Multiple sequence alignment - TraesCS7D01G395900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G395900 chr7D 100.000 4714 0 0 1 4714 510612413 510607700 0.000000e+00 8706.0
1 TraesCS7D01G395900 chr7D 97.749 311 5 2 2129 2439 598495349 598495657 6.940000e-148 534.0
2 TraesCS7D01G395900 chr7D 96.429 196 7 0 4072 4267 181008035 181008230 1.640000e-84 324.0
3 TraesCS7D01G395900 chr7A 92.357 2172 85 25 1 2129 581373234 581371101 0.000000e+00 3016.0
4 TraesCS7D01G395900 chr7A 93.012 1245 50 13 2434 3662 581371104 581369881 0.000000e+00 1783.0
5 TraesCS7D01G395900 chr7A 89.664 387 30 4 3662 4040 581369909 581369525 7.090000e-133 484.0
6 TraesCS7D01G395900 chr7A 90.160 376 27 6 4282 4650 581369493 581369121 9.170000e-132 481.0
7 TraesCS7D01G395900 chr7A 97.059 68 2 0 4647 4714 581369098 581369031 1.070000e-21 115.0
8 TraesCS7D01G395900 chr7B 94.250 1113 45 10 1 1107 539217266 539216167 0.000000e+00 1683.0
9 TraesCS7D01G395900 chr7B 83.705 896 77 27 1113 1977 539216125 539215268 0.000000e+00 782.0
10 TraesCS7D01G395900 chr7B 85.689 559 62 10 2618 3168 539212473 539211925 1.470000e-159 573.0
11 TraesCS7D01G395900 chr7B 84.942 518 42 22 3532 4040 539196847 539196357 4.240000e-135 492.0
12 TraesCS7D01G395900 chr7B 84.163 221 24 5 3218 3434 539211935 539211722 2.220000e-48 204.0
13 TraesCS7D01G395900 chr5A 99.349 307 2 0 2129 2435 630123780 630124086 1.480000e-154 556.0
14 TraesCS7D01G395900 chr5A 97.778 315 7 0 2125 2439 611029587 611029901 1.150000e-150 544.0
15 TraesCS7D01G395900 chr5D 98.697 307 4 0 2129 2435 352931964 352931658 3.210000e-151 545.0
16 TraesCS7D01G395900 chr5D 92.727 55 2 2 3163 3216 506228511 506228564 1.410000e-10 78.7
17 TraesCS7D01G395900 chr4D 98.371 307 5 0 2129 2435 43651707 43651401 1.490000e-149 540.0
18 TraesCS7D01G395900 chr4D 95.025 201 9 1 4071 4271 42233762 42233563 9.850000e-82 315.0
19 TraesCS7D01G395900 chr2D 97.749 311 6 1 2129 2439 321717857 321717548 6.940000e-148 534.0
20 TraesCS7D01G395900 chr2D 96.923 195 4 2 4080 4272 532608205 532608011 4.550000e-85 326.0
21 TraesCS7D01G395900 chr2D 96.410 195 5 2 4068 4262 631194254 631194446 2.120000e-83 320.0
22 TraesCS7D01G395900 chr2D 94.634 205 7 4 4068 4269 414295099 414295302 9.850000e-82 315.0
23 TraesCS7D01G395900 chr2D 92.391 92 6 1 1333 1424 645284998 645284908 3.830000e-26 130.0
24 TraesCS7D01G395900 chr2A 97.143 315 7 2 2129 2441 241962702 241962388 8.980000e-147 531.0
25 TraesCS7D01G395900 chr2A 96.552 319 10 1 2124 2441 597847809 597848127 1.160000e-145 527.0
26 TraesCS7D01G395900 chr1A 96.215 317 12 0 2127 2443 23061659 23061343 1.940000e-143 520.0
27 TraesCS7D01G395900 chr1A 89.116 294 20 6 965 1257 439487851 439488133 5.800000e-94 355.0
28 TraesCS7D01G395900 chr1A 88.095 294 23 6 965 1257 31697498 31697780 5.840000e-89 339.0
29 TraesCS7D01G395900 chr1A 86.411 287 27 6 968 1253 534010618 534010893 2.130000e-78 303.0
30 TraesCS7D01G395900 chr1A 95.349 86 4 0 1172 1257 300591374 300591289 2.290000e-28 137.0
31 TraesCS7D01G395900 chr1A 100.000 28 0 0 1348 1375 31697865 31697892 9.000000e-03 52.8
32 TraesCS7D01G395900 chr1D 89.865 296 16 8 965 1257 418606268 418606552 7.450000e-98 368.0
33 TraesCS7D01G395900 chr1D 95.522 201 5 4 4070 4267 471759268 471759069 7.610000e-83 318.0
34 TraesCS7D01G395900 chr3B 88.660 291 21 6 968 1257 685090310 685090031 1.260000e-90 344.0
35 TraesCS7D01G395900 chr3B 87.415 294 25 6 965 1257 615704215 615703933 1.260000e-85 327.0
36 TraesCS7D01G395900 chr3B 85.789 190 20 5 1071 1257 231189160 231188975 1.340000e-45 195.0
37 TraesCS7D01G395900 chr3B 100.000 28 0 0 1348 1375 615703848 615703821 9.000000e-03 52.8
38 TraesCS7D01G395900 chrUn 96.923 195 4 2 4080 4272 235136221 235136027 4.550000e-85 326.0
39 TraesCS7D01G395900 chrUn 96.923 195 4 2 4080 4272 395778488 395778294 4.550000e-85 326.0
40 TraesCS7D01G395900 chrUn 97.838 185 4 0 4080 4264 183903694 183903878 2.120000e-83 320.0
41 TraesCS7D01G395900 chr2B 87.285 291 25 6 968 1257 632574007 632573728 5.880000e-84 322.0
42 TraesCS7D01G395900 chr2B 100.000 28 0 0 1348 1375 632573643 632573616 9.000000e-03 52.8
43 TraesCS7D01G395900 chr6B 86.735 294 27 6 965 1257 304065384 304065666 2.740000e-82 316.0
44 TraesCS7D01G395900 chr3D 86.552 290 15 6 965 1251 139731434 139731702 9.920000e-77 298.0
45 TraesCS7D01G395900 chr3A 86.614 254 23 4 1004 1257 591695052 591694810 2.160000e-68 270.0
46 TraesCS7D01G395900 chr5B 91.406 128 8 2 1136 1260 5351794 5351667 6.270000e-39 172.0
47 TraesCS7D01G395900 chr5B 90.909 121 7 2 1140 1257 548545864 548545745 4.880000e-35 159.0
48 TraesCS7D01G395900 chr4A 93.878 49 3 0 3164 3212 594988782 594988830 1.820000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G395900 chr7D 510607700 510612413 4713 True 8706.0 8706 100.00000 1 4714 1 chr7D.!!$R1 4713
1 TraesCS7D01G395900 chr7A 581369031 581373234 4203 True 1175.8 3016 92.45040 1 4714 5 chr7A.!!$R1 4713
2 TraesCS7D01G395900 chr7B 539211722 539217266 5544 True 810.5 1683 86.95175 1 3434 4 chr7B.!!$R2 3433


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
404 408 0.839946 CGACCAAGGATCCCCAATCT 59.160 55.0 8.55 0.00 34.56 2.40 F
1478 1569 1.156736 CTTGCCGGACTCGTGATTTT 58.843 50.0 5.05 0.00 33.95 1.82 F
2132 4063 0.618458 TGACCATGGTAACTGAGGCC 59.382 55.0 19.80 2.03 37.61 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1596 1698 0.247185 ATTTTGGCACCAATCTGCGG 59.753 50.0 2.31 0.00 38.12 5.69 R
2415 4346 0.113190 AGGCCTCCTTTGGTTTGGAG 59.887 55.0 0.00 0.00 46.91 3.86 R
3939 6566 0.179048 CTCCAACTGGTGCACACTCA 60.179 55.0 20.43 6.64 36.34 3.41 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 1.885887 TGTGCTTTAACAGGATGCCAC 59.114 47.619 0.00 0.00 42.53 5.01
89 91 1.702401 TGCCACTTTATCAGGGACACA 59.298 47.619 0.00 0.00 0.00 3.72
171 173 8.481492 TGGCATTCAGAATAACAATCCAATAT 57.519 30.769 0.00 0.00 0.00 1.28
193 195 9.965902 AATATCCCTCTAATGATCATAAACCAC 57.034 33.333 9.04 0.00 0.00 4.16
207 209 6.919721 TCATAAACCACTCCAAACAAATAGC 58.080 36.000 0.00 0.00 0.00 2.97
212 214 7.480760 AACCACTCCAAACAAATAGCATAAT 57.519 32.000 0.00 0.00 0.00 1.28
404 408 0.839946 CGACCAAGGATCCCCAATCT 59.160 55.000 8.55 0.00 34.56 2.40
655 659 1.567504 CGTCACAACGTGGAGAAAGT 58.432 50.000 0.00 0.00 43.94 2.66
661 665 2.693591 ACAACGTGGAGAAAGTGAGAGA 59.306 45.455 0.00 0.00 0.00 3.10
662 666 3.243569 ACAACGTGGAGAAAGTGAGAGAG 60.244 47.826 0.00 0.00 0.00 3.20
663 667 1.889829 ACGTGGAGAAAGTGAGAGAGG 59.110 52.381 0.00 0.00 0.00 3.69
921 952 3.785859 GCGGATCCTGGTCCAGCA 61.786 66.667 13.99 0.00 38.21 4.41
922 953 2.503061 CGGATCCTGGTCCAGCAG 59.497 66.667 13.99 0.79 38.21 4.24
923 954 2.191641 GGATCCTGGTCCAGCAGC 59.808 66.667 13.99 0.30 38.20 5.25
927 958 2.194388 ATCCTGGTCCAGCAGCACAG 62.194 60.000 13.99 0.00 0.00 3.66
1110 1145 2.808206 GCCCCATCCACCTCTACGG 61.808 68.421 0.00 0.00 39.35 4.02
1258 1329 1.889530 GACCTCCTACAAGGCACGCT 61.890 60.000 0.00 0.00 40.34 5.07
1260 1331 1.448540 CTCCTACAAGGCACGCTGG 60.449 63.158 0.00 0.00 34.61 4.85
1261 1332 2.172483 CTCCTACAAGGCACGCTGGT 62.172 60.000 0.00 0.00 34.61 4.00
1285 1356 3.688159 CGTTTCCGTCCCCCGTCT 61.688 66.667 0.00 0.00 33.66 4.18
1384 1475 2.678934 AGGCTGCGGAGGTACGAA 60.679 61.111 5.93 0.00 35.47 3.85
1435 1526 3.385384 CAGCTGCAGGACGAGGGA 61.385 66.667 17.12 0.00 0.00 4.20
1478 1569 1.156736 CTTGCCGGACTCGTGATTTT 58.843 50.000 5.05 0.00 33.95 1.82
1484 1582 2.177977 CGGACTCGTGATTTTCTCTCG 58.822 52.381 0.00 0.00 41.14 4.04
1488 1586 2.094649 ACTCGTGATTTTCTCTCGTCCC 60.095 50.000 0.00 0.00 40.73 4.46
1532 1633 4.201832 CGAGCTGTTAGGTGAGTACTACTG 60.202 50.000 0.00 0.00 0.00 2.74
1569 1671 8.700973 TGCCTATTTGATAGATGTGTACTTGTA 58.299 33.333 0.00 0.00 34.77 2.41
1570 1672 9.712305 GCCTATTTGATAGATGTGTACTTGTAT 57.288 33.333 0.00 0.00 34.77 2.29
1582 1684 9.982651 GATGTGTACTTGTATGGTAGTATGAAT 57.017 33.333 0.00 0.00 0.00 2.57
1588 1690 8.158169 ACTTGTATGGTAGTATGAATTGCATG 57.842 34.615 0.00 0.00 37.87 4.06
1599 1701 7.086376 AGTATGAATTGCATGATAAATTCCGC 58.914 34.615 18.53 12.12 40.51 5.54
1602 1704 5.067544 TGAATTGCATGATAAATTCCGCAGA 59.932 36.000 18.53 5.04 40.51 4.26
1603 1705 5.717078 ATTGCATGATAAATTCCGCAGAT 57.283 34.783 0.00 0.00 34.40 2.90
1606 1708 4.232221 GCATGATAAATTCCGCAGATTGG 58.768 43.478 0.00 0.00 0.00 3.16
1657 1759 3.581332 CTGTTAGTACCTTGGTCCTTGGA 59.419 47.826 7.57 0.00 0.00 3.53
1731 1833 3.993736 AGCCGAAAACCAAATGTAAATGC 59.006 39.130 0.00 0.00 0.00 3.56
1856 1959 1.080434 AAGTCGCTGAGGCTCGTTC 60.080 57.895 10.42 0.22 30.46 3.95
2013 3932 2.224769 TGCTGAAGTTTTAGGACCCCAG 60.225 50.000 0.00 0.00 0.00 4.45
2073 3992 8.869897 CAAGTTAAGAATTCGAGCTTGTGTATA 58.130 33.333 21.32 0.00 0.00 1.47
2074 3993 9.601217 AAGTTAAGAATTCGAGCTTGTGTATAT 57.399 29.630 10.31 0.00 0.00 0.86
2075 3994 9.601217 AGTTAAGAATTCGAGCTTGTGTATATT 57.399 29.630 0.00 0.00 0.00 1.28
