Multiple sequence alignment - TraesCS7D01G395800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G395800 chr7D 100.000 9148 0 0 1 9148 510463814 510454667 0.000000e+00 16894.0
1 TraesCS7D01G395800 chr7A 95.261 7196 178 45 1 7126 581358379 581351277 0.000000e+00 11249.0
2 TraesCS7D01G395800 chr7A 93.502 1816 92 12 7111 8917 581351210 581349412 0.000000e+00 2676.0
3 TraesCS7D01G395800 chr7A 86.792 53 4 3 2326 2376 452163296 452163347 1.000000e-03 56.5
4 TraesCS7D01G395800 chr7B 96.942 6377 133 21 717 7052 538878422 538872067 0.000000e+00 10639.0
5 TraesCS7D01G395800 chr7B 92.823 1686 95 11 7257 8931 538870785 538869115 0.000000e+00 2420.0
6 TraesCS7D01G395800 chr7B 98.113 106 2 0 7044 7149 538870884 538870779 1.570000e-42 185.0
7 TraesCS7D01G395800 chr7B 90.741 54 4 1 1 53 538879007 538878954 4.580000e-08 71.3
8 TraesCS7D01G395800 chr7B 88.462 52 5 1 2326 2376 135183447 135183498 2.760000e-05 62.1
9 TraesCS7D01G395800 chr3D 92.766 1258 71 12 5173 6421 156259233 156257987 0.000000e+00 1801.0
10 TraesCS7D01G395800 chr3D 88.898 1180 100 18 2624 3800 156286333 156285182 0.000000e+00 1424.0
11 TraesCS7D01G395800 chr3D 89.765 850 56 10 4338 5178 156260101 156259274 0.000000e+00 1059.0
12 TraesCS7D01G395800 chr3D 92.237 438 29 4 1924 2359 153511725 153512159 4.690000e-172 616.0
13 TraesCS7D01G395800 chr3D 92.308 351 23 2 3947 4294 156260463 156260114 6.380000e-136 496.0
14 TraesCS7D01G395800 chr3D 79.778 722 85 23 8398 9106 156256828 156256155 1.390000e-127 468.0
15 TraesCS7D01G395800 chr3D 95.539 269 10 1 7677 7943 156257977 156257709 6.560000e-116 429.0
16 TraesCS7D01G395800 chr3D 81.490 443 48 16 7947 8358 156257278 156256839 5.290000e-87 333.0
17 TraesCS7D01G395800 chr3D 87.607 234 18 4 2397 2628 153512402 153512626 2.530000e-65 261.0
18 TraesCS7D01G395800 chr3D 90.260 154 15 0 3802 3955 156265411 156265258 1.560000e-47 202.0
19 TraesCS7D01G395800 chr3A 87.687 1340 130 20 2624 3955 176045454 176044142 0.000000e+00 1528.0
20 TraesCS7D01G395800 chr3A 88.168 786 61 13 4402 5178 176018372 176017610 0.000000e+00 907.0
21 TraesCS7D01G395800 chr3A 94.403 536 27 3 5374 5906 175959487 175958952 0.000000e+00 821.0
22 TraesCS7D01G395800 chr3A 79.170 1205 121 59 7947 9106 175957489 175956370 0.000000e+00 715.0
23 TraesCS7D01G395800 chr3A 94.345 336 16 3 6087 6421 175958544 175958211 6.340000e-141 512.0
24 TraesCS7D01G395800 chr3A 92.308 351 23 2 3947 4294 176023064 176022715 6.380000e-136 496.0
25 TraesCS7D01G395800 chr3A 94.052 269 14 1 7677 7943 175958201 175957933 3.080000e-109 407.0
26 TraesCS7D01G395800 chr3A 93.665 221 13 1 2139 2359 176118182 176117963 6.850000e-86 329.0
27 TraesCS7D01G395800 chr3A 92.718 206 15 0 5173 5378 176017569 176017364 1.930000e-76 298.0
28 TraesCS7D01G395800 chr3A 88.034 234 17 6 2397 2628 176117721 176117497 5.450000e-67 267.0
29 TraesCS7D01G395800 chr3A 85.778 225 26 5 1924 2146 176136037 176135817 5.520000e-57 233.0
30 TraesCS7D01G395800 chr3A 92.857 70 5 0 4338 4407 176022702 176022633 1.630000e-17 102.0
31 TraesCS7D01G395800 chr2B 78.289 152 32 1 7014 7164 518046542 518046391 7.560000e-16 97.1
32 TraesCS7D01G395800 chr6D 100.000 29 0 0 2348 2376 137036782 137036754 5.000000e-03 54.7
33 TraesCS7D01G395800 chr6D 100.000 29 0 0 2348 2376 207616551 207616579 5.000000e-03 54.7
34 TraesCS7D01G395800 chr6A 100.000 29 0 0 2348 2376 153622107 153622135 5.000000e-03 54.7
35 TraesCS7D01G395800 chr6A 100.000 29 0 0 2348 2376 429081353 429081325 5.000000e-03 54.7
36 TraesCS7D01G395800 chr1A 100.000 29 0 0 2348 2376 174884117 174884145 5.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G395800 chr7D 510454667 510463814 9147 True 16894.000000 16894 100.000000 1 9148 1 chr7D.!!$R1 9147
1 TraesCS7D01G395800 chr7A 581349412 581358379 8967 True 6962.500000 11249 94.381500 1 8917 2 chr7A.!!$R1 8916
