Multiple sequence alignment - TraesCS7D01G394800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G394800 chr7D 100.000 4466 0 0 1 4466 509696784 509701249 0.000000e+00 8248.0
1 TraesCS7D01G394800 chr7D 92.062 1096 83 4 2376 3470 509836741 509835649 0.000000e+00 1539.0
2 TraesCS7D01G394800 chr7D 81.147 907 130 26 2514 3383 42800923 42800021 0.000000e+00 689.0
3 TraesCS7D01G394800 chr7D 97.368 38 0 1 3465 3501 509829359 509829322 3.730000e-06 63.9
4 TraesCS7D01G394800 chr7A 93.376 2687 139 16 892 3559 580657429 580654763 0.000000e+00 3940.0
5 TraesCS7D01G394800 chr7A 80.638 909 131 31 2514 3383 42454630 42453728 0.000000e+00 662.0
6 TraesCS7D01G394800 chr7A 83.273 556 55 14 2934 3485 580650393 580649872 1.120000e-130 477.0
7 TraesCS7D01G394800 chr7A 82.114 369 43 12 560 907 580657812 580657446 1.210000e-75 294.0
8 TraesCS7D01G394800 chr7A 94.410 161 3 4 197 353 580658728 580658570 4.460000e-60 243.0
9 TraesCS7D01G394800 chr7A 95.804 143 2 1 3423 3565 580652642 580652780 1.250000e-55 228.0
10 TraesCS7D01G394800 chr7B 93.455 2628 138 13 892 3497 538208166 538205551 0.000000e+00 3869.0
11 TraesCS7D01G394800 chr7B 92.603 2420 152 10 1064 3474 538125579 538127980 0.000000e+00 3452.0
12 TraesCS7D01G394800 chr7B 88.448 580 65 2 2925 3504 538203619 538203042 0.000000e+00 699.0
13 TraesCS7D01G394800 chr7B 90.780 423 22 8 3624 4035 538128041 538128457 2.350000e-152 549.0
14 TraesCS7D01G394800 chr7B 94.444 126 7 0 4238 4363 538128711 538128836 1.270000e-45 195.0
15 TraesCS7D01G394800 chr7B 90.435 115 10 1 698 812 538208422 538208309 2.780000e-32 150.0
16 TraesCS7D01G394800 chr4A 81.808 907 120 27 2516 3383 650312827 650311927 0.000000e+00 719.0
17 TraesCS7D01G394800 chr4A 79.846 908 136 29 2516 3383 740178757 740179657 1.760000e-173 619.0
18 TraesCS7D01G394800 chr4A 79.626 908 138 28 2516 3383 739762165 739763065 3.820000e-170 608.0
19 TraesCS7D01G394800 chr4A 80.392 102 15 4 3042 3142 465890568 465890471 6.200000e-09 73.1
20 TraesCS7D01G394800 chr3B 80.256 937 139 31 2488 3383 70312257 70313188 0.000000e+00 664.0
21 TraesCS7D01G394800 chr3B 79.021 143 27 1 1073 1215 70310902 70311041 1.320000e-15 95.3
22 TraesCS7D01G394800 chr3A 78.008 773 112 34 2633 3374 56770483 56771228 2.470000e-117 433.0
23 TraesCS7D01G394800 chr3A 80.420 143 25 1 1073 1215 56768467 56768606 6.110000e-19 106.0
24 TraesCS7D01G394800 chr3D 97.990 199 4 0 1 199 380952413 380952215 3.310000e-91 346.0
25 TraesCS7D01G394800 chr3D 98.446 193 3 0 1 193 313910327 313910519 1.540000e-89 340.0
26 TraesCS7D01G394800 chr3D 97.927 193 4 0 1 193 47242500 47242692 7.160000e-88 335.0
27 TraesCS7D01G394800 chr3D 95.545 202 9 0 1 202 431340117 431339916 1.550000e-84 324.0
28 TraesCS7D01G394800 chr2D 97.044 203 5 1 1 203 6106635 6106434 1.540000e-89 340.0
29 TraesCS7D01G394800 chr2D 97.927 193 4 0 1 193 533884150 533883958 7.160000e-88 335.0
30 TraesCS7D01G394800 chr5D 98.429 191 3 0 3 193 268929773 268929583 1.990000e-88 337.0
31 TraesCS7D01G394800 chr5D 97.927 193 4 0 1 193 480474936 480475128 7.160000e-88 335.0
32 TraesCS7D01G394800 chr5D 92.308 39 3 0 3107 3145 72902354 72902316 6.240000e-04 56.5
33 TraesCS7D01G394800 chr6D 96.482 199 7 0 1 199 59189594 59189396 3.330000e-86 329.0
34 TraesCS7D01G394800 chr1A 91.837 49 4 0 3097 3145 541398918 541398870 8.020000e-08 69.4
35 TraesCS7D01G394800 chr1A 100.000 28 0 0 3110 3137 532769618 532769591 8.000000e-03 52.8
36 TraesCS7D01G394800 chr4B 88.000 50 6 0 3106 3155 94766700 94766749 4.820000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G394800 chr7D 509696784 509701249 4465 False 8248.000000 8248 100.000000 1 4466 1 chr7D.!!$F1 4465
1 TraesCS7D01G394800 chr7D 509835649 509836741 1092 True 1539.000000 1539 92.062000 2376 3470 1 chr7D.!!$R3 1094
2 TraesCS7D01G394800 chr7D 42800021 42800923 902 True 689.000000 689 81.147000 2514 3383 1 chr7D.!!$R1 869
3 TraesCS7D01G394800 chr7A 580654763 580658728 3965 True 1492.333333 3940 89.966667 197 3559 3 chr7A.!!$R3 3362
4 TraesCS7D01G394800 chr7A 42453728 42454630 902 True 662.000000 662 80.638000 2514 3383 1 chr7A.!!$R1 869
5 TraesCS7D01G394800 chr7A 580649872 580650393 521 True 477.000000 477 83.273000 2934 3485 1 chr7A.!!$R2 551
6 TraesCS7D01G394800 chr7B 538203042 538208422 5380 True 1572.666667 3869 90.779333 698 3504 3 chr7B.!!$R1 2806
7 TraesCS7D01G394800 chr7B 538125579 538128836 3257 False 1398.666667 3452 92.609000 1064 4363 3 chr7B.!!$F1 3299
8 TraesCS7D01G394800 chr4A 650311927 650312827 900 True 719.000000 719 81.808000 2516 3383 1 chr4A.!!$R2 867
9 TraesCS7D01G394800 chr4A 740178757 740179657 900 False 619.000000 619 79.846000 2516 3383 1 chr4A.!!$F2 867
10 TraesCS7D01G394800 chr4A 739762165 739763065 900 False 608.000000 608 79.626000 2516 3383 1 chr4A.!!$F1 867
11 TraesCS7D01G394800 chr3B 70310902 70313188 2286 False 379.650000 664 79.638500 1073 3383 2 chr3B.!!$F1 2310
12 TraesCS7D01G394800 chr3A 56768467 56771228 2761 False 269.500000 433 79.214000 1073 3374 2 chr3A.!!$F1 2301

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
588 1181 0.173481 GTGCCAGCTCAGTATGTCGA 59.827 55.000 0.00 0.0 37.40 4.20 F
1055 1766 0.107831 TTCCTTGCGGTGCTAAGTGT 59.892 50.000 0.00 0.0 0.00 3.55 F
2137 2875 1.448497 GACGGGGAGAACAACACCA 59.552 57.895 0.00 0.0 0.00 4.17 F
2734 4027 1.152839 CACCACCGGAACCTGGTTT 60.153 57.895 14.28 0.0 38.84 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2490 3246 0.907230 ACAACCCCTGGCTCTCTCTC 60.907 60.0 0.00 0.00 0.00 3.20 R
2734 4027 0.251634 TTGCAGTACCCGATCATGCA 59.748 50.0 0.02 0.02 44.58 3.96 R
3277 4633 0.191064 TCCACCCTCTCCAAGTCTGT 59.809 55.0 0.00 0.00 0.00 3.41 R
4369 6511 0.032515 TCGAAGACTGAGGGCCCATA 60.033 55.0 27.56 11.63 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.829378 GATCCGAAAATTACTAAGTCAGTGT 57.171 36.000 0.00 0.00 38.24 3.55
25 26 7.596749 ATCCGAAAATTACTAAGTCAGTGTG 57.403 36.000 0.00 0.00 38.24 3.82
26 27 5.407387 TCCGAAAATTACTAAGTCAGTGTGC 59.593 40.000 0.00 0.00 38.24 4.57
27 28 5.178623 CCGAAAATTACTAAGTCAGTGTGCA 59.821 40.000 0.00 0.00 38.24 4.57
28 29 6.299604 CGAAAATTACTAAGTCAGTGTGCAG 58.700 40.000 0.00 0.00 38.24 4.41
29 30 5.613358 AAATTACTAAGTCAGTGTGCAGC 57.387 39.130 0.00 0.00 38.24 5.25
30 31 2.347697 TACTAAGTCAGTGTGCAGCG 57.652 50.000 0.00 0.00 38.24 5.18
31 32 0.946221 ACTAAGTCAGTGTGCAGCGC 60.946 55.000 0.00 0.00 35.62 5.92