2076 3995 9.638300 GTTAAGAATTCGAGCTTGTGTATATTG 57.362 33.333 0.00 0.00 0.00 1.90
2077 3996 6.292389 AGAATTCGAGCTTGTGTATATTGC 57.708 37.500 0.00 0.00 0.00 3.56
2122 4053 1.500783 CCCTCCAGGTTGACCATGGT 61.501 60.000 19.89 19.89 38.89 3.55
2125 4056 2.618045 CCTCCAGGTTGACCATGGTAAC 60.618 54.545 19.80 20.14 38.89 2.50
2126 4057 2.305927 CTCCAGGTTGACCATGGTAACT 59.694 50.000 19.80 8.64 38.89 2.24
2127 4058 2.039746 TCCAGGTTGACCATGGTAACTG 59.960 50.000 21.44 21.44 38.89 3.16
2128 4059 2.039746 CCAGGTTGACCATGGTAACTGA 59.960 50.000 27.54 7.49 38.89 3.41
2129 4060 3.338249 CAGGTTGACCATGGTAACTGAG 58.662 50.000 23.28 14.13 38.89 3.35
2130 4061 2.305927 AGGTTGACCATGGTAACTGAGG 59.694 50.000 19.80 0.00 38.89 3.86
2131 4062 2.084546 GTTGACCATGGTAACTGAGGC 58.915 52.381 19.80 2.85 37.61 4.70
2132 4063 0.618458 TGACCATGGTAACTGAGGCC 59.382 55.000 19.80 2.03 37.61 5.19
2133 4064 0.912486 GACCATGGTAACTGAGGCCT 59.088 55.000 19.80 3.86 37.61 5.19
2134 4065 0.912486 ACCATGGTAACTGAGGCCTC 59.088 55.000 26.78 26.78 37.61 4.70
2135 4066 1.207791 CCATGGTAACTGAGGCCTCT 58.792 55.000 32.28 16.00 37.61 3.69
2136 4067 1.561542 CCATGGTAACTGAGGCCTCTT 59.438 52.381 32.28 21.56 37.61 2.85
2137 4068 2.025887 CCATGGTAACTGAGGCCTCTTT 60.026 50.000 32.28 25.38 37.61 2.52
2138 4069 3.562176 CCATGGTAACTGAGGCCTCTTTT 60.562 47.826 32.28 25.05 37.61 2.27
2139 4070 3.140325 TGGTAACTGAGGCCTCTTTTG 57.860 47.619 32.28 20.77 37.61 2.44
2140 4071 2.224769 TGGTAACTGAGGCCTCTTTTGG 60.225 50.000 32.28 18.44 37.61 3.28
2141 4072 2.224793 GGTAACTGAGGCCTCTTTTGGT 60.225 50.000 32.28 19.88 0.00 3.67
2142 4073 2.755952 AACTGAGGCCTCTTTTGGTT 57.244 45.000 32.28 22.84 0.00 3.67
2143 4074 2.278332 ACTGAGGCCTCTTTTGGTTC 57.722 50.000 32.28 5.03 0.00 3.62
2144 4075 1.494721 ACTGAGGCCTCTTTTGGTTCA 59.505 47.619 32.28 9.78 0.00 3.18
2145 4076 2.108952 ACTGAGGCCTCTTTTGGTTCAT 59.891 45.455 32.28 3.95 0.00 2.57
2146 4077 3.330701 ACTGAGGCCTCTTTTGGTTCATA 59.669 43.478 32.28 7.56 0.00 2.15
2147 4078 3.944015 CTGAGGCCTCTTTTGGTTCATAG 59.056 47.826 32.28 13.54 0.00 2.23
2148 4079 3.282885 GAGGCCTCTTTTGGTTCATAGG 58.717 50.000 26.25 0.00 0.00 2.57
2149 4080 2.919602 AGGCCTCTTTTGGTTCATAGGA 59.080 45.455 0.00 0.00 0.00 2.94
2150 4081 3.529319 AGGCCTCTTTTGGTTCATAGGAT 59.471 43.478 0.00 0.00 0.00 3.24
2151 4082 4.726825 AGGCCTCTTTTGGTTCATAGGATA 59.273 41.667 0.00 0.00 0.00 2.59
2152 4083 5.066593 GGCCTCTTTTGGTTCATAGGATAG 58.933 45.833 0.00 0.00 0.00 2.08
2153 4084 5.066593 GCCTCTTTTGGTTCATAGGATAGG 58.933 45.833 0.00 0.00 0.00 2.57
2154 4085 5.163195 GCCTCTTTTGGTTCATAGGATAGGA 60.163 44.000 0.00 0.00 0.00 2.94
2155 4086 6.466470 GCCTCTTTTGGTTCATAGGATAGGAT 60.466 42.308 0.00 0.00 28.27 3.24
2156 4087 7.521669 CCTCTTTTGGTTCATAGGATAGGATT 58.478 38.462 0.00 0.00 28.27 3.01
2157 4088 8.660435 CCTCTTTTGGTTCATAGGATAGGATTA 58.340 37.037 0.00 0.00 28.27 1.75
2160 4091 9.155975 CTTTTGGTTCATAGGATAGGATTATCG 57.844 37.037 0.00 0.00 37.20 2.92
2161 4092 7.792364 TTGGTTCATAGGATAGGATTATCGT 57.208 36.000 0.00 0.00 37.20 3.73
2162 4093 8.888836 TTGGTTCATAGGATAGGATTATCGTA 57.111 34.615 0.00 0.00 39.58 3.43
2163 4094 8.521170 TGGTTCATAGGATAGGATTATCGTAG 57.479 38.462 1.23 0.00 39.00 3.51
2164 4095 7.560262 TGGTTCATAGGATAGGATTATCGTAGG 59.440 40.741 1.23 3.78 39.00 3.18
2165 4096 7.778853 GGTTCATAGGATAGGATTATCGTAGGA 59.221 40.741 7.24 7.24 41.67 2.94
2166 4097 9.186837 GTTCATAGGATAGGATTATCGTAGGAA 57.813 37.037 14.87 14.87 45.40 3.36
2167 4098 9.937876 TTCATAGGATAGGATTATCGTAGGAAT 57.062 33.333 14.87 0.00 44.20 3.01
2171 4102 8.115490 AGGATAGGATTATCGTAGGAATAGGA 57.885 38.462 1.23 0.00 37.20 2.94
2172 4103 8.566979 AGGATAGGATTATCGTAGGAATAGGAA 58.433 37.037 1.23 0.00 37.20 3.36
2173 4104 9.369672 GGATAGGATTATCGTAGGAATAGGAAT 57.630 37.037 1.23 0.00 37.20 3.01
2177 4108 9.726438 AGGATTATCGTAGGAATAGGAATTTTG 57.274 33.333 0.00 0.00 0.00 2.44
2178 4109 9.503399 GGATTATCGTAGGAATAGGAATTTTGT 57.497 33.333 0.00 0.00 0.00 2.83
2181 4112 9.991906 TTATCGTAGGAATAGGAATTTTGTAGG 57.008 33.333 0.00 0.00 0.00 3.18
2182 4113 7.664552 TCGTAGGAATAGGAATTTTGTAGGA 57.335 36.000 0.00 0.00 0.00 2.94
2183 4114 8.081517 TCGTAGGAATAGGAATTTTGTAGGAA 57.918 34.615 0.00 0.00 0.00 3.36
2184 4115 8.542080 TCGTAGGAATAGGAATTTTGTAGGAAA 58.458 33.333 0.00 0.00 0.00 3.13
2185 4116 9.338622 CGTAGGAATAGGAATTTTGTAGGAAAT 57.661 33.333 0.00 0.00 0.00 2.17
2188 4119 9.413734 AGGAATAGGAATTTTGTAGGAAATGAG 57.586 33.333 0.00 0.00 30.06 2.90
2189 4120 9.408648 GGAATAGGAATTTTGTAGGAAATGAGA 57.591 33.333 0.00 0.00 30.06 3.27
2193 4124 8.286191 AGGAATTTTGTAGGAAATGAGATGAC 57.714 34.615 0.00 0.00 30.06 3.06
2194 4125 7.890127 AGGAATTTTGTAGGAAATGAGATGACA 59.110 33.333 0.00 0.00 30.06 3.58
2195 4126 8.689972 GGAATTTTGTAGGAAATGAGATGACAT 58.310 33.333 0.00 0.00 30.06 3.06
2196 4127 9.512435 GAATTTTGTAGGAAATGAGATGACATG 57.488 33.333 0.00 0.00 30.06 3.21
2197 4128 8.585471 ATTTTGTAGGAAATGAGATGACATGT 57.415 30.769 0.00 0.00 0.00 3.21
2198 4129 9.685276 ATTTTGTAGGAAATGAGATGACATGTA 57.315 29.630 0.00 0.00 0.00 2.29
2199 4130 9.685276 TTTTGTAGGAAATGAGATGACATGTAT 57.315 29.630 0.00 0.00 0.00 2.29
2200 4131 8.893219 TTGTAGGAAATGAGATGACATGTATC 57.107 34.615 0.00 2.87 0.00 2.24
2201 4132 8.255111 TGTAGGAAATGAGATGACATGTATCT 57.745 34.615 14.05 14.05 37.59 1.98
2202 4133 8.363390 TGTAGGAAATGAGATGACATGTATCTC 58.637 37.037 24.04 24.04 46.82 2.75
2212 4143 9.368674 GAGATGACATGTATCTCAAATCCTATG 57.631 37.037 24.95 0.00 46.22 2.23
2213 4144 9.097946 AGATGACATGTATCTCAAATCCTATGA 57.902 33.333 0.00 0.00 29.05 2.15
2214 4145 9.368674 GATGACATGTATCTCAAATCCTATGAG 57.631 37.037 0.00 0.00 44.53 2.90
2215 4146 8.255111 TGACATGTATCTCAAATCCTATGAGT 57.745 34.615 0.00 0.00 43.77 3.41
2216 4147 9.367160 TGACATGTATCTCAAATCCTATGAGTA 57.633 33.333 0.00 0.00 43.77 2.59
2217 4148 9.853555 GACATGTATCTCAAATCCTATGAGTAG 57.146 37.037 0.00 0.00 43.77 2.57
2232 4163 5.677319 ATGAGTAGGAATTGGAAACGAGA 57.323 39.130 0.00 0.00 0.00 4.04
2233 4164 5.677319 TGAGTAGGAATTGGAAACGAGAT 57.323 39.130 0.00 0.00 0.00 2.75
2234 4165 5.419542 TGAGTAGGAATTGGAAACGAGATG 58.580 41.667 0.00 0.00 0.00 2.90
2235 4166 5.046591 TGAGTAGGAATTGGAAACGAGATGT 60.047 40.000 0.00 0.00 0.00 3.06
2236 4167 5.420409 AGTAGGAATTGGAAACGAGATGTC 58.580 41.667 0.00 0.00 0.00 3.06
2237 4168 4.286297 AGGAATTGGAAACGAGATGTCA 57.714 40.909 0.00 0.00 0.00 3.58
2238 4169 4.848357 AGGAATTGGAAACGAGATGTCAT 58.152 39.130 0.00 0.00 0.00 3.06
2239 4170 5.256474 AGGAATTGGAAACGAGATGTCATT 58.744 37.500 0.00 0.00 0.00 2.57
2240 4171 5.711976 AGGAATTGGAAACGAGATGTCATTT 59.288 36.000 0.00 0.00 0.00 2.32
2241 4172 5.801947 GGAATTGGAAACGAGATGTCATTTG 59.198 40.000 0.00 0.00 0.00 2.32
2242 4173 4.764679 TTGGAAACGAGATGTCATTTGG 57.235 40.909 0.00 0.00 0.00 3.28
2243 4174 3.750371 TGGAAACGAGATGTCATTTGGT 58.250 40.909 0.00 0.00 0.00 3.67
2244 4175 4.141287 TGGAAACGAGATGTCATTTGGTT 58.859 39.130 0.00 0.00 0.00 3.67
2245 4176 4.215399 TGGAAACGAGATGTCATTTGGTTC 59.785 41.667 4.55 3.92 0.00 3.62
2246 4177 4.215399 GGAAACGAGATGTCATTTGGTTCA 59.785 41.667 4.55 0.00 0.00 3.18
2247 4178 4.749245 AACGAGATGTCATTTGGTTCAC 57.251 40.909 0.00 0.00 0.00 3.18
2248 4179 3.738982 ACGAGATGTCATTTGGTTCACA 58.261 40.909 0.00 0.00 0.00 3.58
2249 4180 3.498397 ACGAGATGTCATTTGGTTCACAC 59.502 43.478 0.00 0.00 0.00 3.82
2250 4181 3.120199 CGAGATGTCATTTGGTTCACACC 60.120 47.826 0.00 0.00 44.56 4.16
2263 4194 5.984233 GGTTCACACCAAAGGAATTTTTC 57.016 39.130 0.00 0.00 43.61 2.29
2264 4195 4.814234 GGTTCACACCAAAGGAATTTTTCC 59.186 41.667 0.00 0.00 45.80 3.13
2265 4196 5.627968 GGTTCACACCAAAGGAATTTTTCCA 60.628 40.000 8.87 0.00 46.88 3.53
2266 4197 6.911529 GGTTCACACCAAAGGAATTTTTCCAT 60.912 38.462 8.87 0.00 46.88 3.41
2267 4198 8.334633 GGTTCACACCAAAGGAATTTTTCCATT 61.335 37.037 8.87 0.31 46.88 3.16
2278 4209 6.765915 GAATTTTTCCATTGAGTCTAGGCT 57.234 37.500 0.00 0.00 0.00 4.58
2279 4210 6.765915 AATTTTTCCATTGAGTCTAGGCTC 57.234 37.500 17.74 17.74 36.12 4.70
2280 4211 4.908601 TTTTCCATTGAGTCTAGGCTCA 57.091 40.909 23.07 23.07 43.03 4.26
2281 4212 5.441718 TTTTCCATTGAGTCTAGGCTCAT 57.558 39.130 26.91 14.39 43.99 2.90
2282 4213 5.441718 TTTCCATTGAGTCTAGGCTCATT 57.558 39.130 26.91 20.33 43.99 2.57
2283 4214 5.441718 TTCCATTGAGTCTAGGCTCATTT 57.558 39.130 26.91 15.12 43.99 2.32
2284 4215 5.441718 TCCATTGAGTCTAGGCTCATTTT 57.558 39.130 26.91 12.69 43.99 1.82
2285 4216 5.819991 TCCATTGAGTCTAGGCTCATTTTT 58.180 37.500 26.91 10.30 43.99 1.94
2286 4217 6.957631 TCCATTGAGTCTAGGCTCATTTTTA 58.042 36.000 26.91 12.75 43.99 1.52
2287 4218 7.577303 TCCATTGAGTCTAGGCTCATTTTTAT 58.423 34.615 26.91 14.49 43.99 1.40
2288 4219 8.055181 TCCATTGAGTCTAGGCTCATTTTTATT 58.945 33.333 26.91 4.66 43.99 1.40
2289 4220 8.689972 CCATTGAGTCTAGGCTCATTTTTATTT 58.310 33.333 26.91 3.37 43.99 1.40