2 TraesCS7D01G395800 chr7B 538869115 538879007 9892 True 3328.825000 10639 94.654750 1 8931 4 chr7B.!!$R1 8930
3 TraesCS7D01G395800 chr3D 156285182 156286333 1151 True 1424.000000 1424 88.898000 2624 3800 1 chr3D.!!$R2 1176
4 TraesCS7D01G395800 chr3D 156256155 156260463 4308 True 764.333333 1801 88.607667 3947 9106 6 chr3D.!!$R3 5159
5 TraesCS7D01G395800 chr3D 153511725 153512626 901 False 438.500000 616 89.922000 1924 2628 2 chr3D.!!$F1 704
6 TraesCS7D01G395800 chr3A 176044142 176045454 1312 True 1528.000000 1528 87.687000 2624 3955 1 chr3A.!!$R1 1331
7 TraesCS7D01G395800 chr3A 175956370 175959487 3117 True 613.750000 821 90.492500 5374 9106 4 chr3A.!!$R3 3732
8 TraesCS7D01G395800 chr3A 176017364 176018372 1008 True 602.500000 907 90.443000 4402 5378 2 chr3A.!!$R4 976
9 TraesCS7D01G395800 chr3A 176117497 176118182 685 True 298.000000 329 90.849500 2139 2628 2 chr3A.!!$R6 489

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
222 225 0.036765 CGATTTTCCCCTCACCACGA 60.037 55.000 0.00 0.0 0.00 4.35 F
938 1032 0.179045 AACGATGCATCTAGTGGGCC 60.179 55.000 23.73 0.0 0.00 5.80 F
2113 2214 0.684805 ACGTCTAGAGCTCCCAAGGG 60.685 60.000 10.93 0.0 0.00 3.95 F
2846 3358 3.391296 GGGCATGAGGACCTGACTTAATA 59.609 47.826 0.00 0.0 43.78 0.98 F
2888 3400 4.286291 AGTTTAGAACTAGAACCCCACAGG 59.714 45.833 0.00 0.0 40.69 4.00 F
4316 4841 5.390040 CCGTTTCTTACACGTTATGCATGAA 60.390 40.000 10.16 0.0 35.81 2.57 F
5161 5695 4.262249 GGTCTCCATGAGAATGCTACCTAC 60.262 50.000 0.00 0.0 40.59 3.18 F
6691 7531 0.516877 TTGAAATCAAGCTGTCGCCG 59.483 50.000 0.00 0.0 36.60 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1921 2019 1.755200 AGGAACTGGCCCTCCTAAAA 58.245 50.000 14.87 0.0 40.42 1.52 R
2634 3143 1.648467 GAGCTGCGACACCCCATTTC 61.648 60.000 0.00 0.0 0.00 2.17 R
3346 3859 2.615227 ATCTGCAATGGGACTCGGGC 62.615 60.000 0.00 0.0 0.00 6.13 R
4124 4646 6.446781 ACAGTTTAGCATTGATGAGGATTG 57.553 37.500 0.00 0.0 0.00 2.67 R
4506 5039 9.254133 CATGGAAATATACGGATATCACTGATC 57.746 37.037 0.00 0.0 0.00 2.92 R
5836 6420 6.481954 ACACGAGGATTAATTGTTTCTGAC 57.518 37.500 0.00 0.0 0.00 3.51 R
6710 7550 0.250727 TGACTACCACAAAGCTGGCC 60.251 55.000 0.00 0.0 34.20 5.36 R
8666 11684 1.068121 AAGTTTCCCCTCACTCCCTG 58.932 55.000 0.00 0.0 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
176 179 6.360148 GCTGCTACGTACATTAGATTAGTGTC 59.640 42.308 0.00 0.00 30.84 3.67
177 180 6.732154 TGCTACGTACATTAGATTAGTGTCC 58.268 40.000 0.00 0.00 30.84 4.02
180 183 7.866393 GCTACGTACATTAGATTAGTGTCCATT 59.134 37.037 0.00 0.00 30.84 3.16
181 184 9.181805 CTACGTACATTAGATTAGTGTCCATTG 57.818 37.037 0.00 0.00 30.84 2.82
182 185 7.553334 ACGTACATTAGATTAGTGTCCATTGT 58.447 34.615 0.00 0.00 30.84 2.71
184 187 8.328146 CGTACATTAGATTAGTGTCCATTGTTG 58.672 37.037 0.00 0.00 30.84 3.33
186 189 5.794687 TTAGATTAGTGTCCATTGTTGCG 57.205 39.130 0.00 0.00 0.00 4.85
187 190 2.420022 AGATTAGTGTCCATTGTTGCGC 59.580 45.455 0.00 0.00 0.00 6.09
189 192 1.890876 TAGTGTCCATTGTTGCGCTT 58.109 45.000 9.73 0.00 0.00 4.68
190 193 0.311790 AGTGTCCATTGTTGCGCTTG 59.688 50.000 9.73 0.00 0.00 4.01
191 194 1.007502 TGTCCATTGTTGCGCTTGC 60.008 52.632 9.73 0.00 39.78 4.01
193 196 3.472298 CCATTGTTGCGCTTGCGC 61.472 61.111 29.59 29.59 43.34 6.09
214 217 2.043953 GCCTGGCGATTTTCCCCT 60.044 61.111 1.35 0.00 0.00 4.79
215 218 2.121538 GCCTGGCGATTTTCCCCTC 61.122 63.158 1.35 0.00 0.00 4.30
216 219 1.302949 CCTGGCGATTTTCCCCTCA 59.697 57.895 0.00 0.00 0.00 3.86
217 220 1.032114 CCTGGCGATTTTCCCCTCAC 61.032 60.000 0.00 0.00 0.00 3.51
218 221 1.001393 TGGCGATTTTCCCCTCACC 60.001 57.895 0.00 0.00 0.00 4.02
219 222 1.001393 GGCGATTTTCCCCTCACCA 60.001 57.895 0.00 0.00 0.00 4.17
220 223 1.313091 GGCGATTTTCCCCTCACCAC 61.313 60.000 0.00 0.00 0.00 4.16
221 224 1.644786 GCGATTTTCCCCTCACCACG 61.645 60.000 0.00 0.00 0.00 4.94
222 225 0.036765 CGATTTTCCCCTCACCACGA 60.037 55.000 0.00 0.00 0.00 4.35
223 226 1.739067 GATTTTCCCCTCACCACGAG 58.261 55.000 0.00 0.00 41.89 4.18
