 0.00 46.27 3.91
451 454 4.433431 CGCGGCGGTAAAACACGG 62.433 66.667 15.84 0.00 0.00 4.94
507 513 3.866582 CCCCATGCCCGTCCTCTC 61.867 72.222 0.00 0.00 0.00 3.20
517 530 1.154263 CGTCCTCTCGACCAACGAC 60.154 63.158 0.00 0.00 46.45 4.34
548 561 1.484653 CCCATAGACCATGTCCACGAA 59.515 52.381 0.00 0.00 32.18 3.85
550 563 2.193447 CATAGACCATGTCCACGAACG 58.807 52.381 0.00 0.00 32.18 3.95
645 658 1.001815 ACTCAAATTTTCACCGCACGG 60.002 47.619 7.71 7.71 42.03 4.94
729 743 3.341629 CCCCACCCAGCCACTGAT 61.342 66.667 0.00 0.00 32.44 2.90
753 767 3.845259 GCCCGCCAGGATACGTGA 61.845 66.667 0.00 0.00 46.39 4.35
767 781 2.108157 GTGACCCACGTGCAGTCA 59.892 61.111 26.44 26.44 38.17 3.41
836 850 0.730840 GGTTCGGCTTCAAATACCCG 59.269 55.000 0.00 0.00 41.97 5.28
871 895 1.600638 CGGTTCCTTCCCTGGTACC 59.399 63.158 4.43 4.43 42.08 3.34
884 908 0.920438 TGGTACCCACAACACCACTT 59.080 50.000 10.07 0.00 37.42 3.16
956 997 1.966451 GTTCGAAGCACCAGGGTGG 60.966 63.158 19.41 2.33 45.49 4.61
957 998 3.190738 TTCGAAGCACCAGGGTGGG 62.191 63.158 19.41 0.00 43.37 4.61
958 999 3.953775 CGAAGCACCAGGGTGGGT 61.954 66.667 19.41 4.00 43.37 4.51
959 1000 2.589157 CGAAGCACCAGGGTGGGTA 61.589 63.158 19.41 0.00 43.37 3.69
960 1001 1.299976 GAAGCACCAGGGTGGGTAG 59.700 63.158 19.41 0.00 43.37 3.18
961 1002 2.198304 GAAGCACCAGGGTGGGTAGG 62.198 65.000 19.41 0.00 43.37 3.18
962 1003 3.728373 GCACCAGGGTGGGTAGGG 61.728 72.222 19.41 0.00 43.37 3.53
963 1004 2.204090 CACCAGGGTGGGTAGGGT 60.204 66.667 10.67 0.00 43.37 4.34
964 1005 1.850755 CACCAGGGTGGGTAGGGTT 60.851 63.158 10.67 0.00 43.37 4.11
965 1006 1.540617 ACCAGGGTGGGTAGGGTTC 60.541 63.158 0.00 0.00 43.37 3.62
966 1007 2.306384 CCAGGGTGGGTAGGGTTCC 61.306 68.421 0.00 0.00 32.67 3.62
967 1008 1.229853 CAGGGTGGGTAGGGTTCCT 60.230 63.158 0.00 0.00 37.71 3.36
968 1009 1.082392 AGGGTGGGTAGGGTTCCTC 59.918 63.158 0.00 0.00 34.61 3.71
969 1010 1.082392 GGGTGGGTAGGGTTCCTCT 59.918 63.158 0.00 0.00 34.61 3.69
970 1011 0.981801 GGGTGGGTAGGGTTCCTCTC 60.982 65.000 0.00 0.00 34.61 3.20
971 1012 1.328430 GGTGGGTAGGGTTCCTCTCG 61.328 65.000 0.00 0.00 34.61 4.04
972 1013 0.324091 GTGGGTAGGGTTCCTCTCGA 60.324 60.000 0.00 0.00 34.61 4.04
973 1014 0.033405 TGGGTAGGGTTCCTCTCGAG 60.033 60.000 5.93 5.93 34.61 4.04
986 1027 0.252558 TCTCGAGGGGCTAGGGTTTT 60.253 55.000 13.56 0.00 0.00 2.43
1095 1156 4.154347 CAGGGGCTCGAGGACAGC 62.154 72.222 15.58 0.00 36.02 4.40
1239 1431 2.145536 CCGTTTTACAGTTTAGCCCGT 58.854 47.619 0.00 0.00 0.00 5.28
1256 1451 1.665735 CCGTGGTTTAATGTGCTGTGC 60.666 52.381 0.00 0.00 0.00 4.57
1260 1455 2.295909 TGGTTTAATGTGCTGTGCTTCC 59.704 45.455 0.00 0.00 0.00 3.46
1276 1471 1.480137 CTTCCTGCAGACGAGAAGGAT 59.520 52.381 17.39 0.00 38.59 3.24
1288 1483 2.739932 CGAGAAGGATGAAATGGCGAGT 60.740 50.000 0.00 0.00 0.00 4.18
1318 1513 2.767505 GTCAAGTTCCAGTCCGTCATT 58.232 47.619 0.00 0.00 0.00 2.57
1342 1537 2.970639 GTGGAGAGCCTGCACGTA 59.029 61.111 10.18 0.00 42.32 3.57
1352 1547 1.581934 CCTGCACGTACATGGTATGG 58.418 55.000 0.00 0.00 33.60 2.74
1354 1549 2.224281 CCTGCACGTACATGGTATGGAT 60.224 50.000 0.00 0.00 33.60 3.41
1363 1558 1.070601 CATGGTATGGATGACCGCTCA 59.929 52.381 0.00 0.00 40.09 4.26
1367 1562 1.391933 TATGGATGACCGCTCACGCT 61.392 55.000 0.00 0.00 39.42 5.07
1369 1564 2.951745 GATGACCGCTCACGCTCG 60.952 66.667 0.00 0.00 38.22 5.03
1416 1615 0.096454 GTTTGGACGAGGCGTAATGC 59.904 55.000 0.00 0.00 41.37 3.56
1469 1680 2.270205 CTGCGGGGTCTGCTGATT 59.730 61.111 0.00 0.00 33.64 2.57
1474 1685 1.747206 GCGGGGTCTGCTGATTACAAT 60.747 52.381 0.00 0.00 0.00 2.71
1475 1686 2.643551 CGGGGTCTGCTGATTACAATT 58.356 47.619 0.00 0.00 0.00 2.32
1476 1687 3.016736 CGGGGTCTGCTGATTACAATTT 58.983 45.455 0.00 0.00 0.00 1.82
1477 1688 4.196193 CGGGGTCTGCTGATTACAATTTA 58.804 43.478 0.00 0.00 0.00 1.40
1479 1690 5.193679 GGGGTCTGCTGATTACAATTTAGT 58.806 41.667 0.00 0.00 0.00 2.24
1485 1696 6.430925 TCTGCTGATTACAATTTAGTTGCTGT 59.569 34.615 0.00 0.00 41.69 4.40
1499 1710 0.107993 TGCTGTATCTGTGCTGCTCC 60.108 55.000 0.00 0.00 36.22 4.70
1520 1732 1.946283 GCTACTCTGTGTTTGCTCCCC 60.946 57.143 0.00 0.00 0.00 4.81
1527 1739 3.073798 TCTGTGTTTGCTCCCCTGATAAA 59.926 43.478 0.00 0.00 0.00 1.40
1528 1740 3.153919 TGTGTTTGCTCCCCTGATAAAC 58.846 45.455 0.00 0.00 32.44 2.01
1529 1741 3.153919 GTGTTTGCTCCCCTGATAAACA 58.846 45.455 0.00 0.00 36.20 2.83
1530 1742 3.763897 GTGTTTGCTCCCCTGATAAACAT 59.236 43.478 0.00 0.00 38.54 2.71
1531 1743 3.763360 TGTTTGCTCCCCTGATAAACATG 59.237 43.478 0.00 0.00 34.88 3.21
1532 1744 2.734755 TGCTCCCCTGATAAACATGG 57.265 50.000 0.00 0.00 34.71 3.66
1536 1748 3.624707 GCTCCCCTGATAAACATGGACAA 60.625 47.826 0.00 0.00 36.59 3.18
1551 1763 2.962421 TGGACAAGTTTTTGCCTTAGGG 59.038 45.455 0.00 0.00 37.85 3.53
1559 1771 1.173043 TTTGCCTTAGGGAACGCATG 58.827 50.000 4.26 0.00 31.45 4.06
1570 1782 2.730928 GGGAACGCATGTTTGACATTTG 59.269 45.455 0.00 0.00 36.53 2.32
1574 1786 5.164061 GGAACGCATGTTTGACATTTGAATC 60.164 40.000 0.00 0.00 36.53 2.52
1629 1885 3.034030 GCACTTTTGCTGTCGGCT 58.966 55.556 5.01 0.00 46.17 5.52
1637 1893 1.651987 TTGCTGTCGGCTAATGCTAC 58.348 50.000 5.01 0.00 42.39 3.58
1644 1907 5.179045 TGTCGGCTAATGCTACTTACTAC 57.821 43.478 0.00 0.00 39.59 2.73
1645 1908 4.641541 TGTCGGCTAATGCTACTTACTACA 59.358 41.667 0.00 0.00 39.59 2.74
1646 1909 5.125900 TGTCGGCTAATGCTACTTACTACAA 59.874 40.000 0.00 0.00 39.59 2.41
1647 1910 6.038356 GTCGGCTAATGCTACTTACTACAAA 58.962 40.000 0.00 0.00 39.59 2.83
1648 1911 6.532657 GTCGGCTAATGCTACTTACTACAAAA 59.467 38.462 0.00 0.00 39.59 2.44
1649 1912 7.224167 GTCGGCTAATGCTACTTACTACAAAAT 59.776 37.037 0.00 0.00 39.59 1.82
1650 1913 7.223971 TCGGCTAATGCTACTTACTACAAAATG 59.776 37.037 0.00 0.00 39.59 2.32
1671 1934 4.606071 ACTGATCAGTTGCGCCTC 57.394 55.556 22.89 0.00 38.83 4.70
1672 1935 1.978473 ACTGATCAGTTGCGCCTCT 59.022 52.632 22.89 0.00 38.83 3.69
1673 1936 0.108424 ACTGATCAGTTGCGCCTCTC 60.108 55.000 22.89 0.00 38.83 3.20
1686 1949 0.392729 GCCTCTCTGCTGCAGTTCAT 60.393 55.000 27.24 0.00 32.61 2.57
1689 1952 3.196463 CCTCTCTGCTGCAGTTCATAAG 58.804 50.000 27.24 16.78 32.61 1.73
1800 2063 2.084546 ACGCCTTCTCATTTAGTTGCC 58.915 47.619 0.00 0.00 0.00 4.52