2292 4223 8.281212 TGAGTCTAGGCTCATTTTTATTTTCC 57.719 34.615 23.07 0.00 40.23 3.13
2293 4224 8.109634 TGAGTCTAGGCTCATTTTTATTTTCCT 58.890 33.333 23.07 0.00 40.23 3.36
2294 4225 9.614792 GAGTCTAGGCTCATTTTTATTTTCCTA 57.385 33.333 19.57 0.00 35.67 2.94
2308 4239 9.540538 TTTTATTTTCCTATGAAATGTGGAGGA 57.459 29.630 0.00 0.00 40.08 3.71
2309 4240 9.713684 TTTATTTTCCTATGAAATGTGGAGGAT 57.286 29.630 0.00 0.00 40.08 3.24
2311 4242 8.930846 ATTTTCCTATGAAATGTGGAGGATAG 57.069 34.615 0.00 0.00 40.08 2.08
2312 4243 6.439636 TTCCTATGAAATGTGGAGGATAGG 57.560 41.667 0.00 0.00 36.22 2.57
2313 4244 5.726560 TCCTATGAAATGTGGAGGATAGGA 58.273 41.667 0.00 0.00 39.29 2.94
2314 4245 6.150332 TCCTATGAAATGTGGAGGATAGGAA 58.850 40.000 0.00 0.00 38.86 3.36
2315 4246 6.043243 TCCTATGAAATGTGGAGGATAGGAAC 59.957 42.308 0.00 0.00 38.86 3.62
2316 4247 4.503714 TGAAATGTGGAGGATAGGAACC 57.496 45.455 0.00 0.00 0.00 3.62
2317 4248 3.849574 TGAAATGTGGAGGATAGGAACCA 59.150 43.478 0.00 0.00 0.00 3.67
2318 4249 4.290985 TGAAATGTGGAGGATAGGAACCAA 59.709 41.667 0.00 0.00 34.11 3.67
2319 4250 5.044179 TGAAATGTGGAGGATAGGAACCAAT 60.044 40.000 0.00 0.00 34.11 3.16
2320 4251 4.713792 ATGTGGAGGATAGGAACCAATC 57.286 45.455 0.00 0.00 34.11 2.67
2358 4289 6.396829 GAATCCATTCCTATGAACCAAAGG 57.603 41.667 0.00 0.00 33.37 3.11
2359 4290 4.249638 TCCATTCCTATGAACCAAAGGG 57.750 45.455 0.00 0.00 35.37 3.95
2360 4291 2.695147 CCATTCCTATGAACCAAAGGGC 59.305 50.000 0.00 0.00 33.50 5.19
2361 4292 3.628257 CCATTCCTATGAACCAAAGGGCT 60.628 47.826 0.00 0.00 33.50 5.19
2362 4293 3.366052 TTCCTATGAACCAAAGGGCTC 57.634 47.619 0.00 0.00 37.90 4.70
2363 4294 2.562296 TCCTATGAACCAAAGGGCTCT 58.438 47.619 0.00 0.00 37.90 4.09
2364 4295 3.731431 TCCTATGAACCAAAGGGCTCTA 58.269 45.455 0.00 0.00 37.90 2.43
2365 4296 4.108570 TCCTATGAACCAAAGGGCTCTAA 58.891 43.478 0.00 0.00 37.90 2.10
2366 4297 4.538490 TCCTATGAACCAAAGGGCTCTAAA 59.462 41.667 0.00 0.00 37.90 1.85
2367 4298 4.884164 CCTATGAACCAAAGGGCTCTAAAG 59.116 45.833 0.00 0.00 37.90 1.85
2368 4299 3.154827 TGAACCAAAGGGCTCTAAAGG 57.845 47.619 0.00 0.00 37.90 3.11
2369 4300 2.714250 TGAACCAAAGGGCTCTAAAGGA 59.286 45.455 5.94 0.00 37.90 3.36
2370 4301 3.139397 TGAACCAAAGGGCTCTAAAGGAA 59.861 43.478 5.94 0.00 37.90 3.36
2371 4302 3.895704 ACCAAAGGGCTCTAAAGGAAA 57.104 42.857 5.94 0.00 37.90 3.13
2372 4303 4.193240 ACCAAAGGGCTCTAAAGGAAAA 57.807 40.909 5.94 0.00 37.90 2.29
2373 4304 4.552674 ACCAAAGGGCTCTAAAGGAAAAA 58.447 39.130 5.94 0.00 37.90 1.94
2408 4339 9.713684 AGAATCCTATCCTCTAGAATTCCTATG 57.286 37.037 0.65 0.00 0.00 2.23
2409 4340 9.707957 GAATCCTATCCTCTAGAATTCCTATGA 57.292 37.037 0.65 0.00 0.00 2.15
2410 4341 9.713684 AATCCTATCCTCTAGAATTCCTATGAG 57.286 37.037 0.65 4.96 0.00 2.90
2411 4342 8.469924 TCCTATCCTCTAGAATTCCTATGAGA 57.530 38.462 0.65 0.00 30.71 3.27
2412 4343 9.079239 TCCTATCCTCTAGAATTCCTATGAGAT 57.921 37.037 0.65 1.28 30.71 2.75
2413 4344 9.713684 CCTATCCTCTAGAATTCCTATGAGATT 57.286 37.037 0.65 0.00 30.71 2.40
2415 4346 8.608185 ATCCTCTAGAATTCCTATGAGATTCC 57.392 38.462 0.65 0.00 30.71 3.01
2416 4347 7.774713 TCCTCTAGAATTCCTATGAGATTCCT 58.225 38.462 0.65 0.00 30.71 3.36
2417 4348 7.893302 TCCTCTAGAATTCCTATGAGATTCCTC 59.107 40.741 0.65 0.00 39.86 3.71
2418 4349 7.124147 CCTCTAGAATTCCTATGAGATTCCTCC 59.876 44.444 0.65 0.00 38.66 4.30
2419 4350 7.539292 TCTAGAATTCCTATGAGATTCCTCCA 58.461 38.462 0.65 0.00 38.66 3.86
2420 4351 8.013072 TCTAGAATTCCTATGAGATTCCTCCAA 58.987 37.037 0.65 0.00 38.66 3.53
2421 4352 7.457380 AGAATTCCTATGAGATTCCTCCAAA 57.543 36.000 0.65 0.00 38.66 3.28
2422 4353 7.286313 AGAATTCCTATGAGATTCCTCCAAAC 58.714 38.462 0.65 0.00 38.66 2.93
2423 4354 5.373812 TTCCTATGAGATTCCTCCAAACC 57.626 43.478 0.00 0.00 38.66 3.27
2424 4355 4.370776 TCCTATGAGATTCCTCCAAACCA 58.629 43.478 0.00 0.00 38.66 3.67
2425 4356 4.788075 TCCTATGAGATTCCTCCAAACCAA 59.212 41.667 0.00 0.00 38.66 3.67
2426 4357 5.252863 TCCTATGAGATTCCTCCAAACCAAA 59.747 40.000 0.00 0.00 38.66 3.28
2427 4358 5.591877 CCTATGAGATTCCTCCAAACCAAAG 59.408 44.000 0.00 0.00 38.66 2.77
2428 4359 3.766545 TGAGATTCCTCCAAACCAAAGG 58.233 45.455 0.00 0.00 38.66 3.11
2429 4360 3.397618 TGAGATTCCTCCAAACCAAAGGA 59.602 43.478 0.00 0.00 38.66 3.36
2447 4378 4.341366 AGGAGGCCTGAATTTGTTTTTG 57.659 40.909 12.00 0.00 29.57 2.44
2633 5227 7.987458 TGACAAGTTTCTAGAGTTCTTTGTCAT 59.013 33.333 22.48 3.14 30.18 3.06
2707 5301 5.238432 TGTTGGAAGTTGTAAGCACATACAG 59.762 40.000 0.00 0.00 37.13 2.74
3176 5780 6.873997 AGTATCAGATAATTGACCACGTGAA 58.126 36.000 19.30 3.48 0.00 3.18
3203 5807 6.509418 TGTGGTAAGCAATCCAAACTATTC 57.491 37.500 0.00 0.00 35.38 1.75
3306 5913 7.396540 AAAGTCCAAAGGCATATAACAGAAG 57.603 36.000 0.00 0.00 0.00 2.85
3322 5929 5.461032 ACAGAAGTACAGAAGAACTCCAG 57.539 43.478 0.00 0.00 0.00 3.86
3334 5941 1.764571 AACTCCAGCGTGCCACCTAA 61.765 55.000 0.00 0.00 0.00 2.69
3364 5971 6.142817 CACCAGCACACTTCTAACATTAAAC 58.857 40.000 0.00 0.00 0.00 2.01
3390 5997 3.070018 CACAGAAGCACCCTAAAGACTG 58.930 50.000 0.00 0.00 0.00 3.51
3402 6010 5.833131 ACCCTAAAGACTGCAATTTTCTCAA 59.167 36.000 0.00 0.00 0.00 3.02
3404 6012 7.015584 ACCCTAAAGACTGCAATTTTCTCAATT 59.984 33.333 0.00 0.00 0.00 2.32
3445 6053 9.612066 AAAAGGTTTTGATGATGCTAAAAGAAA 57.388 25.926 0.00 0.00 0.00 2.52
3463 6071 8.942338 AAAAGAAACAAGAGGAATACCAAAAC 57.058 30.769 0.00 0.00 38.94 2.43
3464 6072 7.898014 AAGAAACAAGAGGAATACCAAAACT 57.102 32.000 0.00 0.00 38.94 2.66
3465 6073 7.511959 AGAAACAAGAGGAATACCAAAACTC 57.488 36.000 0.00 0.00 38.94 3.01
3503 6124 2.425143 TTCTTGCCATGACTCATCCC 57.575 50.000 0.00 0.00 0.00 3.85
3510 6131 1.019673 CATGACTCATCCCAAAGCCG 58.980 55.000 0.00 0.00 0.00 5.52
3547 6168 4.877823 TCTCATTACATCCTGAACATGCAC 59.122 41.667 0.00 0.00 0.00 4.57
3551 6172 1.202915 ACATCCTGAACATGCACACCA 60.203 47.619 0.00 0.00 0.00 4.17
3552 6173 1.471287 CATCCTGAACATGCACACCAG 59.529 52.381 0.00 0.00 0.00 4.00
3553 6174 0.473755 TCCTGAACATGCACACCAGT 59.526 50.000 0.00 0.00 0.00 4.00
3630 6251 3.459227 TGTTGGATATCTGCCATCAGGAA 59.541 43.478 2.05 0.00 40.69 3.36
3631 6252 3.777106 TGGATATCTGCCATCAGGAAC 57.223 47.619 2.05 0.00 40.69 3.62
3632 6253 3.321039 TGGATATCTGCCATCAGGAACT 58.679 45.455 2.05 0.00 40.69 3.01
3633 6254 3.326006 TGGATATCTGCCATCAGGAACTC 59.674 47.826 2.05 0.00 40.69 3.01
3634 6255 3.582208 GGATATCTGCCATCAGGAACTCT 59.418 47.826 2.05 0.00 40.69 3.24
3635 6256 4.563168 GGATATCTGCCATCAGGAACTCTG 60.563 50.000 2.05 0.00 44.68 3.35
3636 6257 1.649321 TCTGCCATCAGGAACTCTGT 58.351 50.000 0.00 0.00 43.76 3.41
3637 6258 2.820178 TCTGCCATCAGGAACTCTGTA 58.180 47.619 0.00 0.00 43.76 2.74
3638 6259 2.762887 TCTGCCATCAGGAACTCTGTAG 59.237 50.000 0.00 0.00 43.76 2.74
3639 6260 1.833630 TGCCATCAGGAACTCTGTAGG 59.166 52.381 0.00 0.00 43.76 3.18
3640 6261 2.111384 GCCATCAGGAACTCTGTAGGA 58.889 52.381 9.39 0.00 43.76 2.94
3641 6262 2.102252 GCCATCAGGAACTCTGTAGGAG 59.898 54.545 9.39 0.00 43.76 3.69
3642 6263 4.447424 GCCATCAGGAACTCTGTAGGAGT 61.447 52.174 9.39 0.00 45.67 3.85
3651 6272 3.828875 CTCTGTAGGAGTTCATTCCCC 57.171 52.381 0.00 0.00 38.02 4.81
3652 6273 3.379452 CTCTGTAGGAGTTCATTCCCCT 58.621 50.000 0.00 0.00 38.02 4.79
3653 6274 3.777522 CTCTGTAGGAGTTCATTCCCCTT 59.222 47.826 0.00 0.00 38.02 3.95
3654 6275 4.955335 TCTGTAGGAGTTCATTCCCCTTA 58.045 43.478 0.00 0.00 38.02 2.69
3655 6276 5.538877 TCTGTAGGAGTTCATTCCCCTTAT 58.461 41.667 0.00 0.00 38.02 1.73
3656 6277 5.366768 TCTGTAGGAGTTCATTCCCCTTATG 59.633 44.000 0.00 0.00 38.02 1.90
3657 6278 5.036916 TGTAGGAGTTCATTCCCCTTATGT 58.963 41.667 0.00 0.00 38.02 2.29
3658 6279 4.510167 AGGAGTTCATTCCCCTTATGTG 57.490 45.455 0.00 0.00 38.02 3.21
3659 6280 4.111577 AGGAGTTCATTCCCCTTATGTGA 58.888 43.478 0.00 0.00 38.02 3.58
3660 6281 4.540099 AGGAGTTCATTCCCCTTATGTGAA 59.460 41.667 0.00 0.00 38.02 3.18
3667 6288 5.710099 TCATTCCCCTTATGTGAACTTTGTC 59.290 40.000 0.00 0.00 0.00 3.18
3674 6295 5.238650 CCTTATGTGAACTTTGTCGGAGTTT 59.761 40.000 0.00 0.00 37.46 2.66
3692 6313 8.679100 TCGGAGTTTATTCTTCTTTTGAACAAA 58.321 29.630 0.00 0.00 34.31 2.83
3693 6314 9.296400 CGGAGTTTATTCTTCTTTTGAACAAAA 57.704 29.630 11.35 11.35 37.90 2.44
3731 6353 4.425577 GAAGAATTCGCCATGTTGAACT 57.574 40.909 0.00 0.00 34.17 3.01
3750 6372 3.193263 ACTGACTGCTATTCATTCTGCG 58.807 45.455 0.00 0.00 30.11 5.18
3759 6381 4.908156 GCTATTCATTCTGCGTATTTGCTG 59.092 41.667 0.00 0.00 35.36 4.41
3779 6401 0.815213 TCGCATAGCCCAAGCACATC 60.815 55.000 0.00 0.00 43.56 3.06
3807 6429 6.978343 TGGATTTGAACCAACTACTATTCG 57.022 37.500 0.00 0.00 34.25 3.34
3859 6485 0.108138 TCTAGCGGCTCAAAGCTTCC 60.108 55.000 5.39 0.00 44.15 3.46
3860 6486 1.424493 CTAGCGGCTCAAAGCTTCCG 61.424 60.000 17.50 17.50 44.15 4.30
3865 6491 0.321653 GGCTCAAAGCTTCCGGAGAA 60.322 55.000 20.61 0.00 41.99 2.87
3876 6502 2.507992 CGGAGAAGTGCGCCTCTG 60.508 66.667 4.18 5.28 33.76 3.35