224 227 0.322546 ATTTTCCCCTCACCACGAGC 60.323 55.000 0.00 0.00 40.78 5.03
225 228 2.725203 TTTTCCCCTCACCACGAGCG 62.725 60.000 0.00 0.00 40.78 5.03
226 229 4.671590 TCCCCTCACCACGAGCGA 62.672 66.667 0.00 0.00 40.78 4.93
227 230 4.436998 CCCCTCACCACGAGCGAC 62.437 72.222 0.00 0.00 40.78 5.19
228 231 3.374402 CCCTCACCACGAGCGACT 61.374 66.667 0.00 0.00 40.78 4.18
229 232 2.179517 CCTCACCACGAGCGACTC 59.820 66.667 0.00 0.00 40.78 3.36
230 233 2.179517 CTCACCACGAGCGACTCC 59.820 66.667 0.00 0.00 34.18 3.85
231 234 2.282251 TCACCACGAGCGACTCCT 60.282 61.111 0.00 0.00 0.00 3.69
232 235 2.179517 CACCACGAGCGACTCCTC 59.820 66.667 0.00 0.00 0.00 3.71
368 421 3.003482 GGTAGATAGATTCGCGTGTCTGT 59.997 47.826 20.64 16.03 0.00 3.41
369 422 3.341857 AGATAGATTCGCGTGTCTGTC 57.658 47.619 22.29 22.29 34.11 3.51
372 425 1.169577 AGATTCGCGTGTCTGTCTCT 58.830 50.000 5.77 0.00 0.00 3.10
373 426 1.135546 AGATTCGCGTGTCTGTCTCTG 60.136 52.381 5.77 0.00 0.00 3.35
375 428 2.749110 TTCGCGTGTCTGTCTCTGGC 62.749 60.000 5.77 0.00 0.00 4.85
376 429 2.433318 GCGTGTCTGTCTCTGGCC 60.433 66.667 0.00 0.00 0.00 5.36
377 430 2.936912 GCGTGTCTGTCTCTGGCCT 61.937 63.158 3.32 0.00 0.00 5.19
378 431 1.080230 CGTGTCTGTCTCTGGCCTG 60.080 63.158 3.32 2.92 0.00 4.85
379 432 1.375268 GTGTCTGTCTCTGGCCTGC 60.375 63.158 3.32 0.00 0.00 4.85
380 433 1.838396 TGTCTGTCTCTGGCCTGCA 60.838 57.895 3.32 0.00 0.00 4.41
381 434 1.372683 GTCTGTCTCTGGCCTGCAA 59.627 57.895 3.32 0.00 0.00 4.08
382 435 0.673022 GTCTGTCTCTGGCCTGCAAG 60.673 60.000 3.32 0.00 0.00 4.01
383 436 2.033141 TGTCTCTGGCCTGCAAGC 59.967 61.111 3.32 0.00 0.00 4.01
401 454 3.144120 CTGCCCGTCTCTGGATCGG 62.144 68.421 0.00 0.00 43.30 4.18
425 478 2.156917 TGAGATGCTGCTTTGAGTTGG 58.843 47.619 0.00 0.00 0.00 3.77
450 503 7.329717 GGTTCGCATTCTATCTCTAAAATCGAT 59.670 37.037 0.00 0.00 0.00 3.59
451 504 8.369588 GTTCGCATTCTATCTCTAAAATCGATC 58.630 37.037 0.00 0.00 0.00 3.69
452 505 6.743172 TCGCATTCTATCTCTAAAATCGATCG 59.257 38.462 9.36 9.36 0.00 3.69
453 506 6.505576 CGCATTCTATCTCTAAAATCGATCGC 60.506 42.308 11.09 0.00 0.00 4.58
454 507 6.505576 GCATTCTATCTCTAAAATCGATCGCG 60.506 42.308 11.09 0.00 39.35 5.87
455 508 4.404324 TCTATCTCTAAAATCGATCGCGC 58.596 43.478 11.09 0.00 37.46 6.86
456 509 1.395670 TCTCTAAAATCGATCGCGCG 58.604 50.000 26.76 26.76 37.46 6.86
457 510 0.431233 CTCTAAAATCGATCGCGCGG 59.569 55.000 31.69 14.65 37.46 6.46
458 511 0.248743 TCTAAAATCGATCGCGCGGT 60.249 50.000 31.69 26.40 37.46 5.68
459 512 1.002576 TCTAAAATCGATCGCGCGGTA 60.003 47.619 31.69 12.70 37.46 4.02
482 535 3.007182 AGCCATTCCAAACCAATCAACAG 59.993 43.478 0.00 0.00 0.00 3.16
539 612 3.553511 GTCAGGATCTTTGCATCACTACG 59.446 47.826 0.00 0.00 0.00 3.51
564 637 7.794810 CGTACTCGATTAGTTATCTTCACTCTG 59.205 40.741 0.00 0.00 39.80 3.35
576 649 0.545309 TCACTCTGAAGTCCTGGGGG 60.545 60.000 0.00 0.00 31.71 5.40
579 652 1.608717 CTCTGAAGTCCTGGGGGTCG 61.609 65.000 0.00 0.00 0.00 4.79
581 654 3.003763 GAAGTCCTGGGGGTCGCT 61.004 66.667 0.00 0.00 0.00 4.93
582 655 1.684734 GAAGTCCTGGGGGTCGCTA 60.685 63.158 0.00 0.00 0.00 4.26
583 656 1.957765 GAAGTCCTGGGGGTCGCTAC 61.958 65.000 0.00 0.00 0.00 3.58
680 764 4.319177 ACTAGTAGTGCCAAAAAGCTCTG 58.681 43.478 0.85 0.00 37.20 3.35
706 790 6.119536 AGGGCAAACTTACAATCGATAATCA 58.880 36.000 0.00 0.00 0.00 2.57
710 794 7.640240 GGCAAACTTACAATCGATAATCAACTC 59.360 37.037 0.00 0.00 0.00 3.01
758 842 5.944007 TCAACCTGGAAAATTACTAGGCTTC 59.056 40.000 0.00 0.00 39.16 3.86
770 864 8.521170 AATTACTAGGCTTCTTTCCCATTTAC 57.479 34.615 0.00 0.00 0.00 2.01
842 936 3.873910 TCCTGAATAAGTTACTGCTGCC 58.126 45.455 0.00 0.00 0.00 4.85
883 977 9.688592 GATTTAATCATGATGAATTTCCAGGTC 57.311 33.333 9.46 0.00 0.00 3.85
884 978 8.827832 TTTAATCATGATGAATTTCCAGGTCT 57.172 30.769 9.46 0.00 0.00 3.85
885 979 6.710597 AATCATGATGAATTTCCAGGTCTG 57.289 37.500 9.46 0.00 0.00 3.51
