Multiple sequence alignment - TraesCS7D01G395000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G395000 chr7D 100.000 3932 0 0 1 3932 509918979 509922910 0.000000e+00 7262
1 TraesCS7D01G395000 chr7D 96.126 413 14 2 1 411 610655222 610654810 0.000000e+00 673
2 TraesCS7D01G395000 chr7B 93.843 3378 141 30 585 3932 538218003 538221343 0.000000e+00 5024
3 TraesCS7D01G395000 chr7A 95.137 2817 109 13 1126 3932 580661861 580664659 0.000000e+00 4418
4 TraesCS7D01G395000 chr7A 96.359 412 14 1 1 411 183836366 183836777 0.000000e+00 676
5 TraesCS7D01G395000 chr3D 96.610 413 12 2 1 411 485198768 485199180 0.000000e+00 684
6 TraesCS7D01G395000 chr3D 95.599 409 15 3 1 407 61077725 61078132 0.000000e+00 652
7 TraesCS7D01G395000 chr2D 95.962 421 12 5 1 417 43290822 43291241 0.000000e+00 678
8 TraesCS7D01G395000 chr2D 95.400 413 16 3 1 411 9754714 9755125 0.000000e+00 654
9 TraesCS7D01G395000 chr5D 95.904 415 15 2 1 413 443061611 443062025 0.000000e+00 671
10 TraesCS7D01G395000 chrUn 95.663 415 17 1 1 414 325812810 325812396 0.000000e+00 665
11 TraesCS7D01G395000 chr1D 95.433 416 17 2 1 414 783359 782944 0.000000e+00 662
12 TraesCS7D01G395000 chr1D 82.237 304 29 15 496 781 62576842 62576546 5.080000e-59 239


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G395000 chr7D 509918979 509922910 3931 False 7262 7262 100.000 1 3932 1 chr7D.!!$F1 3931
1 TraesCS7D01G395000 chr7B 538218003 538221343 3340 False 5024 5024 93.843 585 3932 1 chr7B.!!$F1 3347
2 TraesCS7D01G395000 chr7A 580661861 580664659 2798 False 4418 4418 95.137 1126 3932 1 chr7A.!!$F2 2806

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
377 378 0.030638 CTCGGTGTTGGTTGCTTTGG 59.969 55.0 0.00 0.0 0.00 3.28 F
854 860 0.039165 CAAAAGAACTGGGCCTTCGC 60.039 55.0 4.53 0.0 0.00 4.70 F
855 861 0.467290 AAAAGAACTGGGCCTTCGCA 60.467 50.0 4.53 0.0 36.38 5.10 F
2427 2454 0.035820 TGGTTAAAGAAGGCCGCGAT 60.036 50.0 8.23 0.0 0.00 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2196 2223 0.110238 CAATGTTCCCACACTTCGCG 60.110 55.000 0.00 0.0 35.03 5.87 R
2283 2310 0.971959 GTCCATGATTTGCCAGGCCA 60.972 55.000 9.64 0.0 0.00 5.36 R
2832 2859 6.267242 AGATAGCATCACTGTCTGTATGTGAT 59.733 38.462 0.00 0.0 44.48 3.06 R
3250 3286 1.977854 TGCTTCCTGCTCTCTTTACCA 59.022 47.619 0.00 0.0 43.37 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.675075 CGCGGTTGGGGTTGGAAT 60.675 61.111 0.00 0.00 0.00 3.01
21 22 2.969827 GCGGTTGGGGTTGGAATG 59.030 61.111 0.00 0.00 0.00 2.67
22 23 2.969827 CGGTTGGGGTTGGAATGC 59.030 61.111 0.00 0.00 0.00 3.56
23 24 2.969827 GGTTGGGGTTGGAATGCG 59.030 61.111 0.00 0.00 0.00 4.73
24 25 2.645192 GGTTGGGGTTGGAATGCGG 61.645 63.158 0.00 0.00 0.00 5.69
25 26 2.283532 TTGGGGTTGGAATGCGGG 60.284 61.111 0.00 0.00 0.00 6.13
26 27 2.846497 TTGGGGTTGGAATGCGGGA 61.846 57.895 0.00 0.00 0.00 5.14
27 28 2.440247 GGGGTTGGAATGCGGGAG 60.440 66.667 0.00 0.00 0.00 4.30
28 29 2.674754 GGGTTGGAATGCGGGAGA 59.325 61.111 0.00 0.00 0.00 3.71
29 30 1.001393 GGGTTGGAATGCGGGAGAA 60.001 57.895 0.00 0.00 0.00 2.87
30 31 0.610785 GGGTTGGAATGCGGGAGAAA 60.611 55.000 0.00 0.00 0.00 2.52
31 32 1.474330 GGTTGGAATGCGGGAGAAAT 58.526 50.000 0.00 0.00 0.00 2.17
32 33 1.405463 GGTTGGAATGCGGGAGAAATC 59.595 52.381 0.00 0.00 0.00 2.17
33 34 1.405463 GTTGGAATGCGGGAGAAATCC 59.595 52.381 0.00 0.00 0.00 3.01
34 35 0.106719 TGGAATGCGGGAGAAATCCC 60.107 55.000 3.03 3.03 46.43 3.85
40 41 2.193248 GGGAGAAATCCCTGCCGG 59.807 66.667 6.05 0.00 46.39 6.13
41 42 2.517166 GGAGAAATCCCTGCCGGC 60.517 66.667 22.73 22.73 0.00 6.13
42 43 2.592308 GAGAAATCCCTGCCGGCT 59.408 61.111 29.70 4.49 0.00 5.52
43 44 1.077429 GAGAAATCCCTGCCGGCTT 60.077 57.895 29.70 12.63 0.00 4.35
44 45 1.077429 AGAAATCCCTGCCGGCTTC 60.077 57.895 29.70 20.98 0.00 3.86
45 46 1.378514 GAAATCCCTGCCGGCTTCA 60.379 57.895 29.70 6.34 0.00 3.02
46 47 1.379044 AAATCCCTGCCGGCTTCAG 60.379 57.895 29.70 17.00 0.00 3.02
47 48 4.496336 ATCCCTGCCGGCTTCAGC 62.496 66.667 29.70 0.00 41.14 4.26
81 82 3.443045 CTGCGGGTGCCACCATTC 61.443 66.667 17.22 4.27 41.02 2.67
83 84 4.740822 GCGGGTGCCACCATTCCT 62.741 66.667 17.22 0.00 41.02 3.36
84 85 2.438434 CGGGTGCCACCATTCCTC 60.438 66.667 17.22 0.00 41.02 3.71
85 86 2.043953 GGGTGCCACCATTCCTCC 60.044 66.667 17.22 0.00 41.02 4.30
86 87 2.043953 GGTGCCACCATTCCTCCC 60.044 66.667 9.55 0.00 38.42 4.30
87 88 2.616458 GGTGCCACCATTCCTCCCT 61.616 63.158 9.55 0.00 38.42 4.20
88 89 1.379044 GTGCCACCATTCCTCCCTG 60.379 63.158 0.00 0.00 0.00 4.45
89 90 2.276740 GCCACCATTCCTCCCTGG 59.723 66.667 0.00 0.00 38.55 4.45
90 91 2.308722 GCCACCATTCCTCCCTGGA 61.309 63.158 0.00 0.00 44.51 3.86
102 103 3.706373 CCTGGAGGGTGTCGGTGG 61.706 72.222 0.00 0.00 0.00 4.61
103 104 2.923035 CTGGAGGGTGTCGGTGGT 60.923 66.667 0.00 0.00 0.00 4.16
104 105 1.608336 CTGGAGGGTGTCGGTGGTA 60.608 63.158 0.00 0.00 0.00 3.25
105 106 0.976073 CTGGAGGGTGTCGGTGGTAT 60.976 60.000 0.00 0.00 0.00 2.73
106 107 0.974010 TGGAGGGTGTCGGTGGTATC 60.974 60.000 0.00 0.00 0.00 2.24
107 108 1.683418 GGAGGGTGTCGGTGGTATCC 61.683 65.000 0.00 0.00 0.00 2.59
108 109 0.974010 GAGGGTGTCGGTGGTATCCA 60.974 60.000 0.00 0.00 0.00 3.41
117 118 2.882172 TGGTATCCACCCCCACCT 59.118 61.111 0.00 0.00 45.11 4.00
118 119 1.307517 TGGTATCCACCCCCACCTC 60.308 63.158 0.00 0.00 45.11 3.85
119 120 2.076803 GGTATCCACCCCCACCTCC 61.077 68.421 0.00 0.00 39.11 4.30
120 121 2.076803 GTATCCACCCCCACCTCCC 61.077 68.421 0.00 0.00 0.00 4.30
121 122 2.269040 TATCCACCCCCACCTCCCT 61.269 63.158 0.00 0.00 0.00 4.20
122 123 2.265890 TATCCACCCCCACCTCCCTC 62.266 65.000 0.00 0.00 0.00 4.30
152 153 3.816580 GGAAACCTGAGGACTCGTC 57.183 57.895 4.99 0.00 0.00 4.20
162 163 4.803426 GACTCGTCCGGGCAGCAG 62.803 72.222 6.96 0.12 0.00 4.24
180 181 3.238241 CGTCGTCGGCGTCACATC 61.238 66.667 11.83 0.00 39.49 3.06
181 182 2.879462 GTCGTCGGCGTCACATCC 60.879 66.667 10.18 0.00 39.49 3.51