32 33 1.630244 CTAAGTCAGTGTGCAGCGCC 61.630 60.000 2.29 0.00 0.00 6.53
33 34 2.099652 TAAGTCAGTGTGCAGCGCCT 62.100 55.000 2.29 0.00 0.00 5.52
34 35 3.720193 GTCAGTGTGCAGCGCCTG 61.720 66.667 2.29 14.85 34.12 4.85
35 36 3.927548 TCAGTGTGCAGCGCCTGA 61.928 61.111 18.04 18.04 32.44 3.86
36 37 3.420606 CAGTGTGCAGCGCCTGAG 61.421 66.667 15.59 0.00 32.44 3.35
37 38 3.619767 AGTGTGCAGCGCCTGAGA 61.620 61.111 2.29 0.00 32.44 3.27
38 39 3.117171 GTGTGCAGCGCCTGAGAG 61.117 66.667 2.29 0.00 32.44 3.20
45 46 2.025441 GCGCCTGAGAGCTAGACG 59.975 66.667 0.00 0.00 35.67 4.18
46 47 2.025441 CGCCTGAGAGCTAGACGC 59.975 66.667 0.00 0.00 39.57 5.19
47 48 2.415426 GCCTGAGAGCTAGACGCC 59.585 66.667 0.00 0.00 40.39 5.68
48 49 2.418910 GCCTGAGAGCTAGACGCCA 61.419 63.158 0.00 0.00 40.39 5.69
49 50 1.435515 CCTGAGAGCTAGACGCCAC 59.564 63.158 0.00 0.00 40.39 5.01
50 51 1.315981 CCTGAGAGCTAGACGCCACA 61.316 60.000 0.00 0.00 40.39 4.17
51 52 0.179150 CTGAGAGCTAGACGCCACAC 60.179 60.000 0.00 0.00 40.39 3.82
52 53 0.609406 TGAGAGCTAGACGCCACACT 60.609 55.000 0.00 0.00 40.39 3.55
53 54 1.339727 TGAGAGCTAGACGCCACACTA 60.340 52.381 0.00 0.00 40.39 2.74
54 55 1.950909 GAGAGCTAGACGCCACACTAT 59.049 52.381 0.00 0.00 40.39 2.12
55 56 3.139850 GAGAGCTAGACGCCACACTATA 58.860 50.000 0.00 0.00 40.39 1.31
56 57 2.879646 AGAGCTAGACGCCACACTATAC 59.120 50.000 0.00 0.00 40.39 1.47
57 58 2.617308 GAGCTAGACGCCACACTATACA 59.383 50.000 0.00 0.00 40.39 2.29
58 59 2.619177 AGCTAGACGCCACACTATACAG 59.381 50.000 0.00 0.00 40.39 2.74
59 60 2.358267 GCTAGACGCCACACTATACAGT 59.642 50.000 0.00 0.00 34.42 3.55
70 71 4.148563 CACTATACAGTGTAGCGCCTAG 57.851 50.000 2.29 7.59 46.03 3.02
71 72 2.553172 ACTATACAGTGTAGCGCCTAGC 59.447 50.000 2.29 0.00 38.99 3.42
72 73 3.748027 ACTATACAGTGTAGCGCCTAGCT 60.748 47.826 2.29 0.00 46.39 3.32
73 74 5.572865 ACTATACAGTGTAGCGCCTAGCTC 61.573 50.000 2.29 0.00 43.12 4.09
84 85 1.068250 CCTAGCTCCTAGGCGTTGC 59.932 63.158 2.96 5.87 45.64 4.17
85 86 1.676678 CCTAGCTCCTAGGCGTTGCA 61.677 60.000 2.96 0.00 45.64 4.08
86 87 0.528684 CTAGCTCCTAGGCGTTGCAC 60.529 60.000 2.96 0.00 37.29 4.57
87 88 0.970937 TAGCTCCTAGGCGTTGCACT 60.971 55.000 2.96 0.00 37.29 4.40
88 89 0.970937 AGCTCCTAGGCGTTGCACTA 60.971 55.000 2.96 0.00 37.29 2.74
89 90 0.528684 GCTCCTAGGCGTTGCACTAG 60.529 60.000 2.96 2.78 37.12 2.57
90 91 0.818296 CTCCTAGGCGTTGCACTAGT 59.182 55.000 2.96 0.00 35.93 2.57
91 92 0.530744 TCCTAGGCGTTGCACTAGTG 59.469 55.000 18.93 18.93 35.93 2.74
101 102 2.262603 CACTAGTGCAGCGCCTGA 59.737 61.111 10.54 0.00 32.44 3.86
102 103 1.808799 CACTAGTGCAGCGCCTGAG 60.809 63.158 10.54 0.34 32.44 3.35
103 104 1.979155 ACTAGTGCAGCGCCTGAGA 60.979 57.895 2.29 0.00 32.44 3.27
104 105 1.226916 CTAGTGCAGCGCCTGAGAG 60.227 63.158 2.29 0.00 32.44 3.20
105 106 3.362399 TAGTGCAGCGCCTGAGAGC 62.362 63.158 2.29 0.00 39.42 4.09
114 115 3.150335 CCTGAGAGCTAGGCGCCA 61.150 66.667 31.54 14.00 40.39 5.69
115 116 2.105930 CTGAGAGCTAGGCGCCAC 59.894 66.667 31.54 17.93 40.39 5.01
116 117 3.764810 CTGAGAGCTAGGCGCCACG 62.765 68.421 31.54 19.97 40.39 4.94
117 118 4.577246 GAGAGCTAGGCGCCACGG 62.577 72.222 31.54 18.60 40.39 4.94
122 123 4.514577 CTAGGCGCCACGGGTCAG 62.515 72.222 31.54 9.46 0.00 3.51
133 134 2.746277 GGGTCAGCCGCGTGAAAT 60.746 61.111 4.92 0.00 34.97 2.17
134 135 1.448893 GGGTCAGCCGCGTGAAATA 60.449 57.895 4.92 0.00 34.97 1.40
135 136 1.429148 GGGTCAGCCGCGTGAAATAG 61.429 60.000 4.92 0.00 34.97 1.73
136 137 0.739813 GGTCAGCCGCGTGAAATAGT 60.740 55.000 4.92 0.00 0.00 2.12
137 138 1.076332 GTCAGCCGCGTGAAATAGTT 58.924 50.000 4.92 0.00 0.00 2.24
138 139 1.463444 GTCAGCCGCGTGAAATAGTTT 59.537 47.619 4.92 0.00 0.00 2.66
139 140 1.730064 TCAGCCGCGTGAAATAGTTTC 59.270 47.619 4.92 0.00 40.08 2.78
140 141 1.463056 CAGCCGCGTGAAATAGTTTCA 59.537 47.619 4.92 1.24 46.68 2.69
150 151 5.917541 TGAAATAGTTTCACGGACAGTTC 57.082 39.130 1.24 0.00 44.21 3.01
151 152 5.361427 TGAAATAGTTTCACGGACAGTTCA 58.639 37.500 1.24 0.00 44.21 3.18
152 153 5.995282 TGAAATAGTTTCACGGACAGTTCAT 59.005 36.000 1.24 0.00 44.21 2.57
153 154 6.485313 TGAAATAGTTTCACGGACAGTTCATT 59.515 34.615 1.24 0.00 44.21 2.57
154 155 6.481954 AATAGTTTCACGGACAGTTCATTC 57.518 37.500 0.00 0.00 0.00 2.67
155 156 4.073293 AGTTTCACGGACAGTTCATTCT 57.927 40.909 0.00 0.00 0.00 2.40
156 157 3.809832 AGTTTCACGGACAGTTCATTCTG 59.190 43.478 0.00 0.00 40.80 3.02
158 159 2.754472 TCACGGACAGTTCATTCTGTG 58.246 47.619 4.06 4.48 46.81 3.66
160 161 3.685139 ACGGACAGTTCATTCTGTGAT 57.315 42.857 4.06 0.00 46.81 3.06
161 162 4.008074 ACGGACAGTTCATTCTGTGATT 57.992 40.909 4.06 0.00 46.81 2.57
162 163 4.389374 ACGGACAGTTCATTCTGTGATTT 58.611 39.130 4.06 0.00 46.81 2.17
163 164 4.214119 ACGGACAGTTCATTCTGTGATTTG 59.786 41.667 4.06 0.00 46.81 2.32
164 165 4.452114 CGGACAGTTCATTCTGTGATTTGA 59.548 41.667 4.06 0.00 46.81 2.69
165 166 5.122869 CGGACAGTTCATTCTGTGATTTGAT 59.877 40.000 4.06 0.00 46.81 2.57
166 167 6.348786 CGGACAGTTCATTCTGTGATTTGATT 60.349 38.462 4.06 0.00 46.81 2.57
167 168 7.373493 GGACAGTTCATTCTGTGATTTGATTT 58.627 34.615 4.06 0.00 46.81 2.17
168 169 7.540055 GGACAGTTCATTCTGTGATTTGATTTC 59.460 37.037 4.06 0.00 46.81 2.17
169 170 7.080099 ACAGTTCATTCTGTGATTTGATTTCG 58.920 34.615 0.00 0.00 45.40 3.46
170 171 7.080099 CAGTTCATTCTGTGATTTGATTTCGT 58.920 34.615 0.00 0.00 36.54 3.85
171 172 7.269937 CAGTTCATTCTGTGATTTGATTTCGTC 59.730 37.037 0.00 0.00 36.54 4.20
172 173 7.173907 AGTTCATTCTGTGATTTGATTTCGTCT 59.826 33.333 0.00 0.00 36.54 4.18
173 174 8.443160 GTTCATTCTGTGATTTGATTTCGTCTA 58.557 33.333 0.00 0.00 36.54 2.59
174 175 8.722480 TCATTCTGTGATTTGATTTCGTCTAT 57.278 30.769 0.00 0.00 0.00 1.98
175 176 9.816354 TCATTCTGTGATTTGATTTCGTCTATA 57.184 29.630 0.00 0.00 0.00 1.31
177 178 8.648557 TTCTGTGATTTGATTTCGTCTATAGG 57.351 34.615 0.00 0.00 0.00 2.57
178 179 7.782049 TCTGTGATTTGATTTCGTCTATAGGT 58.218 34.615 0.00 0.00 0.00 3.08
179 180 7.921214 TCTGTGATTTGATTTCGTCTATAGGTC 59.079 37.037 0.00 0.00 0.00 3.85
180 181 7.552459 TGTGATTTGATTTCGTCTATAGGTCA 58.448 34.615 0.00 0.00 0.00 4.02
181 182 8.038351 TGTGATTTGATTTCGTCTATAGGTCAA 58.962 33.333 0.00 0.00 0.00 3.18
182 183 8.879759 GTGATTTGATTTCGTCTATAGGTCAAA 58.120 33.333 0.00 7.93 38.14 2.69
183 184 9.613428 TGATTTGATTTCGTCTATAGGTCAAAT 57.387 29.630 17.06 17.06 43.48 2.32
187 188 8.786826 TGATTTCGTCTATAGGTCAAATTTGT 57.213 30.769 17.47 1.67 0.00 2.83
188 189 8.879759 TGATTTCGTCTATAGGTCAAATTTGTC 58.120 33.333 17.47 12.07 0.00 3.18