931 1025 5.750547 CAGCTTTAGAAGAACGATGCATCTA 59.249 40.000 23.73 6.01 0.00 1.98
938 1032 0.179045 AACGATGCATCTAGTGGGCC 60.179 55.000 23.73 0.00 0.00 5.80
1011 1105 4.280929 TGGTCTGATAATATGTCACTCCGG 59.719 45.833 0.00 0.00 0.00 5.14
1158 1252 6.895756 TGTATAGACCTGGTGATTCAGTTACT 59.104 38.462 2.82 0.00 33.14 2.24
1451 1549 9.271828 GGTGAATATTTGTTTTTGGATTGTTCT 57.728 29.630 0.00 0.00 0.00 3.01
1464 1562 5.886609 TGGATTGTTCTTCACCCTCATTAA 58.113 37.500 0.00 0.00 0.00 1.40
1641 1739 6.482308 CCTCCATTTTTCCTAGTATTGTACGG 59.518 42.308 0.00 0.00 0.00 4.02
1921 2019 4.260866 GCTGCTTGCATGTTTTTCAAACAT 60.261 37.500 8.71 8.71 41.18 2.71
2068 2167 8.491331 TTTTAAAAGAAATTGCAACTCAGCTT 57.509 26.923 0.00 0.00 34.99 3.74
2069 2168 8.491331 TTTAAAAGAAATTGCAACTCAGCTTT 57.509 26.923 0.00 5.12 34.99 3.51
2070 2169 6.990341 AAAAGAAATTGCAACTCAGCTTTT 57.010 29.167 0.00 10.76 34.99 2.27
2071 2170 6.990341 AAAGAAATTGCAACTCAGCTTTTT 57.010 29.167 0.00 0.00 34.99 1.94
2113 2214 0.684805 ACGTCTAGAGCTCCCAAGGG 60.685 60.000 10.93 0.00 0.00 3.95
2634 3143 6.009115 AGAAAACCAAGTAAATACCTTGCG 57.991 37.500 0.00 0.00 0.00 4.85
2690 3201 7.554959 TCTATTGATTACCCCTACATCCTTC 57.445 40.000 0.00 0.00 0.00 3.46
2691 3202 7.313731 TCTATTGATTACCCCTACATCCTTCT 58.686 38.462 0.00 0.00 0.00 2.85
2733 3244 7.540474 AGATGGTAGTCAAGTTTACTGAAGA 57.460 36.000 0.00 0.00 0.00 2.87
2846 3358 3.391296 GGGCATGAGGACCTGACTTAATA 59.609 47.826 0.00 0.00 43.78 0.98
2888 3400 4.286291 AGTTTAGAACTAGAACCCCACAGG 59.714 45.833 0.00 0.00 40.69 4.00
3216 3728 5.996219 TGTACTGAAAACAACATGATTCCG 58.004 37.500 0.00 0.00 0.00 4.30
3257 3769 6.471233 TCATTCTCTACTTCATACCCAGTG 57.529 41.667 0.00 0.00 0.00 3.66
3308 3821 8.327832 GACATTAAAATAAGCCAAATGTCTCG 57.672 34.615 15.62 0.00 46.57 4.04
3985 4504 5.749596 TTCATGAAAACCTATATGCACGG 57.250 39.130 5.45 0.00 0.00 4.94
4316 4841 5.390040 CCGTTTCTTACACGTTATGCATGAA 60.390 40.000 10.16 0.00 35.81 2.57
4674 5207 8.837099 TCATACAACCCTTCCAAATCAAATAT 57.163 30.769 0.00 0.00 0.00 1.28
5161 5695 4.262249 GGTCTCCATGAGAATGCTACCTAC 60.262 50.000 0.00 0.00 40.59 3.18
5442 6025 6.644592 GCTCCTTTTGTTGTAAATTACATGCA 59.355 34.615 6.67 6.73 38.68 3.96
5836 6420 6.479001 CACAGGTATCTATAACCTTGGAAACG 59.521 42.308 0.00 0.00 45.26 3.60
6239 7061 6.093909 TGTGCATGTAGTTTGATTAGGATGTG 59.906 38.462 0.00 0.00 0.00 3.21
6481 7303 2.224597 TGTGTGTTGGCTGATGTGAGAT 60.225 45.455 0.00 0.00 0.00 2.75
6528 7350 1.538047 GGTGATGGCACTCATGTTGT 58.462 50.000 0.00 0.00 44.52 3.32
6604 7426 6.751888 GCACACAAATCATTAAACCTATGACC 59.248 38.462 0.00 0.00 35.03 4.02
6688 7528 3.120095 TCTGCATTGAAATCAAGCTGTCG 60.120 43.478 14.30 0.00 39.47 4.35
6691 7531 0.516877 TTGAAATCAAGCTGTCGCCG 59.483 50.000 0.00 0.00 36.60 6.46
6710 7550 1.214589 CCACTAGACCCGAACACCG 59.785 63.158 0.00 0.00 38.18 4.94
6728 7568 1.298859 CGGCCAGCTTTGTGGTAGTC 61.299 60.000 2.24 0.00 40.09 2.59
6732 7572 2.002586 CCAGCTTTGTGGTAGTCATCG 58.997 52.381 0.00 0.00 32.32 3.84
6745 7585 1.153568 TCATCGCGCTCCTCTTTGG 60.154 57.895 5.56 0.00 37.10 3.28
6789 7629 0.106519 AGCTGGAGCAGGTTGTTGTT 60.107 50.000 0.65 0.00 39.27 2.83
6790 7630 0.746659 GCTGGAGCAGGTTGTTGTTT 59.253 50.000 0.00 0.00 41.59 2.83
6846 7688 6.479001 TCACGTCTCCTCTTCTTTAAAACAAG 59.521 38.462 0.00 0.00 0.00 3.16
6916 7758 4.118410 GTCAGAGATGTGAGGTTGCTATG 58.882 47.826 0.00 0.00 0.00 2.23
7235 9350 8.762481 AGGTAGTAAAAGGAAGAAAACATGTT 57.238 30.769 4.92 4.92 0.00 2.71
7497 9612 7.652105 GCAATATTAGATGTCACGAGTCCTTAA 59.348 37.037 0.00 0.00 0.00 1.85
7532 9647 2.935201 CAGTGATTAGAGAGGTGCTTGC 59.065 50.000 0.00 0.00 0.00 4.01
7544 9659 0.383949 GTGCTTGCGAAAAGGAACCA 59.616 50.000 0.00 0.00 0.00 3.67
7581 9696 3.968096 CACCGATGCTTATTTGTATTGCG 59.032 43.478 0.00 0.00 0.00 4.85
7924 10041 2.126882 TGGACTCATCAAGGTATGGGG 58.873 52.381 0.00 0.00 31.13 4.96
7943 10060 2.300152 GGGCGTGATGATCTTATGGAGA 59.700 50.000 0.00 0.00 39.13 3.71