182 183 4.124351 TCGTCGGCGTCACATCCC 62.124 66.667 10.18 0.00 39.49 3.85
183 184 4.129737 CGTCGGCGTCACATCCCT 62.130 66.667 6.85 0.00 0.00 4.20
184 185 2.264794 GTCGGCGTCACATCCCTT 59.735 61.111 6.85 0.00 0.00 3.95
185 186 1.810030 GTCGGCGTCACATCCCTTC 60.810 63.158 6.85 0.00 0.00 3.46
186 187 1.982395 TCGGCGTCACATCCCTTCT 60.982 57.895 6.85 0.00 0.00 2.85
187 188 1.079127 CGGCGTCACATCCCTTCTT 60.079 57.895 0.00 0.00 0.00 2.52
188 189 1.361668 CGGCGTCACATCCCTTCTTG 61.362 60.000 0.00 0.00 0.00 3.02
189 190 1.026718 GGCGTCACATCCCTTCTTGG 61.027 60.000 0.00 0.00 0.00 3.61
190 191 0.036388 GCGTCACATCCCTTCTTGGA 60.036 55.000 0.00 0.00 39.18 3.53
191 192 2.009042 GCGTCACATCCCTTCTTGGAG 61.009 57.143 0.00 0.00 37.96 3.86
192 193 1.406069 CGTCACATCCCTTCTTGGAGG 60.406 57.143 0.00 0.00 41.89 4.30
195 196 0.329596 ACATCCCTTCTTGGAGGTGC 59.670 55.000 0.00 0.00 46.93 5.01
196 197 0.622665 CATCCCTTCTTGGAGGTGCT 59.377 55.000 0.00 0.00 37.96 4.40
197 198 0.622665 ATCCCTTCTTGGAGGTGCTG 59.377 55.000 0.00 0.00 37.96 4.41
198 199 1.676967 CCCTTCTTGGAGGTGCTGC 60.677 63.158 0.00 0.00 38.35 5.25
199 200 1.377994 CCTTCTTGGAGGTGCTGCT 59.622 57.895 0.00 0.00 38.35 4.24
200 201 0.251077 CCTTCTTGGAGGTGCTGCTT 60.251 55.000 0.00 0.00 38.35 3.91
201 202 0.879765 CTTCTTGGAGGTGCTGCTTG 59.120 55.000 0.00 0.00 0.00 4.01
202 203 0.538057 TTCTTGGAGGTGCTGCTTGG 60.538 55.000 0.00 0.00 0.00 3.61
203 204 1.228367 CTTGGAGGTGCTGCTTGGT 60.228 57.895 0.00 0.00 0.00 3.67
204 205 0.036732 CTTGGAGGTGCTGCTTGGTA 59.963 55.000 0.00 0.00 0.00 3.25
205 206 0.250727 TTGGAGGTGCTGCTTGGTAC 60.251 55.000 0.00 0.00 0.00 3.34
206 207 1.374947 GGAGGTGCTGCTTGGTACA 59.625 57.895 0.00 0.00 0.00 2.90
207 208 0.955919 GGAGGTGCTGCTTGGTACAC 60.956 60.000 0.00 0.00 39.29 2.90
208 209 1.291877 GAGGTGCTGCTTGGTACACG 61.292 60.000 0.00 0.00 39.29 4.49
209 210 2.325082 GGTGCTGCTTGGTACACGG 61.325 63.158 0.00 0.00 39.29 4.94
210 211 2.668212 TGCTGCTTGGTACACGGC 60.668 61.111 0.00 0.00 39.29 5.68
211 212 3.788766 GCTGCTTGGTACACGGCG 61.789 66.667 4.80 4.80 39.29 6.46
212 213 3.118454 CTGCTTGGTACACGGCGG 61.118 66.667 13.24 2.35 39.29 6.13
213 214 3.583276 CTGCTTGGTACACGGCGGA 62.583 63.158 13.24 0.00 43.22 5.54
214 215 2.125269 GCTTGGTACACGGCGGAT 60.125 61.111 13.24 0.09 39.29 4.18
215 216 2.171725 GCTTGGTACACGGCGGATC 61.172 63.158 13.24 0.00 39.29 3.36
216 217 1.876714 CTTGGTACACGGCGGATCG 60.877 63.158 13.24 0.00 39.29 3.69
217 218 3.359515 TTGGTACACGGCGGATCGG 62.360 63.158 13.24 0.00 39.29 4.18
218 219 4.580551 GGTACACGGCGGATCGGG 62.581 72.222 13.24 0.00 39.80 5.14
229 230 3.148279 GATCGGGCCTCGGTCTGT 61.148 66.667 16.74 0.00 45.00 3.41
230 231 3.432051 GATCGGGCCTCGGTCTGTG 62.432 68.421 16.74 0.00 45.00 3.66
233 234 4.394712 GGGCCTCGGTCTGTGGTG 62.395 72.222 0.84 0.00 33.61 4.17
234 235 3.626924 GGCCTCGGTCTGTGGTGT 61.627 66.667 0.00 0.00 33.61 4.16
235 236 2.426023 GCCTCGGTCTGTGGTGTT 59.574 61.111 1.82 0.00 33.61 3.32
236 237 1.227853 GCCTCGGTCTGTGGTGTTT 60.228 57.895 1.82 0.00 33.61 2.83
237 238 0.818040 GCCTCGGTCTGTGGTGTTTT 60.818 55.000 1.82 0.00 33.61 2.43
238 239 1.541670 GCCTCGGTCTGTGGTGTTTTA 60.542 52.381 1.82 0.00 33.61 1.52
239 240 2.874457 GCCTCGGTCTGTGGTGTTTTAT 60.874 50.000 1.82 0.00 33.61 1.40
240 241 3.408634 CCTCGGTCTGTGGTGTTTTATT 58.591 45.455 0.00 0.00 0.00 1.40
241 242 3.818773 CCTCGGTCTGTGGTGTTTTATTT 59.181 43.478 0.00 0.00 0.00 1.40
242 243 4.083484 CCTCGGTCTGTGGTGTTTTATTTC 60.083 45.833 0.00 0.00 0.00 2.17
243 244 3.816523 TCGGTCTGTGGTGTTTTATTTCC 59.183 43.478 0.00 0.00 0.00 3.13
244 245 3.364565 CGGTCTGTGGTGTTTTATTTCCG 60.365 47.826 0.00 0.00 0.00 4.30
245 246 3.057806 GGTCTGTGGTGTTTTATTTCCGG 60.058 47.826 0.00 0.00 0.00 5.14
246 247 3.566742 GTCTGTGGTGTTTTATTTCCGGT 59.433 43.478 0.00 0.00 0.00 5.28
247 248 3.566322 TCTGTGGTGTTTTATTTCCGGTG 59.434 43.478 0.00 0.00 0.00 4.94
248 249 2.623889 TGTGGTGTTTTATTTCCGGTGG 59.376 45.455 0.00 0.00 0.00 4.61
249 250 2.029739 GTGGTGTTTTATTTCCGGTGGG 60.030 50.000 0.00 0.00 0.00 4.61
250 251 1.067425 GGTGTTTTATTTCCGGTGGGC 60.067 52.381 0.00 0.00 0.00 5.36
251 252 0.882474 TGTTTTATTTCCGGTGGGCG 59.118 50.000 0.00 0.00 0.00 6.13
252 253 0.457166 GTTTTATTTCCGGTGGGCGC 60.457 55.000 0.00 0.00 0.00 6.53
253 254 1.596895 TTTTATTTCCGGTGGGCGCC 61.597 55.000 21.18 21.18 0.00 6.53
279 280 4.179579 GGGTCATCCGCGCTTTGC 62.180 66.667 5.56 0.00 41.47 3.68
280 281 4.179579 GGTCATCCGCGCTTTGCC 62.180 66.667 5.56 2.72 42.08 4.52
281 282 3.430862 GTCATCCGCGCTTTGCCA 61.431 61.111 5.56 0.00 42.08 4.92
282 283 2.671276 TCATCCGCGCTTTGCCAA 60.671 55.556 5.56 0.00 42.08 4.52
283 284 2.202518 CATCCGCGCTTTGCCAAG 60.203 61.111 5.56 0.00 42.08 3.61
291 292 2.256461 CTTTGCCAAGCTGCCGTC 59.744 61.111 0.00 0.00 0.00 4.79
292 293 3.599792 CTTTGCCAAGCTGCCGTCG 62.600 63.158 0.00 0.00 0.00 5.12
293 294 4.927782 TTGCCAAGCTGCCGTCGT 62.928 61.111 0.00 0.00 0.00 4.34
294 295 4.927782 TGCCAAGCTGCCGTCGTT 62.928 61.111 0.00 0.00 0.00 3.85
295 296 4.389576 GCCAAGCTGCCGTCGTTG 62.390 66.667 0.00 0.00 0.00 4.10
296 297 3.726517 CCAAGCTGCCGTCGTTGG 61.727 66.667 3.60 3.60 33.85 3.77
305 306 3.560826 CCGTCGTTGGCATTTGTTT 57.439 47.368 0.00 0.00 0.00 2.83
306 307 1.404477 CCGTCGTTGGCATTTGTTTC 58.596 50.000 0.00 0.00 0.00 2.78
307 308 1.001815 CCGTCGTTGGCATTTGTTTCT 60.002 47.619 0.00 0.00 0.00 2.52
308 309 2.542824 CCGTCGTTGGCATTTGTTTCTT 60.543 45.455 0.00 0.00 0.00 2.52
309 310 2.719046 CGTCGTTGGCATTTGTTTCTTC 59.281 45.455 0.00 0.00 0.00 2.87
310 311 3.548014 CGTCGTTGGCATTTGTTTCTTCT 60.548 43.478 0.00 0.00 0.00 2.85
311 312 4.359706 GTCGTTGGCATTTGTTTCTTCTT 58.640 39.130 0.00 0.00 0.00 2.52
312 313 4.441087 GTCGTTGGCATTTGTTTCTTCTTC 59.559 41.667 0.00 0.00 0.00 2.87
313 314 4.338118 TCGTTGGCATTTGTTTCTTCTTCT 59.662 37.500 0.00 0.00 0.00 2.85
314 315 5.043248 CGTTGGCATTTGTTTCTTCTTCTT 58.957 37.500 0.00 0.00 0.00 2.52
315 316 5.519927 CGTTGGCATTTGTTTCTTCTTCTTT 59.480 36.000 0.00 0.00 0.00 2.52
