Multiple sequence alignment - TraesCS7D01G393400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G393400 chr7D 100.000 2393 0 0 1 2393 508792669 508795061 0.000000e+00 4420.0
1 TraesCS7D01G393400 chr7D 87.819 509 61 1 1858 2365 508691153 508691661 1.580000e-166 595.0
2 TraesCS7D01G393400 chr7D 85.861 488 57 4 1844 2319 508659428 508659915 2.120000e-140 508.0
3 TraesCS7D01G393400 chr7D 91.139 237 15 4 1588 1822 508690918 508691150 1.380000e-82 316.0
4 TraesCS7D01G393400 chr7D 82.946 258 21 7 1344 1592 508690496 508690739 6.700000e-51 211.0
5 TraesCS7D01G393400 chr7D 77.368 190 27 8 1407 1593 508814500 508814676 5.440000e-17 99.0
6 TraesCS7D01G393400 chr7A 90.960 1261 97 8 949 2198 579229300 579230554 0.000000e+00 1681.0
7 TraesCS7D01G393400 chr7A 89.557 632 57 3 119 746 579210393 579211019 0.000000e+00 793.0
8 TraesCS7D01G393400 chr7A 84.262 413 40 12 1344 1746 579144708 579145105 1.740000e-101 379.0
9 TraesCS7D01G393400 chr7A 79.854 412 56 11 1251 1653 579264363 579264756 2.340000e-70 276.0
10 TraesCS7D01G393400 chr7A 87.395 119 11 2 1344 1458 579080027 579080145 1.490000e-27 134.0
11 TraesCS7D01G393400 chr7A 93.333 45 3 0 765 809 624831665 624831709 1.540000e-07 67.6
12 TraesCS7D01G393400 chr7B 87.745 816 72 14 1344 2147 537132326 537133125 0.000000e+00 928.0
13 TraesCS7D01G393400 chr7B 87.436 589 47 15 1344 1920 536768228 536768801 0.000000e+00 652.0
14 TraesCS7D01G393400 chr7B 85.714 553 52 11 1754 2306 537140801 537141326 2.080000e-155 558.0
15 TraesCS7D01G393400 chr7B 89.391 443 45 2 1924 2366 536773536 536773976 7.470000e-155 556.0
16 TraesCS7D01G393400 chr7B 86.184 304 32 1 357 650 536988090 536988393 1.070000e-83 320.0
17 TraesCS7D01G393400 chr7B 96.970 33 1 0 1414 1446 537061435 537061467 3.320000e-04 56.5
18 TraesCS7D01G393400 chr7B 88.636 44 5 0 2049 2092 536774322 536774279 1.000000e-03 54.7
19 TraesCS7D01G393400 chr3B 80.976 205 33 5 765 966 149002562 149002763 8.860000e-35 158.0
20 TraesCS7D01G393400 chr3A 86.508 126 8 7 1 120 674741861 674741983 1.930000e-26 130.0
21 TraesCS7D01G393400 chr6A 85.217 115 12 2 12 121 279132206 279132092 1.940000e-21 113.0
22 TraesCS7D01G393400 chr6B 83.051 118 11 9 9 120 663526716 663526602 5.440000e-17 99.0
23 TraesCS7D01G393400 chr5D 91.803 61 3 2 766 824 411706408 411706348 1.520000e-12 84.2
24 TraesCS7D01G393400 chr5D 96.000 50 1 1 760 809 175301023 175301071 1.970000e-11 80.5
25 TraesCS7D01G393400 chr2A 89.231 65 4 3 765 826 216659973 216659909 7.090000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G393400 chr7D 508792669 508795061 2392 False 4420 4420 100.000000 1 2393 1 chr7D.!!$F2 2392