7949 10066 7.074502 GCGTGATGATCTTATGGAGAAAATTC 58.925 38.462 0.00 0.00 38.06 2.17
8170 11152 3.118847 AGGTATGCAGTCTGTCTGTCATG 60.119 47.826 15.80 0.00 45.23 3.07
8179 11161 4.081198 AGTCTGTCTGTCATGGGATTCTTC 60.081 45.833 0.00 0.00 0.00 2.87
8182 11164 5.721480 TCTGTCTGTCATGGGATTCTTCTTA 59.279 40.000 0.00 0.00 0.00 2.10
8189 11177 4.164221 TCATGGGATTCTTCTTACCTGTCC 59.836 45.833 0.00 0.00 0.00 4.02
8250 11256 5.942872 AGTATGCAACAATGTCAAAGTAGC 58.057 37.500 0.00 0.00 0.00 3.58
8332 11344 1.353804 CCGAGTCGCAGTCTAGCTC 59.646 63.158 7.12 0.00 0.00 4.09
8410 11422 5.607119 TTCTTTGCATTTTCGTCCTAGTC 57.393 39.130 0.00 0.00 0.00 2.59
8594 11609 0.170561 CGGACCTTCGGTGAGTACTG 59.829 60.000 0.00 0.00 35.25 2.74
8688 11707 0.771755 GGAGTGAGGGGAAACTTGGT 59.228 55.000 0.00 0.00 0.00 3.67
8703 11722 7.201839 GGGAAACTTGGTTTACACAAATAGTCA 60.202 37.037 7.53 0.00 38.04 3.41
8722 11741 6.975196 AGTCAGCTTCTGTCTGATGTATAT 57.025 37.500 0.00 0.00 41.93 0.86
8723 11742 9.746457 ATAGTCAGCTTCTGTCTGATGTATATA 57.254 33.333 4.32 0.00 41.93 0.86
8741 11765 8.768501 TGTATATAGTTCATCACCAGAGAAGT 57.231 34.615 0.00 0.00 0.00 3.01
8745 11769 4.892433 AGTTCATCACCAGAGAAGTGAAG 58.108 43.478 0.00 0.00 46.67 3.02
8767 11791 3.562182 AGGAACCGTGGAACTTGATTTT 58.438 40.909 0.00 0.00 31.75 1.82
8793 11825 2.744787 GCGTAGTGCAAGATTCCATG 57.255 50.000 0.00 0.00 45.45 3.66
8804 11836 2.050144 AGATTCCATGCCATACCGACT 58.950 47.619 0.00 0.00 0.00 4.18
8831 11863 3.723764 GCGCATCCAATGTATACGTTTTG 59.276 43.478 7.62 6.78 0.00 2.44
8832 11864 3.723764 CGCATCCAATGTATACGTTTTGC 59.276 43.478 18.56 18.56 0.00 3.68
8833 11865 4.667262 GCATCCAATGTATACGTTTTGCA 58.333 39.130 21.25 5.96 0.00 4.08
8839 11872 5.866633 CCAATGTATACGTTTTGCAAATGGT 59.133 36.000 13.65 15.53 0.00 3.55
8856 11890 1.497286 TGGTCTAGCTTTTTGGGGTGT 59.503 47.619 0.00 0.00 0.00 4.16
8862 11896 3.751479 AGCTTTTTGGGGTGTTTGATC 57.249 42.857 0.00 0.00 0.00 2.92
8874 11908 5.417580 GGGGTGTTTGATCAAGCTATTACAA 59.582 40.000 21.00 0.00 0.00 2.41
8900 11934 6.882140 CCTTGTGGTTGGTTACATATACTTGA 59.118 38.462 0.00 0.00 0.00 3.02
8921 11955 9.171877 ACTTGAGATATCTTTTCCTTGTGATTC 57.828 33.333 6.70 0.00 0.00 2.52
8922 11956 8.511604 TTGAGATATCTTTTCCTTGTGATTCC 57.488 34.615 6.70 0.00 0.00 3.01
8923 11957 7.865820 TGAGATATCTTTTCCTTGTGATTCCT 58.134 34.615 6.70 0.00 0.00 3.36
8924 11958 8.331740 TGAGATATCTTTTCCTTGTGATTCCTT 58.668 33.333 6.70 0.00 0.00 3.36
8925 11959 9.183368 GAGATATCTTTTCCTTGTGATTCCTTT 57.817 33.333 6.70 0.00 0.00 3.11
8926 11960 9.539194 AGATATCTTTTCCTTGTGATTCCTTTT 57.461 29.630 0.00 0.00 0.00 2.27
8954 11988 6.790232 TGAGGGGATAATTCCATTGTTTTC 57.210 37.500 0.00 0.00 44.60 2.29
8979 12013 4.334203 GGAAACCATACATGATTGTACGCA 59.666 41.667 0.00 0.00 41.02 5.24
8990 12024 0.033642 TTGTACGCATGTTGTCCGGA 59.966 50.000 0.00 0.00 0.00 5.14
8998 12032 2.066262 CATGTTGTCCGGACTACACAC 58.934 52.381 41.01 25.93 46.33 3.82
8999 12033 1.112950 TGTTGTCCGGACTACACACA 58.887 50.000 37.19 25.75 40.91 3.72
9000 12034 1.689813 TGTTGTCCGGACTACACACAT 59.310 47.619 37.19 0.00 40.91 3.21
9001 12035 2.892215 TGTTGTCCGGACTACACACATA 59.108 45.455 37.19 20.44 40.91 2.29
9023 12057 2.660064 TTTCCTCGAGGCTGCTCCC 61.660 63.158 27.39 0.00 34.51 4.30
9029 12063 2.686835 GAGGCTGCTCCCCAGAGT 60.687 66.667 0.00 0.00 44.64 3.24
9035 12069 2.749441 GCTCCCCAGAGTTGCAGC 60.749 66.667 0.00 0.00 42.59 5.25
9070 12104 3.386543 ATGGCTTCCATCTACGTGC 57.613 52.632 0.00 0.00 40.74 5.34
9083 12117 5.325494 CATCTACGTGCGGATAGATACTTC 58.675 45.833 0.00 0.00 36.25 3.01
9088 12122 4.222886 CGTGCGGATAGATACTTCTTCAG 58.777 47.826 0.00 0.00 33.17 3.02
9144 12178 6.002062 AAGTTGTATACTTGCTTGTTCAGC 57.998 37.500 4.17 0.00 45.33 4.26
9145 12179 5.048713 AAGTTGTATACTTGCTTGTTCAGCC 60.049 40.000 4.17 0.00 45.33 4.85
9146 12180 8.211869 AAGTTGTATACTTGCTTGTTCAGCCG 62.212 42.308 4.17 0.00 45.33 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