1824 2087 2.241176 ACTCCTCAACAAGTTTGGGACA 59.759 45.455 0.00 0.00 0.00 4.02
1830 2093 2.757868 CAACAAGTTTGGGACACAAGGA 59.242 45.455 0.00 0.00 40.82 3.36
1933 2196 0.659427 CTGCACCATGTAAGGCATCG 59.341 55.000 0.00 0.00 35.19 3.84
1946 2209 5.934043 TGTAAGGCATCGGATCATTTATCTG 59.066 40.000 0.00 0.00 41.70 2.90
1973 2236 4.789012 TTTTCCATTGATGTCTGCCTTC 57.211 40.909 0.00 0.00 0.00 3.46
1993 2256 6.447162 CCTTCCAAATTTCAACTGACTAACC 58.553 40.000 0.00 0.00 0.00 2.85
2071 2334 6.370442 CACGGAGAACACATACCATTAGAAAA 59.630 38.462 0.00 0.00 0.00 2.29
2095 2358 1.079503 CTGCAAGGCCGAGTAGAAAC 58.920 55.000 9.39 0.00 0.00 2.78
2145 2410 9.941664 CATCTAGATGCTTTAATAACAAACAGG 57.058 33.333 19.47 0.00 31.39 4.00
2183 2448 4.825422 TGTTTGGTGCTTGAAACATGAAA 58.175 34.783 0.00 0.00 37.19 2.69
2184 2449 4.629200 TGTTTGGTGCTTGAAACATGAAAC 59.371 37.500 0.00 0.00 37.19 2.78
2185 2450 3.451141 TGGTGCTTGAAACATGAAACC 57.549 42.857 0.00 0.00 0.00 3.27
2186 2451 3.030291 TGGTGCTTGAAACATGAAACCT 58.970 40.909 0.00 0.00 0.00 3.50
2187 2452 4.211125 TGGTGCTTGAAACATGAAACCTA 58.789 39.130 0.00 0.00 0.00 3.08
2188 2453 4.832266 TGGTGCTTGAAACATGAAACCTAT 59.168 37.500 0.00 0.00 0.00 2.57
2221 2486 7.252708 TGCAGTTGATATTGACTAAATTGCTG 58.747 34.615 0.00 0.00 0.00 4.41
2229 2494 8.737168 ATATTGACTAAATTGCTGCACTTAGA 57.263 30.769 25.85 12.27 0.00 2.10
2241 2528 6.406370 TGCTGCACTTAGACATATTTACTGT 58.594 36.000 0.00 0.00 0.00 3.55
2279 2566 6.022315 TCTTTGATGATTTATGGTGGGGTTT 58.978 36.000 0.00 0.00 0.00 3.27
2280 2567 7.185565 TCTTTGATGATTTATGGTGGGGTTTA 58.814 34.615 0.00 0.00 0.00 2.01
2358 2645 1.899142 AGCGGTATTTGGGCATGTTTT 59.101 42.857 0.00 0.00 0.00 2.43
2367 2654 7.659799 GGTATTTGGGCATGTTTTCTTAAACTT 59.340 33.333 0.00 0.00 43.25 2.66
2373 2660 7.172361 TGGGCATGTTTTCTTAAACTTAATTGC 59.828 33.333 0.00 0.00 43.25 3.56
2425 2712 8.415192 CAATTTTAGTGTAATTGCATGATGCT 57.585 30.769 19.19 0.51 45.31 3.79
2430 2717 6.764308 AGTGTAATTGCATGATGCTTACTT 57.236 33.333 22.08 12.65 45.31 2.24
2463 2750 1.680338 AAGACAAGTGGCAGGTTCAC 58.320 50.000 0.00 0.00 35.51 3.18
2483 2770 7.148086 GGTTCACACTTCATTGGCTATTCATTA 60.148 37.037 0.00 0.00 0.00 1.90
2488 2775 8.052748 ACACTTCATTGGCTATTCATTACCTAA 58.947 33.333 0.00 0.00 0.00 2.69
2546 2833 1.762957 AGCAGTCAGTGTGGTTACTGT 59.237 47.619 9.81 0.00 46.32 3.55
2547 2834 2.170607 AGCAGTCAGTGTGGTTACTGTT 59.829 45.455 9.81 2.48 46.32 3.16
2548 2835 2.544267 GCAGTCAGTGTGGTTACTGTTC 59.456 50.000 9.81 2.09 46.32 3.18
2549 2836 3.131396 CAGTCAGTGTGGTTACTGTTCC 58.869 50.000 5.89 0.00 46.32 3.62
2555 2842 5.071250 TCAGTGTGGTTACTGTTCCAACTAT 59.929 40.000 5.89 0.00 46.32 2.12
2556 2843 5.408604 CAGTGTGGTTACTGTTCCAACTATC 59.591 44.000 6.09 0.00 42.38 2.08
2566 2853 5.531287 ACTGTTCCAACTATCACAAACCTTC 59.469 40.000 0.00 0.00 0.00 3.46
2595 2882 5.283294 TGCACTTGTTGATCTTTTGTGATG 58.717 37.500 0.00 0.00 0.00 3.07
2609 2896 0.110486 GTGATGGAGGTGGTGGTTGT 59.890 55.000 0.00 0.00 0.00 3.32
2611 2898 2.058705 TGATGGAGGTGGTGGTTGTAA 58.941 47.619 0.00 0.00 0.00 2.41
2649 2937 6.369059 GCATTCTGCTATATTTCACACAGT 57.631 37.500 0.00 0.00 40.96 3.55
2650 2938 6.197276 GCATTCTGCTATATTTCACACAGTG 58.803 40.000 0.00 0.00 40.96 3.66
2652 2940 7.628235 CATTCTGCTATATTTCACACAGTGAG 58.372 38.462 7.81 0.00 43.69 3.51
2653 2941 5.111989 TCTGCTATATTTCACACAGTGAGC 58.888 41.667 7.81 3.55 43.69 4.26
2654 2942 4.191544 TGCTATATTTCACACAGTGAGCC 58.808 43.478 7.81 0.00 43.69 4.70
2655 2943 4.080919 TGCTATATTTCACACAGTGAGCCT 60.081 41.667 7.81 0.00 43.69 4.58
2656 2944 4.878397 GCTATATTTCACACAGTGAGCCTT 59.122 41.667 7.81 0.00 43.69 4.35
2657 2945 5.355350 GCTATATTTCACACAGTGAGCCTTT 59.645 40.000 7.81 0.00 43.69 3.11
2694 2982 7.172342 TGTTACCATCAGTAGTAATTGCCTTT 58.828 34.615 0.00 0.00 31.54 3.11
2697 2985 7.625828 ACCATCAGTAGTAATTGCCTTTAAC 57.374 36.000 0.00 0.00 0.00 2.01
2758 3047 5.537188 TGTTTGGCCATCTTCATTTTGTAC 58.463 37.500 6.09 0.00 0.00 2.90
2775 3064 8.665685 CATTTTGTACTCTGTTATACCAAGACC 58.334 37.037 0.00 0.00 0.00 3.85
2813 3102 3.998913 TGCCTCTGGTCACATGAATAA 57.001 42.857 0.00 0.00 0.00 1.40
2815 3104 4.454678 TGCCTCTGGTCACATGAATAATC 58.545 43.478 0.00 0.00 0.00 1.75
2820 3109 6.482641 CCTCTGGTCACATGAATAATCTCTTG 59.517 42.308 0.00 0.00 0.00 3.02
2827 3116 7.335422 GTCACATGAATAATCTCTTGGTTCTGT 59.665 37.037 0.00 0.00 0.00 3.41
2843 3140 9.469807 CTTGGTTCTGTTATAGCTGTATCTAAG 57.530 37.037 0.00 0.00 0.00 2.18
2862 3159 8.709386 ATCTAAGTGCAAGTAGTCTATGTTTG 57.291 34.615 0.00 0.00 0.00 2.93
2890 3187 2.667473 AATTGAATCTGCTTGCTGGC 57.333 45.000 0.00 0.00 0.00 4.85
2892 3191 1.252904 TTGAATCTGCTTGCTGGCCC 61.253 55.000 0.00 0.00 0.00 5.80
2944 3243 3.405823 AAATGGGTGTTTGGCAAGATG 57.594 42.857 0.00 0.00 0.00 2.90
2952 3251 3.798337 GTGTTTGGCAAGATGAGTTTGTG 59.202 43.478 0.00 0.00 0.00 3.33
2994 3293 7.451255 TGTTATCCCAAGATCAGTTTGTGATTT 59.549 33.333 0.00 0.00 46.64 2.17
3189 3494 5.859648 TCGAAAACCTTGTTTTGAACAGAAC 59.140 36.000 9.47 2.03 43.27 3.01
3277 3582 4.906065 AATGAATGTGAATGACGATGGG 57.094 40.909 0.00 0.00 0.00 4.00
3299 3604 3.620966 GCATCATATCCTCTGTAAGGGCC 60.621 52.174 0.00 0.00 46.23 5.80
3310 3615 1.686052 TGTAAGGGCCTTGTTGCTTTG 59.314 47.619 28.88 0.00 0.00 2.77
3329 3635 3.502191 TGTTGCTCTTTTGTTGGTGTC 57.498 42.857 0.00 0.00 0.00 3.67
3330 3636 2.165437 TGTTGCTCTTTTGTTGGTGTCC 59.835 45.455 0.00 0.00 0.00 4.02
3482 3790 6.869206 TTTAAAGACTGGCAGGTACTATCT 57.131 37.500 20.34 8.35 36.02 1.98
3483 3791 6.466885 TTAAAGACTGGCAGGTACTATCTC 57.533 41.667 20.34 4.37 36.02 2.75
3489 3797 2.965831 TGGCAGGTACTATCTCCATCAC 59.034 50.000 0.00 0.00 36.02 3.06
3493 3801 4.342378 GCAGGTACTATCTCCATCACTGAA 59.658 45.833 0.00 0.00 36.02 3.02
3509 3817 5.856156 TCACTGAATGCCATTTTCACAATT 58.144 33.333 0.00 0.00 0.00 2.32
3512 3820 7.930325 TCACTGAATGCCATTTTCACAATTAAA 59.070 29.630 0.00 0.00 0.00 1.52
3556 3864 4.993705 TCATCTTTTAGGGAGGTTGTGT 57.006 40.909 0.00 0.00 0.00 3.72
3563 3871 8.388656 TCTTTTAGGGAGGTTGTGTAAGATAT 57.611 34.615 0.00 0.00 0.00 1.63
3568 3876 5.103940 AGGGAGGTTGTGTAAGATATTGCAT 60.104 40.000 0.00 0.00 0.00 3.96
3575 3883 9.369904 GGTTGTGTAAGATATTGCATTTTTCAT 57.630 29.630 0.00 0.00 0.00 2.57
3611 3944 9.498307 AAGTCTTAAAGTTTTATCAAACACACG 57.502 29.630 5.36 0.00 44.32 4.49