189 190 8.786826 ATTTCGTCTATAGGTCAAATTTGTCA 57.213 30.769 17.47 0.00 0.00 3.58
190 191 8.610248 TTTCGTCTATAGGTCAAATTTGTCAA 57.390 30.769 17.47 5.31 0.00 3.18
191 192 8.610248 TTCGTCTATAGGTCAAATTTGTCAAA 57.390 30.769 17.47 0.00 0.00 2.69
192 193 8.786826 TCGTCTATAGGTCAAATTTGTCAAAT 57.213 30.769 17.47 4.91 0.00 2.32
193 194 8.879759 TCGTCTATAGGTCAAATTTGTCAAATC 58.120 33.333 17.47 0.00 0.00 2.17
194 195 8.883731 CGTCTATAGGTCAAATTTGTCAAATCT 58.116 33.333 17.47 6.82 0.00 2.40
242 243 4.771590 TGTTGCTCATGTTTTCCATCTC 57.228 40.909 0.00 0.00 0.00 2.75
275 276 5.172205 GTTTGACTGACTCCTAGCTTAAGG 58.828 45.833 4.29 0.00 38.06 2.69
370 958 2.165641 ACTCAACTCAACTGTCGTGACA 59.834 45.455 2.28 2.28 39.32 3.58
371 959 3.186909 CTCAACTCAACTGTCGTGACAA 58.813 45.455 4.03 0.00 41.33 3.18
410 999 3.810743 GCTAAGATGGTTGGGTTCTGTGT 60.811 47.826 0.00 0.00 0.00 3.72
411 1000 4.564821 GCTAAGATGGTTGGGTTCTGTGTA 60.565 45.833 0.00 0.00 0.00 2.90
418 1007 0.685097 TGGGTTCTGTGTAGTGGAGC 59.315 55.000 0.00 0.00 0.00 4.70
420 1009 0.389948 GGTTCTGTGTAGTGGAGCCG 60.390 60.000 0.00 0.00 0.00 5.52
431 1024 1.043673 GTGGAGCCGGTCTATCAGGT 61.044 60.000 1.90 0.00 33.92 4.00
437 1030 4.510571 GAGCCGGTCTATCAGGTTTTAAA 58.489 43.478 1.90 0.00 33.92 1.52
439 1032 5.123936 AGCCGGTCTATCAGGTTTTAAATC 58.876 41.667 1.90 0.00 33.92 2.17
441 1034 5.681639 CCGGTCTATCAGGTTTTAAATCCT 58.318 41.667 11.40 11.40 33.96 3.24
451 1044 7.741785 TCAGGTTTTAAATCCTAGACTTGACA 58.258 34.615 15.88 0.00 32.26 3.58
459 1052 9.793259 TTAAATCCTAGACTTGACATTGTTTCT 57.207 29.630 0.00 0.00 0.00 2.52
461 1054 9.793259 AAATCCTAGACTTGACATTGTTTCTTA 57.207 29.630 0.00 0.00 0.00 2.10
462 1055 9.965902 AATCCTAGACTTGACATTGTTTCTTAT 57.034 29.630 0.00 0.00 0.00 1.73
493 1086 8.090788 TCTGGATTAATTGTAGGCTTTCTAGT 57.909 34.615 0.00 0.00 0.00 2.57
497 1090 9.998106 GGATTAATTGTAGGCTTTCTAGTGATA 57.002 33.333 0.00 0.00 0.00 2.15
504 1097 7.620880 TGTAGGCTTTCTAGTGATATGTGTTT 58.379 34.615 0.00 0.00 0.00 2.83
506 1099 9.250624 GTAGGCTTTCTAGTGATATGTGTTTAG 57.749 37.037 0.00 0.00 0.00 1.85
507 1100 7.852263 AGGCTTTCTAGTGATATGTGTTTAGT 58.148 34.615 0.00 0.00 0.00 2.24
509 1102 7.764443 GGCTTTCTAGTGATATGTGTTTAGTGA 59.236 37.037 0.00 0.00 0.00 3.41
510 1103 9.151471 GCTTTCTAGTGATATGTGTTTAGTGAA 57.849 33.333 0.00 0.00 0.00 3.18
518 1111 9.944663 GTGATATGTGTTTAGTGAAAGAAAACA 57.055 29.630 0.00 0.00 39.95 2.83
522 1115 8.871686 ATGTGTTTAGTGAAAGAAAACATTCC 57.128 30.769 3.50 0.00 42.97 3.01
523 1116 7.262048 TGTGTTTAGTGAAAGAAAACATTCCC 58.738 34.615 3.50 0.00 42.97 3.97
524 1117 7.123547 TGTGTTTAGTGAAAGAAAACATTCCCT 59.876 33.333 3.50 0.00 42.97 4.20
525 1118 7.979537 GTGTTTAGTGAAAGAAAACATTCCCTT 59.020 33.333 3.50 0.00 42.97 3.95
526 1119 8.194769 TGTTTAGTGAAAGAAAACATTCCCTTC 58.805 33.333 0.00 0.00 37.99 3.46
527 1120 7.889873 TTAGTGAAAGAAAACATTCCCTTCA 57.110 32.000 0.00 0.00 0.00 3.02
528 1121 6.149129 AGTGAAAGAAAACATTCCCTTCAC 57.851 37.500 17.70 17.70 40.70 3.18
529 1122 5.893824 AGTGAAAGAAAACATTCCCTTCACT 59.106 36.000 20.13 20.13 42.98 3.41
530 1123 7.060421 AGTGAAAGAAAACATTCCCTTCACTA 58.940 34.615 22.32 0.00 44.30 2.74
531 1124 7.013369 AGTGAAAGAAAACATTCCCTTCACTAC 59.987 37.037 22.32 7.68 44.30 2.73
532 1125 6.831353 TGAAAGAAAACATTCCCTTCACTACA 59.169 34.615 0.00 0.00 0.00 2.74
533 1126 7.340743 TGAAAGAAAACATTCCCTTCACTACAA 59.659 33.333 0.00 0.00 0.00 2.41
534 1127 6.884280 AGAAAACATTCCCTTCACTACAAG 57.116 37.500 0.00 0.00 0.00 3.16
535 1128 5.770162 AGAAAACATTCCCTTCACTACAAGG 59.230 40.000 0.00 0.00 42.57 3.61
536 1129 4.724279 AACATTCCCTTCACTACAAGGT 57.276 40.909 0.00 0.00 41.48 3.50
537 1130 4.724279 ACATTCCCTTCACTACAAGGTT 57.276 40.909 0.00 0.00 41.48 3.50
538 1131 5.061721 ACATTCCCTTCACTACAAGGTTT 57.938 39.130 0.00 0.00 41.48 3.27
539 1132 5.454966 ACATTCCCTTCACTACAAGGTTTT 58.545 37.500 0.00 0.00 41.48 2.43
540 1133 5.897250 ACATTCCCTTCACTACAAGGTTTTT 59.103 36.000 0.00 0.00 41.48 1.94
541 1134 7.064229 ACATTCCCTTCACTACAAGGTTTTTA 58.936 34.615 0.00 0.00 41.48 1.52
542 1135 7.728532 ACATTCCCTTCACTACAAGGTTTTTAT 59.271 33.333 0.00 0.00 41.48 1.40
543 1136 7.519032 TTCCCTTCACTACAAGGTTTTTATG 57.481 36.000 0.00 0.00 41.48 1.90
544 1137 6.843752 TCCCTTCACTACAAGGTTTTTATGA 58.156 36.000 0.00 0.00 41.48 2.15
545 1138 6.713450 TCCCTTCACTACAAGGTTTTTATGAC 59.287 38.462 0.00 0.00 41.48 3.06
546 1139 6.348213 CCCTTCACTACAAGGTTTTTATGACG 60.348 42.308 0.00 0.00 41.48 4.35
547 1140 6.425721 CCTTCACTACAAGGTTTTTATGACGA 59.574 38.462 0.00 0.00 38.58 4.20
548 1141 6.774354 TCACTACAAGGTTTTTATGACGAC 57.226 37.500 0.00 0.00 0.00 4.34
549 1142 6.518493 TCACTACAAGGTTTTTATGACGACT 58.482 36.000 0.00 0.00 0.00 4.18
550 1143 6.987992 TCACTACAAGGTTTTTATGACGACTT 59.012 34.615 0.00 0.00 0.00 3.01
551 1144 7.170320 TCACTACAAGGTTTTTATGACGACTTC 59.830 37.037 0.00 0.00 0.00 3.01
552 1145 5.338614 ACAAGGTTTTTATGACGACTTCG 57.661 39.130 0.00 0.00 46.33 3.79
576 1169 6.589454 GTTAATTTTAACATGTTGTGCCAGC 58.411 36.000 21.42 2.03 41.93 4.85
584 1177 1.812235 TGTTGTGCCAGCTCAGTATG 58.188 50.000 0.00 0.00 37.54 2.39
588 1181 0.173481 GTGCCAGCTCAGTATGTCGA 59.827 55.000 0.00 0.00 37.40 4.20
590 1183 1.275010 TGCCAGCTCAGTATGTCGAAA 59.725 47.619 0.00 0.00 37.40 3.46
594 1187 3.935203 CCAGCTCAGTATGTCGAAATTGT 59.065 43.478 0.00 0.00 37.40 2.71
600 1193 6.961554 GCTCAGTATGTCGAAATTGTTTTAGG 59.038 38.462 0.00 0.00 37.40 2.69
602 1195 6.373216 TCAGTATGTCGAAATTGTTTTAGGGG 59.627 38.462 0.00 0.00 37.40 4.79
603 1196 3.926821 TGTCGAAATTGTTTTAGGGGC 57.073 42.857 0.00 0.00 0.00 5.80
607 1200 4.022676 GTCGAAATTGTTTTAGGGGCAGAA 60.023 41.667 0.00 0.00 0.00 3.02
608 1201 4.770010 TCGAAATTGTTTTAGGGGCAGAAT 59.230 37.500 0.00 0.00 0.00 2.40
624 1217 2.984471 CAGAATGCATGTGCTTGTGTTC 59.016 45.455 0.00 0.00 42.66 3.18
628 1221 3.557577 TGCATGTGCTTGTGTTCATAC 57.442 42.857 6.55 0.00 42.66 2.39
630 1223 3.058085 TGCATGTGCTTGTGTTCATACAG 60.058 43.478 6.55 0.00 42.66 2.74
631 1224 3.495193 CATGTGCTTGTGTTCATACAGC 58.505 45.455 0.00 0.00 34.24 4.40
639 1232 4.864704 TGTGTTCATACAGCTGAGTGTA 57.135 40.909 23.35 9.37 37.32 2.90
649 1242 5.152623 ACAGCTGAGTGTATGTGTATGTT 57.847 39.130 23.35 0.00 0.00 2.71
651 1244 6.697395 ACAGCTGAGTGTATGTGTATGTTTA 58.303 36.000 23.35 0.00 0.00 2.01
657 1250 7.327214 TGAGTGTATGTGTATGTTTATGAGCA 58.673 34.615 0.00 0.00 0.00 4.26
663 1256 7.643528 ATGTGTATGTTTATGAGCATCTACG 57.356 36.000 0.00 0.00 34.92 3.51
666 1259 7.926018 TGTGTATGTTTATGAGCATCTACGATT 59.074 33.333 0.00 0.00 34.92 3.34
