Multiple sequence alignment - TraesCS7D01G393600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G393600 chr7D 100.000 3452 0 0 1 3452 509066313 509069764 0.000000e+00 6375.0
1 TraesCS7D01G393600 chr7D 80.584 685 89 19 1580 2229 508894919 508895594 4.000000e-134 488.0
2 TraesCS7D01G393600 chr7D 91.923 260 21 0 1192 1451 107949047 107948788 7.040000e-97 364.0
3 TraesCS7D01G393600 chr7D 92.195 205 10 3 3241 3443 61925395 61925595 5.640000e-73 285.0
4 TraesCS7D01G393600 chr7D 85.827 254 28 4 694 940 509066528 509066780 2.640000e-66 263.0
5 TraesCS7D01G393600 chr7D 85.827 254 28 4 216 468 509067006 509067252 2.640000e-66 263.0
6 TraesCS7D01G393600 chr7D 84.848 264 32 4 3194 3451 2857291 2857030 3.420000e-65 259.0
7 TraesCS7D01G393600 chr7D 84.549 233 13 6 3191 3402 181032042 181032272 3.490000e-50 209.0
8 TraesCS7D01G393600 chr7D 81.154 260 28 9 3190 3431 562181162 562180906 4.550000e-44 189.0
9 TraesCS7D01G393600 chr7D 87.368 95 7 3 534 627 58788027 58787937 1.690000e-18 104.0
10 TraesCS7D01G393600 chr7B 90.041 1215 95 14 1462 2661 537355361 537356564 0.000000e+00 1550.0
11 TraesCS7D01G393600 chr7B 84.642 1159 98 47 2 1134 537353919 537355023 0.000000e+00 1081.0
12 TraesCS7D01G393600 chr7B 80.129 775 94 31 1579 2317 537259231 537259981 1.100000e-144 523.0
13 TraesCS7D01G393600 chr7B 85.606 396 35 3 2696 3069 537356657 537357052 2.500000e-106 396.0
14 TraesCS7D01G393600 chr7B 92.803 264 18 1 1189 1451 32210 32473 6.990000e-102 381.0
15 TraesCS7D01G393600 chr7B 86.345 249 33 1 694 941 537354114 537354362 1.580000e-68 270.0
16 TraesCS7D01G393600 chr7B 85.433 254 30 6 216 468 537354567 537354814 1.230000e-64 257.0
17 TraesCS7D01G393600 chr7B 88.806 134 11 4 1002 1132 325847309 325847441 9.910000e-36 161.0
18 TraesCS7D01G393600 chr7A 91.248 1154 68 16 1 1133 579723549 579724690 0.000000e+00 1541.0
19 TraesCS7D01G393600 chr7A 90.035 1154 82 17 1533 2661 579725069 579726214 0.000000e+00 1463.0
20 TraesCS7D01G393600 chr7A 81.472 761 89 26 1579 2300 579649474 579650221 8.310000e-161 577.0
21 TraesCS7D01G393600 chr7A 84.630 514 37 12 2702 3193 579726312 579726805 1.120000e-129 473.0
22 TraesCS7D01G393600 chr7A 83.137 255 34 8 694 940 579723773 579724026 1.250000e-54 224.0
23 TraesCS7D01G393600 chr7A 82.625 259 20 13 3189 3426 649126536 649126282 4.520000e-49 206.0
24 TraesCS7D01G393600 chr7A 97.561 41 1 0 2663 2703 202847951 202847911 1.720000e-08 71.3
25 TraesCS7D01G393600 chr3D 98.473 262 3 1 1192 1452 301344590 301344329 8.730000e-126 460.0
26 TraesCS7D01G393600 chr3D 91.469 211 12 4 3244 3451 61928758 61928551 5.640000e-73 285.0
27 TraesCS7D01G393600 chr3D 90.865 208 16 2 3244 3451 553897296 553897092 3.390000e-70 276.0
28 TraesCS7D01G393600 chr3D 83.333 246 15 9 3189 3412 35653533 35653774 1.620000e-48 204.0
29 TraesCS7D01G393600 chr3D 88.421 95 7 2 534 628 108210829 108210739 1.010000e-20 111.0
30 TraesCS7D01G393600 chr3D 87.368 95 5 5 534 627 348973361 348973273 6.100000e-18 102.0
31 TraesCS7D01G393600 chr2B 88.533 375 34 4 1462 1832 91548847 91548478 2.440000e-121 446.0
32 TraesCS7D01G393600 chr2B 87.831 378 37 4 1459 1832 354681425 354681797 5.290000e-118 435.0
33 TraesCS7D01G393600 chr2B 90.000 100 6 4 1036 1132 91549166 91549068 3.620000e-25 126.0
34 TraesCS7D01G393600 chr5D 96.923 260 8 0 1192 1451 562836159 562835900 1.470000e-118 436.0
35 TraesCS7D01G393600 chr5D 93.015 272 16 2 1180 1451 563000765 563001033 8.980000e-106 394.0
36 TraesCS7D01G393600 chr5D 93.462 260 14 2 1192 1451 562947735 562947479 1.940000e-102 383.0
37 TraesCS7D01G393600 chr5D 91.923 260 21 0 1192 1451 309577383 309577124 7.040000e-97 364.0
38 TraesCS7D01G393600 chr5D 91.321 265 21 2 1189 1451 517455175 517455439 9.110000e-96 361.0
39 TraesCS7D01G393600 chr5D 92.157 204 11 4 3241 3443 533479542 533479741 2.030000e-72 283.0
40 TraesCS7D01G393600 chr5D 86.134 238 11 5 3190 3407 544659292 544659057 1.600000e-58 237.0
41 TraesCS7D01G393600 chr5D 93.023 43 3 0 2660 2702 246345066 246345024 2.880000e-06 63.9
42 TraesCS7D01G393600 chr4D 91.985 262 19 2 1192 1452 363683969 363683709 1.960000e-97 366.0
43 TraesCS7D01G393600 chr4D 93.500 200 10 2 3244 3443 449793659 449793855 9.370000e-76 294.0
44 TraesCS7D01G393600 chr4D 93.333 45 3 0 2660 2704 453135353 453135397 2.220000e-07 67.6
45 TraesCS7D01G393600 chr4D 85.714 56 6 1 2656 2709 455659185 455659130 1.340000e-04 58.4
46 TraesCS7D01G393600 chr2D 91.707 205 15 1 3241 3443 629631836 629632040 2.030000e-72 283.0
47 TraesCS7D01G393600 chr2D 91.388 209 13 3 3244 3451 568831544 568831340 7.290000e-72 281.0
48 TraesCS7D01G393600 chr2D 95.455 44 2 0 2662 2705 32551965 32552008 1.720000e-08 71.3
49 TraesCS7D01G393600 chr2D 93.333 45 3 0 2660 2704 186755988 186755944 2.220000e-07 67.6
50 TraesCS7D01G393600 chr1D 92.079 202 13 3 3244 3443 8180938 8180738 7.290000e-72 281.0
51 TraesCS7D01G393600 chr1D 77.991 468 70 23 1620 2072 193512891 193513340 2.640000e-66 263.0
52 TraesCS7D01G393600 chr1D 100.000 35 0 0 2670 2704 460980229 460980263 8.000000e-07 65.8
53 TraesCS7D01G393600 chr1A 78.038 469 69 24 1620 2072 240318536 240318986 7.350000e-67 265.0
54 TraesCS7D01G393600 chr1A 82.171 258 19 14 3191 3427 2921537 2921788 2.720000e-46 196.0
55 TraesCS7D01G393600 chr1A 86.598 97 9 2 528 624 447120647 447120739 1.690000e-18 104.0
56 TraesCS7D01G393600 chr1A 95.349 43 2 0 2661 2703 24482569 24482527 6.180000e-08 69.4
57 TraesCS7D01G393600 chr1A 91.837 49 3 1 2655 2703 311077309 311077262 2.220000e-07 67.6
58 TraesCS7D01G393600 chr1A 96.970 33 1 0 2660 2692 571879105 571879137 4.810000e-04 56.5
59 TraesCS7D01G393600 chr1A 89.130 46 4 1 2661 2706 585723114 585723070 4.810000e-04 56.5
60 TraesCS7D01G393600 chr5B 88.384 198 19 3 3244 3440 40448033 40447839 5.760000e-58 235.0
61 TraesCS7D01G393600 chr5B 91.837 49 3 1 2660 2708 680823675 680823628 2.220000e-07 67.6
62 TraesCS7D01G393600 chrUn 82.031 256 20 14 3191 3425 475866597 475866347 9.780000e-46 195.0
63 TraesCS7D01G393600 chrUn 87.234 94 8 2 528 621 79951806 79951895 1.690000e-18 104.0
64 TraesCS7D01G393600 chr1B 89.908 109 10 1 1013 1121 227792597 227792704 4.650000e-29 139.0
65 TraesCS7D01G393600 chr1B 87.097 124 12 4 1012 1132 226904004 226904126 1.670000e-28 137.0
66 TraesCS7D01G393600 chr3A 89.362 94 6 2 534 627 467651376 467651287 7.830000e-22 115.0
67 TraesCS7D01G393600 chr3A 100.000 39 0 0 2663 2701 102707 102669 4.780000e-09 73.1
68 TraesCS7D01G393600 chr3A 93.182 44 3 0 2660 2703 694102786 694102829 8.000000e-07 65.8
69 TraesCS7D01G393600 chr6A 87.368 95 7 3 534 628 574212916 574212827 1.690000e-18 104.0
70 TraesCS7D01G393600 chr6A 100.000 41 0 0 2663 2703 610509349 610509309 3.690000e-10 76.8
71 TraesCS7D01G393600 chr6D 97.561 41 1 0 2663 2703 51782848 51782808 1.720000e-08 71.3
72 TraesCS7D01G393600 chr6D 93.182 44 3 0 2660 2703 81394231 81394274 8.000000e-07 65.8
73 TraesCS7D01G393600 chr6B 97.500 40 1 0 2665 2704 533817248 533817209 6.180000e-08 69.4
74 TraesCS7D01G393600 chr5A 89.796 49 4 1 2660 2708 66850070 66850023 1.030000e-05 62.1
75 TraesCS7D01G393600 chr4B 89.583 48 5 0 2660 2707 12057796 12057749 1.030000e-05 62.1