203 206 0.036765 TCGTGGTGAGGGGAAAATCG 60.037 55.000 0.00 0.00 0.00 3.34
205 208 0.322546 GCTCGTGGTGAGGGGAAAAT 60.323 55.000 0.00 0.00 45.38 1.82
206 209 1.072505 GCTCGTGGTGAGGGGAAAA 59.927 57.895 0.00 0.00 45.38 2.29
207 210 2.747686 GCTCGTGGTGAGGGGAAA 59.252 61.111 0.00 0.00 45.38 3.13
212 215 2.179517 GAGTCGCTCGTGGTGAGG 59.820 66.667 0.00 0.00 45.38 3.86
214 217 2.282251 AGGAGTCGCTCGTGGTGA 60.282 61.111 2.09 0.00 0.00 4.02
215 218 2.179517 GAGGAGTCGCTCGTGGTG 59.820 66.667 6.76 0.00 0.00 4.17
216 219 3.432588 CGAGGAGTCGCTCGTGGT 61.433 66.667 17.73 0.00 39.88 4.16
225 228 2.095252 GGAGCAAACGCGAGGAGTC 61.095 63.158 15.93 3.30 0.00 3.36
226 229 2.048127 GGAGCAAACGCGAGGAGT 60.048 61.111 15.93 0.00 0.00 3.85
227 230 2.815647 GGGAGCAAACGCGAGGAG 60.816 66.667 15.93 0.00 0.00 3.69
228 231 3.296709 GAGGGAGCAAACGCGAGGA 62.297 63.158 15.93 0.00 0.00 3.71
229 232 1.945354 TAGAGGGAGCAAACGCGAGG 61.945 60.000 15.93 1.96 0.00 4.63
230 233 0.103208 ATAGAGGGAGCAAACGCGAG 59.897 55.000 15.93 2.87 0.00 5.03
231 234 0.102481 GATAGAGGGAGCAAACGCGA 59.898 55.000 15.93 0.00 0.00 5.87
232 235 0.103208 AGATAGAGGGAGCAAACGCG 59.897 55.000 3.53 3.53 0.00 6.01
233 236 1.539280 GGAGATAGAGGGAGCAAACGC 60.539 57.143 0.00 0.00 0.00 4.84
234 237 1.069358 GGGAGATAGAGGGAGCAAACG 59.931 57.143 0.00 0.00 0.00 3.60
235 238 2.119495 TGGGAGATAGAGGGAGCAAAC 58.881 52.381 0.00 0.00 0.00 2.93
304 353 1.004080 GCAGCAGCTCAGGAACTCA 60.004 57.895 0.00 0.00 34.61 3.41
368 421 2.350134 CAGCTTGCAGGCCAGAGA 59.650 61.111 18.27 0.00 0.00 3.10
369 422 3.441290 GCAGCTTGCAGGCCAGAG 61.441 66.667 18.27 6.50 44.26 3.35
378 431 3.123620 CAGAGACGGGCAGCTTGC 61.124 66.667 0.00 0.00 44.08 4.01
379 432 2.249413 ATCCAGAGACGGGCAGCTTG 62.249 60.000 0.00 0.00 0.00 4.01
380 433 1.965754 GATCCAGAGACGGGCAGCTT 61.966 60.000 0.00 0.00 0.00 3.74
381 434 2.364842 ATCCAGAGACGGGCAGCT 60.365 61.111 0.00 0.00 0.00 4.24
382 435 2.107953 GATCCAGAGACGGGCAGC 59.892 66.667 0.00 0.00 0.00 5.25
383 436 2.415010 CGATCCAGAGACGGGCAG 59.585 66.667 0.00 0.00 0.00 4.85
388 441 1.000827 CTCAATCCCGATCCAGAGACG 60.001 57.143 0.00 0.00 0.00 4.18
401 454 3.015327 ACTCAAAGCAGCATCTCAATCC 58.985 45.455 0.00 0.00 0.00 3.01
425 478 7.624706 TCGATTTTAGAGATAGAATGCGAAC 57.375 36.000 0.00 0.00 0.00 3.95
450 503 2.888534 GAATGGCTTACCGCGCGA 60.889 61.111 34.63 9.90 40.44 5.87
451 504 3.937062 GGAATGGCTTACCGCGCG 61.937 66.667 25.67 25.67 40.44 6.86
452 505 1.928706 TTTGGAATGGCTTACCGCGC 61.929 55.000 0.00 0.00 40.44 6.86
453 506 0.179174 GTTTGGAATGGCTTACCGCG 60.179 55.000 0.00 0.00 40.44 6.46
454 507 0.172578 GGTTTGGAATGGCTTACCGC 59.827 55.000 0.00 0.00 39.70 5.68
455 508 1.540267 TGGTTTGGAATGGCTTACCG 58.460 50.000 0.00 0.00 39.70 4.02
456 509 3.513515 TGATTGGTTTGGAATGGCTTACC 59.486 43.478 0.00 0.00 0.00 2.85
457 510 4.799564 TGATTGGTTTGGAATGGCTTAC 57.200 40.909 0.00 0.00 0.00 2.34
458 511 4.590647 TGTTGATTGGTTTGGAATGGCTTA 59.409 37.500 0.00 0.00 0.00 3.09
459 512 3.390639 TGTTGATTGGTTTGGAATGGCTT 59.609 39.130 0.00 0.00 0.00 4.35
482 535 6.343716 TGGAGAGAATGAGAGATAGAATGC 57.656 41.667 0.00 0.00 0.00 3.56
539 612 8.828644 TCAGAGTGAAGATAACTAATCGAGTAC 58.171 37.037 0.00 0.00 37.44 2.73
564 637 1.684734 TAGCGACCCCCAGGACTTC 60.685 63.158 0.00 0.00 36.73 3.01
576 649 2.436115 GCCAACCAGGGTAGCGAC 60.436 66.667 0.00 0.00 38.09 5.19
680 764 6.913873 TTATCGATTGTAAGTTTGCCCTAC 57.086 37.500 1.71 0.00 0.00 3.18
706 790 2.091885 TCTCTTTGTTTGCCCTGGAGTT 60.092 45.455 0.00 0.00 0.00 3.01
710 794 1.000171 GCTTCTCTTTGTTTGCCCTGG 60.000 52.381 0.00 0.00 0.00 4.45
758 842 5.648092 ACAATTCTCTCCGTAAATGGGAAAG 59.352 40.000 0.00 0.00 32.02 2.62
770 864 7.258441 TCAGTACAAATCTACAATTCTCTCCG 58.742 38.462 0.00 0.00 0.00 4.63
931 1025 2.562296 TGGAGAAAGAATAGGCCCACT 58.438 47.619 0.00 0.00 0.00 4.00
938 1032 3.733337 CCGGTCCATGGAGAAAGAATAG 58.267 50.000 16.81 0.00 0.00 1.73