3612 3945 8.126700 AGTCTTAAAGTTTTATCAAACACACGG 58.873 33.333 5.36 0.00 44.32 4.94
3622 3955 0.249573 AAACACACGGGACCAGTACG 60.250 55.000 0.00 0.00 0.00 3.67
3623 3956 1.394266 AACACACGGGACCAGTACGT 61.394 55.000 0.00 0.00 42.17 3.57
3624 3957 0.537143 ACACACGGGACCAGTACGTA 60.537 55.000 0.00 0.00 39.02 3.57
3626 3959 0.883833 ACACGGGACCAGTACGTAAG 59.116 55.000 0.00 0.00 39.02 2.34
3629 3962 1.167851 CGGGACCAGTACGTAAGACA 58.832 55.000 0.00 0.00 43.62 3.41
3632 3965 3.367703 CGGGACCAGTACGTAAGACAAAT 60.368 47.826 0.00 0.00 43.62 2.32
3633 3966 3.930848 GGGACCAGTACGTAAGACAAATG 59.069 47.826 0.00 0.00 43.62 2.32
3634 3967 4.562143 GGGACCAGTACGTAAGACAAATGT 60.562 45.833 0.00 0.00 43.62 2.71
3635 3968 4.387862 GGACCAGTACGTAAGACAAATGTG 59.612 45.833 0.00 0.00 43.62 3.21
3636 3969 4.952460 ACCAGTACGTAAGACAAATGTGT 58.048 39.130 0.00 0.00 42.10 3.72
3637 3970 4.748102 ACCAGTACGTAAGACAAATGTGTG 59.252 41.667 0.00 0.00 38.41 3.82
3641 3975 2.548057 ACGTAAGACAAATGTGTGGCAG 59.452 45.455 0.00 0.00 38.41 4.85
3662 3996 4.802039 CAGCATGGTGTGAATTAAATGCTC 59.198 41.667 16.80 0.00 45.64 4.26
3693 4027 6.772360 TTTATGGAAGCTGTGCAATAATCA 57.228 33.333 0.00 0.00 0.00 2.57
3694 4028 6.964807 TTATGGAAGCTGTGCAATAATCAT 57.035 33.333 0.00 0.00 0.00 2.45
3695 4029 8.462589 TTTATGGAAGCTGTGCAATAATCATA 57.537 30.769 0.00 0.00 0.00 2.15
3696 4030 5.756195 TGGAAGCTGTGCAATAATCATAC 57.244 39.130 0.00 0.00 0.00 2.39
3697 4031 5.192176 TGGAAGCTGTGCAATAATCATACA 58.808 37.500 0.00 0.00 0.00 2.29
3698 4032 5.297527 TGGAAGCTGTGCAATAATCATACAG 59.702 40.000 0.00 0.00 41.15 2.74
3699 4033 5.297776 GGAAGCTGTGCAATAATCATACAGT 59.702 40.000 0.00 0.00 40.52 3.55
3700 4034 6.183360 GGAAGCTGTGCAATAATCATACAGTT 60.183 38.462 0.00 0.00 40.52 3.16
3701 4035 6.764308 AGCTGTGCAATAATCATACAGTTT 57.236 33.333 0.00 0.00 40.52 2.66
3702 4036 7.161773 AGCTGTGCAATAATCATACAGTTTT 57.838 32.000 0.00 0.00 40.52 2.43
3703 4037 7.253422 AGCTGTGCAATAATCATACAGTTTTC 58.747 34.615 0.00 0.00 40.52 2.29
3704 4038 7.028962 GCTGTGCAATAATCATACAGTTTTCA 58.971 34.615 0.00 0.00 40.52 2.69
3705 4039 7.008628 GCTGTGCAATAATCATACAGTTTTCAC 59.991 37.037 0.00 0.00 40.52 3.18
3706 4040 7.312154 TGTGCAATAATCATACAGTTTTCACC 58.688 34.615 0.00 0.00 0.00 4.02
3707 4041 7.040132 TGTGCAATAATCATACAGTTTTCACCA 60.040 33.333 0.00 0.00 0.00 4.17
3732 4066 4.555348 TCACACAAACCAAACGTATTCC 57.445 40.909 0.00 0.00 0.00 3.01
3777 4128 2.878117 GCTAACCCATGTACTTGCCACA 60.878 50.000 3.24 0.00 0.00 4.17
3784 4135 0.249699 TGTACTTGCCACACACTCCG 60.250 55.000 0.00 0.00 0.00 4.63
3813 4164 7.801547 AATCAATCTGTTTTACATTTGCTCG 57.198 32.000 0.00 0.00 0.00 5.03
3836 4187 1.471676 GCTCATGAAAGGGATCGTCGT 60.472 52.381 0.00 0.00 0.00 4.34
3857 4208 0.106967 GAGGGGGAAGAACTGATGGC 60.107 60.000 0.00 0.00 0.00 4.40
3984 4335 3.068881 CCTGGAGGCAACGAGGAA 58.931 61.111 6.87 0.00 46.39 3.36
3988 4339 2.747686 GAGGCAACGAGGAACCCA 59.252 61.111 0.00 0.00 46.39 4.51
3989 4340 1.299976 GAGGCAACGAGGAACCCAT 59.700 57.895 0.00 0.00 46.39 4.00
4126 4513 1.831106 AGACGACAGCCATGGACAATA 59.169 47.619 18.40 0.00 0.00 1.90
4281 4668 1.524008 CGTCTTGGGGTTCCTTTGGC 61.524 60.000 0.00 0.00 0.00 4.52
4362 4749 3.177997 GCTCTAGCTTTTGAGAGGAGG 57.822 52.381 12.16 0.00 39.74 4.30
4363 4750 2.763448 GCTCTAGCTTTTGAGAGGAGGA 59.237 50.000 12.16 0.00 39.74 3.71
4459 4853 4.154737 TGATCAGTGTTATGAGTTTGCAGC 59.845 41.667 0.00 0.00 31.44 5.25
4508 4911 3.777522 AGTTATCTTGAGCTACCTGGCTT 59.222 43.478 0.00 0.00 43.20 4.35
4515 4921 5.366768 TCTTGAGCTACCTGGCTTGTTATAT 59.633 40.000 0.00 0.00 43.20 0.86
4520 4926 5.308237 AGCTACCTGGCTTGTTATATAGCTT 59.692 40.000 0.00 0.00 40.88 3.74
4543 4949 1.900245 TGCTTTCAGCTGCTTGATCA 58.100 45.000 9.47 0.00 42.97 2.92
4544 4950 2.443416 TGCTTTCAGCTGCTTGATCAT 58.557 42.857 9.47 0.00 42.97 2.45
4546 4952 3.376234 TGCTTTCAGCTGCTTGATCATAC 59.624 43.478 9.47 0.00 42.97 2.39
4547 4953 3.626670 GCTTTCAGCTGCTTGATCATACT 59.373 43.478 9.47 0.00 38.45 2.12
4548 4954 4.813161 GCTTTCAGCTGCTTGATCATACTA 59.187 41.667 9.47 0.00 38.45 1.82
4552 5102 5.545588 TCAGCTGCTTGATCATACTAATCC 58.454 41.667 9.47 0.00 0.00 3.01
4603 5154 7.222000 AGATATACTTGTACTAGAGCAAGCC 57.778 40.000 21.77 11.66 44.12 4.35
4628 5179 5.106712 GCAATTATCACTCGTCTGGACAAAA 60.107 40.000 1.63 0.00 0.00 2.44
4711 5265 2.029964 GTTCGGGTGAGGCGAACA 59.970 61.111 3.17 0.00 40.88 3.18
4771 5325 6.030228 GGGTTGTCGATTCTTTTGATTCATC 58.970 40.000 0.00 0.00 0.00 2.92
4792 5646 8.475331 TCATCCATTAAGTCTTCTTAAACGAC 57.525 34.615 4.86 0.00 45.40 4.34
4873 5727 9.537192 TTGTATCCAAACCGAATGTAATAGTAG 57.463 33.333 0.00 0.00 0.00 2.57
4874 5728 7.654520 TGTATCCAAACCGAATGTAATAGTAGC 59.345 37.037 0.00 0.00 0.00 3.58
4875 5729 6.229936 TCCAAACCGAATGTAATAGTAGCT 57.770 37.500 0.00 0.00 0.00 3.32
4876 5730 6.278363 TCCAAACCGAATGTAATAGTAGCTC 58.722 40.000 0.00 0.00 0.00 4.09
4892 5746 8.798859 ATAGTAGCTCTGTTCATTGTCAAAAT 57.201 30.769 0.00 0.00 0.00 1.82
4911 5765 8.836413 GTCAAAATTTAAAGGAAAAAGGAAGGG 58.164 33.333 0.00 0.00 0.00 3.95
4932 5786 9.817809 GAAGGGGGTGAAAGATAATAAAATTTC 57.182 33.333 0.00 0.00 33.31 2.17
4952 5808 8.747538 AATTTCGGCTTACTCTAAATACCAAT 57.252 30.769 0.00 0.00 0.00 3.16
4953 5809 9.841295 AATTTCGGCTTACTCTAAATACCAATA 57.159 29.630 0.00 0.00 0.00 1.90
5004 5860 6.366332 ACATCACACGAAAGATACTCAAGTTC 59.634 38.462 0.00 0.00 0.00 3.01
5136 5992 9.162764 CGGCAATACACTAAGCCTATAATAAAT 57.837 33.333 0.00 0.00 44.85 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.712305 AGATAAATTTACGTGGAGGAATCATAG 57.288 33.333 0.00 0.00 0.00 2.23
3 4 9.706691 GAGATAAATTTACGTGGAGGAATCATA 57.293 33.333 0.00 0.00 0.00 2.15
5 6 6.990349 GGAGATAAATTTACGTGGAGGAATCA 59.010 38.462 0.00 0.00 0.00 2.57
6 7 6.427242 GGGAGATAAATTTACGTGGAGGAATC 59.573 42.308 0.00 0.00 0.00 2.52
7 8 6.126594 TGGGAGATAAATTTACGTGGAGGAAT 60.127 38.462 0.00 0.00 0.00 3.01
9 10 4.717778 TGGGAGATAAATTTACGTGGAGGA 59.282 41.667 0.00 0.00 0.00 3.71
10 11 4.814771 GTGGGAGATAAATTTACGTGGAGG 59.185 45.833 0.00 0.00 0.00 4.30
11 12 5.424757 TGTGGGAGATAAATTTACGTGGAG 58.575 41.667 0.00 0.00 0.00 3.86
12 13 5.423704 TGTGGGAGATAAATTTACGTGGA 57.576 39.130 0.00 0.00 0.00 4.02