3908 6534 4.035208 GGTCGTTTTGTGAACATGAAGAGT 59.965 41.667 0.00 0.00 0.00 3.24
3924 6551 7.394641 ACATGAAGAGTTATTTTTCTTCCCCTC 59.605 37.037 0.00 0.00 45.50 4.30
3925 6552 6.246163 TGAAGAGTTATTTTTCTTCCCCTCC 58.754 40.000 10.66 0.00 45.50 4.30
3927 6554 6.470456 AGAGTTATTTTTCTTCCCCTCCTT 57.530 37.500 0.00 0.00 0.00 3.36
3933 6560 6.575244 ATTTTTCTTCCCCTCCTTTTTGTT 57.425 33.333 0.00 0.00 0.00 2.83
3936 6563 3.562182 TCTTCCCCTCCTTTTTGTTGAC 58.438 45.455 0.00 0.00 0.00 3.18
3939 6566 3.922375 TCCCCTCCTTTTTGTTGACAAT 58.078 40.909 0.00 0.00 35.55 2.71
3958 6585 0.179048 TGAGTGTGCACCAGTTGGAG 60.179 55.000 15.69 0.00 38.94 3.86
3960 6587 2.203337 TGTGCACCAGTTGGAGGC 60.203 61.111 15.69 8.66 38.94 4.70
4009 6636 1.207329 GTAAGATTCGGACCCTGCTGT 59.793 52.381 0.00 0.00 0.00 4.40
4017 6644 1.620822 GGACCCTGCTGTGTGAAAAT 58.379 50.000 0.00 0.00 0.00 1.82
4018 6645 1.963515 GGACCCTGCTGTGTGAAAATT 59.036 47.619 0.00 0.00 0.00 1.82
4022 6649 3.642848 ACCCTGCTGTGTGAAAATTGATT 59.357 39.130 0.00 0.00 0.00 2.57
4026 6653 5.630680 CCTGCTGTGTGAAAATTGATTGTAC 59.369 40.000 0.00 0.00 0.00 2.90
4040 6667 8.908786 AATTGATTGTACCTGTATGAGTATGG 57.091 34.615 0.00 0.00 0.00 2.74
4041 6668 7.669089 TTGATTGTACCTGTATGAGTATGGA 57.331 36.000 0.00 0.00 0.00 3.41
4043 6670 8.950007 TGATTGTACCTGTATGAGTATGGATA 57.050 34.615 0.00 0.00 0.00 2.59
4045 6672 8.958060 ATTGTACCTGTATGAGTATGGATAGT 57.042 34.615 0.00 0.00 0.00 2.12
4046 6673 8.777578 TTGTACCTGTATGAGTATGGATAGTT 57.222 34.615 0.00 0.00 0.00 2.24
4047 6674 9.871175 TTGTACCTGTATGAGTATGGATAGTTA 57.129 33.333 0.00 0.00 0.00 2.24
4050 6677 8.282455 ACCTGTATGAGTATGGATAGTTATCG 57.718 38.462 0.00 0.00 33.52 2.92
4051 6678 7.339721 ACCTGTATGAGTATGGATAGTTATCGG 59.660 40.741 0.00 0.00 33.52 4.18
4052 6679 7.556635 CCTGTATGAGTATGGATAGTTATCGGA 59.443 40.741 0.00 0.00 33.52 4.55
4053 6680 8.873186 TGTATGAGTATGGATAGTTATCGGAA 57.127 34.615 0.00 0.00 33.52 4.30
4054 6681 9.304335 TGTATGAGTATGGATAGTTATCGGAAA 57.696 33.333 0.00 0.00 33.52 3.13
4055 6682 9.570488 GTATGAGTATGGATAGTTATCGGAAAC 57.430 37.037 0.00 0.00 33.52 2.78
4056 6683 6.989659 TGAGTATGGATAGTTATCGGAAACC 58.010 40.000 0.00 0.00 33.52 3.27
4068 6695 1.520787 GGAAACCGATCGCGTCCAT 60.521 57.895 19.31 0.00 32.29 3.41
4069 6696 1.636340 GAAACCGATCGCGTCCATG 59.364 57.895 10.32 0.00 35.23 3.66
4070 6697 0.804544 GAAACCGATCGCGTCCATGA 60.805 55.000 10.32 0.00 35.23 3.07
4071 6698 0.179084 AAACCGATCGCGTCCATGAT 60.179 50.000 10.32 0.00 35.23 2.45
4072 6699 0.179084 AACCGATCGCGTCCATGATT 60.179 50.000 10.32 0.00 35.23 2.57
4073 6700 0.179084 ACCGATCGCGTCCATGATTT 60.179 50.000 10.32 0.00 35.23 2.17
4074 6701 1.067974 ACCGATCGCGTCCATGATTTA 59.932 47.619 10.32 0.00 35.23 1.40
4075 6702 2.288825 ACCGATCGCGTCCATGATTTAT 60.289 45.455 10.32 0.00 35.23 1.40
4076 6703 2.345641 CCGATCGCGTCCATGATTTATC 59.654 50.000 10.32 0.00 35.23 1.75
4077 6704 2.986479 CGATCGCGTCCATGATTTATCA 59.014 45.455 5.77 0.00 41.70 2.15
4078 6705 5.440400 CCGATCGCGTCCATGATTTATCAT 61.440 45.833 10.32 0.00 41.08 2.45
4079 6706 4.798387 CGATCGCGTCCATGATTTATCATA 59.202 41.667 5.77 0.00 45.23 2.15
4080 6707 5.275927 CGATCGCGTCCATGATTTATCATAC 60.276 44.000 5.77 1.21 45.23 2.39
4081 6708 4.877282 TCGCGTCCATGATTTATCATACA 58.123 39.130 5.77 0.00 45.23 2.29
4082 6709 4.923281 TCGCGTCCATGATTTATCATACAG 59.077 41.667 5.77 0.00 45.23 2.74
4083 6710 4.686091 CGCGTCCATGATTTATCATACAGT 59.314 41.667 0.00 0.00 45.23 3.55
4084 6711 5.177511 CGCGTCCATGATTTATCATACAGTT 59.822 40.000 0.00 0.00 45.23 3.16
4085 6712 6.292865 CGCGTCCATGATTTATCATACAGTTT 60.293 38.462 0.00 0.00 45.23 2.66
4086 6713 7.417612 GCGTCCATGATTTATCATACAGTTTT 58.582 34.615 4.97 0.00 45.23 2.43
4087 6714 7.376866 GCGTCCATGATTTATCATACAGTTTTG 59.623 37.037 4.97 0.00 45.23 2.44
4088 6715 7.376866 CGTCCATGATTTATCATACAGTTTTGC 59.623 37.037 4.97 0.00 45.23 3.68
4089 6716 8.408601 GTCCATGATTTATCATACAGTTTTGCT 58.591 33.333 4.97 0.00 45.23 3.91
4090 6717 9.625747 TCCATGATTTATCATACAGTTTTGCTA 57.374 29.630 4.97 0.00 45.23 3.49
4091 6718 9.888878 CCATGATTTATCATACAGTTTTGCTAG 57.111 33.333 4.97 0.00 45.23 3.42
4092 6719 9.888878 CATGATTTATCATACAGTTTTGCTAGG 57.111 33.333 4.97 0.00 45.23 3.02
4093 6720 9.632638 ATGATTTATCATACAGTTTTGCTAGGT 57.367 29.630 3.44 0.00 45.17 3.08
4094 6721 9.109393 TGATTTATCATACAGTTTTGCTAGGTC 57.891 33.333 0.00 0.00 0.00 3.85
4095 6722 9.331282 GATTTATCATACAGTTTTGCTAGGTCT 57.669 33.333 0.00 0.00 0.00 3.85
4096 6723 8.718102 TTTATCATACAGTTTTGCTAGGTCTC 57.282 34.615 0.00 0.00 0.00 3.36
4097 6724 5.738619 TCATACAGTTTTGCTAGGTCTCA 57.261 39.130 0.00 0.00 0.00 3.27
4098 6725 5.724328 TCATACAGTTTTGCTAGGTCTCAG 58.276 41.667 0.00 0.00 0.00 3.35
4099 6726 5.246203 TCATACAGTTTTGCTAGGTCTCAGT 59.754 40.000 0.00 0.00 0.00 3.41
4100 6727 3.996480 ACAGTTTTGCTAGGTCTCAGTC 58.004 45.455 0.00 0.00 0.00 3.51
4101 6728 2.989840 CAGTTTTGCTAGGTCTCAGTCG 59.010 50.000 0.00 0.00 0.00 4.18
4102 6729 2.891580 AGTTTTGCTAGGTCTCAGTCGA 59.108 45.455 0.00 0.00 0.00 4.20
4103 6730 2.987821 GTTTTGCTAGGTCTCAGTCGAC 59.012 50.000 7.70 7.70 0.00 4.20
4104 6731 2.201921 TTGCTAGGTCTCAGTCGACT 57.798 50.000 13.58 13.58 34.38 4.18
4105 6732 2.201921 TGCTAGGTCTCAGTCGACTT 57.798 50.000 17.26 2.43 34.38 3.01
4106 6733 3.345508 TGCTAGGTCTCAGTCGACTTA 57.654 47.619 17.26 7.41 34.38 2.24
4107 6734 3.271729 TGCTAGGTCTCAGTCGACTTAG 58.728 50.000 17.26 18.13 42.91 2.18
4108 6735 3.055312 TGCTAGGTCTCAGTCGACTTAGA 60.055 47.826 22.49 22.49 42.76 2.10
4109 6736 3.310501 GCTAGGTCTCAGTCGACTTAGAC 59.689 52.174 35.91 35.91 42.76 2.59
4121 6748 5.867166 GTCGACTTAGACTTCGTTATGTCT 58.133 41.667 8.70 0.00 44.56 3.41
4122 6749 5.958949 GTCGACTTAGACTTCGTTATGTCTC 59.041 44.000 8.70 0.00 41.92 3.36
4123 6750 5.640783 TCGACTTAGACTTCGTTATGTCTCA 59.359 40.000 0.00 0.00 41.92 3.27
4124 6751 5.960683 CGACTTAGACTTCGTTATGTCTCAG 59.039 44.000 0.00 0.00 41.92 3.35
4125 6752 6.402334 CGACTTAGACTTCGTTATGTCTCAGT 60.402 42.308 8.97 8.97 45.06 3.41
4126 6753 6.844254 ACTTAGACTTCGTTATGTCTCAGTC 58.156 40.000 0.00 0.00 41.23 3.51
4127 6754 4.343811 AGACTTCGTTATGTCTCAGTCG 57.656 45.455 0.00 0.00 39.04 4.18
4128 6755 4.001652 AGACTTCGTTATGTCTCAGTCGA 58.998 43.478 0.00 0.00 39.04 4.20
4129 6756 4.636648 AGACTTCGTTATGTCTCAGTCGAT 59.363 41.667 0.00 0.00 39.04 3.59
4130 6757 4.663166 ACTTCGTTATGTCTCAGTCGATG 58.337 43.478 0.00 0.00 0.00 3.84
4131 6758 4.156190 ACTTCGTTATGTCTCAGTCGATGT 59.844 41.667 0.00 0.00 33.39 3.06
4132 6759 4.696899 TCGTTATGTCTCAGTCGATGTT 57.303 40.909 0.00 0.00 0.00 2.71
4133 6760 5.806366 TCGTTATGTCTCAGTCGATGTTA 57.194 39.130 0.00 0.00 0.00 2.41
4134 6761 6.373186 TCGTTATGTCTCAGTCGATGTTAT 57.627 37.500 0.00 0.00 0.00 1.89
4135 6762 7.486802 TCGTTATGTCTCAGTCGATGTTATA 57.513 36.000 0.00 0.00 0.00 0.98
4136 6763 8.095937 TCGTTATGTCTCAGTCGATGTTATAT 57.904 34.615 0.00 0.00 0.00 0.86
4137 6764 8.565416 TCGTTATGTCTCAGTCGATGTTATATT 58.435 33.333 0.00 0.00 0.00 1.28
4138 6765 8.841822 CGTTATGTCTCAGTCGATGTTATATTC 58.158 37.037 0.00 0.00 0.00 1.75
4139 6766 9.130312 GTTATGTCTCAGTCGATGTTATATTCC 57.870 37.037 0.00 0.00 0.00 3.01
4140 6767 6.709018 TGTCTCAGTCGATGTTATATTCCA 57.291 37.500 0.00 0.00 0.00 3.53
4141 6768 7.290110 TGTCTCAGTCGATGTTATATTCCAT 57.710 36.000 0.00 0.00 0.00 3.41
4142 6769 7.726216 TGTCTCAGTCGATGTTATATTCCATT 58.274 34.615 0.00 0.00 0.00 3.16
4143 6770 7.653311 TGTCTCAGTCGATGTTATATTCCATTG 59.347 37.037 0.00 0.00 0.00 2.82
4144 6771 7.867909 GTCTCAGTCGATGTTATATTCCATTGA 59.132 37.037 0.00 1.84 0.00 2.57
4145 6772 8.588472 TCTCAGTCGATGTTATATTCCATTGAT 58.412 33.333 0.00 0.00 34.76 2.57
4146 6773 8.763049 TCAGTCGATGTTATATTCCATTGATC 57.237 34.615 0.00 0.00 34.76 2.92
4147 6774 8.588472 TCAGTCGATGTTATATTCCATTGATCT 58.412 33.333 0.00 5.12 34.76 2.75
4148 6775 9.212641 CAGTCGATGTTATATTCCATTGATCTT 57.787 33.333 0.00 0.00 34.76 2.40
4149 6776 9.212641 AGTCGATGTTATATTCCATTGATCTTG 57.787 33.333 0.00 0.00 34.76 3.02
4150 6777 7.959651 GTCGATGTTATATTCCATTGATCTTGC 59.040 37.037 0.00 0.00 34.76 4.01
4151 6778 7.661027 TCGATGTTATATTCCATTGATCTTGCA 59.339 33.333 0.00 0.00 0.00 4.08
4152 6779 8.456471 CGATGTTATATTCCATTGATCTTGCAT 58.544 33.333 0.00 0.00 0.00 3.96
4171 6798 9.906660 TCTTGCATTAAGATTCGTACAAAAATT 57.093 25.926 0.00 0.00 40.43 1.82
4243 6870 4.240175 ACTTGGTTAAGTCTCAGTCGAC 57.760 45.455 7.70 7.70 43.53 4.20
4244 6871 3.890147 ACTTGGTTAAGTCTCAGTCGACT 59.110 43.478 13.58 13.58 43.53 4.18
4245 6872 3.917329 TGGTTAAGTCTCAGTCGACTG 57.083 47.619 34.76 34.76 43.14 3.51
4246 6873 6.438740 ACTTGGTTAAGTCTCAGTCGACTGA 61.439 44.000 38.24 38.24 45.53 3.41
4247 6874 7.855881 ACTTGGTTAAGTCTCAGTCGACTGAA 61.856 42.308 39.25 28.85 45.14 3.02
4248 6875 9.242291 ACTTGGTTAAGTCTCAGTCGACTGAAA 62.242 40.741 39.25 29.90 45.14 2.69
4256 6883 3.917329 CAGTCGACTGAAACCTAGACA 57.083 47.619 36.73 0.00 46.59 3.41
4257 6884 3.566523 CAGTCGACTGAAACCTAGACAC 58.433 50.000 36.73 0.00 46.59 3.67