76 TraesCS7D01G393600 chr4B 90.909 44 4 0 2660 2703 86999603 86999560 3.720000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G393600 chr7D 509066313 509069764 3451 False 2300.333333 6375 90.551333 1 3452 3 chr7D.!!$F4 3451
1 TraesCS7D01G393600 chr7D 508894919 508895594 675 False 488.000000 488 80.584000 1580 2229 1 chr7D.!!$F3 649
2 TraesCS7D01G393600 chr7B 537353919 537357052 3133 False 710.800000 1550 86.413400 2 3069 5 chr7B.!!$F4 3067
3 TraesCS7D01G393600 chr7B 537259231 537259981 750 False 523.000000 523 80.129000 1579 2317 1 chr7B.!!$F3 738
4 TraesCS7D01G393600 chr7A 579723549 579726805 3256 False 925.250000 1541 87.262500 1 3193 4 chr7A.!!$F2 3192
5 TraesCS7D01G393600 chr7A 579649474 579650221 747 False 577.000000 577 81.472000 1579 2300 1 chr7A.!!$F1 721
6 TraesCS7D01G393600 chr2B 91548478 91549166 688 True 286.000000 446 89.266500 1036 1832 2 chr2B.!!$R1 796

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
804 821 0.179234 GAGAACTCCTTAGGCTGGCC 59.821 60.0 3.0 3.0 0.0 5.36 F
1708 2019 0.323725 AATTTGCACCAGAGCCCGAT 60.324 50.0 0.0 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1991 2328 0.311790 CATCGCCCAACACCATATGC 59.688 55.0 0.0 0.0 0.0 3.14 R
3367 3814 0.034477 AGCTTATTGGTCCCGGTTGG 60.034 55.0 0.0 0.0 0.0 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 3.998672 TCGCCTGGGAACGACACC 61.999 66.667 0.00 0.00 32.45 4.16
63 68 4.489771 CGCCATGTCTGGGTCCCC 62.490 72.222 5.13 0.00 43.36 4.81
73 78 2.185310 CTGGGTCCCCCTTTGACTCG 62.185 65.000 5.13 0.00 45.70 4.18
89 94 3.201290 GACTCGGACGGAGAATGTAGTA 58.799 50.000 16.23 0.00 46.23 1.82
93 98 1.336125 GGACGGAGAATGTAGTACCGG 59.664 57.143 0.00 0.00 46.45 5.28
127 134 0.313672 CCATCACTCGAGAGCTAGCC 59.686 60.000 21.68 2.81 0.00 3.93
165 172 1.518133 CTCGCGCTTCTTCCTCCTG 60.518 63.158 5.56 0.00 0.00 3.86
169 179 3.191539 GCTTCTTCCTCCTGCGCG 61.192 66.667 0.00 0.00 0.00 6.86
206 216 3.432588 CTCGACGACGACAGGCCT 61.433 66.667 5.75 0.00 43.81 5.19
266 277 4.854784 ATCACGATCACGCGCGCT 62.855 61.111 32.58 15.57 43.96 5.92
281 292 2.679716 GCTGCCCCTCTCCATTGT 59.320 61.111 0.00 0.00 0.00 2.71
295 306 1.308998 CATTGTCCGGGTAATCCTGC 58.691 55.000 0.00 0.00 38.71 4.85
324 335 4.917906 AGTTTGAGAACTCCATAGGCTT 57.082 40.909 0.00 0.00 42.35 4.35
353 364 3.728373 GGAATGCACGGGAGGGGT 61.728 66.667 0.00 0.00 0.00 4.95
359 370 2.365635 CACGGGAGGGGTCCTGAT 60.366 66.667 7.27 0.00 39.42 2.90
370 381 0.603065 GGTCCTGATTTTGGTGTGGC 59.397 55.000 0.00 0.00 0.00 5.01
417 428 1.825090 TTGCTAGCACCATGTTCAGG 58.175 50.000 19.17 0.00 0.00 3.86
520 531 3.138468 ACAGAGAACCTTTACCCAGCTTT 59.862 43.478 0.00 0.00 0.00 3.51
521 532 4.145052 CAGAGAACCTTTACCCAGCTTTT 58.855 43.478 0.00 0.00 0.00 2.27
530 541 1.903404 CCCAGCTTTTCGGCCACTT 60.903 57.895 2.24 0.00 0.00 3.16
554 565 6.100004 TCATCCGTCTCAAAATAAGTGTCTC 58.900 40.000 0.00 0.00 0.00 3.36
558 569 5.696724 CCGTCTCAAAATAAGTGTCTCAACT 59.303 40.000 0.00 0.00 0.00 3.16
612 623 9.482627 AGAACTAAAGTTGAGACACTTATCTTG 57.517 33.333 0.00 0.00 38.56 3.02
632 643 1.763545 GGGACAGAGGGAATACCACTC 59.236 57.143 0.00 0.00 43.89 3.51
633 644 1.763545 GGACAGAGGGAATACCACTCC 59.236 57.143 0.00 0.00 43.89 3.85
634 645 2.467880 GACAGAGGGAATACCACTCCA 58.532 52.381 0.00 0.00 43.89 3.86
635 646 2.168728 GACAGAGGGAATACCACTCCAC 59.831 54.545 0.00 0.00 43.89 4.02
636 647 2.187958 CAGAGGGAATACCACTCCACA 58.812 52.381 0.00 0.00 43.89 4.17
738 754 2.621000 GGCGAATCACGATCACGC 59.379 61.111 17.24 17.24 45.77 5.34
771 788 1.494721 TCCATTGGCCAGGTAATCCTC 59.505 52.381 5.11 0.00 43.07 3.71
774 791 0.830648 TTGGCCAGGTAATCCTCTCG 59.169 55.000 5.11 0.00 43.07 4.04
804 821 0.179234 GAGAACTCCTTAGGCTGGCC 59.821 60.000 3.00 3.00 0.00 5.36
834 851 3.733507 ATGCGCGGGAGAGGTCCTA 62.734 63.158 8.83 0.00 43.36 2.94
836 853 2.499827 GCGCGGGAGAGGTCCTAAT 61.500 63.158 8.83 0.00 43.36 1.73
958 979 1.142097 GCGTCCTGAGCTACTTCCC 59.858 63.158 0.00 0.00 0.00 3.97
1017 1050 3.391665 AATGGAGGCCGCGGAAGAG 62.392 63.158 33.48 0.95 0.00 2.85
1041 1074 1.097547 AGATTTGGGCGCCGATTCTG 61.098 55.000 22.54 0.00 29.48 3.02
1109 1142 3.564511 CAAGCCAGGTACATTTCGTTTG 58.435 45.455 0.00 0.00 0.00 2.93
1121 1154 3.602390 TTTCGTTTGTTGCTCAGCTAC 57.398 42.857 4.04 4.04 35.10 3.58
1134 1170 3.491792 GCTCAGCTACCCTTCTCACATAC 60.492 52.174 0.00 0.00 0.00 2.39
1136 1172 3.701542 TCAGCTACCCTTCTCACATACTG 59.298 47.826 0.00 0.00 0.00 2.74
1146 1188 4.820284 TCTCACATACTGATGCTAGACG 57.180 45.455 0.00 0.00 36.43 4.18
1150 1192 4.879545 TCACATACTGATGCTAGACGTACA 59.120 41.667 0.00 0.00 36.43 2.90
1152 1194 4.882427 ACATACTGATGCTAGACGTACACT 59.118 41.667 0.00 0.00 36.43 3.55
1153 1195 5.007823 ACATACTGATGCTAGACGTACACTC 59.992 44.000 0.00 0.00 36.43 3.51
1154 1196 3.344515 ACTGATGCTAGACGTACACTCA 58.655 45.455 0.00 0.00 0.00 3.41
1190 1461 6.544564 AGTTATGCTAGACAGAGGAAGAGTAC 59.455 42.308 0.00 0.00 0.00 2.73
1192 1463 5.695424 TGCTAGACAGAGGAAGAGTACTA 57.305 43.478 0.00 0.00 0.00 1.82
1193 1464 5.430007 TGCTAGACAGAGGAAGAGTACTAC 58.570 45.833 0.00 0.00 0.00 2.73
1194 1465 5.190132 TGCTAGACAGAGGAAGAGTACTACT 59.810 44.000 0.00 0.00 0.00 2.57
1196 1467 5.106876 AGACAGAGGAAGAGTACTACTCC 57.893 47.826 11.94 12.86 46.18 3.85
1197 1468 4.080186 AGACAGAGGAAGAGTACTACTCCC 60.080 50.000 15.91 7.75 46.18 4.30
1199 1470 4.080186 ACAGAGGAAGAGTACTACTCCCTC 60.080 50.000 22.40 22.40 46.18 4.30
1200 1471 3.460712 AGAGGAAGAGTACTACTCCCTCC 59.539 52.174 24.39 21.87 46.27 4.30
1201 1472 2.173143 AGGAAGAGTACTACTCCCTCCG 59.827 54.545 19.93 0.00 46.18 4.63
1202 1473 2.092484 GGAAGAGTACTACTCCCTCCGT 60.092 54.545 11.94 0.00 46.18 4.69
1203 1474 3.619419 GAAGAGTACTACTCCCTCCGTT 58.381 50.000 11.94 0.16 46.18 4.44
1204 1475 3.735720 AGAGTACTACTCCCTCCGTTT 57.264 47.619 11.94 0.00 46.18 3.60
1205 1476 4.044946 AGAGTACTACTCCCTCCGTTTT 57.955 45.455 11.94 0.00 46.18 2.43
1206 1477 4.414677 AGAGTACTACTCCCTCCGTTTTT 58.585 43.478 11.94 0.00 46.18 1.94
1207 1478 5.574188 AGAGTACTACTCCCTCCGTTTTTA 58.426 41.667 11.94 0.00 46.18 1.52
1208 1479 6.193504 AGAGTACTACTCCCTCCGTTTTTAT 58.806 40.000 11.94 0.00 46.18 1.40
1209 1480 6.666980 AGAGTACTACTCCCTCCGTTTTTATT 59.333 38.462 11.94 0.00 46.18 1.40
1210 1481 7.179872 AGAGTACTACTCCCTCCGTTTTTATTT 59.820 37.037 11.94 0.00 46.18 1.40
1211 1482 8.366359 AGTACTACTCCCTCCGTTTTTATTTA 57.634 34.615 0.00 0.00 0.00 1.40
1212 1483 8.253810 AGTACTACTCCCTCCGTTTTTATTTAC 58.746 37.037 0.00 0.00 0.00 2.01
1213 1484 7.250032 ACTACTCCCTCCGTTTTTATTTACT 57.750 36.000 0.00 0.00 0.00 2.24
1214 1485 7.326454 ACTACTCCCTCCGTTTTTATTTACTC 58.674 38.462 0.00 0.00 0.00 2.59
1215 1486 5.494724 ACTCCCTCCGTTTTTATTTACTCC 58.505 41.667 0.00 0.00 0.00 3.85
1216 1487 4.506758 TCCCTCCGTTTTTATTTACTCCG 58.493 43.478 0.00 0.00 0.00 4.63
1217 1488 3.064408 CCCTCCGTTTTTATTTACTCCGC 59.936 47.826 0.00 0.00 0.00 5.54
1218 1489 3.685756 CCTCCGTTTTTATTTACTCCGCA 59.314 43.478 0.00 0.00 0.00 5.69
1219 1490 4.334481 CCTCCGTTTTTATTTACTCCGCAT 59.666 41.667 0.00 0.00 0.00 4.73
1220 1491 5.524646 CCTCCGTTTTTATTTACTCCGCATA 59.475 40.000 0.00 0.00 0.00 3.14