672 1265 9.626045 TGTTTATGAGCATCTACGATTATACTG 57.374 33.333 0.00 0.00 34.92 2.74
677 1270 7.489160 TGAGCATCTACGATTATACTGTGTTT 58.511 34.615 0.00 0.00 34.92 2.83
717 1321 3.428589 CGACCCCGTCTAAGAAACTTAGG 60.429 52.174 15.46 5.76 0.00 2.69
728 1332 7.171167 GTCTAAGAAACTTAGGTGTGGTCTTTC 59.829 40.741 15.46 0.00 31.68 2.62
731 1335 6.760291 AGAAACTTAGGTGTGGTCTTTCTAG 58.240 40.000 0.00 0.00 0.00 2.43
770 1374 1.444553 CGACCTCGTCCAAGACAGC 60.445 63.158 0.00 0.00 32.09 4.40
771 1375 1.666011 GACCTCGTCCAAGACAGCA 59.334 57.895 0.00 0.00 32.09 4.41
772 1376 0.389166 GACCTCGTCCAAGACAGCAG 60.389 60.000 0.00 0.00 32.09 4.24
781 1395 2.303022 TCCAAGACAGCAGAGGTTAAGG 59.697 50.000 0.00 0.00 0.00 2.69
786 1400 1.271597 ACAGCAGAGGTTAAGGGCAAG 60.272 52.381 0.00 0.00 0.00 4.01
797 1411 4.636206 GGTTAAGGGCAAGTAAGTGATCAG 59.364 45.833 0.00 0.00 0.00 2.90
840 1454 2.287909 GCCCGTGCATTAAACAAGTTCA 60.288 45.455 0.00 0.00 37.47 3.18
860 1474 1.338200 ACTTTCCGCTGCTGAGGTTAG 60.338 52.381 12.88 12.75 34.59 2.34
944 1648 1.338136 AATGGGCCCGAGTCAGTAGG 61.338 60.000 19.37 0.00 0.00 3.18
945 1649 2.363925 GGGCCCGAGTCAGTAGGT 60.364 66.667 5.69 0.00 0.00 3.08
947 1651 0.685458 GGGCCCGAGTCAGTAGGTTA 60.685 60.000 5.69 0.00 0.00 2.85
948 1652 0.745468 GGCCCGAGTCAGTAGGTTAG 59.255 60.000 0.00 0.00 0.00 2.34
952 1656 3.635836 GCCCGAGTCAGTAGGTTAGTATT 59.364 47.826 0.00 0.00 0.00 1.89
953 1657 4.823989 GCCCGAGTCAGTAGGTTAGTATTA 59.176 45.833 0.00 0.00 0.00 0.98
958 1669 7.148606 CCGAGTCAGTAGGTTAGTATTAGATCG 60.149 44.444 0.00 0.00 0.00 3.69
976 1687 0.795085 CGAACTCCTTCTGCTTGCTG 59.205 55.000 0.00 0.00 0.00 4.41
1055 1766 0.107831 TTCCTTGCGGTGCTAAGTGT 59.892 50.000 0.00 0.00 0.00 3.55
1427 2144 4.247380 GCCGATCCCCAGCCTCAG 62.247 72.222 0.00 0.00 0.00 3.35
1764 2484 2.029964 GTGGCCTTCGACGACCAA 59.970 61.111 3.32 0.00 33.03 3.67
2137 2875 1.448497 GACGGGGAGAACAACACCA 59.552 57.895 0.00 0.00 0.00 4.17
2147 2885 4.056050 GAGAACAACACCAACGAGTACAT 58.944 43.478 0.00 0.00 0.00 2.29
2211 2949 1.567504 ACAAGAAGTTCACGTCGGTG 58.432 50.000 5.50 0.00 45.78 4.94
2490 3246 2.223805 GCACCACCTGACCAAAAAGAAG 60.224 50.000 0.00 0.00 0.00 2.85
2602 3364 4.327885 GCTTCGGCGAGGTCTATG 57.672 61.111 20.34 2.96 0.00 2.23
2734 4027 1.152839 CACCACCGGAACCTGGTTT 60.153 57.895 14.28 0.00 38.84 3.27
2767 4060 1.272092 ACTGCAAGGAAGGCAAGCATA 60.272 47.619 0.00 0.00 41.39 3.14
2820 4113 1.448013 GCTACGCGGCTTCCTCTTT 60.448 57.895 12.47 0.00 0.00 2.52
3040 4344 3.618171 ACCACGGTGACCAACATAC 57.382 52.632 10.28 0.00 0.00 2.39
3084 4388 2.811317 GAGTGGTTCCGCAGCGAG 60.811 66.667 18.75 6.66 0.00 5.03
3277 4633 3.729698 ACGACGACGATGCGGTGA 61.730 61.111 15.32 0.00 42.66 4.02
3279 4635 2.126618 GACGACGATGCGGTGACA 60.127 61.111 0.00 0.00 35.12 3.58
3395 4751 4.874977 GGAGAGCGCGGTGGCTAC 62.875 72.222 18.92 4.06 44.93 3.58
3411 4768 3.942377 TACGGCCGAGGTGCTACCA 62.942 63.158 35.90 0.00 41.95 3.25
3439 4796 2.496070 CCCTCTTGTTACATGGACTCGA 59.504 50.000 0.00 0.00 0.00 4.04
3461 4818 2.670414 CTCCTTTGATCGTGTCTTCTGC 59.330 50.000 0.00 0.00 0.00 4.26
3497 4854 3.383546 GCATCGAGCACAACGATTTTA 57.616 42.857 0.00 0.00 46.06 1.52
3499 4856 4.342772 GCATCGAGCACAACGATTTTATT 58.657 39.130 0.00 0.00 46.06 1.40
3501 4858 5.963004 GCATCGAGCACAACGATTTTATTTA 59.037 36.000 0.00 0.00 46.06 1.40
3504 4861 9.009327 CATCGAGCACAACGATTTTATTTATTT 57.991 29.630 0.00 0.00 46.06 1.40
3565 4922 3.588842 TCCAACAACCATCCATCTCTTCT 59.411 43.478 0.00 0.00 0.00 2.85
3567 4924 4.768968 CCAACAACCATCCATCTCTTCTTT 59.231 41.667 0.00 0.00 0.00 2.52
3568 4925 5.105997 CCAACAACCATCCATCTCTTCTTTC 60.106 44.000 0.00 0.00 0.00 2.62
3572 4929 6.723052 ACAACCATCCATCTCTTCTTTCAAAT 59.277 34.615 0.00 0.00 0.00 2.32
3573 4930 7.094032 ACAACCATCCATCTCTTCTTTCAAATC 60.094 37.037 0.00 0.00 0.00 2.17
3575 4932 7.180663 ACCATCCATCTCTTCTTTCAAATCTT 58.819 34.615 0.00 0.00 0.00 2.40
3576 4933 7.673082 ACCATCCATCTCTTCTTTCAAATCTTT 59.327 33.333 0.00 0.00 0.00 2.52
3577 4934 8.529476 CCATCCATCTCTTCTTTCAAATCTTTT 58.471 33.333 0.00 0.00 0.00 2.27
3578 4935 9.924650 CATCCATCTCTTCTTTCAAATCTTTTT 57.075 29.630 0.00 0.00 0.00 1.94
3601 4958 4.561735 TTTTGCGGGTAAGTCTTCTTTG 57.438 40.909 0.00 0.00 35.36 2.77
3602 4959 3.478857 TTGCGGGTAAGTCTTCTTTGA 57.521 42.857 0.00 0.00 35.36 2.69
3603 4960 3.478857 TGCGGGTAAGTCTTCTTTGAA 57.521 42.857 0.00 0.00 35.36 2.69
3604 4961 3.811083 TGCGGGTAAGTCTTCTTTGAAA 58.189 40.909 0.00 0.00 35.36 2.69
3605 4962 4.394729 TGCGGGTAAGTCTTCTTTGAAAT 58.605 39.130 0.00 0.00 35.36 2.17
3609 4966 6.603095 CGGGTAAGTCTTCTTTGAAATCTTG 58.397 40.000 0.00 0.00 35.36 3.02
3610 4967 6.426937 CGGGTAAGTCTTCTTTGAAATCTTGA 59.573 38.462 0.00 0.00 35.36 3.02
3611 4968 7.041372 CGGGTAAGTCTTCTTTGAAATCTTGAA 60.041 37.037 0.00 0.00 35.36 2.69
3612 4969 8.076781 GGGTAAGTCTTCTTTGAAATCTTGAAC 58.923 37.037 0.00 0.00 35.36 3.18
3613 4970 8.621286 GGTAAGTCTTCTTTGAAATCTTGAACA 58.379 33.333 0.00 0.00 35.36 3.18
3616 4973 8.055279 AGTCTTCTTTGAAATCTTGAACAACA 57.945 30.769 0.00 0.00 0.00 3.33
3617 4974 8.522830 AGTCTTCTTTGAAATCTTGAACAACAA 58.477 29.630 0.00 0.00 36.97 2.83
3618 4975 9.139174 GTCTTCTTTGAAATCTTGAACAACAAA 57.861 29.630 0.00 0.00 38.08 2.83
3619 4976 9.357652 TCTTCTTTGAAATCTTGAACAACAAAG 57.642 29.630 15.16 15.16 41.86 2.77
3620 4977 9.143631 CTTCTTTGAAATCTTGAACAACAAAGT 57.856 29.630 18.06 0.00 41.50 2.66
3621 4978 8.464770 TCTTTGAAATCTTGAACAACAAAGTG 57.535 30.769 18.06 5.05 41.50 3.16
3622 4979 7.545265 TCTTTGAAATCTTGAACAACAAAGTGG 59.455 33.333 18.06 4.60 41.50 4.00
3645 5002 2.408050 GATATGAGCAACCGTAGCCTG 58.592 52.381 0.00 0.00 0.00 4.85
3685 5042 5.689383 TGTGCAATCTACTCTTTTGGTTC 57.311 39.130 0.00 0.00 0.00 3.62
3793 5151 8.438676 AACTAGCTTCACATATATTTCACACC 57.561 34.615 0.00 0.00 0.00 4.16
3818 5178 6.790232 TTTTTCCAAGATGTCTTCAACCTT 57.210 33.333 0.00 0.00 33.11 3.50
3821 5181 7.889873 TTTCCAAGATGTCTTCAACCTTAAA 57.110 32.000 0.00 0.00 33.11 1.52
3823 5183 5.468746 TCCAAGATGTCTTCAACCTTAAACG 59.531 40.000 0.00 0.00 33.11 3.60
3827 5187 6.956047 AGATGTCTTCAACCTTAAACGTTTC 58.044 36.000 18.42 0.00 0.00 2.78
3887 5247 6.789262 ACTCTCTGAACATTGTTTCAAGTTG 58.211 36.000 3.08 0.00 35.07 3.16
3902 5262 1.297598 GTTGGACGTGCGCATATGC 60.298 57.895 15.91 18.08 37.78 3.14
3928 5288 0.680618 CTGGCCTTTTGTGCATGGAA 59.319 50.000 3.32 0.00 0.00 3.53
3934 5294 3.928375 GCCTTTTGTGCATGGAAATGTAG 59.072 43.478 0.00 0.00 0.00 2.74