1011 1105 2.335712 CCCTTGCGGAAGTGGAAGC 61.336 63.158 15.93 0.00 36.13 3.86
1158 1252 4.261072 GGACTACAGATTTCGATAGTCGCA 60.261 45.833 12.93 0.00 42.93 5.10
1451 1549 6.139679 ACTTTGGAGATTAATGAGGGTGAA 57.860 37.500 0.00 0.00 0.00 3.18
1452 1550 5.779241 ACTTTGGAGATTAATGAGGGTGA 57.221 39.130 0.00 0.00 0.00 4.02
1464 1562 6.263168 CCCGAAGCAATTATTACTTTGGAGAT 59.737 38.462 20.53 0.00 44.60 2.75
1885 1983 4.170292 GCAAGCAGCATATCCCTAAATG 57.830 45.455 0.00 0.00 44.79 2.32
1921 2019 1.755200 AGGAACTGGCCCTCCTAAAA 58.245 50.000 14.87 0.00 40.42 1.52
2081 2182 5.299531 AGCTCTAGACGTACAATATCTGCAA 59.700 40.000 0.00 0.00 0.00 4.08
2113 2214 4.765339 GCCCCTATATGATGGTGGTAAAAC 59.235 45.833 0.00 0.00 0.00 2.43
2634 3143 1.648467 GAGCTGCGACACCCCATTTC 61.648 60.000 0.00 0.00 0.00 2.17
2690 3201 2.237143 TCTTGCTGTGTCCCTTGGATAG 59.763 50.000 0.00 0.00 32.73 2.08
2691 3202 2.265367 TCTTGCTGTGTCCCTTGGATA 58.735 47.619 0.00 0.00 32.73 2.59
2811 3323 3.308402 CCTCATGCCCTAAAACTCCAGAA 60.308 47.826 0.00 0.00 0.00 3.02
2868 3380 4.136341 TCCTGTGGGGTTCTAGTTCTAA 57.864 45.455 0.00 0.00 36.25 2.10
2888 3400 7.856145 AGAACCAATATCAGTCAATGTCTTC 57.144 36.000 0.00 0.00 0.00 2.87
3257 3769 7.009174 CCGAAACTTCCATAATTGCATTACAAC 59.991 37.037 0.00 0.00 42.27 3.32
3346 3859 2.615227 ATCTGCAATGGGACTCGGGC 62.615 60.000 0.00 0.00 0.00 6.13
4015 4537 7.160049 TGTACGTATTTAAACAGGATTGTGGA 58.840 34.615 0.00 0.00 37.67 4.02
4111 4633 7.012661 TGATGAGGATTGACATAGTATGCAT 57.987 36.000 10.16 3.79 0.00 3.96
4124 4646 6.446781 ACAGTTTAGCATTGATGAGGATTG 57.553 37.500 0.00 0.00 0.00 2.67
4506 5039 9.254133 CATGGAAATATACGGATATCACTGATC 57.746 37.037 0.00 0.00 0.00 2.92
5161 5695 9.410556 CCATTAAACATTTACAGAAAGGACAAG 57.589 33.333 0.00 0.00 30.84 3.16
5836 6420 6.481954 ACACGAGGATTAATTGTTTCTGAC 57.518 37.500 0.00 0.00 0.00 3.51
6010 6801 6.970484 AGAATGAAACATGTACAACAAGGAC 58.030 36.000 0.00 0.00 0.00 3.85
6239 7061 7.552458 AATCCCAACAAACAAAATCAAGTTC 57.448 32.000 0.00 0.00 0.00 3.01
6481 7303 8.165397 AGTTACATTTGCCTTTTTACCCTACTA 58.835 33.333 0.00 0.00 0.00 1.82
6528 7350 3.507411 ACCTACTCCAGCTACAGTGAAA 58.493 45.455 0.00 0.00 0.00 2.69
6561 7383 3.337409 TATGCTGCACAGGGGGCA 61.337 61.111 3.57 0.00 39.32 5.36
6604 7426 1.953138 GAGATGGCGACTGCATCCG 60.953 63.158 0.00 3.82 45.35 4.18
6688 7528 3.766691 TTCGGGTCTAGTGGCGGC 61.767 66.667 0.00 0.00 0.00 6.53
6691 7531 1.079336 GGTGTTCGGGTCTAGTGGC 60.079 63.158 0.00 0.00 0.00 5.01
6710 7550 0.250727 TGACTACCACAAAGCTGGCC 60.251 55.000 0.00 0.00 34.20 5.36
6728 7568 2.176273 CCCAAAGAGGAGCGCGATG 61.176 63.158 12.10 0.00 41.22 3.84
6732 7572 1.743252 CAGTCCCAAAGAGGAGCGC 60.743 63.158 0.00 0.00 41.22 5.92
6745 7585 1.079266 CTCAGCAGGCAGTCAGTCC 60.079 63.158 0.00 0.00 0.00 3.85
6846 7688 1.968540 GACTTGCTCCTGGTGGCAC 60.969 63.158 9.70 9.70 38.23 5.01
6916 7758 3.070302 CCTTGTCTGGTTAGCCTCTATCC 59.930 52.174 0.00 0.00 35.27 2.59
7397 9512 9.322773 CTTATCACATTATCTATTGGCGATCAT 57.677 33.333 0.00 0.00 0.00 2.45
7478 9593 3.380637 GGCTTAAGGACTCGTGACATCTA 59.619 47.826 4.29 0.00 0.00 1.98
7497 9612 7.124298 TCTCTAATCACTGTATTGTACAAGGCT 59.876 37.037 14.65 0.00 38.38 4.58
7632 9747 9.602568 AGGTTGTTTGTAAAAATAAACCGAATT 57.397 25.926 15.23 2.13 36.83 2.17
7791 9908 8.190784 GGAATTGAAAAGAGAAAACTTGTCTGA 58.809 33.333 0.00 0.00 35.74 3.27
7924 10041 5.991328 TTTTCTCCATAAGATCATCACGC 57.009 39.130 0.00 0.00 32.82 5.34
7943 10060 4.522022 AGCAGCAGCAAACTAGAGAATTTT 59.478 37.500 3.17 0.00 45.49 1.82
7949 10066 1.932511 GCTAGCAGCAGCAAACTAGAG 59.067 52.381 10.63 0.00 45.49 2.43
8170 11152 2.158943 CGGGACAGGTAAGAAGAATCCC 60.159 54.545 0.00 0.00 40.88 3.85
8179 11161 1.305930 GCAAAGGCGGGACAGGTAAG 61.306 60.000 0.00 0.00 0.00 2.34
8182 11164 4.660938 GGCAAAGGCGGGACAGGT 62.661 66.667 0.00 0.00 42.47 4.00
8287 11299 4.021102 AGGGACACTTCAGTTGGTATTG 57.979 45.455 0.00 0.00 0.00 1.90
8332 11344 4.835615 ACCTAGAGCTATACATCAACCAGG 59.164 45.833 0.00 0.00 0.00 4.45