1221 1492 6.204108 CCTCCGTTTTTATTTACTCCGCATAT 59.796 38.462 0.00 0.00 0.00 1.78
1222 1493 7.255001 CCTCCGTTTTTATTTACTCCGCATATT 60.255 37.037 0.00 0.00 0.00 1.28
1223 1494 8.659925 TCCGTTTTTATTTACTCCGCATATTA 57.340 30.769 0.00 0.00 0.00 0.98
1224 1495 9.275398 TCCGTTTTTATTTACTCCGCATATTAT 57.725 29.630 0.00 0.00 0.00 1.28
1225 1496 9.537848 CCGTTTTTATTTACTCCGCATATTATC 57.462 33.333 0.00 0.00 0.00 1.75
1233 1504 9.725019 ATTTACTCCGCATATTATCTTTGATCA 57.275 29.630 0.00 0.00 0.00 2.92
1234 1505 9.554395 TTTACTCCGCATATTATCTTTGATCAA 57.446 29.630 3.38 3.38 0.00 2.57
1235 1506 9.554395 TTACTCCGCATATTATCTTTGATCAAA 57.446 29.630 19.45 19.45 0.00 2.69
1236 1507 8.092521 ACTCCGCATATTATCTTTGATCAAAG 57.907 34.615 33.28 33.28 46.82 2.77
1237 1508 7.716998 ACTCCGCATATTATCTTTGATCAAAGT 59.283 33.333 35.56 27.20 45.88 2.66
1238 1509 8.087982 TCCGCATATTATCTTTGATCAAAGTC 57.912 34.615 35.56 19.29 45.88 3.01
1239 1510 7.714813 TCCGCATATTATCTTTGATCAAAGTCA 59.285 33.333 35.56 25.42 45.88 3.41
1240 1511 8.344831 CCGCATATTATCTTTGATCAAAGTCAA 58.655 33.333 35.56 29.94 45.88 3.18
1241 1512 9.720667 CGCATATTATCTTTGATCAAAGTCAAA 57.279 29.630 35.56 28.35 45.88 2.69
1258 1529 7.954788 AAGTCAAACTTTGCAAACTTTAACA 57.045 28.000 8.05 0.00 34.11 2.41
1259 1530 7.954788 AGTCAAACTTTGCAAACTTTAACAA 57.045 28.000 8.05 0.00 0.00 2.83
1260 1531 8.371770 AGTCAAACTTTGCAAACTTTAACAAA 57.628 26.923 8.05 0.00 0.00 2.83
1446 1717 4.698304 TGCAGAGTAAATAAAAACGGAGGG 59.302 41.667 0.00 0.00 0.00 4.30
1449 1720 6.171213 CAGAGTAAATAAAAACGGAGGGAGT 58.829 40.000 0.00 0.00 0.00 3.85
1452 1723 7.821359 AGAGTAAATAAAAACGGAGGGAGTAAC 59.179 37.037 0.00 0.00 0.00 2.50
1453 1724 7.452562 AGTAAATAAAAACGGAGGGAGTAACA 58.547 34.615 0.00 0.00 0.00 2.41
1454 1725 8.105197 AGTAAATAAAAACGGAGGGAGTAACAT 58.895 33.333 0.00 0.00 0.00 2.71
1455 1726 7.770366 AAATAAAAACGGAGGGAGTAACATT 57.230 32.000 0.00 0.00 0.00 2.71
1456 1727 6.753107 ATAAAAACGGAGGGAGTAACATTG 57.247 37.500 0.00 0.00 0.00 2.82
1457 1728 2.109425 AACGGAGGGAGTAACATTGC 57.891 50.000 0.00 0.00 0.00 3.56
1460 1740 1.066143 CGGAGGGAGTAACATTGCAGT 60.066 52.381 0.00 0.00 0.00 4.40
1464 1744 4.323562 GGAGGGAGTAACATTGCAGTAACT 60.324 45.833 0.00 0.00 0.00 2.24
1467 1747 4.392138 GGGAGTAACATTGCAGTAACTCAC 59.608 45.833 15.64 10.95 36.03 3.51
1493 1775 7.065803 CCTCCACTCGTATATGAAAACAAACAT 59.934 37.037 0.00 0.00 0.00 2.71
1558 1859 0.818040 ACTCTGTTCGGCACCAAACC 60.818 55.000 0.00 0.00 0.00 3.27
1667 1978 8.978874 AGAATATTTCAGTTATGTGTATGGCA 57.021 30.769 0.00 0.00 0.00 4.92
1708 2019 0.323725 AATTTGCACCAGAGCCCGAT 60.324 50.000 0.00 0.00 0.00 4.18
1734 2067 3.433306 TTTGGGAGGTACCATGTCAAG 57.567 47.619 15.94 0.00 40.91 3.02
1737 2070 3.104512 TGGGAGGTACCATGTCAAGTAG 58.895 50.000 15.94 0.00 41.20 2.57
1746 2079 4.040755 ACCATGTCAAGTAGGCTATCCTT 58.959 43.478 0.00 0.00 40.66 3.36
1991 2328 1.073923 AGCTGGTTAAGGGTGTCAAGG 59.926 52.381 0.00 0.00 0.00 3.61
2039 2376 3.426963 GGTGAAGAGTCGCTACTTCTCAG 60.427 52.174 0.00 0.00 41.79 3.35
2049 2386 3.194062 GCTACTTCTCAGCATCAGTTCC 58.806 50.000 0.00 0.00 38.93 3.62
2072 2422 1.279271 ACCCAGCACATCTCAAGGTAC 59.721 52.381 0.00 0.00 0.00 3.34
2079 2429 1.338769 ACATCTCAAGGTACGGGCAAC 60.339 52.381 0.00 0.00 0.00 4.17
2108 2458 5.853572 AGTTGTTTCTATTAGGTTGGGGA 57.146 39.130 0.00 0.00 0.00 4.81
2124 2477 5.410924 GTTGGGGAAGAATATCAAAGTTGC 58.589 41.667 0.00 0.00 0.00 4.17
2193 2549 4.853007 ACAAATGGAGGAATCTTCTGAGG 58.147 43.478 0.00 0.00 0.00 3.86
2205 2561 0.474854 TTCTGAGGGCTTGTGGGGTA 60.475 55.000 0.00 0.00 0.00 3.69
2334 2691 1.250328 TGATGCAGGAAAAGGCACAG 58.750 50.000 0.00 0.00 43.75 3.66
2349 2706 2.094182 GGCACAGAAGACTATGTTCCGA 60.094 50.000 0.00 0.00 0.00 4.55
2386 2743 2.355010 GATCCAACAGATCCAAGGGG 57.645 55.000 0.00 0.00 45.00 4.79
2412 2769 0.465705 TCGATTCAGCCTCCACATCC 59.534 55.000 0.00 0.00 0.00 3.51
2528 2886 7.668525 GTAGCACCTAAATGTGTTACTTCTT 57.331 36.000 9.87 0.00 44.60 2.52
2606 2971 5.822519 CCGGCCTTTGTGCATGTATATATAT 59.177 40.000 0.00 0.00 0.00 0.86
2607 2972 6.989759 CCGGCCTTTGTGCATGTATATATATA 59.010 38.462 0.00 0.00 0.00 0.86
2608 2973 7.042051 CCGGCCTTTGTGCATGTATATATATAC 60.042 40.741 21.34 21.34 39.14 1.47
2609 2974 7.710907 CGGCCTTTGTGCATGTATATATATACT 59.289 37.037 25.95 13.67 39.36 2.12
2647 3012 4.155826 TGCACTGTATAAATTCTGTGTGGC 59.844 41.667 7.89 0.00 36.42 5.01
2655 3020 2.697147 ATTCTGTGTGGCCGGTGCTT 62.697 55.000 1.90 0.00 37.74 3.91
2675 3040 6.362632 GCTTTAGCATTAGTGTCAAAAACG 57.637 37.500 0.00 0.00 41.59 3.60
2676 3041 5.164187 GCTTTAGCATTAGTGTCAAAAACGC 60.164 40.000 0.00 0.00 41.59 4.84
2678 3043 4.147219 AGCATTAGTGTCAAAAACGCTC 57.853 40.909 0.00 0.00 45.69 5.03
2680 3045 4.275936 AGCATTAGTGTCAAAAACGCTCTT 59.724 37.500 0.00 0.00 45.69 2.85
2681 3046 5.468746 AGCATTAGTGTCAAAAACGCTCTTA 59.531 36.000 0.00 0.00 45.69 2.10
2683 3048 7.333423 AGCATTAGTGTCAAAAACGCTCTTATA 59.667 33.333 0.00 0.00 45.69 0.98
2684 3049 8.122952 GCATTAGTGTCAAAAACGCTCTTATAT 58.877 33.333 0.00 0.00 45.69 0.86
2697 3062 9.877178 AAACGCTCTTATATTATAAGATGGAGG 57.123 33.333 21.01 12.96 33.61 4.30
2698 3063 8.012957 ACGCTCTTATATTATAAGATGGAGGG 57.987 38.462 21.01 23.65 33.61 4.30
2699 3064 7.839705 ACGCTCTTATATTATAAGATGGAGGGA 59.160 37.037 27.61 11.70 33.61 4.20
2700 3065 8.356657 CGCTCTTATATTATAAGATGGAGGGAG 58.643 40.741 21.01 11.37 33.61 4.30
2714 3139 2.177233 GGAGGGAGTACCATCTGTCCTA 59.823 54.545 0.00 0.00 45.10 2.94
2725 3150 9.601810 AGTACCATCTGTCCTATTATATGTCAA 57.398 33.333 0.00 0.00 0.00 3.18
2761 3188 8.247562 TGCACTTGTTAGTACAAAACATTTCTT 58.752 29.630 12.81 0.00 43.33 2.52
2883 3310 2.672874 TGCTGTATCTTCGTCAATGTGC 59.327 45.455 0.00 0.00 0.00 4.57
2885 3312 3.179048 CTGTATCTTCGTCAATGTGCGA 58.821 45.455 0.00 0.00 35.17 5.10
2900 3327 2.095110 TGTGCGATCTTTGCAATGGAAG 60.095 45.455 11.99 1.07 45.23 3.46
2905 3332 4.676196 GCGATCTTTGCAATGGAAGATTGT 60.676 41.667 20.07 0.68 42.16 2.71
2976 3423 2.679934 CCAATGCAAGCTCGCACGA 61.680 57.895 0.00 0.00 46.56 4.35
2997 3444 2.308570 AGTTACATGGGCAGTCATCCAA 59.691 45.455 0.00 0.00 36.54 3.53
3070 3517 4.613925 TTGGCAATTGGCTACATGAAAA 57.386 36.364 29.53 12.43 44.01 2.29
3080 3527 3.792956 GGCTACATGAAAACGCATTGATG 59.207 43.478 0.00 0.00 0.00 3.07
3092 3539 1.268896 GCATTGATGATGGTGGAAGCG 60.269 52.381 0.00 0.00 36.92 4.68
3116 3563 4.309099 CAACCTTGATTTGGTCATTGTGG 58.691 43.478 0.00 0.00 36.69 4.17
3118 3565 2.564062 CCTTGATTTGGTCATTGTGGCT 59.436 45.455 0.00 0.00 36.54 4.75
3119 3566 3.581755 CTTGATTTGGTCATTGTGGCTG 58.418 45.455 0.00 0.00 36.54 4.85
3120 3567 2.596346 TGATTTGGTCATTGTGGCTGT 58.404 42.857 0.00 0.00 0.00 4.40
3121 3568 2.296752 TGATTTGGTCATTGTGGCTGTG 59.703 45.455 0.00 0.00 0.00 3.66
3122 3569 1.774110 TTTGGTCATTGTGGCTGTGT 58.226 45.000 0.00 0.00 0.00 3.72
3123 3570 2.647683 TTGGTCATTGTGGCTGTGTA 57.352 45.000 0.00 0.00 0.00 2.90
3124 3571 2.183478 TGGTCATTGTGGCTGTGTAG 57.817 50.000 0.00 0.00 0.00 2.74
3125 3572 1.696884 TGGTCATTGTGGCTGTGTAGA 59.303 47.619 0.00 0.00 0.00 2.59
3126 3573 2.105649 TGGTCATTGTGGCTGTGTAGAA 59.894 45.455 0.00 0.00 0.00 2.10
3127 3574 3.146066 GGTCATTGTGGCTGTGTAGAAA 58.854 45.455 0.00 0.00 0.00 2.52