13 14 7.255001 GGTTATGTGGGAGATAAATTTACGTGG 60.255 40.741 0.00 0.00 0.00 4.94
14 15 7.517734 CGGTTATGTGGGAGATAAATTTACGTG 60.518 40.741 0.00 0.00 0.00 4.49
15 16 6.480981 CGGTTATGTGGGAGATAAATTTACGT 59.519 38.462 0.00 0.00 0.00 3.57
16 17 6.702723 TCGGTTATGTGGGAGATAAATTTACG 59.297 38.462 0.00 0.00 0.00 3.18
17 18 7.496591 TGTCGGTTATGTGGGAGATAAATTTAC 59.503 37.037 0.00 0.00 0.00 2.01
18 19 7.566569 TGTCGGTTATGTGGGAGATAAATTTA 58.433 34.615 0.00 0.00 0.00 1.40
19 20 6.419791 TGTCGGTTATGTGGGAGATAAATTT 58.580 36.000 0.00 0.00 0.00 1.82
20 21 5.996644 TGTCGGTTATGTGGGAGATAAATT 58.003 37.500 0.00 0.00 0.00 1.82
21 22 5.623956 TGTCGGTTATGTGGGAGATAAAT 57.376 39.130 0.00 0.00 0.00 1.40
22 23 5.129650 TGATGTCGGTTATGTGGGAGATAAA 59.870 40.000 0.00 0.00 0.00 1.40
23 24 4.651962 TGATGTCGGTTATGTGGGAGATAA 59.348 41.667 0.00 0.00 0.00 1.75
24 25 4.219919 TGATGTCGGTTATGTGGGAGATA 58.780 43.478 0.00 0.00 0.00 1.98
25 26 3.038280 TGATGTCGGTTATGTGGGAGAT 58.962 45.455 0.00 0.00 0.00 2.75
26 27 2.462723 TGATGTCGGTTATGTGGGAGA 58.537 47.619 0.00 0.00 0.00 3.71
27 28 2.979814 TGATGTCGGTTATGTGGGAG 57.020 50.000 0.00 0.00 0.00 4.30
28 29 4.219919 TCTATGATGTCGGTTATGTGGGA 58.780 43.478 0.00 0.00 0.00 4.37
29 30 4.280929 TCTCTATGATGTCGGTTATGTGGG 59.719 45.833 0.00 0.00 0.00 4.61
30 31 5.453567 TCTCTATGATGTCGGTTATGTGG 57.546 43.478 0.00 0.00 0.00 4.17
31 32 6.584184 GTGATCTCTATGATGTCGGTTATGTG 59.416 42.308 0.00 0.00 35.14 3.21
32 33 6.265422 TGTGATCTCTATGATGTCGGTTATGT 59.735 38.462 0.00 0.00 35.14 2.29
33 34 6.681777 TGTGATCTCTATGATGTCGGTTATG 58.318 40.000 0.00 0.00 35.14 1.90
34 35 6.901081 TGTGATCTCTATGATGTCGGTTAT 57.099 37.500 0.00 0.00 35.14 1.89
35 36 6.096282 TGTTGTGATCTCTATGATGTCGGTTA 59.904 38.462 0.00 0.00 35.14 2.85
36 37 5.105351 TGTTGTGATCTCTATGATGTCGGTT 60.105 40.000 0.00 0.00 35.14 4.44
37 38 4.402474 TGTTGTGATCTCTATGATGTCGGT 59.598 41.667 0.00 0.00 35.14 4.69
38 39 4.936891 TGTTGTGATCTCTATGATGTCGG 58.063 43.478 0.00 0.00 35.14 4.79
39 40 6.237942 GGTTTGTTGTGATCTCTATGATGTCG 60.238 42.308 0.00 0.00 35.14 4.35
40 41 6.595326 TGGTTTGTTGTGATCTCTATGATGTC 59.405 38.462 0.00 0.00 35.14 3.06
41 42 6.475504 TGGTTTGTTGTGATCTCTATGATGT 58.524 36.000 0.00 0.00 35.14 3.06
42 43 6.990341 TGGTTTGTTGTGATCTCTATGATG 57.010 37.500 0.00 0.00 35.14 3.07
43 44 6.092670 CGTTGGTTTGTTGTGATCTCTATGAT 59.907 38.462 0.00 0.00 38.27 2.45
44 45 5.408299 CGTTGGTTTGTTGTGATCTCTATGA 59.592 40.000 0.00 0.00 0.00 2.15
45 46 5.621422 CGTTGGTTTGTTGTGATCTCTATG 58.379 41.667 0.00 0.00 0.00 2.23
46 47 4.154195 GCGTTGGTTTGTTGTGATCTCTAT 59.846 41.667 0.00 0.00 0.00 1.98
47 48 3.496884 GCGTTGGTTTGTTGTGATCTCTA 59.503 43.478 0.00 0.00 0.00 2.43
48 49 2.290641 GCGTTGGTTTGTTGTGATCTCT 59.709 45.455 0.00 0.00 0.00 3.10
49 50 2.604614 GGCGTTGGTTTGTTGTGATCTC 60.605 50.000 0.00 0.00 0.00 2.75
50 51 1.336755 GGCGTTGGTTTGTTGTGATCT 59.663 47.619 0.00 0.00 0.00 2.75
51 52 1.336755 AGGCGTTGGTTTGTTGTGATC 59.663 47.619 0.00 0.00 0.00 2.92
52 53 1.336755 GAGGCGTTGGTTTGTTGTGAT 59.663 47.619 0.00 0.00 0.00 3.06
53 54 0.736053 GAGGCGTTGGTTTGTTGTGA 59.264 50.000 0.00 0.00 0.00 3.58
54 55 0.738389 AGAGGCGTTGGTTTGTTGTG 59.262 50.000 0.00 0.00 0.00 3.33
55 56 1.021968 GAGAGGCGTTGGTTTGTTGT 58.978 50.000 0.00 0.00 0.00 3.32
56 57 1.002468 CAGAGAGGCGTTGGTTTGTTG 60.002 52.381 0.00 0.00 0.00 3.33
57 58 1.134220 TCAGAGAGGCGTTGGTTTGTT 60.134 47.619 0.00 0.00 0.00 2.83
58 59 0.468226 TCAGAGAGGCGTTGGTTTGT 59.532 50.000 0.00 0.00 0.00 2.83
59 60 1.593196 TTCAGAGAGGCGTTGGTTTG 58.407 50.000 0.00 0.00 0.00 2.93
60 61 2.039084 AGATTCAGAGAGGCGTTGGTTT 59.961 45.455 0.00 0.00 0.00 3.27
61 62 1.625818 AGATTCAGAGAGGCGTTGGTT 59.374 47.619 0.00 0.00 0.00 3.67
62 63 1.066573 CAGATTCAGAGAGGCGTTGGT 60.067 52.381 0.00 0.00 0.00 3.67
63 64 1.066573 ACAGATTCAGAGAGGCGTTGG 60.067 52.381 0.00 0.00 0.00 3.77
64 65 2.266554 GACAGATTCAGAGAGGCGTTG 58.733 52.381 0.00 0.00 0.00 4.10
65 66 1.205893 GGACAGATTCAGAGAGGCGTT 59.794 52.381 0.00 0.00 0.00 4.84
66 67 0.820871 GGACAGATTCAGAGAGGCGT 59.179 55.000 0.00 0.00 0.00 5.68
67 68 0.820226 TGGACAGATTCAGAGAGGCG 59.180 55.000 0.00 0.00 0.00 5.52
68 69 2.836262 CATGGACAGATTCAGAGAGGC 58.164 52.381 0.00 0.00 0.00 4.70
69 70 2.169978 TGCATGGACAGATTCAGAGAGG 59.830 50.000 0.00 0.00 0.00 3.69
70 71 3.538634 TGCATGGACAGATTCAGAGAG 57.461 47.619 0.00 0.00 0.00 3.20
71 72 3.516700 TCTTGCATGGACAGATTCAGAGA 59.483 43.478 0.00 0.00 0.00 3.10
72 73 3.622163 GTCTTGCATGGACAGATTCAGAG 59.378 47.826 13.29 0.00 34.23 3.35
73 74 3.262660 AGTCTTGCATGGACAGATTCAGA 59.737 43.478 18.31 0.00 36.29 3.27
74 75 3.374367 CAGTCTTGCATGGACAGATTCAG 59.626 47.826 18.31 0.00 36.29 3.02
75 76 3.340928 CAGTCTTGCATGGACAGATTCA 58.659 45.455 18.31 0.00 36.29 2.57
89 90 2.597713 TTGCACGCTCGCAGTCTTG 61.598 57.895 0.00 0.00 44.14 3.02
90 91 2.280119 TTGCACGCTCGCAGTCTT 60.280 55.556 0.00 0.00 44.14 3.01
91 92 3.038417 GTTGCACGCTCGCAGTCT 61.038 61.111 0.00 0.00 44.14 3.24
92 93 3.337889 TGTTGCACGCTCGCAGTC 61.338 61.111 0.00 0.00 44.14 3.51
93 94 3.640000 GTGTTGCACGCTCGCAGT 61.640 61.111 0.00 0.00 44.14 4.40
94 95 4.374702 GGTGTTGCACGCTCGCAG 62.375 66.667 0.00 0.00 44.14 5.18
111 112 3.007506 GGTTTGTTATGAAAAGGTGGGGG 59.992 47.826 0.00 0.00 0.00 5.40
112 113 3.643792 TGGTTTGTTATGAAAAGGTGGGG 59.356 43.478 0.00 0.00 0.00 4.96
113 114 4.946478 TGGTTTGTTATGAAAAGGTGGG 57.054 40.909 0.00 0.00 0.00 4.61
114 115 9.500785 AAATATTGGTTTGTTATGAAAAGGTGG 57.499 29.630 0.00 0.00 0.00 4.61
127 128 9.705290 GGTGACTTTAATGAAATATTGGTTTGT 57.295 29.630 0.00 0.00 0.00 2.83
128 129 8.859156 CGGTGACTTTAATGAAATATTGGTTTG 58.141 33.333 0.00 0.00 0.00 2.93
129 130 8.798402 TCGGTGACTTTAATGAAATATTGGTTT 58.202 29.630 0.00 0.00 0.00 3.27
130 131 8.343168 TCGGTGACTTTAATGAAATATTGGTT 57.657 30.769 0.00 0.00 0.00 3.67
131 132 7.067008 CCTCGGTGACTTTAATGAAATATTGGT 59.933 37.037 0.00 0.00 0.00 3.67
132 133 7.417612 CCTCGGTGACTTTAATGAAATATTGG 58.582 38.462 0.00 0.00 0.00 3.16
133 134 6.912591 GCCTCGGTGACTTTAATGAAATATTG 59.087 38.462 0.00 0.00 0.00 1.90
134 135 6.601613 TGCCTCGGTGACTTTAATGAAATATT 59.398 34.615 0.00 0.00 0.00 1.28
135 136 6.038271 GTGCCTCGGTGACTTTAATGAAATAT 59.962 38.462 0.00 0.00 0.00 1.28