4258 6885 3.004419 CAGTCGACTGAAACCTAGACACA 59.996 47.826 36.73 0.00 46.59 3.72
4259 6886 3.004524 AGTCGACTGAAACCTAGACACAC 59.995 47.826 19.30 0.00 0.00 3.82
4260 6887 2.295349 TCGACTGAAACCTAGACACACC 59.705 50.000 0.00 0.00 0.00 4.16
4261 6888 2.609737 CGACTGAAACCTAGACACACCC 60.610 54.545 0.00 0.00 0.00 4.61
4262 6889 2.633481 GACTGAAACCTAGACACACCCT 59.367 50.000 0.00 0.00 0.00 4.34
4263 6890 3.046374 ACTGAAACCTAGACACACCCTT 58.954 45.455 0.00 0.00 0.00 3.95
4264 6891 3.458487 ACTGAAACCTAGACACACCCTTT 59.542 43.478 0.00 0.00 0.00 3.11
4265 6892 4.657039 ACTGAAACCTAGACACACCCTTTA 59.343 41.667 0.00 0.00 0.00 1.85
4266 6893 5.309806 ACTGAAACCTAGACACACCCTTTAT 59.690 40.000 0.00 0.00 0.00 1.40
4267 6894 5.801380 TGAAACCTAGACACACCCTTTATC 58.199 41.667 0.00 0.00 0.00 1.75
4268 6895 5.308497 TGAAACCTAGACACACCCTTTATCA 59.692 40.000 0.00 0.00 0.00 2.15
4269 6896 6.012858 TGAAACCTAGACACACCCTTTATCAT 60.013 38.462 0.00 0.00 0.00 2.45
4270 6897 7.181305 TGAAACCTAGACACACCCTTTATCATA 59.819 37.037 0.00 0.00 0.00 2.15
4271 6898 6.481434 ACCTAGACACACCCTTTATCATAC 57.519 41.667 0.00 0.00 0.00 2.39
4272 6899 6.203072 ACCTAGACACACCCTTTATCATACT 58.797 40.000 0.00 0.00 0.00 2.12
4273 6900 7.359849 ACCTAGACACACCCTTTATCATACTA 58.640 38.462 0.00 0.00 0.00 1.82
4274 6901 8.011290 ACCTAGACACACCCTTTATCATACTAT 58.989 37.037 0.00 0.00 0.00 2.12
4275 6902 9.529823 CCTAGACACACCCTTTATCATACTATA 57.470 37.037 0.00 0.00 0.00 1.31
4278 6905 9.601810 AGACACACCCTTTATCATACTATATCA 57.398 33.333 0.00 0.00 0.00 2.15
4279 6906 9.640963 GACACACCCTTTATCATACTATATCAC 57.359 37.037 0.00 0.00 0.00 3.06
4280 6907 9.381038 ACACACCCTTTATCATACTATATCACT 57.619 33.333 0.00 0.00 0.00 3.41
4300 6927 3.315470 ACTTTCCAAAAGCGTTTCCTCTC 59.685 43.478 0.00 0.00 0.00 3.20
4320 6947 2.736995 TGCTCGTTTTCTCCCGCG 60.737 61.111 0.00 0.00 0.00 6.46
4357 6984 1.037493 TATAAGATCCACGCGGCACT 58.963 50.000 12.47 0.00 0.00 4.40
4439 7067 3.052082 CTGCCAACAGTGCCTCCG 61.052 66.667 0.00 0.00 39.22 4.63
4456 7084 1.381872 CGTCCCCTGGAGATGGAGT 60.382 63.158 0.00 0.00 29.39 3.85
4498 7126 0.798776 CCACCGAAACATCTGCTCAC 59.201 55.000 0.00 0.00 0.00 3.51
4499 7127 1.609061 CCACCGAAACATCTGCTCACT 60.609 52.381 0.00 0.00 0.00 3.41
4501 7129 1.344438 ACCGAAACATCTGCTCACTGA 59.656 47.619 0.00 0.00 0.00 3.41
4502 7130 1.728971 CCGAAACATCTGCTCACTGAC 59.271 52.381 0.00 0.00 0.00 3.51
4503 7131 1.388093 CGAAACATCTGCTCACTGACG 59.612 52.381 0.00 0.00 0.00 4.35
4504 7132 2.677199 GAAACATCTGCTCACTGACGA 58.323 47.619 0.00 0.00 0.00 4.20
4505 7133 2.820059 AACATCTGCTCACTGACGAA 57.180 45.000 0.00 0.00 0.00 3.85
4506 7134 2.071688 ACATCTGCTCACTGACGAAC 57.928 50.000 0.00 0.00 0.00 3.95
4508 7136 0.109086 ATCTGCTCACTGACGAACCG 60.109 55.000 0.00 0.00 0.00 4.44
4509 7137 1.170290 TCTGCTCACTGACGAACCGA 61.170 55.000 0.00 0.00 0.00 4.69
4510 7138 0.109086 CTGCTCACTGACGAACCGAT 60.109 55.000 0.00 0.00 0.00 4.18
4514 7148 0.109272 TCACTGACGAACCGATGCTC 60.109 55.000 0.00 0.00 0.00 4.26
4591 7225 2.507547 GTGCGACGGCGATAACCA 60.508 61.111 18.90 0.00 44.10 3.67
4594 7228 2.960129 CGACGGCGATAACCAGGC 60.960 66.667 16.62 0.00 40.82 4.85
4595 7229 2.588034 GACGGCGATAACCAGGCC 60.588 66.667 16.62 0.00 43.42 5.19
4598 7232 3.857038 GGCGATAACCAGGCCGGA 61.857 66.667 18.74 0.00 37.06 5.14
4599 7233 2.188469 GCGATAACCAGGCCGGAA 59.812 61.111 18.74 7.94 38.63 4.30
4613 7247 4.388499 GGAAAGCGCCGTCCTCCA 62.388 66.667 17.58 0.00 0.00 3.86
4711 7371 1.067295 AGTTGTGCCTCCCAGATGAA 58.933 50.000 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 6.013725 TCACTCACTTTGCCTTAATTCCTAGA 60.014 38.462 0.00 0.00 0.00 2.43
74 75 5.766150 TTGTGTTTGTGTCCCTGATAAAG 57.234 39.130 0.00 0.00 0.00 1.85
89 91 6.815089 TGATTGCCTGATTAGTTTTGTGTTT 58.185 32.000 0.00 0.00 0.00 2.83
171 173 6.043243 GGAGTGGTTTATGATCATTAGAGGGA 59.957 42.308 14.65 0.00 0.00 4.20
188 190 6.909550 TTATGCTATTTGTTTGGAGTGGTT 57.090 33.333 0.00 0.00 0.00 3.67
237 239 6.497259 TCCTGGAGTTCACTTTGATAGTAGTT 59.503 38.462 0.00 0.00 34.56 2.24
239 241 6.153680 ACTCCTGGAGTTCACTTTGATAGTAG 59.846 42.308 23.49 0.00 40.28 2.57
240 242 6.017192 ACTCCTGGAGTTCACTTTGATAGTA 58.983 40.000 23.49 0.00 40.28 1.82
245 247 2.485479 GCACTCCTGGAGTTCACTTTGA 60.485 50.000 26.37 0.00 41.37 2.69
404 408 0.735471 CAGGTCTTCGATCGAGCAGA 59.265 55.000 18.54 16.08 0.00 4.26
644 648 1.403514 GCCTCTCTCACTTTCTCCACG 60.404 57.143 0.00 0.00 0.00 4.94
646 650 2.015456 TGCCTCTCTCACTTTCTCCA 57.985 50.000 0.00 0.00 0.00 3.86
655 659 1.908299 TGGACGCTTGCCTCTCTCA 60.908 57.895 0.00 0.00 0.00 3.27
661 665 2.372040 TTACACGTGGACGCTTGCCT 62.372 55.000 21.57 0.00 44.43 4.75
662 666 1.957186 TTACACGTGGACGCTTGCC 60.957 57.895 21.57 0.00 44.43 4.52
663 667 1.203313 GTTACACGTGGACGCTTGC 59.797 57.895 21.57 0.00 44.43 4.01
840 866 4.115279 CTGGACGCCAGCACATAG 57.885 61.111 12.01 0.00 45.13 2.23
921 952 4.052518 GGCCCATGGACCTGTGCT 62.053 66.667 15.22 0.00 0.00 4.40
923 954 4.802051 CCGGCCCATGGACCTGTG 62.802 72.222 15.91 0.00 0.00 3.66
1129 1200 0.674895 GGCGCCATTTCTCACTGACT 60.675 55.000 24.80 0.00 0.00 3.41
1285 1356 2.481795 GCAAATCGCGGTAGGTAGGTTA 60.482 50.000 6.13 0.00 0.00 2.85
1478 1569 1.682684 GGAGCAAGGGGACGAGAGA 60.683 63.158 0.00 0.00 0.00 3.10
1484 1582 4.475135 GAGCCGGAGCAAGGGGAC 62.475 72.222 5.05 0.00 43.56 4.46
1532 1633 4.351874 TCAAATAGGCATGGTAGCTACC 57.648 45.455 32.37 32.37 46.62 3.18
1571 1673 9.846248 GGAATTTATCATGCAATTCATACTACC 57.154 33.333 18.69 4.94 40.00 3.18
1574 1676 7.086376 GCGGAATTTATCATGCAATTCATACT 58.914 34.615 18.69 0.00 40.00 2.12
1582 1684 5.283294 CAATCTGCGGAATTTATCATGCAA 58.717 37.500 0.00 0.00 39.51 4.08
1588 1690 3.550842 GGCACCAATCTGCGGAATTTATC 60.551 47.826 0.00 0.00 38.12 1.75
1596 1698 0.247185 ATTTTGGCACCAATCTGCGG 59.753 50.000 2.31 0.00 38.12 5.69
1599 1701 4.491676 CTCTGAATTTTGGCACCAATCTG 58.508 43.478 2.31 2.94 35.70 2.90
1602 1704 2.901839 AGCTCTGAATTTTGGCACCAAT 59.098 40.909 2.31 0.00 35.70 3.16
1603 1705 2.036217 CAGCTCTGAATTTTGGCACCAA 59.964 45.455 0.00 0.00 0.00 3.67
1606 1708 3.375782 AACAGCTCTGAATTTTGGCAC 57.624 42.857 3.60 0.00 0.00 5.01
1657 1759 3.939592 GCTAAAGCTTAAATCCGGACAGT 59.060 43.478 6.12 0.00 38.21 3.55
1731 1833 2.598632 GGTAGCAAGGCATAGCGCG 61.599 63.158 0.00 0.00 43.84 6.86
1856 1959 9.303537 GACACTAGTAGATTAAGCCAAACTTAG 57.696 37.037 3.59 0.00 41.83 2.18
2042 3961 6.473397 AGCTCGAATTCTTAACTTGAACAG 57.527 37.500 3.52 0.00 0.00 3.16
2073 3992 6.347696 TGACAATTTTCAGTTTTCCAGCAAT 58.652 32.000 0.00 0.00 0.00 3.56
2074 3993 5.728471 TGACAATTTTCAGTTTTCCAGCAA 58.272 33.333 0.00 0.00 0.00 3.91
2075 3994 5.126869 TCTGACAATTTTCAGTTTTCCAGCA 59.873 36.000 18.65 0.00 43.19 4.41
2076 3995 5.591099 TCTGACAATTTTCAGTTTTCCAGC 58.409 37.500 18.65 0.00 43.19 4.85
2077 3996 7.260603 AGTTCTGACAATTTTCAGTTTTCCAG 58.739 34.615 18.65 0.00 43.19 3.86
2122 4053 3.137544 TGAACCAAAAGAGGCCTCAGTTA 59.862 43.478 33.90 9.31 0.00 2.24
2125 4056 2.276732 TGAACCAAAAGAGGCCTCAG 57.723 50.000 33.90 19.47 0.00 3.35
2126 4057 2.978156 ATGAACCAAAAGAGGCCTCA 57.022 45.000 33.90 11.83 0.00 3.86
2127 4058 3.054361 TCCTATGAACCAAAAGAGGCCTC 60.054 47.826 26.22 26.22 0.00 4.70
2128 4059 2.919602 TCCTATGAACCAAAAGAGGCCT 59.080 45.455 3.86 3.86 0.00 5.19
2129 4060 3.366052 TCCTATGAACCAAAAGAGGCC 57.634 47.619 0.00 0.00 0.00 5.19
2130 4061 5.066593 CCTATCCTATGAACCAAAAGAGGC 58.933 45.833 0.00 0.00 0.00 4.70
2131 4062 6.500589 TCCTATCCTATGAACCAAAAGAGG 57.499 41.667 0.00 0.00 0.00 3.69
2134 4065 9.155975 CGATAATCCTATCCTATGAACCAAAAG 57.844 37.037 0.00 0.00 31.68 2.27
2135 4066 8.656806 ACGATAATCCTATCCTATGAACCAAAA 58.343 33.333 0.00 0.00 31.68 2.44
2136 4067 8.202461 ACGATAATCCTATCCTATGAACCAAA 57.798 34.615 0.00 0.00 31.68 3.28
2137 4068 7.792364 ACGATAATCCTATCCTATGAACCAA 57.208 36.000 0.00 0.00 31.68 3.67
2138 4069 7.560262 CCTACGATAATCCTATCCTATGAACCA 59.440 40.741 0.00 0.00 31.68 3.67
2139 4070 7.778853 TCCTACGATAATCCTATCCTATGAACC 59.221 40.741 0.00 0.00 31.68 3.62
2140 4071 8.749026 TCCTACGATAATCCTATCCTATGAAC 57.251 38.462 0.00 0.00 31.68 3.18
2141 4072 9.937876 ATTCCTACGATAATCCTATCCTATGAA 57.062 33.333 0.00 0.00 31.68 2.57
2145 4076 9.234086 TCCTATTCCTACGATAATCCTATCCTA 57.766 37.037 0.00 0.00 31.68 2.94
2146 4077 8.115490 TCCTATTCCTACGATAATCCTATCCT 57.885 38.462 0.00 0.00 31.68 3.24
2147 4078 8.763984 TTCCTATTCCTACGATAATCCTATCC 57.236 38.462 0.00 0.00 31.68 2.59
2151 4082 9.726438 CAAAATTCCTATTCCTACGATAATCCT 57.274 33.333 0.00 0.00 0.00 3.24
2152 4083 9.503399 ACAAAATTCCTATTCCTACGATAATCC 57.497 33.333 0.00 0.00 0.00 3.01
2155 4086 9.991906 CCTACAAAATTCCTATTCCTACGATAA 57.008 33.333 0.00 0.00 0.00 1.75
2156 4087 9.370930 TCCTACAAAATTCCTATTCCTACGATA 57.629 33.333 0.00 0.00 0.00 2.92
2157 4088 8.258850 TCCTACAAAATTCCTATTCCTACGAT 57.741 34.615 0.00 0.00 0.00 3.73