3128 3575 3.758554 GGTCATTGTGGCTGTGTAGAAAT 59.241 43.478 0.00 0.00 0.00 2.17
3129 3576 4.379813 GGTCATTGTGGCTGTGTAGAAATG 60.380 45.833 0.00 0.00 0.00 2.32
3130 3577 4.455533 GTCATTGTGGCTGTGTAGAAATGA 59.544 41.667 0.00 0.00 31.91 2.57
3131 3578 5.124457 GTCATTGTGGCTGTGTAGAAATGAT 59.876 40.000 0.00 0.00 35.65 2.45
3175 3622 3.238108 ACTCTCTGTTGCAGGTTATCG 57.762 47.619 0.00 0.00 31.51 2.92
3193 3640 4.832590 ATCGTCTAGTGTATGCAGTACC 57.167 45.455 0.00 0.00 32.03 3.34
3194 3641 3.613030 TCGTCTAGTGTATGCAGTACCA 58.387 45.455 0.00 0.00 32.03 3.25
3195 3642 3.376234 TCGTCTAGTGTATGCAGTACCAC 59.624 47.826 0.00 0.00 32.03 4.16
3196 3643 3.377485 CGTCTAGTGTATGCAGTACCACT 59.623 47.826 12.89 12.89 32.86 4.00
3197 3644 4.573607 CGTCTAGTGTATGCAGTACCACTA 59.426 45.833 13.54 13.54 31.58 2.74
3198 3645 5.277393 CGTCTAGTGTATGCAGTACCACTAG 60.277 48.000 24.56 24.56 40.97 2.57
3199 3646 5.589452 GTCTAGTGTATGCAGTACCACTAGT 59.411 44.000 26.80 0.00 40.76 2.57
3200 3647 6.765036 GTCTAGTGTATGCAGTACCACTAGTA 59.235 42.308 26.80 18.25 40.76 1.82
3201 3648 7.281774 GTCTAGTGTATGCAGTACCACTAGTAA 59.718 40.741 26.80 16.12 40.76 2.24
3202 3649 6.845758 AGTGTATGCAGTACCACTAGTAAA 57.154 37.500 0.00 0.00 31.05 2.01
3203 3650 7.235935 AGTGTATGCAGTACCACTAGTAAAA 57.764 36.000 0.00 0.00 31.05 1.52
3204 3651 7.673180 AGTGTATGCAGTACCACTAGTAAAAA 58.327 34.615 0.00 0.00 31.05 1.94
3221 3668 1.627864 AAAAGGGTCATTTGTCCCGG 58.372 50.000 7.15 0.00 46.13 5.73
3222 3669 0.481128 AAAGGGTCATTTGTCCCGGT 59.519 50.000 0.00 0.00 46.13 5.28
3223 3670 0.481128 AAGGGTCATTTGTCCCGGTT 59.519 50.000 0.00 0.00 46.13 4.44
3224 3671 0.037734 AGGGTCATTTGTCCCGGTTC 59.962 55.000 0.00 0.00 46.13 3.62
3225 3672 0.250989 GGGTCATTTGTCCCGGTTCA 60.251 55.000 0.00 0.00 33.91 3.18
3226 3673 1.615919 GGGTCATTTGTCCCGGTTCAT 60.616 52.381 0.00 0.00 33.91 2.57
3227 3674 2.356330 GGGTCATTTGTCCCGGTTCATA 60.356 50.000 0.00 0.00 33.91 2.15
3228 3675 3.349022 GGTCATTTGTCCCGGTTCATAA 58.651 45.455 0.00 0.00 0.00 1.90
3229 3676 3.377172 GGTCATTTGTCCCGGTTCATAAG 59.623 47.826 0.00 0.00 0.00 1.73
3230 3677 3.377172 GTCATTTGTCCCGGTTCATAAGG 59.623 47.826 0.00 0.00 0.00 2.69
3231 3678 1.828979 TTTGTCCCGGTTCATAAGGC 58.171 50.000 0.00 0.00 0.00 4.35
3232 3679 0.034863 TTGTCCCGGTTCATAAGGCC 60.035 55.000 0.00 0.00 0.00 5.19
3233 3680 1.153025 GTCCCGGTTCATAAGGCCC 60.153 63.158 0.00 0.00 0.00 5.80
3234 3681 1.616930 TCCCGGTTCATAAGGCCCA 60.617 57.895 0.00 0.00 0.00 5.36
3235 3682 0.991355 TCCCGGTTCATAAGGCCCAT 60.991 55.000 0.00 0.00 0.00 4.00
3236 3683 0.106217 CCCGGTTCATAAGGCCCATT 60.106 55.000 0.00 0.00 0.00 3.16
3237 3684 1.687996 CCCGGTTCATAAGGCCCATTT 60.688 52.381 0.00 0.00 0.00 2.32
3238 3685 1.408702 CCGGTTCATAAGGCCCATTTG 59.591 52.381 0.00 0.00 0.00 2.32
3239 3686 2.099405 CGGTTCATAAGGCCCATTTGT 58.901 47.619 0.00 0.00 0.00 2.83
3240 3687 2.099098 CGGTTCATAAGGCCCATTTGTC 59.901 50.000 0.00 0.00 0.00 3.18
3241 3688 3.365472 GGTTCATAAGGCCCATTTGTCT 58.635 45.455 0.00 0.00 0.00 3.41
3242 3689 3.381590 GGTTCATAAGGCCCATTTGTCTC 59.618 47.826 0.00 0.00 0.00 3.36
3243 3690 4.016444 GTTCATAAGGCCCATTTGTCTCA 58.984 43.478 0.00 0.00 0.00 3.27
3244 3691 4.314522 TCATAAGGCCCATTTGTCTCAA 57.685 40.909 0.00 0.00 0.00 3.02
3245 3692 4.272489 TCATAAGGCCCATTTGTCTCAAG 58.728 43.478 0.00 0.00 0.00 3.02
3246 3693 1.928868 AAGGCCCATTTGTCTCAAGG 58.071 50.000 0.00 0.00 0.00 3.61
3247 3694 0.040204 AGGCCCATTTGTCTCAAGGG 59.960 55.000 0.00 0.00 42.55 3.95
3248 3695 0.251787 GGCCCATTTGTCTCAAGGGT 60.252 55.000 0.00 0.00 41.67 4.34
3249 3696 1.177401 GCCCATTTGTCTCAAGGGTC 58.823 55.000 0.00 0.00 41.67 4.46
3250 3697 1.453155 CCCATTTGTCTCAAGGGTCG 58.547 55.000 0.00 0.00 34.75 4.79
3251 3698 1.453155 CCATTTGTCTCAAGGGTCGG 58.547 55.000 0.00 0.00 0.00 4.79
3252 3699 1.271379 CCATTTGTCTCAAGGGTCGGT 60.271 52.381 0.00 0.00 0.00 4.69
3253 3700 2.027561 CCATTTGTCTCAAGGGTCGGTA 60.028 50.000 0.00 0.00 0.00 4.02
3254 3701 2.825861 TTTGTCTCAAGGGTCGGTAC 57.174 50.000 0.00 0.00 0.00 3.34
3255 3702 2.005370 TTGTCTCAAGGGTCGGTACT 57.995 50.000 0.00 0.00 0.00 2.73
3256 3703 2.885135 TGTCTCAAGGGTCGGTACTA 57.115 50.000 0.00 0.00 0.00 1.82
3257 3704 3.159213 TGTCTCAAGGGTCGGTACTAA 57.841 47.619 0.00 0.00 0.00 2.24
3258 3705 3.499338 TGTCTCAAGGGTCGGTACTAAA 58.501 45.455 0.00 0.00 0.00 1.85
3259 3706 3.508793 TGTCTCAAGGGTCGGTACTAAAG 59.491 47.826 0.00 0.00 0.00 1.85
3260 3707 2.494870 TCTCAAGGGTCGGTACTAAAGC 59.505 50.000 0.00 0.00 0.00 3.51
3261 3708 1.551883 TCAAGGGTCGGTACTAAAGCC 59.448 52.381 0.00 0.00 0.00 4.35
3262 3709 0.907486 AAGGGTCGGTACTAAAGCCC 59.093 55.000 0.00 0.00 36.46 5.19
3263 3710 0.042281 AGGGTCGGTACTAAAGCCCT 59.958 55.000 0.00 0.00 41.31 5.19
3264 3711 1.288932 AGGGTCGGTACTAAAGCCCTA 59.711 52.381 10.66 0.00 44.00 3.53
3265 3712 2.090887 AGGGTCGGTACTAAAGCCCTAT 60.091 50.000 10.66 0.00 44.00 2.57
3266 3713 3.140895 AGGGTCGGTACTAAAGCCCTATA 59.859 47.826 10.66 0.00 44.00 1.31
3267 3714 3.256879 GGGTCGGTACTAAAGCCCTATAC 59.743 52.174 0.00 0.00 33.58 1.47
3268 3715 3.256879 GGTCGGTACTAAAGCCCTATACC 59.743 52.174 0.00 0.00 33.35 2.73
3269 3716 4.148079 GTCGGTACTAAAGCCCTATACCT 58.852 47.826 0.00 0.00 34.34 3.08
3270 3717 4.586421 GTCGGTACTAAAGCCCTATACCTT 59.414 45.833 0.00 0.00 34.34 3.50
3271 3718 5.069648 GTCGGTACTAAAGCCCTATACCTTT 59.930 44.000 0.00 0.00 34.34 3.11
3272 3719 6.265422 GTCGGTACTAAAGCCCTATACCTTTA 59.735 42.308 0.00 0.00 34.34 1.85
3278 3725 5.532664 AAAGCCCTATACCTTTAGTCTCG 57.467 43.478 0.00 0.00 30.03 4.04
3279 3726 3.498334 AGCCCTATACCTTTAGTCTCGG 58.502 50.000 0.00 0.00 0.00 4.63
3280 3727 3.117208 AGCCCTATACCTTTAGTCTCGGT 60.117 47.826 0.00 0.00 34.86 4.69
3281 3728 3.640498 GCCCTATACCTTTAGTCTCGGTT 59.360 47.826 0.00 0.00 32.36 4.44
3282 3729 4.261952 GCCCTATACCTTTAGTCTCGGTTC 60.262 50.000 0.00 0.00 32.36 3.62
3283 3730 5.139001 CCCTATACCTTTAGTCTCGGTTCT 58.861 45.833 0.00 0.00 32.36 3.01
3284 3731 5.597594 CCCTATACCTTTAGTCTCGGTTCTT 59.402 44.000 0.00 0.00 32.36 2.52
3285 3732 6.774656 CCCTATACCTTTAGTCTCGGTTCTTA 59.225 42.308 0.00 0.00 32.36 2.10
3286 3733 7.450944 CCCTATACCTTTAGTCTCGGTTCTTAT 59.549 40.741 0.00 0.00 32.36 1.73
3287 3734 9.512588 CCTATACCTTTAGTCTCGGTTCTTATA 57.487 37.037 0.00 0.00 32.36 0.98
3289 3736 6.462552 ACCTTTAGTCTCGGTTCTTATACC 57.537 41.667 0.00 0.00 34.72 2.73
3290 3737 5.954150 ACCTTTAGTCTCGGTTCTTATACCA 59.046 40.000 0.00 0.00 38.12 3.25
3291 3738 6.438425 ACCTTTAGTCTCGGTTCTTATACCAA 59.562 38.462 0.00 0.00 38.12 3.67
3292 3739 6.755607 CCTTTAGTCTCGGTTCTTATACCAAC 59.244 42.308 0.00 0.00 38.12 3.77
3293 3740 4.732672 AGTCTCGGTTCTTATACCAACC 57.267 45.455 2.87 2.87 38.12 3.77
3294 3741 4.091549 AGTCTCGGTTCTTATACCAACCA 58.908 43.478 11.09 0.93 42.07 3.67
3295 3742 4.159879 AGTCTCGGTTCTTATACCAACCAG 59.840 45.833 11.09 8.13 42.07 4.00
3296 3743 3.449737 TCTCGGTTCTTATACCAACCAGG 59.550 47.826 11.09 0.00 42.07 4.45
3297 3744 3.443052 TCGGTTCTTATACCAACCAGGA 58.557 45.455 11.09 1.20 42.07 3.86
3298 3745 3.196254 TCGGTTCTTATACCAACCAGGAC 59.804 47.826 11.09 0.00 42.07 3.85
3299 3746 3.055675 CGGTTCTTATACCAACCAGGACA 60.056 47.826 11.09 0.00 42.07 4.02