3984 5591 2.022195 CATGCAGGATGAACTTGAGGG 58.978 52.381 0.00 0.00 39.69 4.30
4054 6114 0.803117 CTGGTCATTCAGTGCAGCTG 59.197 55.000 10.11 10.11 46.34 4.24
4124 6208 2.033602 GTACCCAAGCCGGCAAGT 59.966 61.111 31.54 21.25 0.00 3.16
4129 6213 3.365265 CAAGCCGGCAAGTGGGAC 61.365 66.667 31.54 0.00 0.00 4.46
4176 6287 0.550914 TTGGTTGGAGCTGGTCAAGT 59.449 50.000 9.30 0.00 0.00 3.16
4210 6321 2.495366 TTCGGGGTTGACGATGGTCG 62.495 60.000 3.26 0.00 46.49 4.79
4215 6326 4.365505 TTGACGATGGTCGCGGCA 62.366 61.111 14.93 0.00 46.45 5.69
4220 6331 3.630148 GATGGTCGCGGCACATCG 61.630 66.667 20.81 0.00 32.65 3.84
4249 6360 4.742201 CCTGTCGCCGGTCAGTGG 62.742 72.222 17.29 6.61 0.00 4.00
4369 6511 0.034756 TGCATTGCACGTAGGTCAGT 59.965 50.000 7.38 0.00 31.71 3.41
4374 6516 0.821517 TGCACGTAGGTCAGTATGGG 59.178 55.000 0.00 0.00 36.16 4.00
4378 6520 0.759436 CGTAGGTCAGTATGGGCCCT 60.759 60.000 25.70 11.37 36.16 5.19
4379 6521 1.049402 GTAGGTCAGTATGGGCCCTC 58.951 60.000 25.70 13.59 36.16 4.30
4388 6533 0.032515 TATGGGCCCTCAGTCTTCGA 60.033 55.000 25.70 0.00 0.00 3.71
4395 6540 2.615493 GCCCTCAGTCTTCGATTTTCCA 60.615 50.000 0.00 0.00 0.00 3.53
4400 6545 2.412089 CAGTCTTCGATTTTCCACGGAC 59.588 50.000 0.00 0.00 0.00 4.79
4405 6550 2.481854 TCGATTTTCCACGGACGAAAA 58.518 42.857 0.00 8.41 41.91 2.29
4410 6555 0.034337 TTCCACGGACGAAAAGGGAG 59.966 55.000 0.00 0.00 0.00 4.30
4414 6559 0.249398 ACGGACGAAAAGGGAGATGG 59.751 55.000 0.00 0.00 0.00 3.51
4415 6560 0.535335 CGGACGAAAAGGGAGATGGA 59.465 55.000 0.00 0.00 0.00 3.41
4416 6561 1.739371 CGGACGAAAAGGGAGATGGAC 60.739 57.143 0.00 0.00 0.00 4.02
4420 6565 0.618981 GAAAAGGGAGATGGACGGGT 59.381 55.000 0.00 0.00 0.00 5.28
4421 6566 0.328258 AAAAGGGAGATGGACGGGTG 59.672 55.000 0.00 0.00 0.00 4.61
4426 6582 3.083997 AGATGGACGGGTGGAGCC 61.084 66.667 0.00 0.00 0.00 4.70
4428 6584 2.692368 ATGGACGGGTGGAGCCAT 60.692 61.111 0.00 0.00 39.65 4.40
4430 6586 3.399181 GGACGGGTGGAGCCATGA 61.399 66.667 0.00 0.00 39.65 3.07
4431 6587 2.187946 GACGGGTGGAGCCATGAG 59.812 66.667 0.00 0.00 39.65 2.90
4433 6589 3.083349 CGGGTGGAGCCATGAGGA 61.083 66.667 0.00 0.00 39.65 3.71
4435 6591 1.077429 GGGTGGAGCCATGAGGAAC 60.077 63.158 0.00 0.00 39.65 3.62
4440 6596 1.511305 GAGCCATGAGGAACGTCGA 59.489 57.895 0.00 0.00 36.89 4.20
4441 6597 0.526524 GAGCCATGAGGAACGTCGAG 60.527 60.000 0.00 0.00 36.89 4.04
4463 6619 1.140816 GGACTGAACTGTGAAGACGC 58.859 55.000 0.00 0.00 0.00 5.19
4465 6621 1.215655 ACTGAACTGTGAAGACGCGC 61.216 55.000 5.73 0.00 0.00 6.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.674240 GCACACTGACTTAGTAATTTTCGGATC 60.674 40.741 0.00 0.00 37.60 3.36
1 2 6.092259 GCACACTGACTTAGTAATTTTCGGAT 59.908 38.462 0.00 0.00 37.60 4.18
2 3 5.407387 GCACACTGACTTAGTAATTTTCGGA 59.593 40.000 0.00 0.00 37.60 4.55
4 5 6.223138 TGCACACTGACTTAGTAATTTTCG 57.777 37.500 0.00 0.00 37.60 3.46
5 6 6.080406 GCTGCACACTGACTTAGTAATTTTC 58.920 40.000 0.00 0.00 37.60 2.29
6 7 5.334105 CGCTGCACACTGACTTAGTAATTTT 60.334 40.000 0.00 0.00 37.60 1.82
7 8 4.152402 CGCTGCACACTGACTTAGTAATTT 59.848 41.667 0.00 0.00 37.60 1.82
8 9 3.679980 CGCTGCACACTGACTTAGTAATT 59.320 43.478 0.00 0.00 37.60 1.40
9 10 3.254060 CGCTGCACACTGACTTAGTAAT 58.746 45.455 0.00 0.00 37.60 1.89
10 11 2.672714 CGCTGCACACTGACTTAGTAA 58.327 47.619 0.00 0.00 37.60 2.24
11 12 1.668919 GCGCTGCACACTGACTTAGTA 60.669 52.381 0.00 0.00 37.60 1.82
12 13 0.946221 GCGCTGCACACTGACTTAGT 60.946 55.000 0.00 0.00 41.36 2.24
13 14 1.630244 GGCGCTGCACACTGACTTAG 61.630 60.000 7.64 0.00 0.00 2.18
14 15 1.667830 GGCGCTGCACACTGACTTA 60.668 57.895 7.64 0.00 0.00 2.24
15 16 2.974698 GGCGCTGCACACTGACTT 60.975 61.111 7.64 0.00 0.00 3.01
16 17 3.933722 AGGCGCTGCACACTGACT 61.934 61.111 7.64 0.00 0.00 3.41
17 18 3.720193 CAGGCGCTGCACACTGAC 61.720 66.667 7.64 0.00 32.86 3.51
18 19 3.871248 CTCAGGCGCTGCACACTGA 62.871 63.158 7.64 9.54 37.61 3.41
19 20 3.420606 CTCAGGCGCTGCACACTG 61.421 66.667 7.64 4.89 0.00 3.66
20 21 3.586461 CTCTCAGGCGCTGCACACT 62.586 63.158 7.64 0.00 0.00 3.55
21 22 3.117171 CTCTCAGGCGCTGCACAC 61.117 66.667 7.64 0.00 0.00 3.82
23 24 3.362399 TAGCTCTCAGGCGCTGCAC 62.362 63.158 7.64 0.00 37.05 4.57
24 25 3.070576 TAGCTCTCAGGCGCTGCA 61.071 61.111 7.64 0.00 37.05 4.41
25 26 2.279385 CTAGCTCTCAGGCGCTGC 60.279 66.667 7.64 2.66 37.05 5.25
26 27 1.065600 GTCTAGCTCTCAGGCGCTG 59.934 63.158 7.64 3.67 37.05 5.18
27 28 2.477176 CGTCTAGCTCTCAGGCGCT 61.477 63.158 7.64 0.00 33.95 5.92
28 29 2.025441 CGTCTAGCTCTCAGGCGC 59.975 66.667 0.00 0.00 33.95 6.53
29 30 2.025441 GCGTCTAGCTCTCAGGCG 59.975 66.667 4.62 4.62 43.80 5.52
35 36 7.889812 ACTGTATAGTGTGGCGTCTAGCTCT 62.890 48.000 0.00 0.00 40.04 4.09
36 37 5.749989 ACTGTATAGTGTGGCGTCTAGCTC 61.750 50.000 0.00 0.00 40.04 4.09
37 38 3.936031 ACTGTATAGTGTGGCGTCTAGCT 60.936 47.826 0.00 0.00 40.04 3.32
38 39 2.358267 ACTGTATAGTGTGGCGTCTAGC 59.642 50.000 0.00 0.00 39.66 3.42
49 50 3.609644 GCTAGGCGCTACACTGTATAGTG 60.610 52.174 17.20 17.20 46.55 2.74
50 51 2.553172 GCTAGGCGCTACACTGTATAGT 59.447 50.000 7.64 0.00 34.63 2.12
51 52 3.204597 GCTAGGCGCTACACTGTATAG 57.795 52.381 7.64 0.00 35.14 1.31
67 68 0.528684 GTGCAACGCCTAGGAGCTAG 60.529 60.000 14.75 3.92 34.16 3.42
68 69 0.970937 AGTGCAACGCCTAGGAGCTA 60.971 55.000 14.75 0.00 45.86 3.32
69 70 0.970937 TAGTGCAACGCCTAGGAGCT 60.971 55.000 14.75 3.79 45.86 4.09
70 71 0.528684 CTAGTGCAACGCCTAGGAGC 60.529 60.000 14.75 10.85 45.86 4.70
71 72 0.818296 ACTAGTGCAACGCCTAGGAG 59.182 55.000 14.75 12.99 45.86 3.69
72 73 0.530744 CACTAGTGCAACGCCTAGGA 59.469 55.000 14.75 0.00 45.86 2.94
73 74 3.050703 CACTAGTGCAACGCCTAGG 57.949 57.895 10.54 3.67 45.86 3.02
84 85 1.808799 CTCAGGCGCTGCACTAGTG 60.809 63.158 18.93 18.93 39.95 2.74
85 86 1.943116 CTCTCAGGCGCTGCACTAGT 61.943 60.000 7.64 0.00 0.00 2.57
86 87 1.226916 CTCTCAGGCGCTGCACTAG 60.227 63.158 7.64 0.00 0.00 2.57
87 88 2.888111 CTCTCAGGCGCTGCACTA 59.112 61.111 7.64 0.00 0.00 2.74
88 89 4.756458 GCTCTCAGGCGCTGCACT 62.756 66.667 7.64 0.00 0.00 4.40
89 90 3.362399 TAGCTCTCAGGCGCTGCAC 62.362 63.158 7.64 0.00 37.05 4.57
90 91 3.070576 TAGCTCTCAGGCGCTGCA 61.071 61.111 7.64 0.00 37.05 4.41
91 92 2.279385 CTAGCTCTCAGGCGCTGC 60.279 66.667 7.64 2.66 37.05 5.25
92 93 2.416678 CCTAGCTCTCAGGCGCTG 59.583 66.667 7.64 3.67 37.05 5.18
105 106 4.514577 CTGACCCGTGGCGCCTAG 62.515 72.222 29.70 20.71 0.00 3.02
116 117 1.429148 CTATTTCACGCGGCTGACCC 61.429 60.000 12.47 0.00 0.00 4.46