2158 4089 7.664552 TCCTACAAAATTCCTATTCCTACGA 57.335 36.000 0.00 0.00 0.00 3.43
2159 4090 8.726870 TTTCCTACAAAATTCCTATTCCTACG 57.273 34.615 0.00 0.00 0.00 3.51
2162 4093 9.413734 CTCATTTCCTACAAAATTCCTATTCCT 57.586 33.333 0.00 0.00 0.00 3.36
2163 4094 9.408648 TCTCATTTCCTACAAAATTCCTATTCC 57.591 33.333 0.00 0.00 0.00 3.01
2167 4098 9.396022 GTCATCTCATTTCCTACAAAATTCCTA 57.604 33.333 0.00 0.00 0.00 2.94
2168 4099 7.890127 TGTCATCTCATTTCCTACAAAATTCCT 59.110 33.333 0.00 0.00 0.00 3.36
2169 4100 8.055279 TGTCATCTCATTTCCTACAAAATTCC 57.945 34.615 0.00 0.00 0.00 3.01
2170 4101 9.512435 CATGTCATCTCATTTCCTACAAAATTC 57.488 33.333 0.00 0.00 0.00 2.17
2171 4102 9.028284 ACATGTCATCTCATTTCCTACAAAATT 57.972 29.630 0.00 0.00 0.00 1.82
2172 4103 8.585471 ACATGTCATCTCATTTCCTACAAAAT 57.415 30.769 0.00 0.00 0.00 1.82
2173 4104 9.685276 ATACATGTCATCTCATTTCCTACAAAA 57.315 29.630 0.00 0.00 0.00 2.44
2174 4105 9.330063 GATACATGTCATCTCATTTCCTACAAA 57.670 33.333 0.00 0.00 0.00 2.83
2175 4106 8.708378 AGATACATGTCATCTCATTTCCTACAA 58.292 33.333 0.00 0.00 0.00 2.41
2176 4107 8.255111 AGATACATGTCATCTCATTTCCTACA 57.745 34.615 0.00 0.00 0.00 2.74
2177 4108 8.755696 GAGATACATGTCATCTCATTTCCTAC 57.244 38.462 24.95 8.46 45.17 3.18
2186 4117 9.368674 CATAGGATTTGAGATACATGTCATCTC 57.631 37.037 24.04 24.04 45.76 2.75
2187 4118 9.097946 TCATAGGATTTGAGATACATGTCATCT 57.902 33.333 0.00 9.42 35.43 2.90
2188 4119 9.368674 CTCATAGGATTTGAGATACATGTCATC 57.631 37.037 0.00 4.47 42.63 2.92
2189 4120 8.878211 ACTCATAGGATTTGAGATACATGTCAT 58.122 33.333 0.00 0.00 42.63 3.06
2190 4121 8.255111 ACTCATAGGATTTGAGATACATGTCA 57.745 34.615 0.00 0.00 42.63 3.58
2191 4122 9.853555 CTACTCATAGGATTTGAGATACATGTC 57.146 37.037 0.00 0.00 42.63 3.06
2208 4139 6.806751 TCTCGTTTCCAATTCCTACTCATAG 58.193 40.000 0.00 0.00 0.00 2.23
2209 4140 6.785337 TCTCGTTTCCAATTCCTACTCATA 57.215 37.500 0.00 0.00 0.00 2.15
2210 4141 5.677319 TCTCGTTTCCAATTCCTACTCAT 57.323 39.130 0.00 0.00 0.00 2.90
2211 4142 5.046591 ACATCTCGTTTCCAATTCCTACTCA 60.047 40.000 0.00 0.00 0.00 3.41
2212 4143 5.420409 ACATCTCGTTTCCAATTCCTACTC 58.580 41.667 0.00 0.00 0.00 2.59
2213 4144 5.046591 TGACATCTCGTTTCCAATTCCTACT 60.047 40.000 0.00 0.00 0.00 2.57
2214 4145 5.175859 TGACATCTCGTTTCCAATTCCTAC 58.824 41.667 0.00 0.00 0.00 3.18
2215 4146 5.414789 TGACATCTCGTTTCCAATTCCTA 57.585 39.130 0.00 0.00 0.00 2.94
2216 4147 4.286297 TGACATCTCGTTTCCAATTCCT 57.714 40.909 0.00 0.00 0.00 3.36
2217 4148 5.567138 AATGACATCTCGTTTCCAATTCC 57.433 39.130 0.00 0.00 0.00 3.01
2218 4149 5.801947 CCAAATGACATCTCGTTTCCAATTC 59.198 40.000 0.00 0.00 33.97 2.17
2219 4150 5.243730 ACCAAATGACATCTCGTTTCCAATT 59.756 36.000 0.00 0.00 33.97 2.32
2220 4151 4.766891 ACCAAATGACATCTCGTTTCCAAT 59.233 37.500 0.00 0.00 33.97 3.16
2221 4152 4.141287 ACCAAATGACATCTCGTTTCCAA 58.859 39.130 0.00 0.00 33.97 3.53
2222 4153 3.750371 ACCAAATGACATCTCGTTTCCA 58.250 40.909 0.00 0.00 33.97 3.53
2223 4154 4.215399 TGAACCAAATGACATCTCGTTTCC 59.785 41.667 0.00 0.00 33.97 3.13
2224 4155 5.147162 GTGAACCAAATGACATCTCGTTTC 58.853 41.667 0.00 0.00 33.97 2.78
2225 4156 4.578516 TGTGAACCAAATGACATCTCGTTT 59.421 37.500 0.00 0.00 36.24 3.60
2226 4157 4.024048 GTGTGAACCAAATGACATCTCGTT 60.024 41.667 0.00 0.00 0.00 3.85
2227 4158 3.498397 GTGTGAACCAAATGACATCTCGT 59.502 43.478 0.00 0.00 0.00 4.18
2228 4159 3.120199 GGTGTGAACCAAATGACATCTCG 60.120 47.826 0.00 0.00 0.00 4.04
2229 4160 3.820467 TGGTGTGAACCAAATGACATCTC 59.180 43.478 0.00 0.00 36.74 2.75
2230 4161 3.831323 TGGTGTGAACCAAATGACATCT 58.169 40.909 0.00 0.00 36.74 2.90
2231 4162 4.582701 TTGGTGTGAACCAAATGACATC 57.417 40.909 7.85 0.00 45.79 3.06
2239 4170 5.428184 AAAATTCCTTTGGTGTGAACCAA 57.572 34.783 6.23 6.23 46.95 3.67
2240 4171 5.423886 GAAAAATTCCTTTGGTGTGAACCA 58.576 37.500 0.00 0.00 38.14 3.67
2241 4172 4.814234 GGAAAAATTCCTTTGGTGTGAACC 59.186 41.667 1.86 0.00 46.57 3.62
2242 4173 5.984233 GGAAAAATTCCTTTGGTGTGAAC 57.016 39.130 1.86 0.00 46.57 3.18
2253 4184 8.285329 GAGCCTAGACTCAATGGAAAAATTCCT 61.285 40.741 10.28 0.00 42.21 3.36
2254 4185 6.183360 GAGCCTAGACTCAATGGAAAAATTCC 60.183 42.308 0.51 2.12 42.14 3.01
2255 4186 6.375455 TGAGCCTAGACTCAATGGAAAAATTC 59.625 38.462 6.25 0.00 43.59 2.17
2256 4187 6.248433 TGAGCCTAGACTCAATGGAAAAATT 58.752 36.000 6.25 0.00 43.59 1.82
2257 4188 5.819991 TGAGCCTAGACTCAATGGAAAAAT 58.180 37.500 6.25 0.00 43.59 1.82
2258 4189 5.241403 TGAGCCTAGACTCAATGGAAAAA 57.759 39.130 6.25 0.00 43.59 1.94
2259 4190 4.908601 TGAGCCTAGACTCAATGGAAAA 57.091 40.909 6.25 0.00 43.59 2.29
2268 4199 8.512966 AGGAAAATAAAAATGAGCCTAGACTC 57.487 34.615 0.00 0.00 37.19 3.36
2282 4213 9.540538 TCCTCCACATTTCATAGGAAAATAAAA 57.459 29.630 6.65 0.00 45.52 1.52
2283 4214 9.713684 ATCCTCCACATTTCATAGGAAAATAAA 57.286 29.630 6.65 0.00 45.52 1.40
2286 4217 7.946776 CCTATCCTCCACATTTCATAGGAAAAT 59.053 37.037 6.65 0.00 45.52 1.82
2287 4218 7.128728 TCCTATCCTCCACATTTCATAGGAAAA 59.871 37.037 6.65 0.00 45.52 2.29
2288 4219 6.619437 TCCTATCCTCCACATTTCATAGGAAA 59.381 38.462 4.85 4.85 46.36 3.13
2289 4220 6.150332 TCCTATCCTCCACATTTCATAGGAA 58.850 40.000 3.47 0.00 39.17 3.36
2290 4221 5.726560 TCCTATCCTCCACATTTCATAGGA 58.273 41.667 2.01 2.01 39.61 2.94
2291 4222 6.234177 GTTCCTATCCTCCACATTTCATAGG 58.766 44.000 0.00 0.00 35.93 2.57
2292 4223 6.183361 TGGTTCCTATCCTCCACATTTCATAG 60.183 42.308 0.00 0.00 0.00 2.23
2293 4224 5.669904 TGGTTCCTATCCTCCACATTTCATA 59.330 40.000 0.00 0.00 0.00 2.15
2294 4225 4.478317 TGGTTCCTATCCTCCACATTTCAT 59.522 41.667 0.00 0.00 0.00 2.57
2295 4226 3.849574 TGGTTCCTATCCTCCACATTTCA 59.150 43.478 0.00 0.00 0.00 2.69
2296 4227 4.503714 TGGTTCCTATCCTCCACATTTC 57.496 45.455 0.00 0.00 0.00 2.17
2297 4228 4.946160 TTGGTTCCTATCCTCCACATTT 57.054 40.909 0.00 0.00 0.00 2.32
2298 4229 4.141158 GGATTGGTTCCTATCCTCCACATT 60.141 45.833 19.71 0.00 41.78 2.71
2299 4230 3.395941 GGATTGGTTCCTATCCTCCACAT 59.604 47.826 19.71 0.00 41.78 3.21
2300 4231 2.777692 GGATTGGTTCCTATCCTCCACA 59.222 50.000 19.71 0.00 41.78 4.17
2301 4232 3.493767 GGATTGGTTCCTATCCTCCAC 57.506 52.381 19.71 0.00 41.78 4.02
2335 4266 5.302823 CCCTTTGGTTCATAGGAATGGATTC 59.697 44.000 6.07 0.00 35.14 2.52
2336 4267 5.211201 CCCTTTGGTTCATAGGAATGGATT 58.789 41.667 6.07 0.00 35.14 3.01
2337 4268 4.808042 CCCTTTGGTTCATAGGAATGGAT 58.192 43.478 6.07 0.00 35.14 3.41
2338 4269 3.627237 GCCCTTTGGTTCATAGGAATGGA 60.627 47.826 6.07 0.00 35.14 3.41
2339 4270 2.695147 GCCCTTTGGTTCATAGGAATGG 59.305 50.000 6.07 0.00 35.14 3.16
2340 4271 3.633986 GAGCCCTTTGGTTCATAGGAATG 59.366 47.826 6.07 0.00 41.28 2.67
2341 4272 3.529319 AGAGCCCTTTGGTTCATAGGAAT 59.471 43.478 6.07 0.00 43.89 3.01
2342 4273 2.919602 AGAGCCCTTTGGTTCATAGGAA 59.080 45.455 6.07 0.00 43.89 3.36
2343 4274 2.562296 AGAGCCCTTTGGTTCATAGGA 58.438 47.619 6.07 0.00 43.89 2.94
2344 4275 4.503714 TTAGAGCCCTTTGGTTCATAGG 57.496 45.455 0.00 0.00 43.89 2.57
2345 4276 4.884164 CCTTTAGAGCCCTTTGGTTCATAG 59.116 45.833 0.00 0.00 43.89 2.23
2346 4277 4.538490 TCCTTTAGAGCCCTTTGGTTCATA 59.462 41.667 0.00 0.00 43.89 2.15
2347 4278 3.333680 TCCTTTAGAGCCCTTTGGTTCAT 59.666 43.478 0.00 0.00 43.89 2.57
2348 4279 2.714250 TCCTTTAGAGCCCTTTGGTTCA 59.286 45.455 0.00 0.00 43.89 3.18
2349 4280 3.434940 TCCTTTAGAGCCCTTTGGTTC 57.565 47.619 0.00 0.00 41.91 3.62
2350 4281 3.895704 TTCCTTTAGAGCCCTTTGGTT 57.104 42.857 0.00 0.00 0.00 3.67
2351 4282 3.895704 TTTCCTTTAGAGCCCTTTGGT 57.104 42.857 0.00 0.00 0.00 3.67
2382 4313 9.713684 CATAGGAATTCTAGAGGATAGGATTCT 57.286 37.037 13.16 5.20 38.80 2.40
2383 4314 9.707957 TCATAGGAATTCTAGAGGATAGGATTC 57.292 37.037 5.23 7.20 38.32 2.52
2384 4315 9.713684 CTCATAGGAATTCTAGAGGATAGGATT 57.286 37.037 5.23 0.00 0.00 3.01
2385 4316 9.079239 TCTCATAGGAATTCTAGAGGATAGGAT 57.921 37.037 5.23 0.00 30.80 3.24
2386 4317 8.469924 TCTCATAGGAATTCTAGAGGATAGGA 57.530 38.462 5.23 0.00 30.80 2.94
2387 4318 9.713684 AATCTCATAGGAATTCTAGAGGATAGG 57.286 37.037 5.23 0.00 30.80 2.57
2389 4320 9.707957 GGAATCTCATAGGAATTCTAGAGGATA 57.292 37.037 5.23 0.00 30.80 2.59
2390 4321 8.409029 AGGAATCTCATAGGAATTCTAGAGGAT 58.591 37.037 5.23 0.86 30.80 3.24
2391 4322 7.774713 AGGAATCTCATAGGAATTCTAGAGGA 58.225 38.462 5.23 0.00 30.80 3.71
2392 4323 7.124147 GGAGGAATCTCATAGGAATTCTAGAGG 59.876 44.444 5.23 0.00 41.69 3.69
2393 4324 7.673504 TGGAGGAATCTCATAGGAATTCTAGAG 59.326 40.741 5.23 7.80 41.69 2.43
2394 4325 7.539292 TGGAGGAATCTCATAGGAATTCTAGA 58.461 38.462 5.23 0.00 41.69 2.43
2395 4326 7.789202 TGGAGGAATCTCATAGGAATTCTAG 57.211 40.000 5.23 0.00 41.69 2.43
2396 4327 8.432805 GTTTGGAGGAATCTCATAGGAATTCTA 58.567 37.037 5.23 0.00 41.69 2.10
2397 4328 7.286313 GTTTGGAGGAATCTCATAGGAATTCT 58.714 38.462 5.23 0.00 41.69 2.40
2398 4329 6.488344 GGTTTGGAGGAATCTCATAGGAATTC 59.512 42.308 0.00 0.00 41.69 2.17
2399 4330 6.068853 TGGTTTGGAGGAATCTCATAGGAATT 60.069 38.462 0.00 0.00 41.69 2.17