3300 3747 4.514401 GGTTCTTATACCAACCAGGACAG 58.486 47.826 0.00 0.00 41.65 3.51
3301 3748 4.224370 GGTTCTTATACCAACCAGGACAGA 59.776 45.833 0.00 0.00 41.65 3.41
3302 3749 5.104485 GGTTCTTATACCAACCAGGACAGAT 60.104 44.000 0.00 0.00 41.65 2.90
3303 3750 5.614324 TCTTATACCAACCAGGACAGATG 57.386 43.478 0.00 0.00 41.22 2.90
3304 3751 4.408921 TCTTATACCAACCAGGACAGATGG 59.591 45.833 0.00 0.00 43.87 3.51
3305 3752 1.285280 TACCAACCAGGACAGATGGG 58.715 55.000 0.00 0.00 42.48 4.00
3306 3753 1.304282 CCAACCAGGACAGATGGGG 59.696 63.158 0.00 0.00 42.48 4.96
3307 3754 1.379044 CAACCAGGACAGATGGGGC 60.379 63.158 0.00 0.00 42.48 5.80
3308 3755 1.542375 AACCAGGACAGATGGGGCT 60.542 57.895 0.00 0.00 42.48 5.19
3309 3756 1.566298 AACCAGGACAGATGGGGCTC 61.566 60.000 0.00 0.00 42.48 4.70
3310 3757 2.750657 CCAGGACAGATGGGGCTCC 61.751 68.421 0.00 0.00 33.94 4.70
3352 3799 2.526624 GCAGGGGGCCTTTTTGGT 60.527 61.111 0.84 0.00 38.35 3.67
3353 3800 2.583441 GCAGGGGGCCTTTTTGGTC 61.583 63.158 0.84 0.00 40.45 4.02
3358 3805 4.434483 GGCCTTTTTGGTCCCGAT 57.566 55.556 0.00 0.00 38.35 4.18
3359 3806 2.666085 GGCCTTTTTGGTCCCGATT 58.334 52.632 0.00 0.00 38.35 3.34
3360 3807 0.246360 GGCCTTTTTGGTCCCGATTG 59.754 55.000 0.00 0.00 38.35 2.67
3361 3808 0.246360 GCCTTTTTGGTCCCGATTGG 59.754 55.000 0.00 0.00 38.35 3.16
3362 3809 1.627864 CCTTTTTGGTCCCGATTGGT 58.372 50.000 0.00 0.00 34.77 3.67
3363 3810 1.272212 CCTTTTTGGTCCCGATTGGTG 59.728 52.381 0.00 0.00 34.77 4.17
3364 3811 1.272212 CTTTTTGGTCCCGATTGGTGG 59.728 52.381 0.00 0.00 34.77 4.61
3365 3812 1.182385 TTTTGGTCCCGATTGGTGGC 61.182 55.000 0.00 0.00 34.77 5.01
3366 3813 2.359015 TTTGGTCCCGATTGGTGGCA 62.359 55.000 0.00 0.00 34.77 4.92
3367 3814 2.750237 GGTCCCGATTGGTGGCAC 60.750 66.667 9.70 9.70 34.77 5.01
3368 3815 2.750237 GTCCCGATTGGTGGCACC 60.750 66.667 29.75 29.75 39.22 5.01
3380 3827 4.589675 GGCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
3381 3828 2.282887 GCACCAACCGGGACCAAT 60.283 61.111 6.32 0.00 41.15 3.16
3382 3829 1.001887 GCACCAACCGGGACCAATA 60.002 57.895 6.32 0.00 41.15 1.90
3383 3830 0.609681 GCACCAACCGGGACCAATAA 60.610 55.000 6.32 0.00 41.15 1.40
3384 3831 1.459450 CACCAACCGGGACCAATAAG 58.541 55.000 6.32 0.00 41.15 1.73
3385 3832 0.323087 ACCAACCGGGACCAATAAGC 60.323 55.000 6.32 0.00 41.15 3.09
3386 3833 0.034477 CCAACCGGGACCAATAAGCT 60.034 55.000 6.32 0.00 40.01 3.74
3387 3834 1.615919 CCAACCGGGACCAATAAGCTT 60.616 52.381 6.32 3.48 40.01 3.74
3388 3835 1.743394 CAACCGGGACCAATAAGCTTC 59.257 52.381 6.32 0.00 0.00 3.86
3389 3836 0.255033 ACCGGGACCAATAAGCTTCC 59.745 55.000 6.32 0.00 0.00 3.46
3390 3837 0.254747 CCGGGACCAATAAGCTTCCA 59.745 55.000 0.00 0.00 0.00 3.53
3391 3838 1.379527 CGGGACCAATAAGCTTCCAC 58.620 55.000 0.00 0.00 0.00 4.02
3392 3839 1.379527 GGGACCAATAAGCTTCCACG 58.620 55.000 0.00 0.00 0.00 4.94
3393 3840 0.733150 GGACCAATAAGCTTCCACGC 59.267 55.000 0.00 0.00 0.00 5.34
3394 3841 0.373716 GACCAATAAGCTTCCACGCG 59.626 55.000 3.53 3.53 34.40 6.01
3395 3842 0.321298 ACCAATAAGCTTCCACGCGT 60.321 50.000 5.58 5.58 34.40 6.01
3396 3843 0.373716 CCAATAAGCTTCCACGCGTC 59.626 55.000 9.86 0.00 34.40 5.19
3397 3844 1.075542 CAATAAGCTTCCACGCGTCA 58.924 50.000 9.86 0.00 34.40 4.35
3398 3845 1.061131 CAATAAGCTTCCACGCGTCAG 59.939 52.381 9.86 7.06 34.40 3.51
3399 3846 1.084370 ATAAGCTTCCACGCGTCAGC 61.084 55.000 21.48 21.48 40.74 4.26
3400 3847 2.428960 TAAGCTTCCACGCGTCAGCA 62.429 55.000 27.43 12.05 45.49 4.41
3401 3848 3.782244 GCTTCCACGCGTCAGCAG 61.782 66.667 23.21 13.57 45.49 4.24
3402 3849 2.356313 CTTCCACGCGTCAGCAGT 60.356 61.111 9.86 0.00 45.49 4.40
3403 3850 1.956170 CTTCCACGCGTCAGCAGTT 60.956 57.895 9.86 0.00 45.49 3.16
3404 3851 1.891060 CTTCCACGCGTCAGCAGTTC 61.891 60.000 9.86 0.00 45.49 3.01
3405 3852 2.636778 TTCCACGCGTCAGCAGTTCA 62.637 55.000 9.86 0.00 45.49 3.18
3406 3853 2.661566 CCACGCGTCAGCAGTTCAG 61.662 63.158 9.86 0.00 45.49 3.02
3407 3854 2.356313 ACGCGTCAGCAGTTCAGG 60.356 61.111 5.58 0.00 45.49 3.86
3408 3855 3.114616 CGCGTCAGCAGTTCAGGG 61.115 66.667 0.00 0.00 45.49 4.45
3409 3856 2.743928 GCGTCAGCAGTTCAGGGG 60.744 66.667 0.00 0.00 44.35 4.79
3410 3857 2.743928 CGTCAGCAGTTCAGGGGC 60.744 66.667 0.00 0.00 0.00 5.80
3411 3858 2.753029 GTCAGCAGTTCAGGGGCT 59.247 61.111 0.00 0.00 38.70 5.19
3412 3859 1.888436 CGTCAGCAGTTCAGGGGCTA 61.888 60.000 0.00 0.00 35.82 3.93
3413 3860 0.107945 GTCAGCAGTTCAGGGGCTAG 60.108 60.000 0.00 0.00 35.82 3.42
3414 3861 1.222936 CAGCAGTTCAGGGGCTAGG 59.777 63.158 0.00 0.00 35.82 3.02
3415 3862 1.997874 AGCAGTTCAGGGGCTAGGG 60.998 63.158 0.00 0.00 35.82 3.53
3416 3863 2.301738 GCAGTTCAGGGGCTAGGGT 61.302 63.158 0.00 0.00 0.00 4.34
3417 3864 1.853250 GCAGTTCAGGGGCTAGGGTT 61.853 60.000 0.00 0.00 0.00 4.11
3418 3865 0.698818 CAGTTCAGGGGCTAGGGTTT 59.301 55.000 0.00 0.00 0.00 3.27
3419 3866 1.075536 CAGTTCAGGGGCTAGGGTTTT 59.924 52.381 0.00 0.00 0.00 2.43
3420 3867 1.787058 AGTTCAGGGGCTAGGGTTTTT 59.213 47.619 0.00 0.00 0.00 1.94
3421 3868 1.893137 GTTCAGGGGCTAGGGTTTTTG 59.107 52.381 0.00 0.00 0.00 2.44
3422 3869 1.154430 TCAGGGGCTAGGGTTTTTGT 58.846 50.000 0.00 0.00 0.00 2.83
3423 3870 1.501604 TCAGGGGCTAGGGTTTTTGTT 59.498 47.619 0.00 0.00 0.00 2.83
3424 3871 2.090999 TCAGGGGCTAGGGTTTTTGTTT 60.091 45.455 0.00 0.00 0.00 2.83
3425 3872 2.703536 CAGGGGCTAGGGTTTTTGTTTT 59.296 45.455 0.00 0.00 0.00 2.43
3426 3873 3.135712 CAGGGGCTAGGGTTTTTGTTTTT 59.864 43.478 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.489771 GGGACCCAGACATGGCGG 62.490 72.222 5.33 0.00 46.19 6.13
63 68 0.601558 TTCTCCGTCCGAGTCAAAGG 59.398 55.000 0.00 0.00 39.84 3.11
73 78 1.336125 CCGGTACTACATTCTCCGTCC 59.664 57.143 0.00 0.00 39.62 4.79
89 94 1.228894 TCCTCTGTTCTCTGCCGGT 60.229 57.895 1.90 0.00 0.00 5.28
93 98 1.552337 TGATGGTCCTCTGTTCTCTGC 59.448 52.381 0.00 0.00 0.00 4.26
127 134 2.037772 AGAACAGTGGAGTTGCTAGGTG 59.962 50.000 0.00 0.00 0.00 4.00
242 252 2.411701 GTGATCGTGATCCGGCGA 59.588 61.111 9.30 4.35 41.50 5.54
266 277 2.669133 CGGACAATGGAGAGGGGCA 61.669 63.158 0.00 0.00 0.00 5.36
295 306 5.165961 TGGAGTTCTCAAACTAATGAGGG 57.834 43.478 4.63 0.00 45.80 4.30
324 335 1.304381 GCATTCCCAAGTCCCAGCA 60.304 57.895 0.00 0.00 0.00 4.41
353 364 3.050089 GGCCACACCAAAATCAGGA 57.950 52.632 0.00 0.00 38.86 3.86
370 381 5.231702 CAGTAGCAGATGAGAATGAGATGG 58.768 45.833 0.00 0.00 0.00 3.51
530 541 6.037786 AGACACTTATTTTGAGACGGATGA 57.962 37.500 0.00 0.00 0.00 2.92
588 599 7.661847 CCCAAGATAAGTGTCTCAACTTTAGTT 59.338 37.037 0.00 0.00 40.77 2.24
589 600 7.016268 TCCCAAGATAAGTGTCTCAACTTTAGT 59.984 37.037 0.00 0.00 40.77 2.24
612 623 1.763545 GAGTGGTATTCCCTCTGTCCC 59.236 57.143 0.00 0.00 37.18 4.46
632 643 0.861837 GAAGCGTGAGAACAGTGTGG 59.138 55.000 0.00 0.00 0.00 4.17
633 644 1.858091 AGAAGCGTGAGAACAGTGTG 58.142 50.000 0.00 0.00 0.00 3.82
634 645 2.474816 GAAGAAGCGTGAGAACAGTGT 58.525 47.619 0.00 0.00 0.00 3.55
635 646 1.795286 GGAAGAAGCGTGAGAACAGTG 59.205 52.381 0.00 0.00 0.00 3.66
636 647 1.689273 AGGAAGAAGCGTGAGAACAGT 59.311 47.619 0.00 0.00 0.00 3.55
717 733 1.585261 TGATCGTGATTCGCCGACG 60.585 57.895 0.00 0.00 39.67 5.12
743 759 3.424105 GGCCAATGGAGAGGGGCT 61.424 66.667 2.05 0.00 45.68 5.19