117 118 0.739813 ACTATTTCACGCGGCTGACC 60.740 55.000 12.47 0.00 0.00 4.02
118 119 1.076332 AACTATTTCACGCGGCTGAC 58.924 50.000 12.47 0.00 0.00 3.51
119 120 1.730064 GAAACTATTTCACGCGGCTGA 59.270 47.619 12.47 2.44 39.45 4.26
120 121 1.463056 TGAAACTATTTCACGCGGCTG 59.537 47.619 12.47 0.00 44.21 4.85
121 122 1.803334 TGAAACTATTTCACGCGGCT 58.197 45.000 12.47 0.00 44.21 5.52
128 129 5.361427 TGAACTGTCCGTGAAACTATTTCA 58.639 37.500 0.00 0.00 46.68 2.69
129 130 5.917541 TGAACTGTCCGTGAAACTATTTC 57.082 39.130 0.00 0.00 40.08 2.17
130 131 6.710744 AGAATGAACTGTCCGTGAAACTATTT 59.289 34.615 0.00 0.00 31.75 1.40
131 132 6.147821 CAGAATGAACTGTCCGTGAAACTATT 59.852 38.462 0.00 0.00 39.69 1.73
132 133 5.639506 CAGAATGAACTGTCCGTGAAACTAT 59.360 40.000 0.00 0.00 39.69 2.12
133 134 4.988540 CAGAATGAACTGTCCGTGAAACTA 59.011 41.667 0.00 0.00 39.69 2.24
134 135 3.809832 CAGAATGAACTGTCCGTGAAACT 59.190 43.478 0.00 0.00 39.69 2.66
135 136 3.560068 ACAGAATGAACTGTCCGTGAAAC 59.440 43.478 0.00 0.00 46.36 2.78
136 137 3.804036 ACAGAATGAACTGTCCGTGAAA 58.196 40.909 0.00 0.00 46.36 2.69
137 138 3.469008 ACAGAATGAACTGTCCGTGAA 57.531 42.857 0.00 0.00 46.36 3.18
145 146 7.080099 ACGAAATCAAATCACAGAATGAACTG 58.920 34.615 0.00 0.00 41.93 3.16
146 147 7.173907 AGACGAAATCAAATCACAGAATGAACT 59.826 33.333 0.00 0.00 41.93 3.01
147 148 7.301054 AGACGAAATCAAATCACAGAATGAAC 58.699 34.615 0.00 0.00 41.93 3.18
148 149 7.439157 AGACGAAATCAAATCACAGAATGAA 57.561 32.000 0.00 0.00 41.93 2.57
149 150 8.722480 ATAGACGAAATCAAATCACAGAATGA 57.278 30.769 0.00 0.00 43.13 2.57
151 152 9.265901 CCTATAGACGAAATCAAATCACAGAAT 57.734 33.333 0.00 0.00 0.00 2.40
152 153 8.258007 ACCTATAGACGAAATCAAATCACAGAA 58.742 33.333 0.00 0.00 0.00 3.02
153 154 7.782049 ACCTATAGACGAAATCAAATCACAGA 58.218 34.615 0.00 0.00 0.00 3.41
154 155 7.706607 TGACCTATAGACGAAATCAAATCACAG 59.293 37.037 0.00 0.00 0.00 3.66
155 156 7.552459 TGACCTATAGACGAAATCAAATCACA 58.448 34.615 0.00 0.00 0.00 3.58
156 157 8.420374 TTGACCTATAGACGAAATCAAATCAC 57.580 34.615 0.00 0.00 0.00 3.06
157 158 9.613428 ATTTGACCTATAGACGAAATCAAATCA 57.387 29.630 0.00 0.00 39.78 2.57
161 162 9.226606 ACAAATTTGACCTATAGACGAAATCAA 57.773 29.630 24.64 0.00 0.00 2.57
162 163 8.786826 ACAAATTTGACCTATAGACGAAATCA 57.213 30.769 24.64 0.00 0.00 2.57
163 164 8.879759 TGACAAATTTGACCTATAGACGAAATC 58.120 33.333 24.64 6.30 0.00 2.17
164 165 8.786826 TGACAAATTTGACCTATAGACGAAAT 57.213 30.769 24.64 0.00 0.00 2.17
165 166 8.610248 TTGACAAATTTGACCTATAGACGAAA 57.390 30.769 24.64 2.44 0.00 3.46
166 167 8.610248 TTTGACAAATTTGACCTATAGACGAA 57.390 30.769 24.64 3.11 0.00 3.85
167 168 8.786826 ATTTGACAAATTTGACCTATAGACGA 57.213 30.769 24.64 0.00 0.00 4.20
168 169 8.883731 AGATTTGACAAATTTGACCTATAGACG 58.116 33.333 24.64 0.00 0.00 4.18
170 171 9.396022 GGAGATTTGACAAATTTGACCTATAGA 57.604 33.333 24.64 0.00 0.00 1.98
171 172 8.624776 GGGAGATTTGACAAATTTGACCTATAG 58.375 37.037 24.64 0.00 0.00 1.31
172 173 7.559897 GGGGAGATTTGACAAATTTGACCTATA 59.440 37.037 24.64 5.27 0.00 1.31
173 174 6.381133 GGGGAGATTTGACAAATTTGACCTAT 59.619 38.462 24.64 13.29 0.00 2.57
174 175 5.714806 GGGGAGATTTGACAAATTTGACCTA 59.285 40.000 24.64 9.31 0.00 3.08
175 176 4.528206 GGGGAGATTTGACAAATTTGACCT 59.472 41.667 24.64 10.47 0.00 3.85
176 177 4.322725 GGGGGAGATTTGACAAATTTGACC 60.323 45.833 24.64 15.06 0.00 4.02
177 178 4.528206 AGGGGGAGATTTGACAAATTTGAC 59.472 41.667 24.64 18.43 0.00 3.18
178 179 4.750941 AGGGGGAGATTTGACAAATTTGA 58.249 39.130 24.64 2.30 0.00 2.69
179 180 5.393027 CGTAGGGGGAGATTTGACAAATTTG 60.393 44.000 16.67 16.67 0.00 2.32
180 181 4.705023 CGTAGGGGGAGATTTGACAAATTT 59.295 41.667 14.46 9.16 0.00 1.82
181 182 4.270008 CGTAGGGGGAGATTTGACAAATT 58.730 43.478 14.46 5.30 0.00 1.82
182 183 3.886123 CGTAGGGGGAGATTTGACAAAT 58.114 45.455 13.24 13.24 0.00 2.32
183 184 3.343941 CGTAGGGGGAGATTTGACAAA 57.656 47.619 2.48 2.48 0.00 2.83
226 227 2.002586 ACGCGAGATGGAAAACATGAG 58.997 47.619 15.93 0.00 40.72 2.90
242 243 1.136611 GTCAGTCAAACAAGCTACGCG 60.137 52.381 3.53 3.53 0.00 6.01
255 256 4.317530 TCCTTAAGCTAGGAGTCAGTCA 57.682 45.455 0.72 0.00 39.40 3.41
256 257 5.662674 TTTCCTTAAGCTAGGAGTCAGTC 57.337 43.478 5.39 0.00 44.82 3.51
257 258 6.435292 TTTTTCCTTAAGCTAGGAGTCAGT 57.565 37.500 5.39 0.00 44.82 3.41
370 958 2.968675 AGCTACGCTCAATTTACCGTT 58.031 42.857 0.00 0.00 30.62 4.44
371 959 2.667473 AGCTACGCTCAATTTACCGT 57.333 45.000 0.00 0.00 30.62 4.83
375 963 5.914033 ACCATCTTAGCTACGCTCAATTTA 58.086 37.500 0.00 0.00 40.44 1.40
376 964 4.770795 ACCATCTTAGCTACGCTCAATTT 58.229 39.130 0.00 0.00 40.44 1.82
377 965 4.408182 ACCATCTTAGCTACGCTCAATT 57.592 40.909 0.00 0.00 40.44 2.32
379 967 3.521560 CAACCATCTTAGCTACGCTCAA 58.478 45.455 0.00 0.00 40.44 3.02
380 968 2.159099 CCAACCATCTTAGCTACGCTCA 60.159 50.000 0.00 0.00 40.44 4.26
381 969 2.474816 CCAACCATCTTAGCTACGCTC 58.525 52.381 0.00 0.00 40.44 5.03
391 980 3.394606 ACTACACAGAACCCAACCATCTT 59.605 43.478 0.00 0.00 0.00 2.40
394 983 2.224769 CCACTACACAGAACCCAACCAT 60.225 50.000 0.00 0.00 0.00 3.55
400 989 0.036294 GGCTCCACTACACAGAACCC 60.036 60.000 0.00 0.00 0.00 4.11
410 999 1.478837 CCTGATAGACCGGCTCCACTA 60.479 57.143 0.00 0.00 0.00 2.74
411 1000 0.757188 CCTGATAGACCGGCTCCACT 60.757 60.000 0.00 0.00 0.00 4.00
418 1007 5.681639 AGGATTTAAAACCTGATAGACCGG 58.318 41.667 15.66 0.00 34.99 5.28
420 1009 8.706521 AGTCTAGGATTTAAAACCTGATAGACC 58.293 37.037 26.62 16.66 38.84 3.85
464 1057 9.088987 AGAAAGCCTACAATTAATCCAGAAAAA 57.911 29.630 0.00 0.00 0.00 1.94
476 1069 8.267894 ACACATATCACTAGAAAGCCTACAATT 58.732 33.333 0.00 0.00 0.00 2.32
480 1073 9.250624 CTAAACACATATCACTAGAAAGCCTAC 57.749 37.037 0.00 0.00 0.00 3.18
481 1074 8.978472 ACTAAACACATATCACTAGAAAGCCTA 58.022 33.333 0.00 0.00 0.00 3.93
484 1077 8.703604 TCACTAAACACATATCACTAGAAAGC 57.296 34.615 0.00 0.00 0.00 3.51
497 1090 7.926018 GGGAATGTTTTCTTTCACTAAACACAT 59.074 33.333 0.00 0.00 42.51 3.21
499 1092 7.489160 AGGGAATGTTTTCTTTCACTAAACAC 58.511 34.615 0.00 0.00 43.05 3.32
500 1093 7.654022 AGGGAATGTTTTCTTTCACTAAACA 57.346 32.000 0.00 0.00 43.05 2.83
504 1097 7.272037 GTGAAGGGAATGTTTTCTTTCACTA 57.728 36.000 13.39 0.00 43.74 2.74
506 1099 6.149129 AGTGAAGGGAATGTTTTCTTTCAC 57.851 37.500 12.98 12.98 44.93 3.18
507 1100 6.831353 TGTAGTGAAGGGAATGTTTTCTTTCA 59.169 34.615 0.00 0.00 36.21 2.69
509 1102 7.201911 CCTTGTAGTGAAGGGAATGTTTTCTTT 60.202 37.037 0.00 0.00 39.19 2.52