136 137 5.353123 GTGCCTCGGTGACTTTAATGAAATA 59.647 40.000 0.00 0.00 0.00 1.40
137 138 4.156008 GTGCCTCGGTGACTTTAATGAAAT 59.844 41.667 0.00 0.00 0.00 2.17
138 139 3.500680 GTGCCTCGGTGACTTTAATGAAA 59.499 43.478 0.00 0.00 0.00 2.69
139 140 3.071479 GTGCCTCGGTGACTTTAATGAA 58.929 45.455 0.00 0.00 0.00 2.57
140 141 2.037902 TGTGCCTCGGTGACTTTAATGA 59.962 45.455 0.00 0.00 0.00 2.57
141 142 2.416547 CTGTGCCTCGGTGACTTTAATG 59.583 50.000 0.00 0.00 0.00 1.90
142 143 2.699954 CTGTGCCTCGGTGACTTTAAT 58.300 47.619 0.00 0.00 0.00 1.40
143 144 1.876416 GCTGTGCCTCGGTGACTTTAA 60.876 52.381 0.00 0.00 0.00 1.52
144 145 0.320421 GCTGTGCCTCGGTGACTTTA 60.320 55.000 0.00 0.00 0.00 1.85
145 146 1.598130 GCTGTGCCTCGGTGACTTT 60.598 57.895 0.00 0.00 0.00 2.66
146 147 2.031163 GCTGTGCCTCGGTGACTT 59.969 61.111 0.00 0.00 0.00 3.01
147 148 4.008933 GGCTGTGCCTCGGTGACT 62.009 66.667 0.73 0.00 46.69 3.41
157 158 3.050275 GGACGACCTTGGCTGTGC 61.050 66.667 0.00 0.00 0.00 4.57
158 159 2.738521 CGGACGACCTTGGCTGTG 60.739 66.667 1.72 0.00 0.00 3.66
159 160 4.003788 CCGGACGACCTTGGCTGT 62.004 66.667 0.00 0.00 0.00 4.40
162 163 4.699522 AAGCCGGACGACCTTGGC 62.700 66.667 5.05 13.39 41.11 4.52
163 164 2.742372 CAAGCCGGACGACCTTGG 60.742 66.667 5.05 0.00 33.96 3.61
164 165 2.742372 CCAAGCCGGACGACCTTG 60.742 66.667 5.05 8.86 36.56 3.61
165 166 3.239253 ACCAAGCCGGACGACCTT 61.239 61.111 5.05 0.00 38.63 3.50
166 167 4.003788 CACCAAGCCGGACGACCT 62.004 66.667 5.05 0.00 38.63 3.85
167 168 3.819877 AACACCAAGCCGGACGACC 62.820 63.158 5.05 0.00 38.63 4.79
168 169 2.280592 AACACCAAGCCGGACGAC 60.281 61.111 5.05 0.00 38.63 4.34
169 170 2.280524 CAACACCAAGCCGGACGA 60.281 61.111 5.05 0.00 38.63 4.20
170 171 4.025401 GCAACACCAAGCCGGACG 62.025 66.667 5.05 0.00 38.63 4.79
171 172 2.594592 AGCAACACCAAGCCGGAC 60.595 61.111 5.05 0.00 38.63 4.79
172 173 2.594303 CAGCAACACCAAGCCGGA 60.594 61.111 5.05 0.00 38.63 5.14
173 174 2.594303 TCAGCAACACCAAGCCGG 60.594 61.111 0.00 0.00 42.50 6.13
174 175 2.639286 GTCAGCAACACCAAGCCG 59.361 61.111 0.00 0.00 0.00 5.52
175 176 2.564721 GGGTCAGCAACACCAAGCC 61.565 63.158 1.62 0.00 35.35 4.35
176 177 1.799258 CTGGGTCAGCAACACCAAGC 61.799 60.000 1.62 0.00 35.35 4.01
177 178 0.179020 TCTGGGTCAGCAACACCAAG 60.179 55.000 1.62 0.00 36.38 3.61
178 179 0.257328 TTCTGGGTCAGCAACACCAA 59.743 50.000 1.62 0.00 35.35 3.67
179 180 0.179020 CTTCTGGGTCAGCAACACCA 60.179 55.000 1.62 0.00 35.35 4.17
180 181 1.518903 GCTTCTGGGTCAGCAACACC 61.519 60.000 0.00 0.00 35.95 4.16
181 182 1.518903 GGCTTCTGGGTCAGCAACAC 61.519 60.000 0.00 0.00 37.81 3.32
182 183 1.228245 GGCTTCTGGGTCAGCAACA 60.228 57.895 0.00 0.00 37.81 3.33
183 184 0.957888 GAGGCTTCTGGGTCAGCAAC 60.958 60.000 0.00 0.00 37.81 4.17
184 185 1.376466 GAGGCTTCTGGGTCAGCAA 59.624 57.895 0.00 0.00 37.81 3.91
185 186 1.842920 TGAGGCTTCTGGGTCAGCA 60.843 57.895 0.00 0.00 37.81 4.41
186 187 1.376553 GTGAGGCTTCTGGGTCAGC 60.377 63.158 0.00 0.00 35.07 4.26
187 188 0.036577 CAGTGAGGCTTCTGGGTCAG 60.037 60.000 11.20 0.00 0.00 3.51
188 189 0.471780 TCAGTGAGGCTTCTGGGTCA 60.472 55.000 16.54 0.00 33.13 4.02
189 190 0.687354 TTCAGTGAGGCTTCTGGGTC 59.313 55.000 16.54 0.00 33.13 4.46
190 191 0.398318 GTTCAGTGAGGCTTCTGGGT 59.602 55.000 16.54 0.00 33.13 4.51
191 192 0.397941 TGTTCAGTGAGGCTTCTGGG 59.602 55.000 16.54 0.00 33.13 4.45
192 193 2.260844 TTGTTCAGTGAGGCTTCTGG 57.739 50.000 16.54 0.00 33.13 3.86
193 194 2.031333 GCTTTGTTCAGTGAGGCTTCTG 60.031 50.000 12.38 12.38 0.00 3.02
194 195 2.225467 GCTTTGTTCAGTGAGGCTTCT 58.775 47.619 0.00 0.00 0.00 2.85
195 196 1.949525 TGCTTTGTTCAGTGAGGCTTC 59.050 47.619 0.00 0.00 0.00 3.86
196 197 2.057137 TGCTTTGTTCAGTGAGGCTT 57.943 45.000 0.00 0.00 0.00 4.35
197 198 2.283145 ATGCTTTGTTCAGTGAGGCT 57.717 45.000 0.00 0.00 0.00 4.58
198 199 2.608752 CCAATGCTTTGTTCAGTGAGGC 60.609 50.000 11.03 0.00 31.90 4.70
199 200 2.624838 ACCAATGCTTTGTTCAGTGAGG 59.375 45.455 11.03 0.00 31.90 3.86
200 201 3.996150 ACCAATGCTTTGTTCAGTGAG 57.004 42.857 11.03 0.00 31.90 3.51
201 202 3.698539 TGAACCAATGCTTTGTTCAGTGA 59.301 39.130 17.91 0.00 32.71 3.41
202 203 4.044336 TGAACCAATGCTTTGTTCAGTG 57.956 40.909 17.91 5.05 32.71 3.66
203 204 4.734398 TTGAACCAATGCTTTGTTCAGT 57.266 36.364 19.47 7.73 35.87 3.41
204 205 5.350633 TCTTTGAACCAATGCTTTGTTCAG 58.649 37.500 19.47 13.98 35.87 3.02
205 206 5.336150 TCTTTGAACCAATGCTTTGTTCA 57.664 34.783 17.91 17.91 34.26 3.18
206 207 4.209911 GCTCTTTGAACCAATGCTTTGTTC 59.790 41.667 11.03 13.32 0.00 3.18
207 208 4.122046 GCTCTTTGAACCAATGCTTTGTT 58.878 39.130 11.03 5.89 0.00 2.83
208 209 3.385755 AGCTCTTTGAACCAATGCTTTGT 59.614 39.130 11.03 0.00 0.00 2.83
209 210 3.986277 AGCTCTTTGAACCAATGCTTTG 58.014 40.909 5.37 5.37 0.00 2.77
210 211 4.677673 AAGCTCTTTGAACCAATGCTTT 57.322 36.364 0.00 0.00 34.16 3.51
211 212 4.099881 TGAAAGCTCTTTGAACCAATGCTT 59.900 37.500 0.00 0.00 36.84 3.91
212 213 3.638160 TGAAAGCTCTTTGAACCAATGCT 59.362 39.130 0.00 0.00 32.11 3.79
213 214 3.737774 GTGAAAGCTCTTTGAACCAATGC 59.262 43.478 0.00 0.00 32.11 3.56
214 215 4.935702 TGTGAAAGCTCTTTGAACCAATG 58.064 39.130 0.00 0.00 32.11 2.82
215 216 5.796424 ATGTGAAAGCTCTTTGAACCAAT 57.204 34.783 0.00 0.00 32.11 3.16
216 217 5.596836 AATGTGAAAGCTCTTTGAACCAA 57.403 34.783 0.00 0.00 32.11 3.67
217 218 5.596836 AAATGTGAAAGCTCTTTGAACCA 57.403 34.783 0.00 0.00 32.11 3.67
218 219 6.908870 AAAAATGTGAAAGCTCTTTGAACC 57.091 33.333 0.00 0.00 32.11 3.62
253 254 3.642705 GCCGAATGTGAAAGCTCTTTTT 58.357 40.909 0.00 0.00 32.11 1.94
254 255 2.350772 CGCCGAATGTGAAAGCTCTTTT 60.351 45.455 0.00 0.00 32.11 2.27
255 256 1.197721 CGCCGAATGTGAAAGCTCTTT 59.802 47.619 0.00 0.00 35.14 2.52
256 257 0.798776 CGCCGAATGTGAAAGCTCTT 59.201 50.000 0.00 0.00 0.00 2.85
257 258 1.639298 GCGCCGAATGTGAAAGCTCT 61.639 55.000 0.00 0.00 0.00 4.09
258 259 1.226128 GCGCCGAATGTGAAAGCTC 60.226 57.895 0.00 0.00 0.00 4.09
259 260 1.639298 GAGCGCCGAATGTGAAAGCT 61.639 55.000 2.29 0.00 36.06 3.74
260 261 1.226128 GAGCGCCGAATGTGAAAGC 60.226 57.895 2.29 0.00 0.00 3.51
261 262 0.798776 AAGAGCGCCGAATGTGAAAG 59.201 50.000 2.29 0.00 0.00 2.62
262 263 1.196808 GAAAGAGCGCCGAATGTGAAA 59.803 47.619 2.29 0.00 0.00 2.69
271 272 4.697756 TGTGGGGAAAGAGCGCCG 62.698 66.667 2.29 0.00 43.30 6.46