794 811 2.609610 AAGTCCCGGCCAGCCTAA 60.610 61.111 2.24 0.00 0.00 2.69
804 821 2.485122 GCGCATTTCCAAGTCCCG 59.515 61.111 0.30 0.00 0.00 5.14
814 831 2.125106 GACCTCTCCCGCGCATTT 60.125 61.111 8.75 0.00 0.00 2.32
834 851 7.149973 CAGATGAGATGACCACAAACAAAATT 58.850 34.615 0.00 0.00 0.00 1.82
836 853 5.507817 GCAGATGAGATGACCACAAACAAAA 60.508 40.000 0.00 0.00 0.00 2.44
1017 1050 4.133796 GGCGCCCAAATCTGCACC 62.134 66.667 18.11 0.00 0.00 5.01
1041 1074 2.892425 CAATCGAGCGGGTCTGCC 60.892 66.667 5.58 0.00 34.65 4.85
1044 1077 4.162690 GGCCAATCGAGCGGGTCT 62.163 66.667 0.00 0.00 0.00 3.85
1109 1142 1.276421 TGAGAAGGGTAGCTGAGCAAC 59.724 52.381 7.39 0.00 0.00 4.17
1121 1154 3.834489 AGCATCAGTATGTGAGAAGGG 57.166 47.619 0.00 0.00 39.07 3.95
1134 1170 3.487711 GGTGAGTGTACGTCTAGCATCAG 60.488 52.174 0.00 0.00 0.00 2.90
1136 1172 2.683867 AGGTGAGTGTACGTCTAGCATC 59.316 50.000 0.00 0.00 0.00 3.91
1190 1461 6.760298 GGAGTAAATAAAAACGGAGGGAGTAG 59.240 42.308 0.00 0.00 0.00 2.57
1192 1463 5.494724 GGAGTAAATAAAAACGGAGGGAGT 58.505 41.667 0.00 0.00 0.00 3.85
1193 1464 4.569564 CGGAGTAAATAAAAACGGAGGGAG 59.430 45.833 0.00 0.00 0.00 4.30
1194 1465 4.506758 CGGAGTAAATAAAAACGGAGGGA 58.493 43.478 0.00 0.00 0.00 4.20
1196 1467 3.685756 TGCGGAGTAAATAAAAACGGAGG 59.314 43.478 0.00 0.00 0.00 4.30
1197 1468 4.932268 TGCGGAGTAAATAAAAACGGAG 57.068 40.909 0.00 0.00 0.00 4.63
1199 1470 9.537848 GATAATATGCGGAGTAAATAAAAACGG 57.462 33.333 0.00 0.00 0.00 4.44
1207 1478 9.725019 TGATCAAAGATAATATGCGGAGTAAAT 57.275 29.630 0.00 0.00 0.00 1.40
1208 1479 9.554395 TTGATCAAAGATAATATGCGGAGTAAA 57.446 29.630 5.45 0.00 0.00 2.01
1209 1480 9.554395 TTTGATCAAAGATAATATGCGGAGTAA 57.446 29.630 16.91 0.00 0.00 2.24
1234 1505 7.954788 TGTTAAAGTTTGCAAAGTTTGACTT 57.045 28.000 38.95 26.55 43.02 3.01
1235 1506 7.954788 TTGTTAAAGTTTGCAAAGTTTGACT 57.045 28.000 38.95 25.92 43.02 3.41
1236 1507 8.640119 CTTTGTTAAAGTTTGCAAAGTTTGAC 57.360 30.769 36.51 36.51 42.96 3.18
1403 1674 8.201554 TCTGCATATTATGTTTGACTGAAGTC 57.798 34.615 3.41 3.41 44.97 3.01
1404 1675 7.826252 ACTCTGCATATTATGTTTGACTGAAGT 59.174 33.333 5.60 0.00 0.00 3.01
1405 1676 8.206325 ACTCTGCATATTATGTTTGACTGAAG 57.794 34.615 5.60 0.00 0.00 3.02
1406 1677 9.665719 TTACTCTGCATATTATGTTTGACTGAA 57.334 29.630 5.60 0.00 0.00 3.02
1407 1678 9.665719 TTTACTCTGCATATTATGTTTGACTGA 57.334 29.630 5.60 0.00 0.00 3.41
1419 1690 8.621286 CCTCCGTTTTTATTTACTCTGCATATT 58.379 33.333 0.00 0.00 0.00 1.28
1420 1691 7.228706 CCCTCCGTTTTTATTTACTCTGCATAT 59.771 37.037 0.00 0.00 0.00 1.78
1421 1692 6.540914 CCCTCCGTTTTTATTTACTCTGCATA 59.459 38.462 0.00 0.00 0.00 3.14
1422 1693 5.357032 CCCTCCGTTTTTATTTACTCTGCAT 59.643 40.000 0.00 0.00 0.00 3.96
1423 1694 4.698304 CCCTCCGTTTTTATTTACTCTGCA 59.302 41.667 0.00 0.00 0.00 4.41
1424 1695 4.939439 TCCCTCCGTTTTTATTTACTCTGC 59.061 41.667 0.00 0.00 0.00 4.26
1425 1696 6.171213 ACTCCCTCCGTTTTTATTTACTCTG 58.829 40.000 0.00 0.00 0.00 3.35
1427 1698 7.603784 TGTTACTCCCTCCGTTTTTATTTACTC 59.396 37.037 0.00 0.00 0.00 2.59
1446 1717 5.238583 AGGTGAGTTACTGCAATGTTACTC 58.761 41.667 14.82 14.82 43.06 2.59
1449 1720 4.041075 TGGAGGTGAGTTACTGCAATGTTA 59.959 41.667 0.00 0.00 31.93 2.41
1452 1723 2.744202 GTGGAGGTGAGTTACTGCAATG 59.256 50.000 0.00 0.00 36.80 2.82
1453 1724 2.639839 AGTGGAGGTGAGTTACTGCAAT 59.360 45.455 0.00 0.00 36.80 3.56
1454 1725 2.037251 GAGTGGAGGTGAGTTACTGCAA 59.963 50.000 0.00 0.00 36.80 4.08
1455 1726 1.618837 GAGTGGAGGTGAGTTACTGCA 59.381 52.381 0.00 0.00 32.44 4.41
1456 1727 1.402984 CGAGTGGAGGTGAGTTACTGC 60.403 57.143 0.00 0.00 0.00 4.40
1457 1728 1.887198 ACGAGTGGAGGTGAGTTACTG 59.113 52.381 0.00 0.00 0.00 2.74
1460 1740 5.687780 TCATATACGAGTGGAGGTGAGTTA 58.312 41.667 0.00 0.00 0.00 2.24
1464 1744 5.186215 TGTTTTCATATACGAGTGGAGGTGA 59.814 40.000 0.00 0.00 0.00 4.02
1467 1747 6.370442 TGTTTGTTTTCATATACGAGTGGAGG 59.630 38.462 0.00 0.00 0.00 4.30
1493 1775 2.602676 GGAAGGCCCCTGCTACACA 61.603 63.158 0.00 0.00 37.74 3.72
1526 1808 4.127171 CGAACAGAGTTCCTTTTGAGGAA 58.873 43.478 3.84 3.84 44.90 3.36
1527 1809 3.494398 CCGAACAGAGTTCCTTTTGAGGA 60.494 47.826 4.47 0.00 35.93 3.71
1528 1810 2.808543 CCGAACAGAGTTCCTTTTGAGG 59.191 50.000 4.47 0.00 0.00 3.86
1529 1811 2.224314 GCCGAACAGAGTTCCTTTTGAG 59.776 50.000 4.47 0.00 0.00 3.02
1530 1812 2.218603 GCCGAACAGAGTTCCTTTTGA 58.781 47.619 4.47 0.00 0.00 2.69
1531 1813 1.946768 TGCCGAACAGAGTTCCTTTTG 59.053 47.619 4.47 0.00 0.00 2.44
1546 1847 1.536907 TCTAGGGGTTTGGTGCCGA 60.537 57.895 0.00 0.00 0.00 5.54
1558 1859 3.200825 AGATGGTTGGATTGTGTCTAGGG 59.799 47.826 0.00 0.00 0.00 3.53
1618 1929 8.807118 TCTTCCACCTGTCATGAATAGATATAC 58.193 37.037 0.00 0.00 0.00 1.47
1667 1978 1.753141 GCTGATTCCCATGCCATCAGT 60.753 52.381 19.93 0.00 44.00 3.41
1708 2019 3.527253 ACATGGTACCTCCCAAATCATCA 59.473 43.478 14.36 0.00 38.20 3.07
1734 2067 8.191534 TGGAAATACTAGAAAGGATAGCCTAC 57.808 38.462 0.00 0.00 46.28 3.18
1737 2070 7.068686 ACTGGAAATACTAGAAAGGATAGCC 57.931 40.000 0.00 0.00 0.00 3.93
1782 2119 8.246908 TGATGAGCTTGCAAATATTCAAAAAG 57.753 30.769 0.00 0.00 0.00 2.27
1908 2245 2.731968 CGGTGAAAATTCATGCTTCCGG 60.732 50.000 11.97 0.00 37.85 5.14
1913 2250 2.422597 TCGACGGTGAAAATTCATGCT 58.577 42.857 0.00 0.00 39.73 3.79
1991 2328 0.311790 CATCGCCCAACACCATATGC 59.688 55.000 0.00 0.00 0.00 3.14
2039 2376 1.028868 GCTGGGTCTGGAACTGATGC 61.029 60.000 0.00 0.00 38.85 3.91
2049 2386 1.678123 CCTTGAGATGTGCTGGGTCTG 60.678 57.143 0.00 0.00 0.00 3.51
2072 2422 0.673437 ACAACTTCAATGGTTGCCCG 59.327 50.000 6.51 0.00 45.34 6.13
2079 2429 8.028938 CCAACCTAATAGAAACAACTTCAATGG 58.971 37.037 0.00 0.00 36.40 3.16
2094 2444 9.289782 CTTTGATATTCTTCCCCAACCTAATAG 57.710 37.037 0.00 0.00 0.00 1.73
2156 2512 6.088016 TCCATTTGTCCTGAAACATGAAAG 57.912 37.500 0.00 0.00 0.00 2.62
2193 2549 2.359478 CACGGTACCCCACAAGCC 60.359 66.667 6.25 0.00 0.00 4.35
2205 2561 2.357517 CTTTGAGAGGCGCACGGT 60.358 61.111 10.83 0.00 0.00 4.83
2264 2621 3.960571 ACTTGGAATTCCTCATGGAGTG 58.039 45.455 24.73 7.19 44.24 3.51
2334 2691 3.889520 AAGGGTCGGAACATAGTCTTC 57.110 47.619 0.00 0.00 0.00 2.87
2349 2706 5.529289 TGGATCAACTCTGTATCTAAGGGT 58.471 41.667 0.00 0.00 0.00 4.34
2391 2748 2.300152 GGATGTGGAGGCTGAATCGATA 59.700 50.000 0.00 0.00 0.00 2.92
2412 2769 3.067461 TCCCACGGTGTTTCTTCATTTTG 59.933 43.478 7.45 0.00 0.00 2.44
2505 2863 8.564574 CAAAAGAAGTAACACATTTAGGTGCTA 58.435 33.333 0.00 0.00 42.55 3.49
2507 2865 7.422399 TCAAAAGAAGTAACACATTTAGGTGC 58.578 34.615 0.00 0.00 42.55 5.01
2528 2886 8.316946 TGTATGCACATATTTCCCAATTTCAAA 58.683 29.630 0.00 0.00 0.00 2.69
2606 2971 5.869344 CAGTGCACAATTTCTAGCTACAGTA 59.131 40.000 21.04 0.00 0.00 2.74
2607 2972 4.692625 CAGTGCACAATTTCTAGCTACAGT 59.307 41.667 21.04 0.00 0.00 3.55
2608 2973 4.692625 ACAGTGCACAATTTCTAGCTACAG 59.307 41.667 21.04 0.00 0.00 2.74
2609 2974 4.641396 ACAGTGCACAATTTCTAGCTACA 58.359 39.130 21.04 0.00 0.00 2.74
2655 3020 5.468746 AGAGCGTTTTTGACACTAATGCTAA 59.531 36.000 12.90 0.00 42.46 3.09
2671 3036 9.877178 CCTCCATCTTATAATATAAGAGCGTTT 57.123 33.333 22.46 7.73 37.04 3.60