316 317 6.035975 CGTTGGCATTTGTTTCTTCTTCTTTT 59.964 34.615 0.00 0.00 0.00 2.27
317 318 7.412891 CGTTGGCATTTGTTTCTTCTTCTTTTT 60.413 33.333 0.00 0.00 0.00 1.94
318 319 7.538303 TGGCATTTGTTTCTTCTTCTTTTTC 57.462 32.000 0.00 0.00 0.00 2.29
319 320 7.330262 TGGCATTTGTTTCTTCTTCTTTTTCT 58.670 30.769 0.00 0.00 0.00 2.52
320 321 7.492344 TGGCATTTGTTTCTTCTTCTTTTTCTC 59.508 33.333 0.00 0.00 0.00 2.87
321 322 7.708322 GGCATTTGTTTCTTCTTCTTTTTCTCT 59.292 33.333 0.00 0.00 0.00 3.10
322 323 9.091784 GCATTTGTTTCTTCTTCTTTTTCTCTT 57.908 29.630 0.00 0.00 0.00 2.85
324 325 8.986477 TTTGTTTCTTCTTCTTTTTCTCTTGG 57.014 30.769 0.00 0.00 0.00 3.61
325 326 7.703058 TGTTTCTTCTTCTTTTTCTCTTGGT 57.297 32.000 0.00 0.00 0.00 3.67
326 327 7.538575 TGTTTCTTCTTCTTTTTCTCTTGGTG 58.461 34.615 0.00 0.00 0.00 4.17
327 328 7.176690 TGTTTCTTCTTCTTTTTCTCTTGGTGT 59.823 33.333 0.00 0.00 0.00 4.16
328 329 6.683974 TCTTCTTCTTTTTCTCTTGGTGTG 57.316 37.500 0.00 0.00 0.00 3.82
329 330 6.180472 TCTTCTTCTTTTTCTCTTGGTGTGT 58.820 36.000 0.00 0.00 0.00 3.72
330 331 6.659242 TCTTCTTCTTTTTCTCTTGGTGTGTT 59.341 34.615 0.00 0.00 0.00 3.32
331 332 6.194796 TCTTCTTTTTCTCTTGGTGTGTTG 57.805 37.500 0.00 0.00 0.00 3.33
332 333 5.710099 TCTTCTTTTTCTCTTGGTGTGTTGT 59.290 36.000 0.00 0.00 0.00 3.32
333 334 5.309323 TCTTTTTCTCTTGGTGTGTTGTG 57.691 39.130 0.00 0.00 0.00 3.33
334 335 3.502191 TTTTCTCTTGGTGTGTTGTGC 57.498 42.857 0.00 0.00 0.00 4.57
335 336 2.418368 TTCTCTTGGTGTGTTGTGCT 57.582 45.000 0.00 0.00 0.00 4.40
336 337 1.667236 TCTCTTGGTGTGTTGTGCTG 58.333 50.000 0.00 0.00 0.00 4.41
337 338 1.065491 TCTCTTGGTGTGTTGTGCTGT 60.065 47.619 0.00 0.00 0.00 4.40
338 339 1.745087 CTCTTGGTGTGTTGTGCTGTT 59.255 47.619 0.00 0.00 0.00 3.16
339 340 1.742831 TCTTGGTGTGTTGTGCTGTTC 59.257 47.619 0.00 0.00 0.00 3.18
340 341 0.449786 TTGGTGTGTTGTGCTGTTCG 59.550 50.000 0.00 0.00 0.00 3.95
341 342 1.298339 GGTGTGTTGTGCTGTTCGC 60.298 57.895 0.00 0.00 39.77 4.70
342 343 1.298339 GTGTGTTGTGCTGTTCGCC 60.298 57.895 0.00 0.00 38.05 5.54
343 344 1.746991 TGTGTTGTGCTGTTCGCCA 60.747 52.632 0.00 0.00 38.05 5.69
344 345 1.298339 GTGTTGTGCTGTTCGCCAC 60.298 57.895 0.00 0.00 38.05 5.01
345 346 1.746991 TGTTGTGCTGTTCGCCACA 60.747 52.632 0.00 0.00 38.05 4.17
359 360 2.295253 GCCACAGCGTTATCTGTACT 57.705 50.000 0.00 0.00 44.81 2.73
360 361 2.194271 GCCACAGCGTTATCTGTACTC 58.806 52.381 0.00 0.00 44.81 2.59
361 362 2.451132 CCACAGCGTTATCTGTACTCG 58.549 52.381 0.00 0.00 44.81 4.18
362 363 2.451132 CACAGCGTTATCTGTACTCGG 58.549 52.381 0.00 0.00 44.81 4.63
363 364 2.089980 ACAGCGTTATCTGTACTCGGT 58.910 47.619 0.00 0.00 44.77 4.69
364 365 2.451132 CAGCGTTATCTGTACTCGGTG 58.549 52.381 0.00 0.00 41.83 4.94
365 366 2.089980 AGCGTTATCTGTACTCGGTGT 58.910 47.619 0.00 0.00 0.00 4.16
366 367 2.490903 AGCGTTATCTGTACTCGGTGTT 59.509 45.455 0.00 0.00 0.00 3.32
367 368 2.597305 GCGTTATCTGTACTCGGTGTTG 59.403 50.000 0.00 0.00 0.00 3.33
368 369 3.176708 CGTTATCTGTACTCGGTGTTGG 58.823 50.000 0.00 0.00 0.00 3.77
369 370 3.366679 CGTTATCTGTACTCGGTGTTGGT 60.367 47.826 0.00 0.00 0.00 3.67
370 371 4.563061 GTTATCTGTACTCGGTGTTGGTT 58.437 43.478 0.00 0.00 0.00 3.67
371 372 2.519377 TCTGTACTCGGTGTTGGTTG 57.481 50.000 0.00 0.00 0.00 3.77
372 373 0.865769 CTGTACTCGGTGTTGGTTGC 59.134 55.000 0.00 0.00 0.00 4.17
373 374 0.466543 TGTACTCGGTGTTGGTTGCT 59.533 50.000 0.00 0.00 0.00 3.91
374 375 1.134340 TGTACTCGGTGTTGGTTGCTT 60.134 47.619 0.00 0.00 0.00 3.91
375 376 1.944709 GTACTCGGTGTTGGTTGCTTT 59.055 47.619 0.00 0.00 0.00 3.51
376 377 0.738389 ACTCGGTGTTGGTTGCTTTG 59.262 50.000 0.00 0.00 0.00 2.77
377 378 0.030638 CTCGGTGTTGGTTGCTTTGG 59.969 55.000 0.00 0.00 0.00 3.28
378 379 0.394488 TCGGTGTTGGTTGCTTTGGA 60.394 50.000 0.00 0.00 0.00 3.53
379 380 0.457851 CGGTGTTGGTTGCTTTGGAA 59.542 50.000 0.00 0.00 0.00 3.53
380 381 1.068434 CGGTGTTGGTTGCTTTGGAAT 59.932 47.619 0.00 0.00 0.00 3.01
381 382 2.294791 CGGTGTTGGTTGCTTTGGAATA 59.705 45.455 0.00 0.00 0.00 1.75
382 383 3.649073 GGTGTTGGTTGCTTTGGAATAC 58.351 45.455 0.00 0.00 0.00 1.89
383 384 3.068873 GGTGTTGGTTGCTTTGGAATACA 59.931 43.478 0.00 0.00 0.00 2.29
384 385 4.442192 GGTGTTGGTTGCTTTGGAATACAA 60.442 41.667 0.00 0.00 37.28 2.41
385 386 5.112686 GTGTTGGTTGCTTTGGAATACAAA 58.887 37.500 0.00 0.00 46.34 2.83
392 393 1.551452 TTTGGAATACAAAGCGGGGG 58.449 50.000 0.00 0.00 43.81 5.40
416 417 7.694388 GGAAACCCTTTTTCGATAATATTGC 57.306 36.000 0.00 0.00 0.00 3.56
417 418 7.489160 GGAAACCCTTTTTCGATAATATTGCT 58.511 34.615 0.00 0.00 0.00 3.91
418 419 7.979537 GGAAACCCTTTTTCGATAATATTGCTT 59.020 33.333 0.00 0.00 0.00 3.91
419 420 9.366216 GAAACCCTTTTTCGATAATATTGCTTT 57.634 29.630 0.00 0.00 0.00 3.51
420 421 9.719355 AAACCCTTTTTCGATAATATTGCTTTT 57.281 25.926 0.00 0.00 0.00 2.27
421 422 8.926715 ACCCTTTTTCGATAATATTGCTTTTC 57.073 30.769 0.00 0.00 0.00 2.29
422 423 8.749354 ACCCTTTTTCGATAATATTGCTTTTCT 58.251 29.630 0.00 0.00 0.00 2.52
423 424 9.586435 CCCTTTTTCGATAATATTGCTTTTCTT 57.414 29.630 0.00 0.00 0.00 2.52
438 439 7.721286 TGCTTTTCTTTTTGAAGTTTGAACA 57.279 28.000 0.00 0.00 35.89 3.18
439 440 8.321650 TGCTTTTCTTTTTGAAGTTTGAACAT 57.678 26.923 0.00 0.00 35.89 2.71
440 441 8.782144 TGCTTTTCTTTTTGAAGTTTGAACATT 58.218 25.926 0.00 0.00 35.89 2.71
441 442 9.054191 GCTTTTCTTTTTGAAGTTTGAACATTG 57.946 29.630 0.00 0.00 35.89 2.82
442 443 8.947304 TTTTCTTTTTGAAGTTTGAACATTGC 57.053 26.923 0.00 0.00 35.89 3.56
443 444 7.903995 TTCTTTTTGAAGTTTGAACATTGCT 57.096 28.000 0.00 0.00 0.00 3.91
444 445 7.293402 TCTTTTTGAAGTTTGAACATTGCTG 57.707 32.000 0.00 0.00 0.00 4.41
445 446 6.313411 TCTTTTTGAAGTTTGAACATTGCTGG 59.687 34.615 0.00 0.00 0.00 4.85
446 447 4.734398 TTGAAGTTTGAACATTGCTGGT 57.266 36.364 0.00 0.00 0.00 4.00
447 448 4.734398 TGAAGTTTGAACATTGCTGGTT 57.266 36.364 0.00 0.00 0.00 3.67
448 449 4.431809 TGAAGTTTGAACATTGCTGGTTG 58.568 39.130 0.00 0.00 0.00 3.77