274 275 0.109132 GCATTTGTGGGGAAAGAGCG 60.109 55.000 0.00 0.00 0.00 5.03
300 302 3.850752 TGGAGGGGTGAAGCAATAAAAA 58.149 40.909 0.00 0.00 0.00 1.94
310 312 1.688811 CCGGATTTGGAGGGGTGAA 59.311 57.895 0.00 0.00 0.00 3.18
405 408 3.665848 CGCTCGCGGTAAATCTTTTTGAA 60.666 43.478 6.13 0.00 35.56 2.69
451 454 1.524008 CGGGGTTCTGGGCTTTTCAC 61.524 60.000 0.00 0.00 0.00 3.18
507 513 1.666872 GGGTTGAGGTCGTTGGTCG 60.667 63.158 0.00 0.00 41.41 4.79
517 530 2.070039 TCTATGGGGCGGGTTGAGG 61.070 63.158 0.00 0.00 0.00 3.86
548 561 1.364171 GTGTCAGTGAGACTGCCGT 59.636 57.895 12.97 0.00 45.54 5.68
550 563 1.004440 GGGTGTCAGTGAGACTGCC 60.004 63.158 18.87 9.72 45.54 4.85
584 597 4.056125 TGAGCCAGAGTCGCACGG 62.056 66.667 0.00 0.00 0.00 4.94
587 600 2.601666 AGGTGAGCCAGAGTCGCA 60.602 61.111 0.00 0.00 37.19 5.10
592 605 2.985456 GGTCCAGGTGAGCCAGAG 59.015 66.667 0.00 0.00 35.38 3.35
645 658 4.815108 GGGCGTGGGGGTGAATCC 62.815 72.222 0.00 0.00 0.00 3.01
714 728 2.753043 GCATCAGTGGCTGGGTGG 60.753 66.667 0.00 0.00 31.51 4.61
740 754 1.153429 GTGGGTCACGTATCCTGGC 60.153 63.158 7.87 0.00 0.00 4.85
750 764 2.108157 TGACTGCACGTGGGTCAC 59.892 61.111 18.88 0.00 35.44 3.67
751 765 2.108157 GTGACTGCACGTGGGTCA 59.892 61.111 18.88 5.91 37.60 4.02
766 780 3.645975 GGAACCGCCACACGTGTG 61.646 66.667 36.13 36.13 45.23 3.82
767 781 3.802418 GAGGAACCGCCACACGTGT 62.802 63.158 17.22 17.22 41.42 4.49
816 830 0.730840 GGGTATTTGAAGCCGAACCG 59.269 55.000 0.00 0.00 0.00 4.44
836 850 0.753848 CCGGAGAAGGAGGAGAGGTC 60.754 65.000 0.00 0.00 0.00 3.85
871 895 1.384525 TTTCGGAAGTGGTGTTGTGG 58.615 50.000 0.00 0.00 0.00 4.17
884 908 4.324267 GAAGGAGTTTTGAGGATTTCGGA 58.676 43.478 0.00 0.00 0.00 4.55
955 996 2.809952 CTCGAGAGGAACCCTACCC 58.190 63.158 6.58 0.00 31.76 3.69
966 1007 0.688087 AAACCCTAGCCCCTCGAGAG 60.688 60.000 15.71 0.00 0.00 3.20
967 1008 0.252558 AAAACCCTAGCCCCTCGAGA 60.253 55.000 15.71 0.00 0.00 4.04
968 1009 0.618981 AAAAACCCTAGCCCCTCGAG 59.381 55.000 5.13 5.13 0.00 4.04
969 1010 2.781631 AAAAACCCTAGCCCCTCGA 58.218 52.632 0.00 0.00 0.00 4.04
1077 1138 3.465403 CTGTCCTCGAGCCCCTGG 61.465 72.222 6.99 0.00 0.00 4.45
1185 1246 1.490621 CCAAAACAGCAAGGCGAAAG 58.509 50.000 0.00 0.00 0.00 2.62
1186 1247 0.103937 CCCAAAACAGCAAGGCGAAA 59.896 50.000 0.00 0.00 0.00 3.46
1187 1248 1.739049 CCCAAAACAGCAAGGCGAA 59.261 52.632 0.00 0.00 0.00 4.70
1188 1249 2.199652 CCCCAAAACAGCAAGGCGA 61.200 57.895 0.00 0.00 0.00 5.54
1189 1250 2.146073 CTCCCCAAAACAGCAAGGCG 62.146 60.000 0.00 0.00 0.00 5.52
1190 1251 1.115326 ACTCCCCAAAACAGCAAGGC 61.115 55.000 0.00 0.00 0.00 4.35
1191 1252 1.413118 AACTCCCCAAAACAGCAAGG 58.587 50.000 0.00 0.00 0.00 3.61
1192 1253 3.541996 AAAACTCCCCAAAACAGCAAG 57.458 42.857 0.00 0.00 0.00 4.01
1193 1254 3.517500 AGAAAAACTCCCCAAAACAGCAA 59.482 39.130 0.00 0.00 0.00 3.91
1194 1255 3.103742 AGAAAAACTCCCCAAAACAGCA 58.896 40.909 0.00 0.00 0.00 4.41
1195 1256 3.118775 ACAGAAAAACTCCCCAAAACAGC 60.119 43.478 0.00 0.00 0.00 4.40
1196 1257 4.432712 CACAGAAAAACTCCCCAAAACAG 58.567 43.478 0.00 0.00 0.00 3.16
1239 1431 2.295909 GGAAGCACAGCACATTAAACCA 59.704 45.455 0.00 0.00 0.00 3.67
1256 1451 0.891373 TCCTTCTCGTCTGCAGGAAG 59.109 55.000 15.13 17.15 32.19 3.46
1260 1455 2.662006 TTCATCCTTCTCGTCTGCAG 57.338 50.000 7.63 7.63 0.00 4.41
1276 1471 2.032634 GTCCGCACTCGCCATTTCA 61.033 57.895 0.00 0.00 33.11 2.69
1318 1513 2.604686 AGGCTCTCCACCTGCGAA 60.605 61.111 0.00 0.00 35.72 4.70
1340 1535 2.037251 AGCGGTCATCCATACCATGTAC 59.963 50.000 0.00 0.00 36.78 2.90
1342 1537 1.070758 GAGCGGTCATCCATACCATGT 59.929 52.381 10.30 0.00 36.78 3.21
1381 1580 6.483974 TCGTCCAAACTACTGAAGCAAAATTA 59.516 34.615 0.00 0.00 0.00 1.40
1393 1592 1.538047 TACGCCTCGTCCAAACTACT 58.462 50.000 0.00 0.00 41.54 2.57
1416 1615 3.813800 CATGAAACTTCACATGACCACG 58.186 45.455 0.00 0.00 44.28 4.94
1452 1663 0.811616 GTAATCAGCAGACCCCGCAG 60.812 60.000 0.00 0.00 0.00 5.18
1455 1666 2.332063 ATTGTAATCAGCAGACCCCG 57.668 50.000 0.00 0.00 0.00 5.73
1463 1674 8.616076 AGATACAGCAACTAAATTGTAATCAGC 58.384 33.333 0.00 0.00 40.77 4.26
1469 1680 6.878923 AGCACAGATACAGCAACTAAATTGTA 59.121 34.615 0.00 0.00 40.77 2.41
1474 1685 3.436704 GCAGCACAGATACAGCAACTAAA 59.563 43.478 0.00 0.00 0.00 1.85
1475 1686 3.002791 GCAGCACAGATACAGCAACTAA 58.997 45.455 0.00 0.00 0.00 2.24
1476 1687 2.234661 AGCAGCACAGATACAGCAACTA 59.765 45.455 0.00 0.00 0.00 2.24
1477 1688 1.002888 AGCAGCACAGATACAGCAACT 59.997 47.619 0.00 0.00 0.00 3.16
1479 1690 1.676916 GGAGCAGCACAGATACAGCAA 60.677 52.381 0.00 0.00 0.00 3.91
1499 1710 1.071605 GGAGCAAACACAGAGTAGCG 58.928 55.000 0.00 0.00 36.73 4.26
1520 1732 6.146021 GGCAAAAACTTGTCCATGTTTATCAG 59.854 38.462 10.53 4.56 37.59 2.90
1527 1739 4.039124 CCTAAGGCAAAAACTTGTCCATGT 59.961 41.667 0.00 0.00 0.00 3.21
1528 1740 4.559153 CCTAAGGCAAAAACTTGTCCATG 58.441 43.478 0.00 0.00 0.00 3.66
1529 1741 3.578282 CCCTAAGGCAAAAACTTGTCCAT 59.422 43.478 0.00 0.00 0.00 3.41
1530 1742 2.962421 CCCTAAGGCAAAAACTTGTCCA 59.038 45.455 0.00 0.00 0.00 4.02
1531 1743 3.227614 TCCCTAAGGCAAAAACTTGTCC 58.772 45.455 0.00 0.00 0.00 4.02
1532 1744 4.617959 GTTCCCTAAGGCAAAAACTTGTC 58.382 43.478 0.00 0.00 0.00 3.18
1536 1748 1.611977 GCGTTCCCTAAGGCAAAAACT 59.388 47.619 0.00 0.00 44.13 2.66
1551 1763 5.164061 GGATTCAAATGTCAAACATGCGTTC 60.164 40.000 0.00 0.00 37.97 3.95
1596 1808 6.437928 CAAAAGTGCAACAGAGCAGTAAATA 58.562 36.000 0.00 0.00 46.90 1.40
1598 1810 4.671377 CAAAAGTGCAACAGAGCAGTAAA 58.329 39.130 0.00 0.00 46.90 2.01
1662 1925 3.797546 GCAGCAGAGAGGCGCAAC 61.798 66.667 10.83 1.62 39.27 4.17
1666 1929 2.047465 AACTGCAGCAGAGAGGCG 60.047 61.111 29.70 1.19 39.27 5.52
1671 1934 1.669779 GGCTTATGAACTGCAGCAGAG 59.330 52.381 29.70 15.18 35.18 3.35
1672 1935 1.679944 GGGCTTATGAACTGCAGCAGA 60.680 52.381 29.70 7.12 35.18 4.26
1673 1936 0.737219 GGGCTTATGAACTGCAGCAG 59.263 55.000 21.54 21.54 37.52 4.24
1686 1949 0.691078 CTACCTGCTCCCTGGGCTTA 60.691 60.000 8.22 0.00 34.59 3.09
1689 1952 4.182433 GCTACCTGCTCCCTGGGC 62.182 72.222 8.22 0.00 38.95 5.36
1800 2063 1.002468 CCAAACTTGTTGAGGAGTGCG 60.002 52.381 0.65 0.00 0.00 5.34
1824 2087 0.107508 CACCATCGGCATCTCCTTGT 60.108 55.000 0.00 0.00 0.00 3.16