2672 3037 8.478877 CCCTCCATCTTATAATATAAGAGCGTT 58.521 37.037 22.46 8.03 37.04 4.84
2673 3038 7.839705 TCCCTCCATCTTATAATATAAGAGCGT 59.160 37.037 22.46 8.32 37.04 5.07
2674 3039 8.239038 TCCCTCCATCTTATAATATAAGAGCG 57.761 38.462 22.46 16.91 37.04 5.03
2675 3040 9.207868 ACTCCCTCCATCTTATAATATAAGAGC 57.792 37.037 22.46 0.00 37.04 4.09
2691 3056 2.683768 GACAGATGGTACTCCCTCCAT 58.316 52.381 0.00 0.00 45.69 3.41
2693 3058 1.062810 AGGACAGATGGTACTCCCTCC 60.063 57.143 0.00 0.00 34.84 4.30
2694 3059 2.463047 AGGACAGATGGTACTCCCTC 57.537 55.000 0.00 0.00 34.84 4.30
2695 3060 4.561254 AATAGGACAGATGGTACTCCCT 57.439 45.455 0.00 0.00 40.90 4.20
2696 3061 7.620094 ACATATAATAGGACAGATGGTACTCCC 59.380 40.741 0.00 0.00 40.90 4.30
2697 3062 8.596781 ACATATAATAGGACAGATGGTACTCC 57.403 38.462 0.00 0.00 40.90 3.85
2698 3063 9.244292 TGACATATAATAGGACAGATGGTACTC 57.756 37.037 0.00 0.00 40.90 2.59
2699 3064 9.601810 TTGACATATAATAGGACAGATGGTACT 57.398 33.333 0.00 0.00 45.03 2.73
2725 3150 5.337578 ACTAACAAGTGCATGGTGTTTTT 57.662 34.783 15.11 3.74 36.83 1.94
2746 3171 7.882179 ACCCACTATCAAGAAATGTTTTGTAC 58.118 34.615 0.00 0.00 0.00 2.90
2864 3291 3.179048 TCGCACATTGACGAAGATACAG 58.821 45.455 0.00 0.00 34.93 2.74
2865 3292 3.224884 TCGCACATTGACGAAGATACA 57.775 42.857 0.00 0.00 34.93 2.29
2883 3310 4.796830 CACAATCTTCCATTGCAAAGATCG 59.203 41.667 1.71 0.00 40.47 3.69
2885 3312 4.222145 AGCACAATCTTCCATTGCAAAGAT 59.778 37.500 1.71 4.19 42.56 2.40
2976 3423 1.915489 TGGATGACTGCCCATGTAACT 59.085 47.619 0.00 0.00 0.00 2.24
3053 3500 3.573598 TGCGTTTTCATGTAGCCAATTG 58.426 40.909 0.00 0.00 0.00 2.32
3070 3517 2.019249 CTTCCACCATCATCAATGCGT 58.981 47.619 0.00 0.00 33.71 5.24
3080 3527 2.700773 GGTTGCCGCTTCCACCATC 61.701 63.158 0.00 0.00 0.00 3.51
3092 3539 3.244181 ACAATGACCAAATCAAGGTTGCC 60.244 43.478 0.00 0.00 41.93 4.52
3152 3599 4.142359 CGATAACCTGCAACAGAGAGTAGT 60.142 45.833 0.00 0.00 32.44 2.73
3160 3607 3.859961 CACTAGACGATAACCTGCAACAG 59.140 47.826 0.00 0.00 0.00 3.16
3165 3612 3.982058 GCATACACTAGACGATAACCTGC 59.018 47.826 0.00 0.00 0.00 4.85
3175 3622 4.985538 AGTGGTACTGCATACACTAGAC 57.014 45.455 9.94 0.00 35.23 2.59
3201 3648 1.967779 CCGGGACAAATGACCCTTTTT 59.032 47.619 16.90 0.00 45.84 1.94
3202 3649 1.133294 ACCGGGACAAATGACCCTTTT 60.133 47.619 16.90 0.90 45.84 2.27
3203 3650 0.481128 ACCGGGACAAATGACCCTTT 59.519 50.000 16.90 3.08 45.84 3.11
3204 3651 0.481128 AACCGGGACAAATGACCCTT 59.519 50.000 16.90 4.87 45.84 3.95
3205 3652 0.037734 GAACCGGGACAAATGACCCT 59.962 55.000 16.90 0.84 45.84 4.34
3206 3653 0.250989 TGAACCGGGACAAATGACCC 60.251 55.000 6.32 10.44 44.81 4.46
3207 3654 1.834188 ATGAACCGGGACAAATGACC 58.166 50.000 6.32 0.00 0.00 4.02
3208 3655 3.377172 CCTTATGAACCGGGACAAATGAC 59.623 47.826 6.32 0.00 0.00 3.06
3209 3656 3.616219 CCTTATGAACCGGGACAAATGA 58.384 45.455 6.32 0.00 0.00 2.57
3210 3657 2.099098 GCCTTATGAACCGGGACAAATG 59.901 50.000 6.32 0.20 0.00 2.32
3211 3658 2.375146 GCCTTATGAACCGGGACAAAT 58.625 47.619 6.32 0.00 0.00 2.32
3212 3659 1.614850 GGCCTTATGAACCGGGACAAA 60.615 52.381 6.32 2.62 0.00 2.83
3213 3660 0.034863 GGCCTTATGAACCGGGACAA 60.035 55.000 6.32 0.00 0.00 3.18
3214 3661 1.605453 GGCCTTATGAACCGGGACA 59.395 57.895 6.32 5.75 0.00 4.02
3215 3662 1.153025 GGGCCTTATGAACCGGGAC 60.153 63.158 6.32 0.00 0.00 4.46
3216 3663 0.991355 ATGGGCCTTATGAACCGGGA 60.991 55.000 6.32 0.00 0.00 5.14
3217 3664 0.106217 AATGGGCCTTATGAACCGGG 60.106 55.000 6.32 0.00 0.00 5.73
3218 3665 1.408702 CAAATGGGCCTTATGAACCGG 59.591 52.381 4.53 0.00 0.00 5.28
3219 3666 2.099098 GACAAATGGGCCTTATGAACCG 59.901 50.000 4.53 0.00 0.00 4.44
3220 3667 3.365472 AGACAAATGGGCCTTATGAACC 58.635 45.455 4.53 0.00 0.00 3.62
3221 3668 4.016444 TGAGACAAATGGGCCTTATGAAC 58.984 43.478 4.53 1.75 0.00 3.18
3222 3669 4.314522 TGAGACAAATGGGCCTTATGAA 57.685 40.909 4.53 0.00 0.00 2.57
3223 3670 4.272489 CTTGAGACAAATGGGCCTTATGA 58.728 43.478 4.53 0.00 0.00 2.15
3224 3671 3.382546 CCTTGAGACAAATGGGCCTTATG 59.617 47.826 4.53 3.10 0.00 1.90
3225 3672 3.628257 CCCTTGAGACAAATGGGCCTTAT 60.628 47.826 4.53 0.00 0.00 1.73
3226 3673 2.291540 CCCTTGAGACAAATGGGCCTTA 60.292 50.000 4.53 0.00 0.00 2.69
3227 3674 1.550869 CCCTTGAGACAAATGGGCCTT 60.551 52.381 4.53 0.00 0.00 4.35
3228 3675 0.040204 CCCTTGAGACAAATGGGCCT 59.960 55.000 4.53 0.00 0.00 5.19
3229 3676 0.251787 ACCCTTGAGACAAATGGGCC 60.252 55.000 0.00 0.00 41.44 5.80
3230 3677 1.177401 GACCCTTGAGACAAATGGGC 58.823 55.000 8.18 0.80 41.44 5.36
3231 3678 1.453155 CGACCCTTGAGACAAATGGG 58.547 55.000 0.00 0.00 43.26 4.00
3232 3679 1.271379 ACCGACCCTTGAGACAAATGG 60.271 52.381 0.00 0.00 0.00 3.16
3233 3680 2.185004 ACCGACCCTTGAGACAAATG 57.815 50.000 0.00 0.00 0.00 2.32
3234 3681 2.904434 AGTACCGACCCTTGAGACAAAT 59.096 45.455 0.00 0.00 0.00 2.32
3235 3682 2.322658 AGTACCGACCCTTGAGACAAA 58.677 47.619 0.00 0.00 0.00 2.83
3236 3683 2.005370 AGTACCGACCCTTGAGACAA 57.995 50.000 0.00 0.00 0.00 3.18
3237 3684 2.885135 TAGTACCGACCCTTGAGACA 57.115 50.000 0.00 0.00 0.00 3.41
3238 3685 3.675502 GCTTTAGTACCGACCCTTGAGAC 60.676 52.174 0.00 0.00 0.00 3.36
3239 3686 2.494870 GCTTTAGTACCGACCCTTGAGA 59.505 50.000 0.00 0.00 0.00 3.27
3240 3687 2.418334 GGCTTTAGTACCGACCCTTGAG 60.418 54.545 0.00 0.00 0.00 3.02
3241 3688 1.551883 GGCTTTAGTACCGACCCTTGA 59.448 52.381 0.00 0.00 0.00 3.02
3242 3689 1.406477 GGGCTTTAGTACCGACCCTTG 60.406 57.143 0.00 0.00 34.34 3.61
3243 3690 0.907486 GGGCTTTAGTACCGACCCTT 59.093 55.000 0.00 0.00 34.34 3.95
3244 3691 0.042281 AGGGCTTTAGTACCGACCCT 59.958 55.000 4.22 4.22 42.97 4.34
3245 3692 1.780503 TAGGGCTTTAGTACCGACCC 58.219 55.000 0.00 0.00 37.63 4.46
3246 3693 3.256879 GGTATAGGGCTTTAGTACCGACC 59.743 52.174 0.00 0.00 0.00 4.79
3247 3694 4.148079 AGGTATAGGGCTTTAGTACCGAC 58.852 47.826 0.00 0.00 39.74 4.79
3248 3695 4.459852 AGGTATAGGGCTTTAGTACCGA 57.540 45.455 0.00 0.00 39.74 4.69
3249 3696 5.541953 AAAGGTATAGGGCTTTAGTACCG 57.458 43.478 0.00 0.00 39.74 4.02
3250 3697 7.508636 AGACTAAAGGTATAGGGCTTTAGTACC 59.491 40.741 6.31 0.00 46.28 3.34
3251 3698 8.476064 AGACTAAAGGTATAGGGCTTTAGTAC 57.524 38.462 6.31 1.04 46.28 2.73
3252 3699 7.446625 CGAGACTAAAGGTATAGGGCTTTAGTA 59.553 40.741 6.31 0.00 46.28 1.82
3254 3701 6.294620 CCGAGACTAAAGGTATAGGGCTTTAG 60.295 46.154 1.97 1.97 42.08 1.85
3255 3702 5.537674 CCGAGACTAAAGGTATAGGGCTTTA 59.462 44.000 0.00 0.00 30.05 1.85
3256 3703 4.344390 CCGAGACTAAAGGTATAGGGCTTT 59.656 45.833 0.00 0.00 30.05 3.51
3257 3704 3.896272 CCGAGACTAAAGGTATAGGGCTT 59.104 47.826 0.00 0.00 30.05 4.35
3258 3705 3.117208 ACCGAGACTAAAGGTATAGGGCT 60.117 47.826 0.00 0.00 36.46 5.19
3259 3706 3.229293 ACCGAGACTAAAGGTATAGGGC 58.771 50.000 0.00 0.00 36.46 5.19
3260 3707 5.139001 AGAACCGAGACTAAAGGTATAGGG 58.861 45.833 0.00 0.00 36.46 3.53
3261 3708 6.712179 AAGAACCGAGACTAAAGGTATAGG 57.288 41.667 0.00 0.00 37.81 2.57
3263 3710 9.289782 GGTATAAGAACCGAGACTAAAGGTATA 57.710 37.037 0.00 0.00 37.26 1.47
3264 3711 7.781693 TGGTATAAGAACCGAGACTAAAGGTAT 59.218 37.037 0.00 0.00 42.91 2.73
3265 3712 7.118723 TGGTATAAGAACCGAGACTAAAGGTA 58.881 38.462 0.00 0.00 42.91 3.08
3266 3713 5.954150 TGGTATAAGAACCGAGACTAAAGGT 59.046 40.000 0.00 0.00 42.91 3.50