449 450 3.457610 AGTTTGAACATTGCTGGTTGG 57.542 42.857 0.00 0.00 0.00 3.77
450 451 1.866601 GTTTGAACATTGCTGGTTGGC 59.133 47.619 0.00 0.00 0.00 4.52
451 452 1.117994 TTGAACATTGCTGGTTGGCA 58.882 45.000 0.00 0.00 40.74 4.92
452 453 0.388659 TGAACATTGCTGGTTGGCAC 59.611 50.000 0.00 0.00 42.27 5.01
453 454 0.319813 GAACATTGCTGGTTGGCACC 60.320 55.000 0.00 0.00 42.27 5.01
467 468 2.961768 CACCATGGTGCCGGTTTC 59.038 61.111 31.13 0.00 39.39 2.78
468 469 2.671619 ACCATGGTGCCGGTTTCG 60.672 61.111 18.99 0.00 28.43 3.46
469 470 2.359354 CCATGGTGCCGGTTTCGA 60.359 61.111 2.57 0.00 39.00 3.71
470 471 1.969064 CCATGGTGCCGGTTTCGAA 60.969 57.895 2.57 0.00 39.00 3.71
471 472 1.519751 CCATGGTGCCGGTTTCGAAA 61.520 55.000 6.47 6.47 39.00 3.46
472 473 0.312416 CATGGTGCCGGTTTCGAAAA 59.688 50.000 13.10 0.00 39.00 2.29
473 474 1.033574 ATGGTGCCGGTTTCGAAAAA 58.966 45.000 13.10 0.00 39.00 1.94
562 563 9.959749 AATTCATTACATTTTACTTTCACACGT 57.040 25.926 0.00 0.00 0.00 4.49
563 564 8.775220 TTCATTACATTTTACTTTCACACGTG 57.225 30.769 15.48 15.48 0.00 4.49
564 565 7.356540 TCATTACATTTTACTTTCACACGTGG 58.643 34.615 21.57 9.11 0.00 4.94
565 566 3.959943 ACATTTTACTTTCACACGTGGC 58.040 40.909 21.57 0.00 0.00 5.01
566 567 3.630312 ACATTTTACTTTCACACGTGGCT 59.370 39.130 21.57 0.00 0.00 4.75
567 568 4.817464 ACATTTTACTTTCACACGTGGCTA 59.183 37.500 21.57 1.12 0.00 3.93
568 569 5.297278 ACATTTTACTTTCACACGTGGCTAA 59.703 36.000 21.57 7.93 0.00 3.09
569 570 5.814764 TTTTACTTTCACACGTGGCTAAA 57.185 34.783 21.57 14.91 0.00 1.85
570 571 5.814764 TTTACTTTCACACGTGGCTAAAA 57.185 34.783 21.57 12.56 0.00 1.52
571 572 5.814764 TTACTTTCACACGTGGCTAAAAA 57.185 34.783 21.57 10.91 0.00 1.94
598 599 9.592196 AGACAAATATGTATATTCAAATGGGCT 57.408 29.630 0.00 0.00 40.74 5.19
600 601 9.146586 ACAAATATGTATATTCAAATGGGCTGT 57.853 29.630 0.00 0.00 38.24 4.40
608 609 9.683069 GTATATTCAAATGGGCTGTAATCTTTG 57.317 33.333 0.00 0.00 0.00 2.77
609 610 6.610075 ATTCAAATGGGCTGTAATCTTTGT 57.390 33.333 0.00 0.00 0.00 2.83
614 615 7.226325 TCAAATGGGCTGTAATCTTTGTTTTTG 59.774 33.333 0.00 0.00 0.00 2.44
685 687 8.405531 CAAAAACAATAATCATGGATCCGTAGT 58.594 33.333 6.04 0.00 0.00 2.73
694 696 5.783111 TCATGGATCCGTAGTGAATACATG 58.217 41.667 6.04 0.00 33.65 3.21
695 697 3.990092 TGGATCCGTAGTGAATACATGC 58.010 45.455 7.39 0.00 33.65 4.06
699 701 5.470098 GGATCCGTAGTGAATACATGCAAAT 59.530 40.000 0.00 0.00 33.65 2.32
702 704 6.781138 TCCGTAGTGAATACATGCAAATTTC 58.219 36.000 0.00 0.00 33.65 2.17
703 705 6.597672 TCCGTAGTGAATACATGCAAATTTCT 59.402 34.615 0.00 0.00 33.65 2.52
850 856 0.537371 CCGTCAAAAGAACTGGGCCT 60.537 55.000 4.53 0.00 0.00 5.19
851 857 1.318576 CGTCAAAAGAACTGGGCCTT 58.681 50.000 4.53 0.00 0.00 4.35
852 858 1.266989 CGTCAAAAGAACTGGGCCTTC 59.733 52.381 4.53 0.38 0.00 3.46
853 859 1.266989 GTCAAAAGAACTGGGCCTTCG 59.733 52.381 4.53 0.00 0.00 3.79
854 860 0.039165 CAAAAGAACTGGGCCTTCGC 60.039 55.000 4.53 0.00 0.00 4.70
855 861 0.467290 AAAAGAACTGGGCCTTCGCA 60.467 50.000 4.53 0.00 36.38 5.10
908 935 4.110036 CAATACTTGGGCCTTGCTTTAC 57.890 45.455 4.53 0.00 0.00 2.01
909 936 3.739401 ATACTTGGGCCTTGCTTTACT 57.261 42.857 4.53 0.00 0.00 2.24
910 937 4.855298 ATACTTGGGCCTTGCTTTACTA 57.145 40.909 4.53 0.00 0.00 1.82
923 950 1.484240 CTTTACTAGCCCAGCTCTGCT 59.516 52.381 11.04 11.04 40.44 4.24
941 968 2.164865 CTCTTCACTCGCCACTGCCT 62.165 60.000 0.00 0.00 0.00 4.75
978 1005 1.680338 AAGAACTCGCCACTGCTTTT 58.320 45.000 0.00 0.00 34.43 2.27
999 1026 1.613925 CCTCCTCGTCTCACTCAAACA 59.386 52.381 0.00 0.00 0.00 2.83
1095 1122 4.803426 CTCCACGCGCACCTCCTC 62.803 72.222 5.73 0.00 0.00 3.71
1140 1167 3.003173 CCACTCCCCTTCGCCTCA 61.003 66.667 0.00 0.00 0.00 3.86
1341 1368 2.516460 TACCGCTCGCTCCTCCTC 60.516 66.667 0.00 0.00 0.00 3.71
1494 1521 3.660111 GCCGCGGTGCACTTTCTT 61.660 61.111 28.70 0.00 0.00 2.52
1636 1663 1.203300 TGGAGGTGTTCTGGAGGATGA 60.203 52.381 0.00 0.00 0.00 2.92
1644 1671 2.151502 TCTGGAGGATGACAGAGGAC 57.848 55.000 0.00 0.00 38.71 3.85
1728 1755 2.114616 GATCTGGAGCTTGGGAAGAGA 58.885 52.381 0.00 0.00 0.00 3.10
1740 1767 3.309296 TGGGAAGAGACTCCATGGATAC 58.691 50.000 16.63 12.29 37.20 2.24
1794 1821 3.004106 GGCTGATGAATGTGCTAATGGAC 59.996 47.826 0.00 0.00 34.96 4.02
1852 1879 4.109050 GTCTGTGTTCGAGAGGATTGATC 58.891 47.826 0.00 0.00 0.00 2.92
1902 1929 7.039082 ACCATGATTGTTGCCTATACAAAGTTT 60.039 33.333 0.00 0.00 38.82 2.66
2130 2157 4.608170 AGAAATGGGTATGTGGGTTCAT 57.392 40.909 0.00 0.00 0.00 2.57
2196 2223 5.643777 AGGCACAAATCTAGTTGACATGTAC 59.356 40.000 0.00 0.00 32.59 2.90
2214 2241 2.244000 CGCGAAGTGTGGGAACATT 58.756 52.632 0.00 0.00 46.14 2.71
2237 2264 3.094572 AGAAGGCCATCCATGTTTTCAG 58.905 45.455 5.01 0.00 33.74 3.02
2240 2267 1.753073 GGCCATCCATGTTTTCAGAGG 59.247 52.381 0.00 0.00 0.00 3.69
2244 2271 4.813027 CCATCCATGTTTTCAGAGGTTTG 58.187 43.478 0.00 0.00 32.82 2.93
2265 2292 0.516877 CGGAGAAAAATGCGCTCACA 59.483 50.000 9.73 0.00 0.00 3.58
2283 2310 4.334552 TCACATGGACAGCAATGTTATGT 58.665 39.130 0.00 6.46 34.81 2.29
2427 2454 0.035820 TGGTTAAAGAAGGCCGCGAT 60.036 50.000 8.23 0.00 0.00 4.58
2608 2635 3.138884 TCTTTGCTTGTAGGATGCACA 57.861 42.857 0.00 0.00 34.59 4.57
3166 3201 0.031449 TGCGCCTTACAAGCCAAAAC 59.969 50.000 4.18 0.00 0.00 2.43
3170 3205 3.389221 CGCCTTACAAGCCAAAACAAAT 58.611 40.909 0.00 0.00 0.00 2.32
3186 3221 9.786105 CCAAAACAAATTTAAGCTTGTCAAAAT 57.214 25.926 9.86 4.09 34.71 1.82
3250 3286 5.006386 CAGTCCTTTGAATTCTGTTAGGCT 58.994 41.667 7.05 0.00 0.00 4.58
3481 3517 7.336931 GGGAAGTTGCAAAAGATGACTCTTATA 59.663 37.037 0.00 0.00 40.93 0.98
3632 3669 9.565090 TCATCAAGAGGGATAAAACAGAATATG 57.435 33.333 0.00 0.00 0.00 1.78
3652 3689 9.404848 GAATATGATATGTCATGGAATGGTGAT 57.595 33.333 14.66 0.00 46.73 3.06
3717 3754 5.163237 ACCTCTAGCCATTAAGCCGAATTTA 60.163 40.000 0.00 0.00 0.00 1.40
3725 3762 6.447162 CCATTAAGCCGAATTTAAATCTCCC 58.553 40.000 0.10 0.00 0.00 4.30