8363 11375 5.757808 ACCAAATGGAATAAACACAAGTTGC 59.242 36.000 6.42 0.00 36.99 4.17
8410 11422 5.455056 ACAGAGATAATGTAACCGCTAGG 57.545 43.478 0.00 0.00 45.13 3.02
8545 11557 4.560035 CCGATTTTCAAATAACAGCAGCAG 59.440 41.667 0.00 0.00 0.00 4.24
8594 11609 2.224137 TGCATGCCAGACTACAGATAGC 60.224 50.000 16.68 0.00 30.75 2.97
8663 11681 1.779061 TTTCCCCTCACTCCCTGTGC 61.779 60.000 0.00 0.00 45.81 4.57
8666 11684 1.068121 AAGTTTCCCCTCACTCCCTG 58.932 55.000 0.00 0.00 0.00 4.45
8688 11707 7.171508 CAGACAGAAGCTGACTATTTGTGTAAA 59.828 37.037 0.82 0.00 34.66 2.01
8703 11722 8.470657 TGAACTATATACATCAGACAGAAGCT 57.529 34.615 0.00 0.00 0.00 3.74
8722 11741 5.775195 TCTTCACTTCTCTGGTGATGAACTA 59.225 40.000 9.05 0.00 41.52 2.24
8723 11742 4.590647 TCTTCACTTCTCTGGTGATGAACT 59.409 41.667 9.05 0.00 41.52 3.01
8741 11765 1.420430 AGTTCCACGGTTCCTCTTCA 58.580 50.000 0.00 0.00 0.00 3.02
8745 11769 2.474410 ATCAAGTTCCACGGTTCCTC 57.526 50.000 0.00 0.00 0.00 3.71
8788 11820 0.908910 AACAGTCGGTATGGCATGGA 59.091 50.000 10.98 1.80 0.00 3.41
8793 11825 1.488261 GCGCTAACAGTCGGTATGGC 61.488 60.000 0.00 0.00 0.00 4.40
8804 11836 3.738791 CGTATACATTGGATGCGCTAACA 59.261 43.478 9.73 1.01 0.00 2.41
8831 11863 3.588955 CCCAAAAAGCTAGACCATTTGC 58.411 45.455 0.00 0.00 31.36 3.68
8832 11864 3.578282 ACCCCAAAAAGCTAGACCATTTG 59.422 43.478 0.00 0.00 0.00 2.32
8833 11865 3.578282 CACCCCAAAAAGCTAGACCATTT 59.422 43.478 0.00 0.00 0.00 2.32
8839 11872 3.904717 TCAAACACCCCAAAAAGCTAGA 58.095 40.909 0.00 0.00 0.00 2.43
8900 11934 9.539194 AAAAGGAATCACAAGGAAAAGATATCT 57.461 29.630 0.00 0.00 0.00 1.98
8927 11961 7.566658 AACAATGGAATTATCCCCTCAAAAA 57.433 32.000 0.00 0.00 45.95 1.94
8928 11962 7.566658 AAACAATGGAATTATCCCCTCAAAA 57.433 32.000 0.00 0.00 45.95 2.44
8929 11963 7.457535 AGAAAACAATGGAATTATCCCCTCAAA 59.542 33.333 0.00 0.00 45.95 2.69
8930 11964 6.959366 AGAAAACAATGGAATTATCCCCTCAA 59.041 34.615 0.00 0.00 45.95 3.02
8931 11965 6.380846 CAGAAAACAATGGAATTATCCCCTCA 59.619 38.462 0.00 0.00 45.95 3.86
8932 11966 6.183360 CCAGAAAACAATGGAATTATCCCCTC 60.183 42.308 0.00 0.00 45.95 4.30
8933 11967 5.662657 CCAGAAAACAATGGAATTATCCCCT 59.337 40.000 0.00 0.00 45.95 4.79
8934 11968 5.660864 TCCAGAAAACAATGGAATTATCCCC 59.339 40.000 0.00 0.00 45.95 4.81
8935 11969 6.790232 TCCAGAAAACAATGGAATTATCCC 57.210 37.500 0.00 0.00 45.95 3.85
8954 11988 5.504010 GCGTACAATCATGTATGGTTTCCAG 60.504 44.000 9.52 0.00 45.33 3.86
8979 12013 1.689813 TGTGTGTAGTCCGGACAACAT 59.310 47.619 35.00 17.84 0.00 2.71
8982 12016 4.020928 ACAATATGTGTGTAGTCCGGACAA 60.021 41.667 35.00 18.13 39.72 3.18
8990 12024 6.032956 TCGAGGAAACAATATGTGTGTAGT 57.967 37.500 0.00 0.00 40.60 2.73
8998 12032 2.289002 GCAGCCTCGAGGAAACAATATG 59.711 50.000 35.69 17.97 37.39 1.78
8999 12033 2.171448 AGCAGCCTCGAGGAAACAATAT 59.829 45.455 35.69 8.53 37.39 1.28
9000 12034 1.555075 AGCAGCCTCGAGGAAACAATA 59.445 47.619 35.69 0.00 37.39 1.90
9001 12035 0.326264 AGCAGCCTCGAGGAAACAAT 59.674 50.000 35.69 11.85 37.39 2.71
9035 12069 2.875933 GCCATCCATCCATGCAAAATTG 59.124 45.455 0.00 0.00 0.00 2.32
9063 12097 5.049612 TGAAGAAGTATCTATCCGCACGTAG 60.050 44.000 0.00 0.00 33.77 3.51
9067 12101 5.189659 ACTGAAGAAGTATCTATCCGCAC 57.810 43.478 0.00 0.00 37.36 5.34
9070 12104 7.976734 ACTTTGAACTGAAGAAGTATCTATCCG 59.023 37.037 0.00 0.00 38.56 4.18
9112 12146 9.515020 CAAGCAAGTATACAACTTTCTTTCAAA 57.485 29.630 5.50 0.00 45.66 2.69
9113 12147 8.682710 ACAAGCAAGTATACAACTTTCTTTCAA 58.317 29.630 5.50 0.00 45.66 2.69
9114 12148 8.220755 ACAAGCAAGTATACAACTTTCTTTCA 57.779 30.769 5.50 0.00 45.66 2.69
9115 12149 9.170584 GAACAAGCAAGTATACAACTTTCTTTC 57.829 33.333 5.50 4.75 45.66 2.62
9116 12150 8.682710 TGAACAAGCAAGTATACAACTTTCTTT 58.317 29.630 5.50 0.00 45.66 2.52
9118 12152 7.801716 TGAACAAGCAAGTATACAACTTTCT 57.198 32.000 5.50 0.00 46.61 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.