1830 2093 1.690633 ACCCTCACCATCGGCATCT 60.691 57.895 0.00 0.00 0.00 2.90
1973 2236 6.748132 ACATGGTTAGTCAGTTGAAATTTGG 58.252 36.000 0.00 0.00 0.00 3.28
1993 2256 6.162079 CCTGTCAGAATAGTAGCCATACATG 58.838 44.000 0.00 0.00 34.07 3.21
2071 2334 1.192146 TACTCGGCCTTGCAGTCCTT 61.192 55.000 0.00 0.00 0.00 3.36
2095 2358 1.811266 CACCTGTTCAGGGCGATCG 60.811 63.158 20.88 11.69 0.00 3.69
2138 2403 6.207417 ACAGAAAACATAGATGACCCTGTTTG 59.793 38.462 0.00 0.00 40.03 2.93
2145 2410 6.381801 CACCAAACAGAAAACATAGATGACC 58.618 40.000 0.00 0.00 0.00 4.02
2183 2448 9.935241 CAATATCAACTGCAATAGAGTATAGGT 57.065 33.333 0.00 0.00 0.00 3.08
2196 2461 7.252708 CAGCAATTTAGTCAATATCAACTGCA 58.747 34.615 0.00 0.00 0.00 4.41
2221 2486 9.804758 ACTTCTACAGTAAATATGTCTAAGTGC 57.195 33.333 5.63 0.00 35.81 4.40
2263 2550 9.582648 ACAATAGTATAAACCCCACCATAAATC 57.417 33.333 0.00 0.00 0.00 2.17
2269 2556 7.931046 AGTTTACAATAGTATAAACCCCACCA 58.069 34.615 0.74 0.00 40.60 4.17
2319 2606 7.624360 ACCGCTCAATTATTCAATTCAACTA 57.376 32.000 0.00 0.00 31.82 2.24
2320 2607 6.515272 ACCGCTCAATTATTCAATTCAACT 57.485 33.333 0.00 0.00 31.82 3.16
2321 2608 8.856490 AATACCGCTCAATTATTCAATTCAAC 57.144 30.769 0.00 0.00 31.82 3.18
2322 2609 9.299963 CAAATACCGCTCAATTATTCAATTCAA 57.700 29.630 0.00 0.00 31.82 2.69
2330 2617 3.957497 TGCCCAAATACCGCTCAATTATT 59.043 39.130 0.00 0.00 0.00 1.40
2342 2629 8.601845 AAGTTTAAGAAAACATGCCCAAATAC 57.398 30.769 0.00 0.00 46.18 1.89
2358 2645 9.131791 AGGAGAACAAAGCAATTAAGTTTAAGA 57.868 29.630 0.00 0.00 0.00 2.10
2367 2654 6.916360 ATGGAAAGGAGAACAAAGCAATTA 57.084 33.333 0.00 0.00 0.00 1.40
2369 2656 5.544650 CAATGGAAAGGAGAACAAAGCAAT 58.455 37.500 0.00 0.00 0.00 3.56
2373 2660 4.589216 TGCAATGGAAAGGAGAACAAAG 57.411 40.909 0.00 0.00 0.00 2.77
2430 2717 7.604164 TGCCACTTGTCTTAACAAAATGAAAAA 59.396 29.630 4.59 0.00 44.53 1.94
2436 2723 4.649218 ACCTGCCACTTGTCTTAACAAAAT 59.351 37.500 0.00 0.00 44.53 1.82
2437 2724 4.020543 ACCTGCCACTTGTCTTAACAAAA 58.979 39.130 0.00 0.00 44.53 2.44
2441 2728 3.003378 GTGAACCTGCCACTTGTCTTAAC 59.997 47.826 0.00 0.00 0.00 2.01
2442 2729 3.211045 GTGAACCTGCCACTTGTCTTAA 58.789 45.455 0.00 0.00 0.00 1.85
2444 2731 1.064758 TGTGAACCTGCCACTTGTCTT 60.065 47.619 0.00 0.00 35.66 3.01
2446 2733 0.663153 GTGTGAACCTGCCACTTGTC 59.337 55.000 0.00 0.00 35.66 3.18
2447 2734 0.255890 AGTGTGAACCTGCCACTTGT 59.744 50.000 0.00 0.00 36.03 3.16
2463 2750 6.949352 AGGTAATGAATAGCCAATGAAGTG 57.051 37.500 0.00 0.00 32.22 3.16
2521 2808 1.121407 ACCACACTGACTGCTAGGCA 61.121 55.000 0.00 0.00 36.92 4.75
2546 2833 6.833041 TGTAGAAGGTTTGTGATAGTTGGAA 58.167 36.000 0.00 0.00 0.00 3.53
2547 2834 6.428083 TGTAGAAGGTTTGTGATAGTTGGA 57.572 37.500 0.00 0.00 0.00 3.53
2548 2835 7.530010 CAATGTAGAAGGTTTGTGATAGTTGG 58.470 38.462 0.00 0.00 0.00 3.77
2549 2836 7.023575 GCAATGTAGAAGGTTTGTGATAGTTG 58.976 38.462 0.00 0.00 0.00 3.16
2555 2842 4.460263 AGTGCAATGTAGAAGGTTTGTGA 58.540 39.130 0.00 0.00 0.00 3.58
2556 2843 4.836125 AGTGCAATGTAGAAGGTTTGTG 57.164 40.909 0.00 0.00 0.00 3.33
2566 2853 6.919662 ACAAAAGATCAACAAGTGCAATGTAG 59.080 34.615 6.81 0.00 0.00 2.74
2595 2882 2.651382 AAGTTACAACCACCACCTCC 57.349 50.000 0.00 0.00 0.00 4.30
2609 2896 5.352293 CAGAATGCTGCTGTGACATAAGTTA 59.648 40.000 0.00 0.00 34.95 2.24
2611 2898 3.688185 CAGAATGCTGCTGTGACATAAGT 59.312 43.478 0.00 0.00 34.95 2.24
2694 2982 8.997621 AATGAGCTAAACGAACTTGATAGTTA 57.002 30.769 0.00 0.00 44.51 2.24
2731 3020 1.462616 TGAAGATGGCCAAACATCCG 58.537 50.000 10.96 0.00 46.56 4.18
2758 3047 5.794894 ACAACTGGTCTTGGTATAACAGAG 58.205 41.667 0.00 0.00 0.00 3.35
2813 3102 6.552445 ACAGCTATAACAGAACCAAGAGAT 57.448 37.500 0.00 0.00 0.00 2.75
2815 3104 7.721402 AGATACAGCTATAACAGAACCAAGAG 58.279 38.462 0.00 0.00 0.00 2.85
2820 3109 7.382759 GCACTTAGATACAGCTATAACAGAACC 59.617 40.741 0.00 0.00 0.00 3.62
2827 3116 9.132923 ACTACTTGCACTTAGATACAGCTATAA 57.867 33.333 7.61 0.00 0.00 0.98
2843 3140 4.003648 AGCCAAACATAGACTACTTGCAC 58.996 43.478 0.00 0.00 0.00 4.57
2862 3159 5.759963 CAAGCAGATTCAATTAGATGAGCC 58.240 41.667 0.00 0.00 0.00 4.70
2890 3187 9.991906 ATGAGCTAAATGAATTTGATAATTGGG 57.008 29.630 0.00 0.00 34.16 4.12
2917 3216 5.808366 TGCCAAACACCCATTTACAAATA 57.192 34.783 0.00 0.00 0.00 1.40
2921 3220 3.300388 TCTTGCCAAACACCCATTTACA 58.700 40.909 0.00 0.00 0.00 2.41
2922 3221 4.021544 TCATCTTGCCAAACACCCATTTAC 60.022 41.667 0.00 0.00 0.00 2.01
2930 3229 3.798337 CACAAACTCATCTTGCCAAACAC 59.202 43.478 0.00 0.00 0.00 3.32
2994 3293 9.452287 TCATGAGATGACAGAATACAAAATGAA 57.548 29.630 0.00 0.00 33.59 2.57
3007 3306 5.448768 GCCAAAACTGATCATGAGATGACAG 60.449 44.000 0.09 8.06 43.01 3.51
3015 3314 5.011586 TGATCTTGCCAAAACTGATCATGA 58.988 37.500 0.00 0.00 38.67 3.07
3163 3468 4.170256 TGTTCAAAACAAGGTTTTCGAGC 58.830 39.130 4.23 8.29 38.72 5.03
3189 3494 2.190841 ACCGTTTGGGCAAAGGACG 61.191 57.895 0.00 0.00 40.62 4.79
3299 3604 4.389687 ACAAAAGAGCAACAAAGCAACAAG 59.610 37.500 0.00 0.00 36.85 3.16
3310 3615 2.427095 AGGACACCAACAAAAGAGCAAC 59.573 45.455 0.00 0.00 0.00 4.17
3329 3635 9.809096 GATACACAACAGGATATACATGATAGG 57.191 37.037 0.00 0.00 34.19 2.57
3361 3669 6.529220 GGAGCTGTTCCAGTTGATAGAATAT 58.471 40.000 5.59 0.00 46.01 1.28
3401 3709 1.228644 TGAGGCAATTGCACCAGCT 60.229 52.632 30.32 18.11 44.36 4.24
3455 3763 5.876357 AGTACCTGCCAGTCTTTAAAATCA 58.124 37.500 0.00 0.00 0.00 2.57
3482 3790 4.082081 GTGAAAATGGCATTCAGTGATGGA 60.082 41.667 14.04 0.00 37.46 3.41
3483 3791 4.178540 GTGAAAATGGCATTCAGTGATGG 58.821 43.478 14.04 0.00 37.46 3.51
3489 3797 7.694784 GCATTTAATTGTGAAAATGGCATTCAG 59.305 33.333 14.04 0.00 41.35 3.02
3493 3801 6.879993 TCAGCATTTAATTGTGAAAATGGCAT 59.120 30.769 11.51 0.00 41.35 4.40
3531 3839 8.331931 ACACAACCTCCCTAAAAGATGATATA 57.668 34.615 0.00 0.00 0.00 0.86
3536 3844 6.472887 TCTTACACAACCTCCCTAAAAGATG 58.527 40.000 0.00 0.00 0.00 2.90
3544 3852 4.227300 TGCAATATCTTACACAACCTCCCT 59.773 41.667 0.00 0.00 0.00 4.20
3593 3922 4.037089 GGTCCCGTGTGTTTGATAAAACTT 59.963 41.667 7.22 0.00 33.95 2.66
3595 3924 3.315749 TGGTCCCGTGTGTTTGATAAAAC 59.684 43.478 0.00 0.00 0.00 2.43
3611 3944 3.665745 TTTGTCTTACGTACTGGTCCC 57.334 47.619 0.00 0.00 0.00 4.46