3733 3770 4.451900 GAATTTAAATCTCCCGAGAGCCA 58.548 43.478 0.10 0.00 41.33 4.75
3765 3802 3.128068 ACTTCGTGGTCCAACAAAACTTC 59.872 43.478 0.00 0.00 0.00 3.01
3863 3901 7.107542 AGAATCAGCAAAAACATTTATGCCAT 58.892 30.769 0.00 0.00 39.59 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.675075 ATTCCAACCCCAACCGCG 60.675 61.111 0.00 0.00 0.00 6.46
4 5 2.969827 CATTCCAACCCCAACCGC 59.030 61.111 0.00 0.00 0.00 5.68
5 6 2.969827 GCATTCCAACCCCAACCG 59.030 61.111 0.00 0.00 0.00 4.44
6 7 2.645192 CCGCATTCCAACCCCAACC 61.645 63.158 0.00 0.00 0.00 3.77
7 8 2.645192 CCCGCATTCCAACCCCAAC 61.645 63.158 0.00 0.00 0.00 3.77
8 9 2.283532 CCCGCATTCCAACCCCAA 60.284 61.111 0.00 0.00 0.00 4.12
9 10 3.260888 TCCCGCATTCCAACCCCA 61.261 61.111 0.00 0.00 0.00 4.96
10 11 2.440247 CTCCCGCATTCCAACCCC 60.440 66.667 0.00 0.00 0.00 4.95
11 12 0.610785 TTTCTCCCGCATTCCAACCC 60.611 55.000 0.00 0.00 0.00 4.11
12 13 1.405463 GATTTCTCCCGCATTCCAACC 59.595 52.381 0.00 0.00 0.00 3.77
13 14 1.405463 GGATTTCTCCCGCATTCCAAC 59.595 52.381 0.00 0.00 35.28 3.77
14 15 1.762708 GGATTTCTCCCGCATTCCAA 58.237 50.000 0.00 0.00 35.28 3.53
15 16 3.494850 GGATTTCTCCCGCATTCCA 57.505 52.632 0.00 0.00 35.28 3.53
24 25 2.517166 GCCGGCAGGGATTTCTCC 60.517 66.667 24.80 0.00 41.26 3.71
25 26 1.077429 AAGCCGGCAGGGATTTCTC 60.077 57.895 31.54 0.00 43.35 2.87
26 27 1.077429 GAAGCCGGCAGGGATTTCT 60.077 57.895 31.54 0.00 46.60 2.52
27 28 1.378514 TGAAGCCGGCAGGGATTTC 60.379 57.895 31.54 22.01 46.60 2.17
28 29 1.379044 CTGAAGCCGGCAGGGATTT 60.379 57.895 31.54 13.38 46.60 2.17
30 31 4.496336 GCTGAAGCCGGCAGGGAT 62.496 66.667 31.54 8.98 44.05 3.85
64 65 3.443045 GAATGGTGGCACCCGCAG 61.443 66.667 32.61 0.00 41.24 5.18
66 67 4.740822 AGGAATGGTGGCACCCGC 62.741 66.667 32.61 20.81 37.50 6.13
67 68 2.438434 GAGGAATGGTGGCACCCG 60.438 66.667 32.61 0.00 37.50 5.28
68 69 2.043953 GGAGGAATGGTGGCACCC 60.044 66.667 32.61 17.83 37.50 4.61
69 70 2.043953 GGGAGGAATGGTGGCACC 60.044 66.667 29.75 29.75 39.22 5.01
70 71 1.379044 CAGGGAGGAATGGTGGCAC 60.379 63.158 9.70 9.70 0.00 5.01
71 72 2.615465 CCAGGGAGGAATGGTGGCA 61.615 63.158 0.00 0.00 41.22 4.92
72 73 2.276740 CCAGGGAGGAATGGTGGC 59.723 66.667 0.00 0.00 41.22 5.01
73 74 4.169452 TCCAGGGAGGAATGGTGG 57.831 61.111 0.00 0.00 45.65 4.61
85 86 3.706373 CCACCGACACCCTCCAGG 61.706 72.222 0.00 0.00 43.78 4.45
86 87 0.976073 ATACCACCGACACCCTCCAG 60.976 60.000 0.00 0.00 0.00 3.86
87 88 0.974010 GATACCACCGACACCCTCCA 60.974 60.000 0.00 0.00 0.00 3.86
88 89 1.683418 GGATACCACCGACACCCTCC 61.683 65.000 0.00 0.00 0.00 4.30
89 90 0.974010 TGGATACCACCGACACCCTC 60.974 60.000 0.00 0.00 0.00 4.30
90 91 1.079621 TGGATACCACCGACACCCT 59.920 57.895 0.00 0.00 0.00 4.34
91 92 3.716381 TGGATACCACCGACACCC 58.284 61.111 0.00 0.00 0.00 4.61
101 102 2.076803 GGAGGTGGGGGTGGATACC 61.077 68.421 0.00 0.00 46.76 2.73
102 103 2.076803 GGGAGGTGGGGGTGGATAC 61.077 68.421 0.00 0.00 0.00 2.24
103 104 2.265890 GAGGGAGGTGGGGGTGGATA 62.266 65.000 0.00 0.00 0.00 2.59
104 105 3.637544 AGGGAGGTGGGGGTGGAT 61.638 66.667 0.00 0.00 0.00 3.41
105 106 4.348495 GAGGGAGGTGGGGGTGGA 62.348 72.222 0.00 0.00 0.00 4.02
126 127 3.920093 CTCAGGTTTCCCCGGGCAC 62.920 68.421 17.73 11.28 38.74 5.01
127 128 3.646715 CTCAGGTTTCCCCGGGCA 61.647 66.667 17.73 0.00 38.74 5.36
128 129 4.426313 CCTCAGGTTTCCCCGGGC 62.426 72.222 17.73 0.00 38.74 6.13
129 130 2.609610 TCCTCAGGTTTCCCCGGG 60.610 66.667 15.80 15.80 38.74 5.73
130 131 1.900545 GAGTCCTCAGGTTTCCCCGG 61.901 65.000 0.00 0.00 38.74 5.73
131 132 1.597461 GAGTCCTCAGGTTTCCCCG 59.403 63.158 0.00 0.00 38.74 5.73
132 133 1.192803 ACGAGTCCTCAGGTTTCCCC 61.193 60.000 0.00 0.00 0.00 4.81
133 134 0.246910 GACGAGTCCTCAGGTTTCCC 59.753 60.000 0.00 0.00 0.00 3.97
134 135 0.246910 GGACGAGTCCTCAGGTTTCC 59.753 60.000 14.61 0.00 46.16 3.13
135 136 3.816580 GGACGAGTCCTCAGGTTTC 57.183 57.895 14.61 0.00 46.16 2.78
145 146 4.803426 CTGCTGCCCGGACGAGTC 62.803 72.222 0.73 0.00 0.00 3.36
163 164 3.238241 GATGTGACGCCGACGACG 61.238 66.667 0.85 0.85 43.93 5.12
164 165 2.879462 GGATGTGACGCCGACGAC 60.879 66.667 0.00 0.00 43.93 4.34
165 166 4.124351 GGGATGTGACGCCGACGA 62.124 66.667 0.00 0.00 43.93 4.20
167 168 1.810030 GAAGGGATGTGACGCCGAC 60.810 63.158 0.00 0.00 0.00 4.79
168 169 1.541310 AAGAAGGGATGTGACGCCGA 61.541 55.000 0.00 0.00 0.00 5.54
169 170 1.079127 AAGAAGGGATGTGACGCCG 60.079 57.895 0.00 0.00 0.00 6.46
170 171 1.026718 CCAAGAAGGGATGTGACGCC 61.027 60.000 0.00 0.00 0.00 5.68
171 172 0.036388 TCCAAGAAGGGATGTGACGC 60.036 55.000 0.00 0.00 38.24 5.19
172 173 1.406069 CCTCCAAGAAGGGATGTGACG 60.406 57.143 0.00 0.00 36.09 4.35
173 174 1.630878 ACCTCCAAGAAGGGATGTGAC 59.369 52.381 0.00 0.00 41.04 3.67
174 175 2.044793 ACCTCCAAGAAGGGATGTGA 57.955 50.000 0.00 0.00 41.04 3.58
175 176 2.119801 CACCTCCAAGAAGGGATGTG 57.880 55.000 3.77 3.77 43.79 3.21
176 177 0.329596 GCACCTCCAAGAAGGGATGT 59.670 55.000 0.00 0.00 41.04 3.06
177 178 0.622665 AGCACCTCCAAGAAGGGATG 59.377 55.000 0.00 0.00 41.04 3.51
178 179 0.622665 CAGCACCTCCAAGAAGGGAT 59.377 55.000 0.00 0.00 41.04 3.85
179 180 2.069776 CAGCACCTCCAAGAAGGGA 58.930 57.895 0.00 0.00 41.04 4.20
180 181 1.676967 GCAGCACCTCCAAGAAGGG 60.677 63.158 0.00 0.00 41.04 3.95
181 182 0.251077 AAGCAGCACCTCCAAGAAGG 60.251 55.000 0.00 0.00 42.55 3.46
182 183 0.879765 CAAGCAGCACCTCCAAGAAG 59.120 55.000 0.00 0.00 0.00 2.85
183 184 0.538057 CCAAGCAGCACCTCCAAGAA 60.538 55.000 0.00 0.00 0.00 2.52
184 185 1.073722 CCAAGCAGCACCTCCAAGA 59.926 57.895 0.00 0.00 0.00 3.02
185 186 0.036732 TACCAAGCAGCACCTCCAAG 59.963 55.000 0.00 0.00 0.00 3.61
186 187 0.250727 GTACCAAGCAGCACCTCCAA 60.251 55.000 0.00 0.00 0.00 3.53
187 188 1.374947 GTACCAAGCAGCACCTCCA 59.625 57.895 0.00 0.00 0.00 3.86
188 189 0.955919 GTGTACCAAGCAGCACCTCC 60.956 60.000 0.00 0.00 0.00 4.30
189 190 1.291877 CGTGTACCAAGCAGCACCTC 61.292 60.000 0.00 0.00 0.00 3.85
190 191 1.301716 CGTGTACCAAGCAGCACCT 60.302 57.895 0.00 0.00 0.00 4.00