510 1103 6.265422 CCTTGTAGTGAAGGGAATGTTTTCTT 59.735 38.462 0.00 0.00 39.19 2.52
511 1104 5.770162 CCTTGTAGTGAAGGGAATGTTTTCT 59.230 40.000 0.00 0.00 39.19 2.52
512 1105 5.535030 ACCTTGTAGTGAAGGGAATGTTTTC 59.465 40.000 0.00 0.00 46.11 2.29
513 1106 5.454966 ACCTTGTAGTGAAGGGAATGTTTT 58.545 37.500 0.00 0.00 46.11 2.43
514 1107 5.061721 ACCTTGTAGTGAAGGGAATGTTT 57.938 39.130 0.00 0.00 46.11 2.83
515 1108 4.724279 ACCTTGTAGTGAAGGGAATGTT 57.276 40.909 0.00 0.00 46.11 2.71
516 1109 4.724279 AACCTTGTAGTGAAGGGAATGT 57.276 40.909 0.00 0.00 46.11 2.71
517 1110 6.405278 AAAAACCTTGTAGTGAAGGGAATG 57.595 37.500 0.00 0.00 46.11 2.67
518 1111 7.947890 TCATAAAAACCTTGTAGTGAAGGGAAT 59.052 33.333 0.00 0.00 46.11 3.01
519 1112 7.229907 GTCATAAAAACCTTGTAGTGAAGGGAA 59.770 37.037 0.00 0.00 46.11 3.97
520 1113 6.713450 GTCATAAAAACCTTGTAGTGAAGGGA 59.287 38.462 0.00 0.00 46.11 4.20
521 1114 6.348213 CGTCATAAAAACCTTGTAGTGAAGGG 60.348 42.308 0.00 0.00 46.11 3.95
523 1116 7.170998 AGTCGTCATAAAAACCTTGTAGTGAAG 59.829 37.037 0.00 0.00 0.00 3.02
524 1117 6.987992 AGTCGTCATAAAAACCTTGTAGTGAA 59.012 34.615 0.00 0.00 0.00 3.18
525 1118 6.518493 AGTCGTCATAAAAACCTTGTAGTGA 58.482 36.000 0.00 0.00 0.00 3.41
526 1119 6.780706 AGTCGTCATAAAAACCTTGTAGTG 57.219 37.500 0.00 0.00 0.00 2.74
527 1120 6.145048 CGAAGTCGTCATAAAAACCTTGTAGT 59.855 38.462 0.00 0.00 34.11 2.73
528 1121 6.522761 CGAAGTCGTCATAAAAACCTTGTAG 58.477 40.000 0.00 0.00 34.11 2.74
529 1122 6.456447 CGAAGTCGTCATAAAAACCTTGTA 57.544 37.500 0.00 0.00 34.11 2.41
530 1123 5.338614 CGAAGTCGTCATAAAAACCTTGT 57.661 39.130 0.00 0.00 34.11 3.16
545 1138 8.406716 CACAACATGTTAAAATTAACGAAGTCG 58.593 33.333 11.53 0.00 45.00 4.18
546 1139 8.205297 GCACAACATGTTAAAATTAACGAAGTC 58.795 33.333 11.53 0.00 45.00 3.01
548 1141 7.168302 TGGCACAACATGTTAAAATTAACGAAG 59.832 33.333 11.53 0.00 40.14 3.79
549 1142 6.978659 TGGCACAACATGTTAAAATTAACGAA 59.021 30.769 11.53 0.00 40.14 3.85
550 1143 6.504398 TGGCACAACATGTTAAAATTAACGA 58.496 32.000 11.53 2.45 40.14 3.85
551 1144 6.615418 GCTGGCACAACATGTTAAAATTAACG 60.615 38.462 11.53 0.00 41.57 3.18
552 1145 6.423604 AGCTGGCACAACATGTTAAAATTAAC 59.576 34.615 11.53 8.72 40.11 2.01
553 1146 6.520272 AGCTGGCACAACATGTTAAAATTAA 58.480 32.000 11.53 0.00 38.70 1.40
554 1147 6.095432 AGCTGGCACAACATGTTAAAATTA 57.905 33.333 11.53 0.00 38.70 1.40
555 1148 4.959723 AGCTGGCACAACATGTTAAAATT 58.040 34.783 11.53 0.00 38.70 1.82
556 1149 4.039004 TGAGCTGGCACAACATGTTAAAAT 59.961 37.500 11.53 0.00 38.70 1.82
557 1150 3.382865 TGAGCTGGCACAACATGTTAAAA 59.617 39.130 11.53 0.00 38.70 1.52
558 1151 2.954989 TGAGCTGGCACAACATGTTAAA 59.045 40.909 11.53 0.00 38.70 1.52
563 1156 1.812235 TACTGAGCTGGCACAACATG 58.188 50.000 0.00 0.00 38.70 3.21
576 1169 7.414098 CCCCTAAAACAATTTCGACATACTGAG 60.414 40.741 0.00 0.00 0.00 3.35
584 1177 3.504520 TCTGCCCCTAAAACAATTTCGAC 59.495 43.478 0.00 0.00 0.00 4.20
588 1181 4.041444 TGCATTCTGCCCCTAAAACAATTT 59.959 37.500 0.00 0.00 44.23 1.82
590 1183 3.172339 TGCATTCTGCCCCTAAAACAAT 58.828 40.909 0.00 0.00 44.23 2.71
594 1187 2.496871 CACATGCATTCTGCCCCTAAAA 59.503 45.455 0.00 0.00 44.23 1.52
600 1193 0.459585 CAAGCACATGCATTCTGCCC 60.460 55.000 18.52 0.00 44.23 5.36
602 1195 1.336517 ACACAAGCACATGCATTCTGC 60.337 47.619 15.58 15.58 45.16 4.26
603 1196 2.717580 ACACAAGCACATGCATTCTG 57.282 45.000 6.64 0.00 45.16 3.02
607 1200 3.506844 TGTATGAACACAAGCACATGCAT 59.493 39.130 6.64 0.00 45.16 3.96
608 1201 2.883386 TGTATGAACACAAGCACATGCA 59.117 40.909 6.64 0.00 45.16 3.96
610 1203 3.189910 AGCTGTATGAACACAAGCACATG 59.810 43.478 0.00 0.00 0.00 3.21
612 1205 2.549329 CAGCTGTATGAACACAAGCACA 59.451 45.455 5.25 0.00 0.00 4.57
617 1210 4.071961 ACACTCAGCTGTATGAACACAA 57.928 40.909 21.62 0.00 0.00 3.33
628 1221 7.492344 TCATAAACATACACATACACTCAGCTG 59.508 37.037 7.63 7.63 0.00 4.24
630 1223 7.517417 GCTCATAAACATACACATACACTCAGC 60.517 40.741 0.00 0.00 0.00 4.26
631 1224 7.492344 TGCTCATAAACATACACATACACTCAG 59.508 37.037 0.00 0.00 0.00 3.35
639 1232 7.433680 TCGTAGATGCTCATAAACATACACAT 58.566 34.615 0.00 0.00 0.00 3.21
649 1242 8.793592 ACACAGTATAATCGTAGATGCTCATAA 58.206 33.333 0.00 0.00 45.12 1.90
651 1244 7.220741 ACACAGTATAATCGTAGATGCTCAT 57.779 36.000 0.00 0.00 45.12 2.90
681 1274 2.227865 CGGGGTCGTCATGAATGTTTTT 59.772 45.455 0.00 0.00 0.00 1.94
695 1288 2.738013 AAGTTTCTTAGACGGGGTCG 57.262 50.000 0.00 0.00 37.67 4.79
696 1289 3.513119 ACCTAAGTTTCTTAGACGGGGTC 59.487 47.826 15.41 0.00 0.00 4.46
717 1321 1.809684 GGCACCTAGAAAGACCACAC 58.190 55.000 0.00 0.00 0.00 3.82
770 1374 4.003648 CACTTACTTGCCCTTAACCTCTG 58.996 47.826 0.00 0.00 0.00 3.35
771 1375 3.908103 TCACTTACTTGCCCTTAACCTCT 59.092 43.478 0.00 0.00 0.00 3.69
772 1376 4.281898 TCACTTACTTGCCCTTAACCTC 57.718 45.455 0.00 0.00 0.00 3.85
781 1395 2.744202 CACACCTGATCACTTACTTGCC 59.256 50.000 0.00 0.00 0.00 4.52
797 1411 1.626654 CGCGGTCACAAGATCACACC 61.627 60.000 0.00 0.00 0.00 4.16
840 1454 0.685097 TAACCTCAGCAGCGGAAAGT 59.315 50.000 0.00 0.00 0.00 2.66
860 1474 2.200170 CTTGGCCTTGCGTAACAGGC 62.200 60.000 3.32 7.63 40.09 4.85
944 1648 7.592164 GCAGAAGGAGTTCGATCTAATACTAAC 59.408 40.741 0.00 0.00 37.79 2.34
945 1649 7.502895 AGCAGAAGGAGTTCGATCTAATACTAA 59.497 37.037 0.00 0.00 37.79 2.24
947 1651 5.830991 AGCAGAAGGAGTTCGATCTAATACT 59.169 40.000 0.00 0.00 37.79 2.12
948 1652 6.079424 AGCAGAAGGAGTTCGATCTAATAC 57.921 41.667 0.00 0.00 37.79 1.89
952 1656 3.429547 GCAAGCAGAAGGAGTTCGATCTA 60.430 47.826 0.00 0.00 37.79 1.98
953 1657 2.676463 GCAAGCAGAAGGAGTTCGATCT 60.676 50.000 0.00 0.00 37.79 2.75
958 1669 0.520847 GCAGCAAGCAGAAGGAGTTC 59.479 55.000 0.00 0.00 44.79 3.01
1995 2733 3.376078 GTGCAGTACGACCCCGGA 61.376 66.667 0.73 0.00 40.78 5.14
2147 2885 2.645192 TTGGGCAGATCGACGAGCA 61.645 57.895 16.35 0.00 0.00 4.26
2211 2949 2.262915 CGGCACTGGTCCTCTGTC 59.737 66.667 0.00 0.00 0.00 3.51
2214 2952 4.316823 TCCCGGCACTGGTCCTCT 62.317 66.667 0.00 0.00 33.17 3.69
2484 3240 2.187100 CCCTGGCTCTCTCTCTTCTTT 58.813 52.381 0.00 0.00 0.00 2.52
2490 3246 0.907230 ACAACCCCTGGCTCTCTCTC 60.907 60.000 0.00 0.00 0.00 3.20
2601 3363 1.270907 GGGACTTGAGCTCTCCTTCA 58.729 55.000 16.19 0.00 0.00 3.02
2602 3364 0.539518 GGGGACTTGAGCTCTCCTTC 59.460 60.000 16.19 6.01 0.00 3.46
2734 4027 0.251634 TTGCAGTACCCGATCATGCA 59.748 50.000 0.02 0.02 44.58 3.96
2767 4060 1.495579 AACTCCAGCACCAGCATCCT 61.496 55.000 0.00 0.00 45.49 3.24
2909 4212 2.202919 CGCAGTGCATGATCGGGA 60.203 61.111 16.83 0.00 0.00 5.14