2400 4331 5.433051 TGGTTTGGAGGAATCTCATAGGAAT 59.567 40.000 0.00 0.00 41.69 3.01
2401 4332 4.788075 TGGTTTGGAGGAATCTCATAGGAA 59.212 41.667 0.00 0.00 41.69 3.36
2402 4333 4.370776 TGGTTTGGAGGAATCTCATAGGA 58.629 43.478 0.00 0.00 41.69 2.94
2403 4334 4.778213 TGGTTTGGAGGAATCTCATAGG 57.222 45.455 0.00 0.00 41.69 2.57
2404 4335 5.591877 CCTTTGGTTTGGAGGAATCTCATAG 59.408 44.000 0.00 0.00 41.69 2.23
2405 4336 5.252863 TCCTTTGGTTTGGAGGAATCTCATA 59.747 40.000 0.00 0.00 41.69 2.15
2406 4337 4.044571 TCCTTTGGTTTGGAGGAATCTCAT 59.955 41.667 0.00 0.00 41.69 2.90
2407 4338 3.397618 TCCTTTGGTTTGGAGGAATCTCA 59.602 43.478 0.00 0.00 41.69 3.27
2408 4339 4.013050 CTCCTTTGGTTTGGAGGAATCTC 58.987 47.826 0.00 0.00 44.44 2.75
2409 4340 4.039603 CTCCTTTGGTTTGGAGGAATCT 57.960 45.455 0.00 0.00 44.44 2.40
2415 4346 0.113190 AGGCCTCCTTTGGTTTGGAG 59.887 55.000 0.00 0.00 46.91 3.86
2416 4347 0.178964 CAGGCCTCCTTTGGTTTGGA 60.179 55.000 0.00 0.00 0.00 3.53
2417 4348 0.178964 TCAGGCCTCCTTTGGTTTGG 60.179 55.000 0.00 0.00 0.00 3.28
2418 4349 1.703411 TTCAGGCCTCCTTTGGTTTG 58.297 50.000 0.00 0.00 0.00 2.93
2419 4350 2.702270 ATTCAGGCCTCCTTTGGTTT 57.298 45.000 0.00 0.00 0.00 3.27
2420 4351 2.634453 CAAATTCAGGCCTCCTTTGGTT 59.366 45.455 17.67 0.13 0.00 3.67
2421 4352 2.250924 CAAATTCAGGCCTCCTTTGGT 58.749 47.619 17.67 0.00 0.00 3.67
2422 4353 2.250924 ACAAATTCAGGCCTCCTTTGG 58.749 47.619 24.47 11.58 0.00 3.28
2423 4354 4.341366 AAACAAATTCAGGCCTCCTTTG 57.659 40.909 21.39 21.39 0.00 2.77
2424 4355 5.104569 TCAAAAACAAATTCAGGCCTCCTTT 60.105 36.000 0.00 0.00 0.00 3.11
2425 4356 4.408596 TCAAAAACAAATTCAGGCCTCCTT 59.591 37.500 0.00 0.00 0.00 3.36
2426 4357 3.966665 TCAAAAACAAATTCAGGCCTCCT 59.033 39.130 0.00 0.00 0.00 3.69
2427 4358 4.335400 TCAAAAACAAATTCAGGCCTCC 57.665 40.909 0.00 0.00 0.00 4.30
2428 4359 5.759763 ACATTCAAAAACAAATTCAGGCCTC 59.240 36.000 0.00 0.00 0.00 4.70
2429 4360 5.528320 CACATTCAAAAACAAATTCAGGCCT 59.472 36.000 0.00 0.00 0.00 5.19
2430 4361 5.526846 TCACATTCAAAAACAAATTCAGGCC 59.473 36.000 0.00 0.00 0.00 5.19
2431 4362 6.421405 GTCACATTCAAAAACAAATTCAGGC 58.579 36.000 0.00 0.00 0.00 4.85
2432 4363 6.538021 TGGTCACATTCAAAAACAAATTCAGG 59.462 34.615 0.00 0.00 0.00 3.86
2447 4378 2.028112 TGCAGTACCTCTGGTCACATTC 60.028 50.000 0.00 0.00 43.78 2.67
2507 4438 2.977914 GCTGACAGCTTGAGATAACCA 58.022 47.619 20.41 0.00 38.45 3.67
2605 4544 8.738645 ACAAAGAACTCTAGAAACTTGTCATT 57.261 30.769 0.00 0.00 0.00 2.57
2620 4559 5.947228 TTGGATGTCATGACAAAGAACTC 57.053 39.130 31.00 21.57 45.41 3.01
2633 5227 5.825532 TCCAGATAACCAAATTGGATGTCA 58.174 37.500 20.25 0.00 40.96 3.58
2679 5273 4.461081 TGTGCTTACAACTTCCAACAAACT 59.539 37.500 0.00 0.00 0.00 2.66
2863 5460 8.637986 ACCATGAAAAAGCTTATGTAGTTTGAA 58.362 29.630 0.00 0.00 0.00 2.69
3012 5609 0.676151 GAAAGTGCAGGAGCCAGGAG 60.676 60.000 0.00 0.00 41.13 3.69
3176 5780 4.588528 AGTTTGGATTGCTTACCACATGTT 59.411 37.500 0.00 0.00 35.81 2.71
3237 5841 4.580167 TGTTGCATCTACAATAGCCAATCC 59.420 41.667 0.00 0.00 0.00 3.01
3285 5892 6.821665 TGTACTTCTGTTATATGCCTTTGGAC 59.178 38.462 0.00 0.00 0.00 4.02
3306 5913 2.329379 CACGCTGGAGTTCTTCTGTAC 58.671 52.381 0.00 0.00 0.00 2.90
3322 5929 0.179084 TGCTCTATTAGGTGGCACGC 60.179 55.000 12.17 7.23 38.67 5.34
3334 5941 1.905215 AGAAGTGTGCTGGTGCTCTAT 59.095 47.619 0.00 0.00 40.48 1.98
3442 6050 7.511959 AGAGTTTTGGTATTCCTCTTGTTTC 57.488 36.000 0.00 0.00 34.23 2.78
3445 6053 7.229506 CAGAAAGAGTTTTGGTATTCCTCTTGT 59.770 37.037 0.00 0.00 40.59 3.16
3463 6071 9.125906 CAAGAAATATTGCTGAAACAGAAAGAG 57.874 33.333 0.00 0.00 31.92 2.85
3503 6124 1.359848 AAGCTATCACGTCGGCTTTG 58.640 50.000 0.00 0.00 41.44 2.77
3510 6131 6.887376 TGTAATGAGAAAAGCTATCACGTC 57.113 37.500 0.00 0.00 0.00 4.34
3547 6168 7.233389 AGTGGATTATGCTATACTACTGGTG 57.767 40.000 0.00 0.00 0.00 4.17
3632 6253 3.491766 AGGGGAATGAACTCCTACAGA 57.508 47.619 0.00 0.00 39.23 3.41
3633 6254 5.131142 ACATAAGGGGAATGAACTCCTACAG 59.869 44.000 0.00 0.00 40.25 2.74
3634 6255 5.036916 ACATAAGGGGAATGAACTCCTACA 58.963 41.667 0.00 0.00 40.25 2.74
3635 6256 5.130477 TCACATAAGGGGAATGAACTCCTAC 59.870 44.000 0.00 0.00 40.25 3.18
3636 6257 5.285401 TCACATAAGGGGAATGAACTCCTA 58.715 41.667 0.00 0.00 40.25 2.94
3637 6258 4.111577 TCACATAAGGGGAATGAACTCCT 58.888 43.478 0.00 0.00 43.41 3.69
3638 6259 4.503714 TCACATAAGGGGAATGAACTCC 57.496 45.455 0.00 0.00 34.41 3.85
3639 6260 5.819825 GTTCACATAAGGGGAATGAACTC 57.180 43.478 7.90 0.00 43.68 3.01
3641 6262 6.015434 ACAAAGTTCACATAAGGGGAATGAAC 60.015 38.462 7.21 7.21 46.12 3.18
3642 6263 6.074648 ACAAAGTTCACATAAGGGGAATGAA 58.925 36.000 0.00 0.00 0.00 2.57
3643 6264 5.640147 ACAAAGTTCACATAAGGGGAATGA 58.360 37.500 0.00 0.00 0.00 2.57
3644 6265 5.391950 CGACAAAGTTCACATAAGGGGAATG 60.392 44.000 0.00 0.00 0.00 2.67
3645 6266 4.700213 CGACAAAGTTCACATAAGGGGAAT 59.300 41.667 0.00 0.00 0.00 3.01
3646 6267 4.069304 CGACAAAGTTCACATAAGGGGAA 58.931 43.478 0.00 0.00 0.00 3.97
3647 6268 3.558321 CCGACAAAGTTCACATAAGGGGA 60.558 47.826 0.00 0.00 0.00 4.81
3648 6269 2.747446 CCGACAAAGTTCACATAAGGGG 59.253 50.000 0.00 0.00 0.00 4.79
3649 6270 3.670625 TCCGACAAAGTTCACATAAGGG 58.329 45.455 0.00 0.00 0.00 3.95
3650 6271 4.315803 ACTCCGACAAAGTTCACATAAGG 58.684 43.478 0.00 0.00 0.00 2.69
3651 6272 5.924475 AACTCCGACAAAGTTCACATAAG 57.076 39.130 0.00 0.00 31.36 1.73
3652 6273 7.972832 ATAAACTCCGACAAAGTTCACATAA 57.027 32.000 0.00 0.00 35.96 1.90
3653 6274 7.876068 AGAATAAACTCCGACAAAGTTCACATA 59.124 33.333 0.00 0.00 35.96 2.29
3654 6275 6.710744 AGAATAAACTCCGACAAAGTTCACAT 59.289 34.615 0.00 0.00 35.96 3.21
3655 6276 6.053005 AGAATAAACTCCGACAAAGTTCACA 58.947 36.000 0.00 0.00 35.96 3.58
3656 6277 6.541111 AGAATAAACTCCGACAAAGTTCAC 57.459 37.500 0.00 0.00 35.96 3.18
3657 6278 6.990349 AGAAGAATAAACTCCGACAAAGTTCA 59.010 34.615 0.00 0.00 35.96 3.18
3658 6279 7.422878 AGAAGAATAAACTCCGACAAAGTTC 57.577 36.000 0.00 0.00 35.96 3.01
3659 6280 7.803279 AAGAAGAATAAACTCCGACAAAGTT 57.197 32.000 0.00 0.00 38.59 2.66
3660 6281 7.803279 AAAGAAGAATAAACTCCGACAAAGT 57.197 32.000 0.00 0.00 0.00 2.66
3667 6288 8.850454 TTTGTTCAAAAGAAGAATAAACTCCG 57.150 30.769 0.00 0.00 33.21 4.63
3693 6314 8.504005 CGAATTCTTCCACAAGTACTACAAAAT 58.496 33.333 3.52 0.00 0.00 1.82
3696 6317 5.407387 GCGAATTCTTCCACAAGTACTACAA 59.593 40.000 3.52 0.00 0.00 2.41
3701 6323 3.071479 TGGCGAATTCTTCCACAAGTAC 58.929 45.455 11.01 0.00 0.00 2.73
3707 6329 2.487762 TCAACATGGCGAATTCTTCCAC 59.512 45.455 15.68 0.00 31.94 4.02
3731 6353 3.251479 ACGCAGAATGAATAGCAGTCA 57.749 42.857 0.00 0.00 43.75 3.41
3759 6381 1.097547 ATGTGCTTGGGCTATGCGAC 61.098 55.000 4.36 4.77 39.59 5.19
3803 6425 8.771766 CAGATAGACATGAATGAATGAACGAAT 58.228 33.333 0.00 0.00 0.00 3.34
3807 6429 7.226128 TCTGCAGATAGACATGAATGAATGAAC 59.774 37.037 13.74 0.00 0.00 3.18
3827 6453 2.478134 GCCGCTAGATTATGTTCTGCAG 59.522 50.000 7.63 7.63 0.00 4.41
3859 6485 2.507992 CAGAGGCGCACTTCTCCG 60.508 66.667 10.83 0.00 0.00 4.63
3860 6486 2.125350 CCAGAGGCGCACTTCTCC 60.125 66.667 10.83 0.00 0.00 3.71
3876 6502 0.940991 ACAAAACGACCGTAGACGCC 60.941 55.000 0.00 0.00 38.18 5.68
3884 6510 3.001838 TCTTCATGTTCACAAAACGACCG 59.998 43.478 0.00 0.00 0.00 4.79
3908 6534 7.684317 ACAAAAAGGAGGGGAAGAAAAATAA 57.316 32.000 0.00 0.00 0.00 1.40
3924 6551 4.268405 GCACACTCATTGTCAACAAAAAGG 59.732 41.667 0.00 0.00 39.55 3.11
3925 6552 4.863689 TGCACACTCATTGTCAACAAAAAG 59.136 37.500 0.00 3.50 39.55 2.27
3927 6554 4.172505 GTGCACACTCATTGTCAACAAAA 58.827 39.130 13.17 0.00 39.55 2.44
3933 6560 1.134128 ACTGGTGCACACTCATTGTCA 60.134 47.619 20.43 2.73 35.67 3.58
3936 6563 1.001048 CCAACTGGTGCACACTCATTG 60.001 52.381 20.43 14.07 0.00 2.82
3939 6566 0.179048 CTCCAACTGGTGCACACTCA 60.179 55.000 20.43 6.64 36.34 3.41
3960 6587 2.344950 CAGAGTTGCAGTTAGGCTCAG 58.655 52.381 0.00 0.00 34.04 3.35
4009 6636 8.628630 TCATACAGGTACAATCAATTTTCACA 57.371 30.769 0.00 0.00 0.00 3.58
4017 6644 7.669089 TCCATACTCATACAGGTACAATCAA 57.331 36.000 0.00 0.00 0.00 2.57
4018 6645 7.855784 ATCCATACTCATACAGGTACAATCA 57.144 36.000 0.00 0.00 0.00 2.57
4026 6653 7.556635 TCCGATAACTATCCATACTCATACAGG 59.443 40.741 0.00 0.00 0.00 4.00
4050 6677 1.520787 ATGGACGCGATCGGTTTCC 60.521 57.895 15.93 8.10 40.69 3.13
4051 6678 0.804544 TCATGGACGCGATCGGTTTC 60.805 55.000 15.93 9.82 40.69 2.78
4052 6679 0.179084 ATCATGGACGCGATCGGTTT 60.179 50.000 15.93 0.00 40.69 3.27
4053 6680 0.179084 AATCATGGACGCGATCGGTT 60.179 50.000 15.93 0.00 40.69 4.44
4054 6681 0.179084 AAATCATGGACGCGATCGGT 60.179 50.000 15.93 12.97 40.69 4.69
4055 6682 1.778334 TAAATCATGGACGCGATCGG 58.222 50.000 15.93 9.59 40.69 4.18
4056 6683 2.986479 TGATAAATCATGGACGCGATCG 59.014 45.455 15.93 11.69 42.43 3.69
4057 6684 5.576774 TGTATGATAAATCATGGACGCGATC 59.423 40.000 15.93 6.63 46.34 3.69
4058 6685 5.478407 TGTATGATAAATCATGGACGCGAT 58.522 37.500 15.93 0.00 46.34 4.58