191 192 2.325082 CCGTGTACCAAGCAGCACC 61.325 63.158 0.00 0.00 0.00 5.01
192 193 2.966309 GCCGTGTACCAAGCAGCAC 61.966 63.158 0.00 0.00 0.00 4.40
193 194 2.668212 GCCGTGTACCAAGCAGCA 60.668 61.111 0.00 0.00 0.00 4.41
194 195 3.788766 CGCCGTGTACCAAGCAGC 61.789 66.667 0.00 0.00 0.00 5.25
195 196 2.852495 ATCCGCCGTGTACCAAGCAG 62.852 60.000 0.00 0.00 0.00 4.24
196 197 2.845752 GATCCGCCGTGTACCAAGCA 62.846 60.000 0.00 0.00 0.00 3.91
197 198 2.125269 ATCCGCCGTGTACCAAGC 60.125 61.111 0.00 0.00 0.00 4.01
198 199 1.876714 CGATCCGCCGTGTACCAAG 60.877 63.158 0.00 0.00 0.00 3.61
199 200 2.182284 CGATCCGCCGTGTACCAA 59.818 61.111 0.00 0.00 0.00 3.67
200 201 3.829044 CCGATCCGCCGTGTACCA 61.829 66.667 0.00 0.00 0.00 3.25
201 202 4.580551 CCCGATCCGCCGTGTACC 62.581 72.222 0.00 0.00 0.00 3.34
211 212 3.917760 CAGACCGAGGCCCGATCC 61.918 72.222 14.30 4.14 41.76 3.36
212 213 3.148279 ACAGACCGAGGCCCGATC 61.148 66.667 14.30 7.48 41.76 3.69
213 214 3.461773 CACAGACCGAGGCCCGAT 61.462 66.667 14.30 0.00 41.76 4.18
216 217 4.394712 CACCACAGACCGAGGCCC 62.395 72.222 0.00 0.00 0.00 5.80
217 218 2.676163 AAACACCACAGACCGAGGCC 62.676 60.000 0.00 0.00 0.00 5.19
218 219 0.818040 AAAACACCACAGACCGAGGC 60.818 55.000 0.00 0.00 0.00 4.70
219 220 2.536761 TAAAACACCACAGACCGAGG 57.463 50.000 0.00 0.00 0.00 4.63
220 221 4.083484 GGAAATAAAACACCACAGACCGAG 60.083 45.833 0.00 0.00 0.00 4.63
221 222 3.816523 GGAAATAAAACACCACAGACCGA 59.183 43.478 0.00 0.00 0.00 4.69
222 223 3.364565 CGGAAATAAAACACCACAGACCG 60.365 47.826 0.00 0.00 0.00 4.79
223 224 3.057806 CCGGAAATAAAACACCACAGACC 60.058 47.826 0.00 0.00 0.00 3.85
224 225 3.566742 ACCGGAAATAAAACACCACAGAC 59.433 43.478 9.46 0.00 0.00 3.51
225 226 3.566322 CACCGGAAATAAAACACCACAGA 59.434 43.478 9.46 0.00 0.00 3.41
226 227 3.305064 CCACCGGAAATAAAACACCACAG 60.305 47.826 9.46 0.00 0.00 3.66
227 228 2.623889 CCACCGGAAATAAAACACCACA 59.376 45.455 9.46 0.00 0.00 4.17
228 229 2.029739 CCCACCGGAAATAAAACACCAC 60.030 50.000 9.46 0.00 0.00 4.16
229 230 2.240279 CCCACCGGAAATAAAACACCA 58.760 47.619 9.46 0.00 0.00 4.17
230 231 1.067425 GCCCACCGGAAATAAAACACC 60.067 52.381 9.46 0.00 0.00 4.16
231 232 1.401800 CGCCCACCGGAAATAAAACAC 60.402 52.381 9.46 0.00 0.00 3.32
232 233 0.882474 CGCCCACCGGAAATAAAACA 59.118 50.000 9.46 0.00 0.00 2.83
233 234 0.457166 GCGCCCACCGGAAATAAAAC 60.457 55.000 9.46 0.00 37.44 2.43
234 235 1.596895 GGCGCCCACCGGAAATAAAA 61.597 55.000 18.11 0.00 37.44 1.52
235 236 2.047443 GGCGCCCACCGGAAATAAA 61.047 57.895 18.11 0.00 37.44 1.40
236 237 2.438795 GGCGCCCACCGGAAATAA 60.439 61.111 18.11 0.00 37.44 1.40
262 263 4.179579 GCAAAGCGCGGATGACCC 62.180 66.667 8.83 0.00 0.00 4.46
263 264 4.179579 GGCAAAGCGCGGATGACC 62.180 66.667 8.83 9.91 43.84 4.02
264 265 2.855728 CTTGGCAAAGCGCGGATGAC 62.856 60.000 8.83 10.99 43.84 3.06
265 266 2.671276 TTGGCAAAGCGCGGATGA 60.671 55.556 8.83 0.00 43.84 2.92
266 267 2.202518 CTTGGCAAAGCGCGGATG 60.203 61.111 8.83 3.48 43.84 3.51
274 275 2.256461 GACGGCAGCTTGGCAAAG 59.744 61.111 0.00 0.00 43.94 2.77
275 276 3.659092 CGACGGCAGCTTGGCAAA 61.659 61.111 0.00 0.00 43.94 3.68
276 277 4.927782 ACGACGGCAGCTTGGCAA 62.928 61.111 0.00 0.00 43.94 4.52
277 278 4.927782 AACGACGGCAGCTTGGCA 62.928 61.111 0.00 0.00 43.94 4.92
278 279 4.389576 CAACGACGGCAGCTTGGC 62.390 66.667 0.00 0.00 39.85 4.52
279 280 3.726517 CCAACGACGGCAGCTTGG 61.727 66.667 0.00 0.00 0.00 3.61
287 288 1.001815 AGAAACAAATGCCAACGACGG 60.002 47.619 0.00 0.00 0.00 4.79
288 289 2.399396 AGAAACAAATGCCAACGACG 57.601 45.000 0.00 0.00 0.00 5.12
289 290 3.964909 AGAAGAAACAAATGCCAACGAC 58.035 40.909 0.00 0.00 0.00 4.34
290 291 4.338118 AGAAGAAGAAACAAATGCCAACGA 59.662 37.500 0.00 0.00 0.00 3.85
291 292 4.610945 AGAAGAAGAAACAAATGCCAACG 58.389 39.130 0.00 0.00 0.00 4.10
292 293 6.908870 AAAGAAGAAGAAACAAATGCCAAC 57.091 33.333 0.00 0.00 0.00 3.77
293 294 7.823799 AGAAAAAGAAGAAGAAACAAATGCCAA 59.176 29.630 0.00 0.00 0.00 4.52
294 295 7.330262 AGAAAAAGAAGAAGAAACAAATGCCA 58.670 30.769 0.00 0.00 0.00 4.92
295 296 7.708322 AGAGAAAAAGAAGAAGAAACAAATGCC 59.292 33.333 0.00 0.00 0.00 4.40
296 297 8.640091 AGAGAAAAAGAAGAAGAAACAAATGC 57.360 30.769 0.00 0.00 0.00 3.56
298 299 9.591792 CCAAGAGAAAAAGAAGAAGAAACAAAT 57.408 29.630 0.00 0.00 0.00 2.32
299 300 8.585018 ACCAAGAGAAAAAGAAGAAGAAACAAA 58.415 29.630 0.00 0.00 0.00 2.83
300 301 8.028938 CACCAAGAGAAAAAGAAGAAGAAACAA 58.971 33.333 0.00 0.00 0.00 2.83
301 302 7.176690 ACACCAAGAGAAAAAGAAGAAGAAACA 59.823 33.333 0.00 0.00 0.00 2.83
302 303 7.486232 CACACCAAGAGAAAAAGAAGAAGAAAC 59.514 37.037 0.00 0.00 0.00 2.78
303 304 7.176690 ACACACCAAGAGAAAAAGAAGAAGAAA 59.823 33.333 0.00 0.00 0.00 2.52
304 305 6.659242 ACACACCAAGAGAAAAAGAAGAAGAA 59.341 34.615 0.00 0.00 0.00 2.52
305 306 6.180472 ACACACCAAGAGAAAAAGAAGAAGA 58.820 36.000 0.00 0.00 0.00 2.87
306 307 6.442513 ACACACCAAGAGAAAAAGAAGAAG 57.557 37.500 0.00 0.00 0.00 2.85
307 308 6.208599 ACAACACACCAAGAGAAAAAGAAGAA 59.791 34.615 0.00 0.00 0.00 2.52
308 309 5.710099 ACAACACACCAAGAGAAAAAGAAGA 59.290 36.000 0.00 0.00 0.00 2.87
309 310 5.801947 CACAACACACCAAGAGAAAAAGAAG 59.198 40.000 0.00 0.00 0.00 2.85
310 311 5.708948 CACAACACACCAAGAGAAAAAGAA 58.291 37.500 0.00 0.00 0.00 2.52
311 312 4.380444 GCACAACACACCAAGAGAAAAAGA 60.380 41.667 0.00 0.00 0.00 2.52
312 313 3.859386 GCACAACACACCAAGAGAAAAAG 59.141 43.478 0.00 0.00 0.00 2.27
313 314 3.509575 AGCACAACACACCAAGAGAAAAA 59.490 39.130 0.00 0.00 0.00 1.94
314 315 3.088532 AGCACAACACACCAAGAGAAAA 58.911 40.909 0.00 0.00 0.00 2.29
315 316 2.423185 CAGCACAACACACCAAGAGAAA 59.577 45.455 0.00 0.00 0.00 2.52
316 317 2.016318 CAGCACAACACACCAAGAGAA 58.984 47.619 0.00 0.00 0.00 2.87
317 318 1.065491 ACAGCACAACACACCAAGAGA 60.065 47.619 0.00 0.00 0.00 3.10
318 319 1.382522 ACAGCACAACACACCAAGAG 58.617 50.000 0.00 0.00 0.00 2.85
319 320 1.742831 GAACAGCACAACACACCAAGA 59.257 47.619 0.00 0.00 0.00 3.02