3277 4633 0.191064 TCCACCCTCTCCAAGTCTGT 59.809 55.000 0.00 0.00 0.00 3.41
3279 4635 0.787084 TCTCCACCCTCTCCAAGTCT 59.213 55.000 0.00 0.00 0.00 3.24
3395 4751 4.514577 CTGGTAGCACCTCGGCCG 62.515 72.222 22.12 22.12 39.58 6.13
3411 4768 2.715763 TGTAACAAGAGGGAGGGTCT 57.284 50.000 0.00 0.00 0.00 3.85
3439 4796 3.862642 GCAGAAGACACGATCAAAGGAGT 60.863 47.826 0.00 0.00 0.00 3.85
3461 4818 5.333187 GCTCGATGCACTCAATCTAATCAAG 60.333 44.000 0.00 0.00 42.31 3.02
3520 4877 9.850198 TGGATCATTCTATATCAATGTTGTTCA 57.150 29.630 0.00 0.00 33.61 3.18
3547 4904 5.246981 TGAAAGAAGAGATGGATGGTTGT 57.753 39.130 0.00 0.00 0.00 3.32
3579 4936 4.641094 TCAAAGAAGACTTACCCGCAAAAA 59.359 37.500 0.00 0.00 35.05 1.94
3581 4938 3.811083 TCAAAGAAGACTTACCCGCAAA 58.189 40.909 0.00 0.00 35.05 3.68
3582 4939 3.478857 TCAAAGAAGACTTACCCGCAA 57.521 42.857 0.00 0.00 35.05 4.85
3583 4940 3.478857 TTCAAAGAAGACTTACCCGCA 57.521 42.857 0.00 0.00 35.05 5.69
3584 4941 4.695928 AGATTTCAAAGAAGACTTACCCGC 59.304 41.667 0.00 0.00 35.05 6.13
3585 4942 6.426937 TCAAGATTTCAAAGAAGACTTACCCG 59.573 38.462 0.00 0.00 35.05 5.28
3586 4943 7.745620 TCAAGATTTCAAAGAAGACTTACCC 57.254 36.000 0.00 0.00 35.05 3.69
3587 4944 8.621286 TGTTCAAGATTTCAAAGAAGACTTACC 58.379 33.333 0.00 0.00 35.05 2.85
3590 4947 8.522830 TGTTGTTCAAGATTTCAAAGAAGACTT 58.477 29.630 0.00 0.00 38.05 3.01
3592 4949 8.687824 TTGTTGTTCAAGATTTCAAAGAAGAC 57.312 30.769 0.00 0.00 0.00 3.01
3593 4950 9.357652 CTTTGTTGTTCAAGATTTCAAAGAAGA 57.642 29.630 14.61 0.00 41.14 2.87
3595 4952 8.924691 CACTTTGTTGTTCAAGATTTCAAAGAA 58.075 29.630 21.16 0.00 41.14 2.52
3596 4953 7.545265 CCACTTTGTTGTTCAAGATTTCAAAGA 59.455 33.333 21.16 0.00 41.14 2.52
3597 4954 7.331687 ACCACTTTGTTGTTCAAGATTTCAAAG 59.668 33.333 16.55 16.55 42.94 2.77
3598 4955 7.117523 CACCACTTTGTTGTTCAAGATTTCAAA 59.882 33.333 0.00 0.00 37.35 2.69
3599 4956 6.589523 CACCACTTTGTTGTTCAAGATTTCAA 59.410 34.615 0.00 0.00 37.35 2.69
3600 4957 6.098679 CACCACTTTGTTGTTCAAGATTTCA 58.901 36.000 0.00 0.00 37.35 2.69
3601 4958 5.519927 CCACCACTTTGTTGTTCAAGATTTC 59.480 40.000 0.00 0.00 37.35 2.17
3602 4959 5.186797 TCCACCACTTTGTTGTTCAAGATTT 59.813 36.000 0.00 0.00 37.35 2.17
3603 4960 4.709397 TCCACCACTTTGTTGTTCAAGATT 59.291 37.500 0.00 0.00 37.35 2.40
3604 4961 4.277476 TCCACCACTTTGTTGTTCAAGAT 58.723 39.130 0.00 0.00 37.35 2.40
3605 4962 3.691575 TCCACCACTTTGTTGTTCAAGA 58.308 40.909 0.00 0.00 37.35 3.02
3609 4966 5.619981 GCTCATATCCACCACTTTGTTGTTC 60.620 44.000 0.00 0.00 0.00 3.18
3610 4967 4.218417 GCTCATATCCACCACTTTGTTGTT 59.782 41.667 0.00 0.00 0.00 2.83
3611 4968 3.758554 GCTCATATCCACCACTTTGTTGT 59.241 43.478 0.00 0.00 0.00 3.32
3612 4969 3.758023 TGCTCATATCCACCACTTTGTTG 59.242 43.478 0.00 0.00 0.00 3.33
3613 4970 4.032960 TGCTCATATCCACCACTTTGTT 57.967 40.909 0.00 0.00 0.00 2.83
3614 4971 3.719268 TGCTCATATCCACCACTTTGT 57.281 42.857 0.00 0.00 0.00 2.83
3616 4973 3.356290 GGTTGCTCATATCCACCACTTT 58.644 45.455 0.00 0.00 0.00 2.66
3617 4974 2.680805 CGGTTGCTCATATCCACCACTT 60.681 50.000 0.00 0.00 0.00 3.16
3618 4975 1.134401 CGGTTGCTCATATCCACCACT 60.134 52.381 0.00 0.00 0.00 4.00
3619 4976 1.299541 CGGTTGCTCATATCCACCAC 58.700 55.000 0.00 0.00 0.00 4.16
3620 4977 0.908910 ACGGTTGCTCATATCCACCA 59.091 50.000 0.00 0.00 0.00 4.17
3621 4978 2.755650 CTACGGTTGCTCATATCCACC 58.244 52.381 0.00 0.00 0.00 4.61
3622 4979 2.135933 GCTACGGTTGCTCATATCCAC 58.864 52.381 7.32 0.00 0.00 4.02
3659 5016 7.383102 ACCAAAAGAGTAGATTGCACAATAG 57.617 36.000 0.00 0.00 0.00 1.73
3671 5028 7.813627 GGAACTACTGTAGAACCAAAAGAGTAG 59.186 40.741 21.01 0.00 40.86 2.57
3685 5042 5.063944 GTGCAACATGATGGAACTACTGTAG 59.936 44.000 13.13 13.13 36.32 2.74
3804 5164 6.721321 TGAAACGTTTAAGGTTGAAGACATC 58.279 36.000 14.65 0.00 0.00 3.06
3902 5262 1.898574 ACAAAAGGCCAGGAGCACG 60.899 57.895 5.01 0.00 46.50 5.34
3928 5288 3.222173 TGTGTTTGGGACAGCTACATT 57.778 42.857 0.00 0.00 42.39 2.71
3984 5591 4.425520 CACTTCTCCGTGGATTTAGAGTC 58.574 47.826 0.00 0.00 0.00 3.36
3999 5606 1.886542 ACGAATTTTGGCCCACTTCTC 59.113 47.619 0.00 0.00 0.00 2.87
4026 5691 0.597568 TGAATGACCAGCAAAAGCCG 59.402 50.000 0.00 0.00 0.00 5.52
4176 6287 0.934496 CCGAAACGTCACTGCTTTCA 59.066 50.000 0.00 0.00 0.00 2.69
4215 6326 2.260869 GGCACAACACAGCCGATGT 61.261 57.895 0.00 0.00 45.43 3.06
4221 6332 2.633657 CGACAGGCACAACACAGC 59.366 61.111 0.00 0.00 0.00 4.40
4222 6333 2.633657 GCGACAGGCACAACACAG 59.366 61.111 0.00 0.00 42.87 3.66
4223 6334 2.899838 GGCGACAGGCACAACACA 60.900 61.111 0.00 0.00 46.16 3.72
4224 6335 4.012895 CGGCGACAGGCACAACAC 62.013 66.667 0.00 0.00 46.16 3.32
4304 6420 0.037326 GCTTCCTCGTGTGTCCATCA 60.037 55.000 0.00 0.00 0.00 3.07
4337 6461 0.862490 CAATGCACCGTACGTGAACA 59.138 50.000 15.21 7.22 46.20 3.18
4363 6505 0.983378 ACTGAGGGCCCATACTGACC 60.983 60.000 27.56 2.55 0.00 4.02
4365 6507 0.339859 AGACTGAGGGCCCATACTGA 59.660 55.000 27.56 0.00 0.00 3.41
4366 6508 1.139853 GAAGACTGAGGGCCCATACTG 59.860 57.143 27.56 19.74 0.00 2.74
4367 6509 1.501582 GAAGACTGAGGGCCCATACT 58.498 55.000 27.56 12.71 0.00 2.12
4369 6511 0.032515 TCGAAGACTGAGGGCCCATA 60.033 55.000 27.56 11.63 0.00 2.74
4374 6516 2.010497 GGAAAATCGAAGACTGAGGGC 58.990 52.381 0.00 0.00 42.51 5.19
4378 6520 2.297880 TCCGTGGAAAATCGAAGACTGA 59.702 45.455 0.00 0.00 42.51 3.41
4379 6521 2.412089 GTCCGTGGAAAATCGAAGACTG 59.588 50.000 0.00 0.00 42.51 3.51
4388 6533 1.883926 CCCTTTTCGTCCGTGGAAAAT 59.116 47.619 6.13 0.00 41.15 1.82
4395 6540 0.249398 CCATCTCCCTTTTCGTCCGT 59.751 55.000 0.00 0.00 0.00 4.69
4400 6545 0.462047 CCCGTCCATCTCCCTTTTCG 60.462 60.000 0.00 0.00 0.00 3.46
4405 6550 2.365635 CCACCCGTCCATCTCCCT 60.366 66.667 0.00 0.00 0.00 4.20
4410 6555 2.746375 ATGGCTCCACCCGTCCATC 61.746 63.158 0.00 0.00 34.43 3.51
4414 6559 2.187946 CTCATGGCTCCACCCGTC 59.812 66.667 0.00 0.00 37.83 4.79
4415 6560 3.402681 CCTCATGGCTCCACCCGT 61.403 66.667 0.00 0.00 37.83 5.28
4416 6561 2.669133 TTCCTCATGGCTCCACCCG 61.669 63.158 0.00 0.00 37.83 5.28
4420 6565 1.596934 GACGTTCCTCATGGCTCCA 59.403 57.895 0.00 0.00 0.00 3.86
4421 6566 1.519455 CGACGTTCCTCATGGCTCC 60.519 63.158 0.00 0.00 0.00 4.70
4440 6596 2.034812 GTCTTCACAGTTCAGTCCGTCT 59.965 50.000 0.00 0.00 0.00 4.18
4441 6597 2.395654 GTCTTCACAGTTCAGTCCGTC 58.604 52.381 0.00 0.00 0.00 4.79
4447 6603 1.488957 GCGCGTCTTCACAGTTCAG 59.511 57.895 8.43 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.