4060 6687 4.686091 ACTGTATGATAAATCATGGACGCG 59.314 41.667 14.37 3.53 46.34 6.01
4061 6688 6.545504 AACTGTATGATAAATCATGGACGC 57.454 37.500 14.37 2.48 46.34 5.19
4062 6689 7.376866 GCAAAACTGTATGATAAATCATGGACG 59.623 37.037 14.37 6.13 46.34 4.79
4063 6690 8.408601 AGCAAAACTGTATGATAAATCATGGAC 58.591 33.333 14.37 7.17 46.34 4.02
4065 6692 9.888878 CTAGCAAAACTGTATGATAAATCATGG 57.111 33.333 14.37 7.84 46.34 3.66
4066 6693 9.888878 CCTAGCAAAACTGTATGATAAATCATG 57.111 33.333 14.37 2.29 46.34 3.07
4068 6695 9.109393 GACCTAGCAAAACTGTATGATAAATCA 57.891 33.333 0.00 0.00 41.70 2.57
4069 6696 9.331282 AGACCTAGCAAAACTGTATGATAAATC 57.669 33.333 0.00 0.00 0.00 2.17
4070 6697 9.331282 GAGACCTAGCAAAACTGTATGATAAAT 57.669 33.333 0.00 0.00 0.00 1.40
4071 6698 8.318412 TGAGACCTAGCAAAACTGTATGATAAA 58.682 33.333 0.00 0.00 0.00 1.40
4072 6699 7.847096 TGAGACCTAGCAAAACTGTATGATAA 58.153 34.615 0.00 0.00 0.00 1.75
4073 6700 7.124298 ACTGAGACCTAGCAAAACTGTATGATA 59.876 37.037 0.00 0.00 0.00 2.15
4074 6701 6.070538 ACTGAGACCTAGCAAAACTGTATGAT 60.071 38.462 0.00 0.00 0.00 2.45
4075 6702 5.246203 ACTGAGACCTAGCAAAACTGTATGA 59.754 40.000 0.00 0.00 0.00 2.15
4076 6703 5.482908 ACTGAGACCTAGCAAAACTGTATG 58.517 41.667 0.00 0.00 0.00 2.39
4077 6704 5.622460 CGACTGAGACCTAGCAAAACTGTAT 60.622 44.000 0.00 0.00 0.00 2.29
4078 6705 4.321008 CGACTGAGACCTAGCAAAACTGTA 60.321 45.833 0.00 0.00 0.00 2.74
4079 6706 3.553096 CGACTGAGACCTAGCAAAACTGT 60.553 47.826 0.00 0.00 0.00 3.55
4080 6707 2.989840 CGACTGAGACCTAGCAAAACTG 59.010 50.000 0.00 0.00 0.00 3.16
4081 6708 2.891580 TCGACTGAGACCTAGCAAAACT 59.108 45.455 0.00 0.00 0.00 2.66
4082 6709 2.987821 GTCGACTGAGACCTAGCAAAAC 59.012 50.000 8.70 0.00 35.22 2.43
4083 6710 2.891580 AGTCGACTGAGACCTAGCAAAA 59.108 45.455 19.30 0.00 41.83 2.44
4084 6711 2.515854 AGTCGACTGAGACCTAGCAAA 58.484 47.619 19.30 0.00 41.83 3.68
4085 6712 2.201921 AGTCGACTGAGACCTAGCAA 57.798 50.000 19.30 0.00 41.83 3.91
4086 6713 2.201921 AAGTCGACTGAGACCTAGCA 57.798 50.000 20.85 0.00 41.83 3.49
4087 6714 3.310501 GTCTAAGTCGACTGAGACCTAGC 59.689 52.174 37.98 21.77 45.01 3.42
4093 6720 3.661944 ACGAAGTCTAAGTCGACTGAGA 58.338 45.455 26.12 26.12 43.14 3.27
4094 6721 4.407496 AACGAAGTCTAAGTCGACTGAG 57.593 45.455 22.32 22.32 45.00 3.35
4095 6722 5.410746 ACATAACGAAGTCTAAGTCGACTGA 59.589 40.000 20.85 11.31 45.00 3.41
4096 6723 5.629097 ACATAACGAAGTCTAAGTCGACTG 58.371 41.667 20.85 7.79 45.00 3.51
4097 6724 5.642919 AGACATAACGAAGTCTAAGTCGACT 59.357 40.000 13.58 13.58 45.00 4.18
4098 6725 5.867166 AGACATAACGAAGTCTAAGTCGAC 58.133 41.667 7.70 7.70 45.00 4.20
4099 6726 5.640783 TGAGACATAACGAAGTCTAAGTCGA 59.359 40.000 0.00 0.00 45.00 4.20
4100 6727 5.866075 TGAGACATAACGAAGTCTAAGTCG 58.134 41.667 0.00 0.00 45.00 4.18
4102 6729 6.821031 ACTGAGACATAACGAAGTCTAAGT 57.179 37.500 6.74 6.74 46.82 2.24
4103 6730 5.960683 CGACTGAGACATAACGAAGTCTAAG 59.039 44.000 5.59 5.59 45.00 2.18
4104 6731 5.640783 TCGACTGAGACATAACGAAGTCTAA 59.359 40.000 0.00 0.00 45.00 2.10
4105 6732 5.173664 TCGACTGAGACATAACGAAGTCTA 58.826 41.667 0.00 0.00 45.00 2.59
4106 6733 4.001652 TCGACTGAGACATAACGAAGTCT 58.998 43.478 0.00 0.00 45.00 3.24
4107 6734 4.337985 TCGACTGAGACATAACGAAGTC 57.662 45.455 0.00 0.00 45.00 3.01
4109 6736 4.663166 ACATCGACTGAGACATAACGAAG 58.337 43.478 0.00 0.00 33.77 3.79
4110 6737 4.696899 ACATCGACTGAGACATAACGAA 57.303 40.909 0.00 0.00 33.77 3.85
4111 6738 4.696899 AACATCGACTGAGACATAACGA 57.303 40.909 0.00 0.00 0.00 3.85
4112 6739 8.729529 AATATAACATCGACTGAGACATAACG 57.270 34.615 0.00 0.00 0.00 3.18
4113 6740 9.130312 GGAATATAACATCGACTGAGACATAAC 57.870 37.037 0.00 0.00 0.00 1.89
4114 6741 8.856103 TGGAATATAACATCGACTGAGACATAA 58.144 33.333 0.00 0.00 0.00 1.90
4115 6742 8.404107 TGGAATATAACATCGACTGAGACATA 57.596 34.615 0.00 0.00 0.00 2.29
4116 6743 7.290110 TGGAATATAACATCGACTGAGACAT 57.710 36.000 0.00 0.00 0.00 3.06
4117 6744 6.709018 TGGAATATAACATCGACTGAGACA 57.291 37.500 0.00 0.00 0.00 3.41
4118 6745 7.867909 TCAATGGAATATAACATCGACTGAGAC 59.132 37.037 0.00 0.00 0.00 3.36
4119 6746 7.951591 TCAATGGAATATAACATCGACTGAGA 58.048 34.615 0.00 0.00 0.00 3.27
4120 6747 8.768957 ATCAATGGAATATAACATCGACTGAG 57.231 34.615 0.00 0.00 0.00 3.35
4121 6748 8.588472 AGATCAATGGAATATAACATCGACTGA 58.412 33.333 0.00 0.00 0.00 3.41
4122 6749 8.768957 AGATCAATGGAATATAACATCGACTG 57.231 34.615 0.00 0.00 0.00 3.51
4123 6750 9.212641 CAAGATCAATGGAATATAACATCGACT 57.787 33.333 0.00 0.00 0.00 4.18
4124 6751 7.959651 GCAAGATCAATGGAATATAACATCGAC 59.040 37.037 0.00 0.00 0.00 4.20
4125 6752 7.661027 TGCAAGATCAATGGAATATAACATCGA 59.339 33.333 0.00 0.00 0.00 3.59
4126 6753 7.809665 TGCAAGATCAATGGAATATAACATCG 58.190 34.615 0.00 0.00 0.00 3.84
4207 6834 8.867097 ACTTAACCAAGTCTCACTTAAGTGATA 58.133 33.333 32.76 24.97 44.28 2.15
4208 6835 7.736893 ACTTAACCAAGTCTCACTTAAGTGAT 58.263 34.615 32.76 19.19 44.28 3.06
4209 6836 7.120923 ACTTAACCAAGTCTCACTTAAGTGA 57.879 36.000 31.11 31.11 45.66 3.41
4236 6863 3.004419 TGTGTCTAGGTTTCAGTCGACTG 59.996 47.826 34.76 34.76 45.08 3.51
4237 6864 3.004524 GTGTGTCTAGGTTTCAGTCGACT 59.995 47.826 13.58 13.58 0.00 4.18
4238 6865 3.306818 GTGTGTCTAGGTTTCAGTCGAC 58.693 50.000 7.70 7.70 0.00 4.20
4239 6866 2.295349 GGTGTGTCTAGGTTTCAGTCGA 59.705 50.000 0.00 0.00 0.00 4.20
4240 6867 2.609737 GGGTGTGTCTAGGTTTCAGTCG 60.610 54.545 0.00 0.00 0.00 4.18
4241 6868 2.633481 AGGGTGTGTCTAGGTTTCAGTC 59.367 50.000 0.00 0.00 0.00 3.51
4242 6869 2.690840 AGGGTGTGTCTAGGTTTCAGT 58.309 47.619 0.00 0.00 0.00 3.41
4243 6870 3.771577 AAGGGTGTGTCTAGGTTTCAG 57.228 47.619 0.00 0.00 0.00 3.02
4244 6871 5.308497 TGATAAAGGGTGTGTCTAGGTTTCA 59.692 40.000 0.00 0.00 0.00 2.69
4245 6872 5.801380 TGATAAAGGGTGTGTCTAGGTTTC 58.199 41.667 0.00 0.00 0.00 2.78
4246 6873 5.836024 TGATAAAGGGTGTGTCTAGGTTT 57.164 39.130 0.00 0.00 0.00 3.27
4247 6874 6.672657 AGTATGATAAAGGGTGTGTCTAGGTT 59.327 38.462 0.00 0.00 0.00 3.50
4248 6875 6.203072 AGTATGATAAAGGGTGTGTCTAGGT 58.797 40.000 0.00 0.00 0.00 3.08
4249 6876 6.732896 AGTATGATAAAGGGTGTGTCTAGG 57.267 41.667 0.00 0.00 0.00 3.02
4252 6879 9.601810 TGATATAGTATGATAAAGGGTGTGTCT 57.398 33.333 0.00 0.00 0.00 3.41
4253 6880 9.640963 GTGATATAGTATGATAAAGGGTGTGTC 57.359 37.037 0.00 0.00 0.00 3.67
4254 6881 9.381038 AGTGATATAGTATGATAAAGGGTGTGT 57.619 33.333 0.00 0.00 0.00 3.72
4265 6892 8.993121 CGCTTTTGGAAAGTGATATAGTATGAT 58.007 33.333 7.95 0.00 0.00 2.45
4266 6893 7.985184 ACGCTTTTGGAAAGTGATATAGTATGA 59.015 33.333 17.82 0.00 0.00 2.15
4267 6894 8.142994 ACGCTTTTGGAAAGTGATATAGTATG 57.857 34.615 17.82 0.00 0.00 2.39
4268 6895 8.732746 AACGCTTTTGGAAAGTGATATAGTAT 57.267 30.769 17.82 0.00 0.00 2.12
4269 6896 8.556213 AAACGCTTTTGGAAAGTGATATAGTA 57.444 30.769 17.82 0.00 0.00 1.82
4270 6897 7.361799 GGAAACGCTTTTGGAAAGTGATATAGT 60.362 37.037 17.82 0.00 0.00 2.12
4271 6898 6.967199 GGAAACGCTTTTGGAAAGTGATATAG 59.033 38.462 17.82 0.00 0.00 1.31
4272 6899 6.657541 AGGAAACGCTTTTGGAAAGTGATATA 59.342 34.615 17.82 0.00 0.00 0.86
4273 6900 5.476945 AGGAAACGCTTTTGGAAAGTGATAT 59.523 36.000 17.82 6.02 0.00 1.63
4274 6901 4.825085 AGGAAACGCTTTTGGAAAGTGATA 59.175 37.500 17.82 0.00 0.00 2.15
4275 6902 3.636764 AGGAAACGCTTTTGGAAAGTGAT 59.363 39.130 17.82 6.06 0.00 3.06
4276 6903 3.020984 AGGAAACGCTTTTGGAAAGTGA 58.979 40.909 17.82 0.00 0.00 3.41
4277 6904 3.066760 AGAGGAAACGCTTTTGGAAAGTG 59.933 43.478 11.27 11.27 37.03 3.16
4278 6905 3.288092 AGAGGAAACGCTTTTGGAAAGT 58.712 40.909 0.00 0.00 37.03 2.66
4279 6906 3.565902 AGAGAGGAAACGCTTTTGGAAAG 59.434 43.478 0.00 0.00 42.18 2.62
4280 6907 3.315191 CAGAGAGGAAACGCTTTTGGAAA 59.685 43.478 0.00 0.00 42.18 3.13
4300 6927 1.901650 GCGGGAGAAAACGAGCACAG 61.902 60.000 0.00 0.00 0.00 3.66
4357 6984 2.909965 GTCCTTTTGCCGGTGCCA 60.910 61.111 1.90 0.00 36.33 4.92
4392 7020 1.806461 GCTCCATGATCCGGCGAGTA 61.806 60.000 9.30 0.00 0.00 2.59
4393 7021 3.133014 CTCCATGATCCGGCGAGT 58.867 61.111 9.30 0.00 0.00 4.18
4429 7057 4.087892 CAGGGGACGGAGGCACTG 62.088 72.222 0.00 0.00 41.55 3.66
4439 7067 1.341156 CCACTCCATCTCCAGGGGAC 61.341 65.000 0.00 0.00 34.76 4.46
4498 7126 2.950877 GAGAGCATCGGTTCGTCAG 58.049 57.895 0.00 0.00 42.67 3.51
4549 7183 4.083862 GAGGACGGTGGGGCAGTC 62.084 72.222 0.00 0.00 40.77 3.51
4550 7184 4.954118 TGAGGACGGTGGGGCAGT 62.954 66.667 0.00 0.00 0.00 4.40
4583 7217 1.436983 GCTTTCCGGCCTGGTTATCG 61.437 60.000 12.46 0.00 39.52 2.92
4596 7230 4.388499 TGGAGGACGGCGCTTTCC 62.388 66.667 17.21 17.21 0.00 3.13
4597 7231 3.119096 GTGGAGGACGGCGCTTTC 61.119 66.667 6.90 3.49 0.00 2.62
4598 7232 3.626924 AGTGGAGGACGGCGCTTT 61.627 61.111 6.90 0.00 0.00 3.51
4599 7233 4.379243 CAGTGGAGGACGGCGCTT 62.379 66.667 6.90 0.00 0.00 4.68
4644 7278 0.426394 GAAATACGATCTCGACGCGC 59.574 55.000 5.73 0.00 43.02 6.86



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.