320 321 1.531677 CGAACAGCACAACACACCAAG 60.532 52.381 0.00 0.00 0.00 3.61
321 322 0.449786 CGAACAGCACAACACACCAA 59.550 50.000 0.00 0.00 0.00 3.67
322 323 2.094060 CGAACAGCACAACACACCA 58.906 52.632 0.00 0.00 0.00 4.17
323 324 4.996113 CGAACAGCACAACACACC 57.004 55.556 0.00 0.00 0.00 4.16
344 345 2.159421 ACACCGAGTACAGATAACGCTG 60.159 50.000 0.00 0.00 41.63 5.18
345 346 2.089980 ACACCGAGTACAGATAACGCT 58.910 47.619 0.00 0.00 0.00 5.07
346 347 2.556534 ACACCGAGTACAGATAACGC 57.443 50.000 0.00 0.00 0.00 4.84
347 348 3.176708 CCAACACCGAGTACAGATAACG 58.823 50.000 0.00 0.00 0.00 3.18
348 349 4.184079 ACCAACACCGAGTACAGATAAC 57.816 45.455 0.00 0.00 0.00 1.89
349 350 4.562082 CAACCAACACCGAGTACAGATAA 58.438 43.478 0.00 0.00 0.00 1.75
350 351 3.615592 GCAACCAACACCGAGTACAGATA 60.616 47.826 0.00 0.00 0.00 1.98
351 352 2.870435 GCAACCAACACCGAGTACAGAT 60.870 50.000 0.00 0.00 0.00 2.90
352 353 1.539496 GCAACCAACACCGAGTACAGA 60.539 52.381 0.00 0.00 0.00 3.41
353 354 0.865769 GCAACCAACACCGAGTACAG 59.134 55.000 0.00 0.00 0.00 2.74
354 355 0.466543 AGCAACCAACACCGAGTACA 59.533 50.000 0.00 0.00 0.00 2.90
355 356 1.589803 AAGCAACCAACACCGAGTAC 58.410 50.000 0.00 0.00 0.00 2.73
356 357 1.944024 CAAAGCAACCAACACCGAGTA 59.056 47.619 0.00 0.00 0.00 2.59
357 358 0.738389 CAAAGCAACCAACACCGAGT 59.262 50.000 0.00 0.00 0.00 4.18
358 359 0.030638 CCAAAGCAACCAACACCGAG 59.969 55.000 0.00 0.00 0.00 4.63
359 360 0.394488 TCCAAAGCAACCAACACCGA 60.394 50.000 0.00 0.00 0.00 4.69
360 361 0.457851 TTCCAAAGCAACCAACACCG 59.542 50.000 0.00 0.00 0.00 4.94
361 362 2.908688 ATTCCAAAGCAACCAACACC 57.091 45.000 0.00 0.00 0.00 4.16
362 363 4.314740 TGTATTCCAAAGCAACCAACAC 57.685 40.909 0.00 0.00 0.00 3.32
363 364 5.344743 TTTGTATTCCAAAGCAACCAACA 57.655 34.783 0.00 0.00 38.12 3.33
373 374 1.551452 CCCCCGCTTTGTATTCCAAA 58.449 50.000 0.00 0.00 40.71 3.28
374 375 3.274601 CCCCCGCTTTGTATTCCAA 57.725 52.632 0.00 0.00 0.00 3.53
391 392 6.700081 GCAATATTATCGAAAAAGGGTTTCCC 59.300 38.462 0.00 0.00 45.90 3.97
392 393 7.489160 AGCAATATTATCGAAAAAGGGTTTCC 58.511 34.615 0.00 0.00 0.00 3.13
393 394 8.926715 AAGCAATATTATCGAAAAAGGGTTTC 57.073 30.769 0.00 0.00 0.00 2.78
394 395 9.719355 AAAAGCAATATTATCGAAAAAGGGTTT 57.281 25.926 0.00 0.00 0.00 3.27
395 396 9.366216 GAAAAGCAATATTATCGAAAAAGGGTT 57.634 29.630 0.00 0.00 0.00 4.11
396 397 8.749354 AGAAAAGCAATATTATCGAAAAAGGGT 58.251 29.630 0.00 0.00 0.00 4.34
397 398 9.586435 AAGAAAAGCAATATTATCGAAAAAGGG 57.414 29.630 0.00 0.00 0.00 3.95
412 413 8.782144 TGTTCAAACTTCAAAAAGAAAAGCAAT 58.218 25.926 0.00 0.00 35.40 3.56
413 414 8.147642 TGTTCAAACTTCAAAAAGAAAAGCAA 57.852 26.923 0.00 0.00 35.40 3.91
414 415 7.721286 TGTTCAAACTTCAAAAAGAAAAGCA 57.279 28.000 0.00 0.00 35.40 3.91
415 416 9.054191 CAATGTTCAAACTTCAAAAAGAAAAGC 57.946 29.630 0.00 0.00 35.40 3.51
416 417 9.054191 GCAATGTTCAAACTTCAAAAAGAAAAG 57.946 29.630 0.00 0.00 35.40 2.27
417 418 8.782144 AGCAATGTTCAAACTTCAAAAAGAAAA 58.218 25.926 0.00 0.00 35.40 2.29
418 419 8.229137 CAGCAATGTTCAAACTTCAAAAAGAAA 58.771 29.630 0.00 0.00 35.40 2.52
419 420 7.148440 CCAGCAATGTTCAAACTTCAAAAAGAA 60.148 33.333 0.00 0.00 36.30 2.52
420 421 6.313411 CCAGCAATGTTCAAACTTCAAAAAGA 59.687 34.615 0.00 0.00 36.30 2.52
421 422 6.092533 ACCAGCAATGTTCAAACTTCAAAAAG 59.907 34.615 0.00 0.00 38.54 2.27
422 423 5.936956 ACCAGCAATGTTCAAACTTCAAAAA 59.063 32.000 0.00 0.00 0.00 1.94
423 424 5.486526 ACCAGCAATGTTCAAACTTCAAAA 58.513 33.333 0.00 0.00 0.00 2.44
424 425 5.083533 ACCAGCAATGTTCAAACTTCAAA 57.916 34.783 0.00 0.00 0.00 2.69
425 426 4.734398 ACCAGCAATGTTCAAACTTCAA 57.266 36.364 0.00 0.00 0.00 2.69
426 427 4.431809 CAACCAGCAATGTTCAAACTTCA 58.568 39.130 0.00 0.00 0.00 3.02
427 428 3.803778 CCAACCAGCAATGTTCAAACTTC 59.196 43.478 0.00 0.00 0.00 3.01
428 429 3.795877 CCAACCAGCAATGTTCAAACTT 58.204 40.909 0.00 0.00 0.00 2.66
429 430 2.483538 GCCAACCAGCAATGTTCAAACT 60.484 45.455 0.00 0.00 0.00 2.66
430 431 1.866601 GCCAACCAGCAATGTTCAAAC 59.133 47.619 0.00 0.00 0.00 2.93
431 432 1.483827 TGCCAACCAGCAATGTTCAAA 59.516 42.857 0.00 0.00 40.56 2.69
432 433 1.117994 TGCCAACCAGCAATGTTCAA 58.882 45.000 0.00 0.00 40.56 2.69
433 434 0.388659 GTGCCAACCAGCAATGTTCA 59.611 50.000 0.00 0.00 46.19 3.18
434 435 0.319813 GGTGCCAACCAGCAATGTTC 60.320 55.000 0.00 0.00 46.19 3.18
435 436 1.747774 GGTGCCAACCAGCAATGTT 59.252 52.632 0.00 0.00 46.19 2.71
436 437 3.458653 GGTGCCAACCAGCAATGT 58.541 55.556 0.00 0.00 46.19 2.71
451 452 2.671619 CGAAACCGGCACCATGGT 60.672 61.111 13.00 13.00 41.20 3.55
452 453 1.519751 TTTCGAAACCGGCACCATGG 61.520 55.000 11.19 11.19 0.00 3.66
453 454 0.312416 TTTTCGAAACCGGCACCATG 59.688 50.000 10.79 0.00 0.00 3.66
454 455 1.033574 TTTTTCGAAACCGGCACCAT 58.966 45.000 10.79 0.00 0.00 3.55
455 456 2.490165 TTTTTCGAAACCGGCACCA 58.510 47.368 10.79 0.00 0.00 4.17
536 537 9.959749 ACGTGTGAAAGTAAAATGTAATGAATT 57.040 25.926 0.00 0.00 0.00 2.17
537 538 9.393249 CACGTGTGAAAGTAAAATGTAATGAAT 57.607 29.630 7.58 0.00 0.00 2.57
538 539 7.858382 CCACGTGTGAAAGTAAAATGTAATGAA 59.142 33.333 15.65 0.00 0.00 2.57
539 540 7.356540 CCACGTGTGAAAGTAAAATGTAATGA 58.643 34.615 15.65 0.00 0.00 2.57
540 541 6.087555 GCCACGTGTGAAAGTAAAATGTAATG 59.912 38.462 15.65 0.00 0.00 1.90
541 542 6.016610 AGCCACGTGTGAAAGTAAAATGTAAT 60.017 34.615 15.65 0.00 0.00 1.89
542 543 5.297278 AGCCACGTGTGAAAGTAAAATGTAA 59.703 36.000 15.65 0.00 0.00 2.41
543 544 4.817464 AGCCACGTGTGAAAGTAAAATGTA 59.183 37.500 15.65 0.00 0.00 2.29
544 545 3.630312 AGCCACGTGTGAAAGTAAAATGT 59.370 39.130 15.65 0.00 0.00 2.71
545 546 4.223320 AGCCACGTGTGAAAGTAAAATG 57.777 40.909 15.65 0.00 0.00 2.32
546 547 6.380095 TTTAGCCACGTGTGAAAGTAAAAT 57.620 33.333 15.65 0.00 0.00 1.82
547 548 5.814764 TTTAGCCACGTGTGAAAGTAAAA 57.185 34.783 15.65 1.01 0.00 1.52
548 549 5.814764 TTTTAGCCACGTGTGAAAGTAAA 57.185 34.783 15.65 6.07 0.00 2.01