3612 3945 4.387862 CACATTTGTCTTACGTACTGGTCC 59.612 45.833 0.00 0.00 0.00 4.46
3622 3955 2.293122 TGCTGCCACACATTTGTCTTAC 59.707 45.455 0.00 0.00 31.66 2.34
3623 3956 2.580962 TGCTGCCACACATTTGTCTTA 58.419 42.857 0.00 0.00 31.66 2.10
3624 3957 1.401761 TGCTGCCACACATTTGTCTT 58.598 45.000 0.00 0.00 31.66 3.01
3626 3959 1.670674 CCATGCTGCCACACATTTGTC 60.671 52.381 0.00 0.00 31.66 3.18
3629 3962 0.319083 CACCATGCTGCCACACATTT 59.681 50.000 0.00 0.00 0.00 2.32
3632 3965 2.194889 CACACCATGCTGCCACACA 61.195 57.895 0.00 0.00 0.00 3.72
3633 3966 1.454572 TTCACACCATGCTGCCACAC 61.455 55.000 0.00 0.00 0.00 3.82
3634 3967 0.540133 ATTCACACCATGCTGCCACA 60.540 50.000 0.00 0.00 0.00 4.17
3635 3968 0.604578 AATTCACACCATGCTGCCAC 59.395 50.000 0.00 0.00 0.00 5.01
3636 3969 2.212812 TAATTCACACCATGCTGCCA 57.787 45.000 0.00 0.00 0.00 4.92
3637 3970 3.591196 TTTAATTCACACCATGCTGCC 57.409 42.857 0.00 0.00 0.00 4.85
3641 3975 4.746729 TGAGCATTTAATTCACACCATGC 58.253 39.130 0.00 0.00 37.82 4.06
3672 4006 6.997476 TGTATGATTATTGCACAGCTTCCATA 59.003 34.615 0.00 0.00 0.00 2.74
3678 4012 6.764308 AAACTGTATGATTATTGCACAGCT 57.236 33.333 0.00 0.00 40.17 4.24
3679 4013 7.008628 GTGAAAACTGTATGATTATTGCACAGC 59.991 37.037 0.00 0.00 40.17 4.40
3680 4014 7.485913 GGTGAAAACTGTATGATTATTGCACAG 59.514 37.037 0.00 0.00 41.83 3.66
3681 4015 7.040132 TGGTGAAAACTGTATGATTATTGCACA 60.040 33.333 0.00 0.00 0.00 4.57
3682 4016 7.312154 TGGTGAAAACTGTATGATTATTGCAC 58.688 34.615 0.00 0.00 0.00 4.57
3683 4017 7.459795 TGGTGAAAACTGTATGATTATTGCA 57.540 32.000 0.00 0.00 0.00 4.08
3684 4018 8.931385 AATGGTGAAAACTGTATGATTATTGC 57.069 30.769 0.00 0.00 0.00 3.56
3689 4023 9.241919 TGTGATAATGGTGAAAACTGTATGATT 57.758 29.630 0.00 0.00 0.00 2.57
3690 4024 8.677300 GTGTGATAATGGTGAAAACTGTATGAT 58.323 33.333 0.00 0.00 0.00 2.45
3691 4025 7.663493 TGTGTGATAATGGTGAAAACTGTATGA 59.337 33.333 0.00 0.00 0.00 2.15
3692 4026 7.815641 TGTGTGATAATGGTGAAAACTGTATG 58.184 34.615 0.00 0.00 0.00 2.39
3693 4027 7.994425 TGTGTGATAATGGTGAAAACTGTAT 57.006 32.000 0.00 0.00 0.00 2.29
3694 4028 7.809546 TTGTGTGATAATGGTGAAAACTGTA 57.190 32.000 0.00 0.00 0.00 2.74
3695 4029 6.707440 TTGTGTGATAATGGTGAAAACTGT 57.293 33.333 0.00 0.00 0.00 3.55
3696 4030 6.420604 GGTTTGTGTGATAATGGTGAAAACTG 59.579 38.462 0.00 0.00 0.00 3.16
3697 4031 6.097554 TGGTTTGTGTGATAATGGTGAAAACT 59.902 34.615 0.00 0.00 0.00 2.66
3698 4032 6.276847 TGGTTTGTGTGATAATGGTGAAAAC 58.723 36.000 0.00 0.00 0.00 2.43
3699 4033 6.471233 TGGTTTGTGTGATAATGGTGAAAA 57.529 33.333 0.00 0.00 0.00 2.29
3700 4034 6.471233 TTGGTTTGTGTGATAATGGTGAAA 57.529 33.333 0.00 0.00 0.00 2.69
3701 4035 6.276847 GTTTGGTTTGTGTGATAATGGTGAA 58.723 36.000 0.00 0.00 0.00 3.18
3702 4036 5.506483 CGTTTGGTTTGTGTGATAATGGTGA 60.506 40.000 0.00 0.00 0.00 4.02
3703 4037 4.679197 CGTTTGGTTTGTGTGATAATGGTG 59.321 41.667 0.00 0.00 0.00 4.17
3704 4038 4.339814 ACGTTTGGTTTGTGTGATAATGGT 59.660 37.500 0.00 0.00 0.00 3.55
3705 4039 4.865776 ACGTTTGGTTTGTGTGATAATGG 58.134 39.130 0.00 0.00 0.00 3.16
3706 4040 7.272515 GGAATACGTTTGGTTTGTGTGATAATG 59.727 37.037 0.00 0.00 0.00 1.90
3707 4041 7.175990 AGGAATACGTTTGGTTTGTGTGATAAT 59.824 33.333 0.00 0.00 0.00 1.28
3732 4066 5.587388 ATGTAAATTGACATTCCCAGCAG 57.413 39.130 2.22 0.00 36.64 4.24
3742 4093 6.210385 ACATGGGTTAGCAATGTAAATTGACA 59.790 34.615 9.96 0.00 32.86 3.58
3755 4106 1.352687 TGGCAAGTACATGGGTTAGCA 59.647 47.619 0.00 0.00 0.00 3.49
3761 4112 0.881118 GTGTGTGGCAAGTACATGGG 59.119 55.000 0.00 0.00 0.00 4.00
3777 4128 5.860941 ACAGATTGATTAGATCGGAGTGT 57.139 39.130 0.00 0.00 0.00 3.55
3813 4164 3.385577 GACGATCCCTTTCATGAGCTAC 58.614 50.000 0.00 0.00 0.00 3.58
3836 4187 1.289160 CATCAGTTCTTCCCCCTCCA 58.711 55.000 0.00 0.00 0.00 3.86
3932 4283 1.567175 GCACCTCCCCCTGGTTATTTA 59.433 52.381 0.00 0.00 35.28 1.40
4361 4748 0.611062 GCCCACCCCTACAAAAGTCC 60.611 60.000 0.00 0.00 0.00 3.85
4362 4749 0.111639 TGCCCACCCCTACAAAAGTC 59.888 55.000 0.00 0.00 0.00 3.01
4363 4750 0.558712 TTGCCCACCCCTACAAAAGT 59.441 50.000 0.00 0.00 0.00 2.66
4459 4853 2.704725 AATGCAGCAGTAAACCAACG 57.295 45.000 0.00 0.00 0.00 4.10
4543 4949 6.636454 TCTTGGTCAGTTTGGGATTAGTAT 57.364 37.500 0.00 0.00 0.00 2.12
4544 4950 6.183361 TGTTCTTGGTCAGTTTGGGATTAGTA 60.183 38.462 0.00 0.00 0.00 1.82
4546 4952 5.070001 TGTTCTTGGTCAGTTTGGGATTAG 58.930 41.667 0.00 0.00 0.00 1.73
4547 4953 5.055265 TGTTCTTGGTCAGTTTGGGATTA 57.945 39.130 0.00 0.00 0.00 1.75
4548 4954 3.909732 TGTTCTTGGTCAGTTTGGGATT 58.090 40.909 0.00 0.00 0.00 3.01
4552 5102 3.221771 TGGATGTTCTTGGTCAGTTTGG 58.778 45.455 0.00 0.00 0.00 3.28
4603 5154 2.535984 GTCCAGACGAGTGATAATTGCG 59.464 50.000 0.00 0.00 0.00 4.85
4628 5179 2.099405 CCATGGCGTAAATTGTTCCCT 58.901 47.619 0.00 0.00 0.00 4.20
4685 5236 4.920112 CACCCGAACGTGGTGCCA 62.920 66.667 10.27 0.00 46.13 4.92
4735 5289 1.542547 CGACAACCCTAACAGTTGCCT 60.543 52.381 3.66 0.00 46.85 4.75
4752 5306 9.443283 CTTAATGGATGAATCAAAAGAATCGAC 57.557 33.333 0.00 0.00 0.00 4.20
4771 5325 7.962918 CCAATGTCGTTTAAGAAGACTTAATGG 59.037 37.037 0.00 0.00 44.59 3.16
4792 5646 1.372582 CGTCCAGTCACCATCCAATG 58.627 55.000 0.00 0.00 0.00 2.82
4873 5727 8.490355 CCTTTAAATTTTGACAATGAACAGAGC 58.510 33.333 0.00 0.00 0.00 4.09
4874 5728 9.748708 TCCTTTAAATTTTGACAATGAACAGAG 57.251 29.630 0.00 0.00 0.00 3.35
4892 5746 4.656575 CACCCCCTTCCTTTTTCCTTTAAA 59.343 41.667 0.00 0.00 0.00 1.52
4904 5758 6.668133 TTTATTATCTTTCACCCCCTTCCT 57.332 37.500 0.00 0.00 0.00 3.36
4905 5759 7.914427 ATTTTATTATCTTTCACCCCCTTCC 57.086 36.000 0.00 0.00 0.00 3.46
4906 5760 9.817809 GAAATTTTATTATCTTTCACCCCCTTC 57.182 33.333 0.00 0.00 0.00 3.46
4911 5765 7.489160 AGCCGAAATTTTATTATCTTTCACCC 58.511 34.615 0.00 0.00 0.00 4.61
4932 5786 8.603242 ACATTATTGGTATTTAGAGTAAGCCG 57.397 34.615 0.00 0.00 0.00 5.52
4939 5793 7.172703 GGGACCGAACATTATTGGTATTTAGAG 59.827 40.741 0.00 0.00 37.20 2.43
4952 5808 2.232941 GTCAGTCTGGGACCGAACATTA 59.767 50.000 0.00 0.00 32.18 1.90
4953 5809 1.002087 GTCAGTCTGGGACCGAACATT 59.998 52.381 0.00 0.00 32.18 2.71
5004 5860 5.010112 TCTGGAGAGTTATAGAATCAAGCCG 59.990 44.000 0.00 0.00 0.00 5.52
5136 5992 4.156556 CCGAGAATGGATTTGCTTTTGAGA 59.843 41.667 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.