3267 3714 6.461110 TGGTATAAGAACCGAGACTAAAGG 57.539 41.667 0.00 0.00 42.91 3.11
3268 3715 6.755607 GGTTGGTATAAGAACCGAGACTAAAG 59.244 42.308 0.00 0.00 42.91 1.85
3269 3716 6.211184 TGGTTGGTATAAGAACCGAGACTAAA 59.789 38.462 8.82 0.00 44.04 1.85
3270 3717 5.716228 TGGTTGGTATAAGAACCGAGACTAA 59.284 40.000 8.82 0.00 44.04 2.24
3271 3718 5.263599 TGGTTGGTATAAGAACCGAGACTA 58.736 41.667 8.82 0.00 44.04 2.59
3272 3719 4.091549 TGGTTGGTATAAGAACCGAGACT 58.908 43.478 8.82 0.00 44.04 3.24
3273 3720 4.430908 CTGGTTGGTATAAGAACCGAGAC 58.569 47.826 8.82 0.00 44.04 3.36
3274 3721 3.449737 CCTGGTTGGTATAAGAACCGAGA 59.550 47.826 8.82 0.00 44.04 4.04
3275 3722 3.449737 TCCTGGTTGGTATAAGAACCGAG 59.550 47.826 8.82 7.59 44.04 4.63
3276 3723 3.196254 GTCCTGGTTGGTATAAGAACCGA 59.804 47.826 8.82 0.91 44.04 4.69
3277 3724 3.055675 TGTCCTGGTTGGTATAAGAACCG 60.056 47.826 8.82 5.11 44.04 4.44
3278 3725 4.224370 TCTGTCCTGGTTGGTATAAGAACC 59.776 45.833 7.07 7.07 41.85 3.62
3279 3726 5.416271 TCTGTCCTGGTTGGTATAAGAAC 57.584 43.478 0.00 0.00 37.07 3.01
3280 3727 5.104527 CCATCTGTCCTGGTTGGTATAAGAA 60.105 44.000 0.00 0.00 37.07 2.52
3281 3728 4.408921 CCATCTGTCCTGGTTGGTATAAGA 59.591 45.833 0.00 0.00 37.07 2.10
3282 3729 4.444876 CCCATCTGTCCTGGTTGGTATAAG 60.445 50.000 0.00 0.00 37.07 1.73
3283 3730 3.458118 CCCATCTGTCCTGGTTGGTATAA 59.542 47.826 0.00 0.00 37.07 0.98
3284 3731 3.045634 CCCATCTGTCCTGGTTGGTATA 58.954 50.000 0.00 0.00 37.07 1.47
3285 3732 1.846439 CCCATCTGTCCTGGTTGGTAT 59.154 52.381 0.00 0.00 37.07 2.73
3286 3733 1.285280 CCCATCTGTCCTGGTTGGTA 58.715 55.000 0.00 0.00 37.07 3.25
3287 3734 1.500783 CCCCATCTGTCCTGGTTGGT 61.501 60.000 0.00 0.00 37.07 3.67
3288 3735 1.304282 CCCCATCTGTCCTGGTTGG 59.696 63.158 0.00 0.00 31.44 3.77
3289 3736 1.379044 GCCCCATCTGTCCTGGTTG 60.379 63.158 0.00 0.00 31.44 3.77
3290 3737 1.542375 AGCCCCATCTGTCCTGGTT 60.542 57.895 0.00 0.00 31.44 3.67
3291 3738 1.997874 GAGCCCCATCTGTCCTGGT 60.998 63.158 0.00 0.00 31.44 4.00
3292 3739 2.750657 GGAGCCCCATCTGTCCTGG 61.751 68.421 0.00 0.00 0.00 4.45
3293 3740 1.997311 TGGAGCCCCATCTGTCCTG 60.997 63.158 0.00 0.00 37.58 3.86
3294 3741 1.997874 GTGGAGCCCCATCTGTCCT 60.998 63.158 0.00 0.00 45.68 3.85
3295 3742 2.592308 GTGGAGCCCCATCTGTCC 59.408 66.667 0.00 0.00 45.68 4.02
3296 3743 2.187946 CGTGGAGCCCCATCTGTC 59.812 66.667 0.00 0.00 45.68 3.51
3297 3744 2.607750 ACGTGGAGCCCCATCTGT 60.608 61.111 0.00 0.00 45.68 3.41
3298 3745 2.124983 CACGTGGAGCCCCATCTG 60.125 66.667 7.95 0.00 45.68 2.90
3299 3746 3.402681 CCACGTGGAGCCCCATCT 61.403 66.667 31.31 0.00 45.68 2.90
3335 3782 2.526624 ACCAAAAAGGCCCCCTGC 60.527 61.111 0.00 0.00 43.14 4.85
3336 3783 1.913262 GGACCAAAAAGGCCCCCTG 60.913 63.158 0.00 0.00 43.14 4.45
3337 3784 2.531326 GGACCAAAAAGGCCCCCT 59.469 61.111 0.00 0.00 43.14 4.79
3340 3787 0.902984 AATCGGGACCAAAAAGGCCC 60.903 55.000 0.00 0.00 45.24 5.80
3341 3788 0.246360 CAATCGGGACCAAAAAGGCC 59.754 55.000 0.00 0.00 43.14 5.19
3342 3789 0.246360 CCAATCGGGACCAAAAAGGC 59.754 55.000 0.00 0.00 43.14 4.35
3343 3790 1.272212 CACCAATCGGGACCAAAAAGG 59.728 52.381 0.00 0.00 41.62 3.11
3344 3791 1.272212 CCACCAATCGGGACCAAAAAG 59.728 52.381 0.00 0.00 41.15 2.27
3345 3792 1.333177 CCACCAATCGGGACCAAAAA 58.667 50.000 0.00 0.00 41.15 1.94
3346 3793 1.182385 GCCACCAATCGGGACCAAAA 61.182 55.000 0.00 0.00 41.15 2.44
3347 3794 1.605165 GCCACCAATCGGGACCAAA 60.605 57.895 0.00 0.00 41.15 3.28
3348 3795 2.034999 GCCACCAATCGGGACCAA 59.965 61.111 0.00 0.00 41.15 3.67
3349 3796 3.253061 TGCCACCAATCGGGACCA 61.253 61.111 0.00 0.00 41.15 4.02
3350 3797 2.750237 GTGCCACCAATCGGGACC 60.750 66.667 0.00 0.00 38.84 4.46
3351 3798 2.750237 GGTGCCACCAATCGGGAC 60.750 66.667 9.55 0.00 43.66 4.46
3363 3810 2.487274 TATTGGTCCCGGTTGGTGCC 62.487 60.000 0.00 0.00 34.77 5.01
3364 3811 0.609681 TTATTGGTCCCGGTTGGTGC 60.610 55.000 0.00 0.00 34.77 5.01
3365 3812 1.459450 CTTATTGGTCCCGGTTGGTG 58.541 55.000 0.00 0.00 34.77 4.17
3366 3813 0.323087 GCTTATTGGTCCCGGTTGGT 60.323 55.000 0.00 0.00 34.77 3.67
3367 3814 0.034477 AGCTTATTGGTCCCGGTTGG 60.034 55.000 0.00 0.00 0.00 3.77
3368 3815 1.743394 GAAGCTTATTGGTCCCGGTTG 59.257 52.381 0.00 0.00 0.00 3.77
3369 3816 1.340697 GGAAGCTTATTGGTCCCGGTT 60.341 52.381 0.00 0.00 0.00 4.44
3370 3817 0.255033 GGAAGCTTATTGGTCCCGGT 59.745 55.000 0.00 0.00 0.00 5.28
3371 3818 0.254747 TGGAAGCTTATTGGTCCCGG 59.745 55.000 0.00 0.00 0.00 5.73
3372 3819 1.379527 GTGGAAGCTTATTGGTCCCG 58.620 55.000 0.00 0.00 0.00 5.14
3373 3820 1.379527 CGTGGAAGCTTATTGGTCCC 58.620 55.000 0.00 0.00 0.00 4.46
3374 3821 0.733150 GCGTGGAAGCTTATTGGTCC 59.267 55.000 0.00 0.00 0.00 4.46
3375 3822 0.373716 CGCGTGGAAGCTTATTGGTC 59.626 55.000 0.00 0.00 34.40 4.02
3376 3823 0.321298 ACGCGTGGAAGCTTATTGGT 60.321 50.000 12.93 0.00 34.40 3.67
3377 3824 0.373716 GACGCGTGGAAGCTTATTGG 59.626 55.000 20.70 0.00 34.40 3.16
3378 3825 1.061131 CTGACGCGTGGAAGCTTATTG 59.939 52.381 20.70 0.00 34.40 1.90
3379 3826 1.359848 CTGACGCGTGGAAGCTTATT 58.640 50.000 20.70 0.00 34.40 1.40
3380 3827 1.084370 GCTGACGCGTGGAAGCTTAT 61.084 55.000 20.70 0.00 32.82 1.73
3381 3828 1.736645 GCTGACGCGTGGAAGCTTA 60.737 57.895 20.70 0.00 32.82 3.09
3382 3829 3.044305 GCTGACGCGTGGAAGCTT 61.044 61.111 20.70 0.00 32.82 3.74
3383 3830 4.299547 TGCTGACGCGTGGAAGCT 62.300 61.111 28.01 1.47 39.65 3.74
3384 3831 3.782244 CTGCTGACGCGTGGAAGC 61.782 66.667 20.70 22.87 39.65 3.86
3385 3832 1.891060 GAACTGCTGACGCGTGGAAG 61.891 60.000 20.70 15.97 39.65 3.46
3386 3833 1.954146 GAACTGCTGACGCGTGGAA 60.954 57.895 20.70 2.25 39.65 3.53
3387 3834 2.355837 GAACTGCTGACGCGTGGA 60.356 61.111 20.70 2.79 39.65 4.02
3388 3835 2.661537 TGAACTGCTGACGCGTGG 60.662 61.111 20.70 10.85 39.65 4.94
3389 3836 2.661566 CCTGAACTGCTGACGCGTG 61.662 63.158 20.70 3.71 39.65 5.34
3390 3837 2.356313 CCTGAACTGCTGACGCGT 60.356 61.111 13.85 13.85 39.65 6.01
3391 3838 3.114616 CCCTGAACTGCTGACGCG 61.115 66.667 3.53 3.53 39.65 6.01
3392 3839 2.743928 CCCCTGAACTGCTGACGC 60.744 66.667 0.00 0.00 0.00 5.19
3393 3840 1.888436 TAGCCCCTGAACTGCTGACG 61.888 60.000 0.00 0.00 36.57 4.35
3394 3841 0.107945 CTAGCCCCTGAACTGCTGAC 60.108 60.000 0.00 0.00 36.57 3.51
3395 3842 1.267574 CCTAGCCCCTGAACTGCTGA 61.268 60.000 0.00 0.00 36.57 4.26
3396 3843 1.222936 CCTAGCCCCTGAACTGCTG 59.777 63.158 0.00 0.00 36.57 4.41
3397 3844 1.997874 CCCTAGCCCCTGAACTGCT 60.998 63.158 0.00 0.00 39.10 4.24
3398 3845 1.853250 AACCCTAGCCCCTGAACTGC 61.853 60.000 0.00 0.00 0.00 4.40
3399 3846 0.698818 AAACCCTAGCCCCTGAACTG 59.301 55.000 0.00 0.00 0.00 3.16
3400 3847 1.456919 AAAACCCTAGCCCCTGAACT 58.543 50.000 0.00 0.00 0.00 3.01
3401 3848 1.893137 CAAAAACCCTAGCCCCTGAAC 59.107 52.381 0.00 0.00 0.00 3.18
3402 3849 1.501604 ACAAAAACCCTAGCCCCTGAA 59.498 47.619 0.00 0.00 0.00 3.02
3403 3850 1.154430 ACAAAAACCCTAGCCCCTGA 58.846 50.000 0.00 0.00 0.00 3.86
3404 3851 2.009681 AACAAAAACCCTAGCCCCTG 57.990 50.000 0.00 0.00 0.00 4.45
3405 3852 2.787339 AAACAAAAACCCTAGCCCCT 57.213 45.000 0.00 0.00 0.00 4.79
3406 3853 3.849563 AAAAACAAAAACCCTAGCCCC 57.150 42.857 0.00 0.00 0.00 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.