549 550 5.814764 TTTTTAGCCACGTGTGAAAGTAA 57.185 34.783 15.65 1.71 0.00 2.24
572 573 9.592196 AGCCCATTTGAATATACATATTTGTCT 57.408 29.630 0.00 0.00 37.28 3.41
573 574 9.630098 CAGCCCATTTGAATATACATATTTGTC 57.370 33.333 0.00 0.00 37.28 3.18
574 575 9.146586 ACAGCCCATTTGAATATACATATTTGT 57.853 29.630 0.00 0.00 39.98 2.83
580 581 9.592196 AAGATTACAGCCCATTTGAATATACAT 57.408 29.630 0.00 0.00 0.00 2.29
581 582 8.995027 AAGATTACAGCCCATTTGAATATACA 57.005 30.769 0.00 0.00 0.00 2.29
582 583 9.683069 CAAAGATTACAGCCCATTTGAATATAC 57.317 33.333 0.00 0.00 31.01 1.47
583 584 9.420118 ACAAAGATTACAGCCCATTTGAATATA 57.580 29.630 2.77 0.00 33.14 0.86
586 587 6.610075 ACAAAGATTACAGCCCATTTGAAT 57.390 33.333 2.77 0.00 33.14 2.57
598 599 4.651503 TCTGGCCCAAAAACAAAGATTACA 59.348 37.500 0.00 0.00 0.00 2.41
600 601 5.878406 TTCTGGCCCAAAAACAAAGATTA 57.122 34.783 0.00 0.00 0.00 1.75
604 605 5.125257 ACAAAATTCTGGCCCAAAAACAAAG 59.875 36.000 0.00 0.00 0.00 2.77
608 609 5.574891 AAACAAAATTCTGGCCCAAAAAC 57.425 34.783 0.00 0.00 0.00 2.43
609 610 6.596309 AAAAACAAAATTCTGGCCCAAAAA 57.404 29.167 0.00 0.00 0.00 1.94
658 660 6.572519 ACGGATCCATGATTATTGTTTTTGG 58.427 36.000 13.41 0.00 0.00 3.28
659 661 8.405531 ACTACGGATCCATGATTATTGTTTTTG 58.594 33.333 13.41 0.00 0.00 2.44
660 662 8.405531 CACTACGGATCCATGATTATTGTTTTT 58.594 33.333 13.41 0.00 0.00 1.94
662 664 7.279615 TCACTACGGATCCATGATTATTGTTT 58.720 34.615 13.41 0.00 0.00 2.83
665 667 7.912056 ATTCACTACGGATCCATGATTATTG 57.088 36.000 13.41 0.00 0.00 1.90
668 670 7.533289 TGTATTCACTACGGATCCATGATTA 57.467 36.000 13.41 7.49 32.61 1.75
670 672 6.401394 CATGTATTCACTACGGATCCATGAT 58.599 40.000 13.41 0.00 32.61 2.45
694 696 7.952339 TCGAAAATAATTCTGCAGAAATTTGC 58.048 30.769 31.55 26.76 44.33 3.68
702 704 9.345517 TCAGAAAAATCGAAAATAATTCTGCAG 57.654 29.630 7.63 7.63 41.09 4.41
703 705 9.689976 TTCAGAAAAATCGAAAATAATTCTGCA 57.310 25.926 15.76 7.78 41.09 4.41
752 758 3.070015 ACCATGGTGCCTTTTCTGAAAAG 59.930 43.478 27.85 27.85 45.78 2.27
756 762 1.619654 CACCATGGTGCCTTTTCTGA 58.380 50.000 31.13 0.00 39.39 3.27
784 790 2.966309 GAAGTTTGTGCGCTCGGGG 61.966 63.158 9.73 0.00 0.00 5.73
853 859 3.363844 GAGGACCTCCAGCGAGTGC 62.364 68.421 10.74 0.00 43.24 4.40
854 860 1.254284 AAGAGGACCTCCAGCGAGTG 61.254 60.000 18.32 0.00 38.89 3.51
855 861 1.077625 AAGAGGACCTCCAGCGAGT 59.922 57.895 18.32 0.00 38.89 4.18
890 917 4.216411 CTAGTAAAGCAAGGCCCAAGTA 57.784 45.455 0.00 0.00 0.00 2.24
891 918 3.073274 CTAGTAAAGCAAGGCCCAAGT 57.927 47.619 0.00 0.00 0.00 3.16
904 931 1.482593 GAGCAGAGCTGGGCTAGTAAA 59.517 52.381 8.59 0.00 39.88 2.01
905 932 1.115467 GAGCAGAGCTGGGCTAGTAA 58.885 55.000 8.59 0.00 39.88 2.24
906 933 0.260230 AGAGCAGAGCTGGGCTAGTA 59.740 55.000 8.59 0.00 39.88 1.82
907 934 0.617249 AAGAGCAGAGCTGGGCTAGT 60.617 55.000 8.59 0.00 39.88 2.57
908 935 0.104671 GAAGAGCAGAGCTGGGCTAG 59.895 60.000 8.59 0.00 39.88 3.42
909 936 0.615827 TGAAGAGCAGAGCTGGGCTA 60.616 55.000 8.59 0.00 39.88 3.93
910 937 1.917282 TGAAGAGCAGAGCTGGGCT 60.917 57.895 8.37 8.37 39.88 5.19
913 940 0.458197 CGAGTGAAGAGCAGAGCTGG 60.458 60.000 0.00 0.00 39.88 4.85
919 946 1.013005 CAGTGGCGAGTGAAGAGCAG 61.013 60.000 0.00 0.00 0.00 4.24
923 950 1.758440 AAGGCAGTGGCGAGTGAAGA 61.758 55.000 11.51 0.00 42.47 2.87
978 1005 1.887198 GTTTGAGTGAGACGAGGAGGA 59.113 52.381 0.00 0.00 0.00 3.71
1095 1122 4.899239 GAGATGAGGCCGGCGGTG 62.899 72.222 28.82 2.73 0.00 4.94
1521 1548 1.911293 TTTGATCGAACAGCCTGCGC 61.911 55.000 0.00 0.00 0.00 6.09
1636 1663 3.374402 CAGCGTCCCGTCCTCTGT 61.374 66.667 0.00 0.00 0.00 3.41
1740 1767 0.247460 TCACTCCATTGCTCTCCACG 59.753 55.000 0.00 0.00 0.00 4.94
1794 1821 1.330213 TCGCCGCATTTGACATACATG 59.670 47.619 0.00 0.00 0.00 3.21
1852 1879 1.520590 CCATGAAACAACCGTTTTGCG 59.479 47.619 0.00 0.00 45.40 4.85
1902 1929 2.190313 GCATCGTCCATCAGCCCA 59.810 61.111 0.00 0.00 0.00 5.36
2051 2078 3.051581 ACCATGGTAATCTCATCAGGCT 58.948 45.455 18.10 0.00 0.00 4.58
2130 2157 1.202211 CGGTGTCGGTCGATGTAATGA 60.202 52.381 0.00 0.00 0.00 2.57
2196 2223 0.110238 CAATGTTCCCACACTTCGCG 60.110 55.000 0.00 0.00 35.03 5.87
2214 2241 2.905415 AAACATGGATGGCCTTCTCA 57.095 45.000 17.48 13.75 34.31 3.27
2237 2264 2.926586 GCATTTTTCTCCGGCAAACCTC 60.927 50.000 0.00 0.00 0.00 3.85
2240 2267 1.059942 CGCATTTTTCTCCGGCAAAC 58.940 50.000 0.00 0.00 0.00 2.93
2244 2271 1.226407 GAGCGCATTTTTCTCCGGC 60.226 57.895 11.47 0.00 0.00 6.13
2265 2292 2.428171 GCCACATAACATTGCTGTCCAT 59.572 45.455 0.00 0.00 33.36 3.41
2283 2310 0.971959 GTCCATGATTTGCCAGGCCA 60.972 55.000 9.64 0.00 0.00 5.36
2608 2635 6.409349 GCCCTTTCACCCAGAGTAATATTACT 60.409 42.308 24.86 24.86 46.11 2.24
2832 2859 6.267242 AGATAGCATCACTGTCTGTATGTGAT 59.733 38.462 0.00 0.00 44.48 3.06
3170 3205 7.772757 ACCAATCCAAATTTTGACAAGCTTAAA 59.227 29.630 10.72 0.00 0.00 1.52
3186 3221 1.545582 GCAGCTAAGCACCAATCCAAA 59.454 47.619 0.00 0.00 0.00 3.28
3250 3286 1.977854 TGCTTCCTGCTCTCTTTACCA 59.022 47.619 0.00 0.00 43.37 3.25
3405 3441 8.886719 TGTATTTGACATTGTCATTTGCAAAAA 58.113 25.926 19.63 6.21 42.40 1.94
3481 3517 6.354130 TCTTACAGTGCTCTTTTGGTTTAGT 58.646 36.000 0.00 0.00 0.00 2.24
3632 3669 6.093219 GTGCTATCACCATTCCATGACATATC 59.907 42.308 0.00 0.00 37.24 1.63
3652 3689 7.549488 GCTATTTTTCCAGACTCTTAAGTGCTA 59.451 37.037 1.63 0.00 35.28 3.49
3654 3691 6.149474 TGCTATTTTTCCAGACTCTTAAGTGC 59.851 38.462 1.63 0.00 35.28 4.40
3717 3754 2.370189 CCTAATGGCTCTCGGGAGATTT 59.630 50.000 18.81 8.23 41.86 2.17
3725 3762 4.681942 CGAAGTATTTCCTAATGGCTCTCG 59.318 45.833 0.00 0.00 0.00 4.04
3733 3770 5.687166 TGGACCACGAAGTATTTCCTAAT 57.313 39.130 0.00 0.00 41.61 1.73
3814 3852 4.068599 TCGACACATGGCTGAATACAAAA 58.931 39.130 0.00 0.00 0.00 2.44
3815 3853 3.669536 TCGACACATGGCTGAATACAAA 58.330 40.909 0.00 0.00 0.00 2.83
3863 3901 5.774690 ACAAAGTAAGGAATCTGATGCCAAA 59.225 36.000 17.06 1.26 0.00 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.