1 TraesCS7D01G393400 chr7D 508690496 508691661 1165 False 374 595 87.301333 1344 2365 3 chr7D.!!$F4 1021
2 TraesCS7D01G393400 chr7A 579229300 579230554 1254 False 1681 1681 90.960000 949 2198 1 chr7A.!!$F4 1249
3 TraesCS7D01G393400 chr7A 579210393 579211019 626 False 793 793 89.557000 119 746 1 chr7A.!!$F3 627
4 TraesCS7D01G393400 chr7B 537132326 537133125 799 False 928 928 87.745000 1344 2147 1 chr7B.!!$F5 803
5 TraesCS7D01G393400 chr7B 536768228 536768801 573 False 652 652 87.436000 1344 1920 1 chr7B.!!$F1 576
6 TraesCS7D01G393400 chr7B 537140801 537141326 525 False 558 558 85.714000 1754 2306 1 chr7B.!!$F6 552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
789 794 0.045002 CGCGAATACGTTTGAGAGCG 60.045 55.0 0.0 0.32 41.98 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1822 2024 0.108615 CAAGTCGCCGGATCTCTGTT 60.109 55.0 5.05 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 9.822185 ATTATGAGGAATTAAAAGAAATGCACC 57.178 29.630 0.00 0.00 0.00 5.01
64 65 6.916360 TGAGGAATTAAAAGAAATGCACCT 57.084 33.333 0.00 0.00 0.00 4.00
65 66 7.301868 TGAGGAATTAAAAGAAATGCACCTT 57.698 32.000 0.00 0.00 0.00 3.50
66 67 8.415950 TGAGGAATTAAAAGAAATGCACCTTA 57.584 30.769 0.00 0.00 0.00 2.69
67 68 8.303876 TGAGGAATTAAAAGAAATGCACCTTAC 58.696 33.333 0.00 0.00 0.00 2.34
68 69 8.422577 AGGAATTAAAAGAAATGCACCTTACT 57.577 30.769 0.00 0.00 0.00 2.24
69 70 8.306761 AGGAATTAAAAGAAATGCACCTTACTG 58.693 33.333 0.00 0.00 0.00 2.74
70 71 7.545615 GGAATTAAAAGAAATGCACCTTACTGG 59.454 37.037 0.00 0.00 42.93 4.00
71 72 7.775053 ATTAAAAGAAATGCACCTTACTGGA 57.225 32.000 0.00 0.00 39.71 3.86
72 73 7.589958 TTAAAAGAAATGCACCTTACTGGAA 57.410 32.000 0.00 0.00 39.71 3.53
73 74 6.670695 AAAAGAAATGCACCTTACTGGAAT 57.329 33.333 0.00 0.00 39.71 3.01
74 75 6.670695 AAAGAAATGCACCTTACTGGAATT 57.329 33.333 0.00 0.00 39.71 2.17
75 76 6.670695 AAGAAATGCACCTTACTGGAATTT 57.329 33.333 0.00 0.00 39.71 1.82
76 77 6.670695 AGAAATGCACCTTACTGGAATTTT 57.329 33.333 0.00 0.00 39.71 1.82
77 78 7.775053 AGAAATGCACCTTACTGGAATTTTA 57.225 32.000 0.00 0.00 39.71 1.52
78 79 8.366359 AGAAATGCACCTTACTGGAATTTTAT 57.634 30.769 0.00 0.00 39.71 1.40
79 80 8.815912 AGAAATGCACCTTACTGGAATTTTATT 58.184 29.630 0.00 0.00 39.71 1.40
82 83 9.474313 AATGCACCTTACTGGAATTTTATTAGA 57.526 29.630 0.00 0.00 39.71 2.10
83 84 8.871629 TGCACCTTACTGGAATTTTATTAGAA 57.128 30.769 0.00 0.00 39.71 2.10
84 85 9.303116 TGCACCTTACTGGAATTTTATTAGAAA 57.697 29.630 0.00 0.00 39.71 2.52
110 111 8.967664 ACAAGTACACCTTACATAAAAGAACA 57.032 30.769 0.00 0.00 0.00 3.18
111 112 9.052759 ACAAGTACACCTTACATAAAAGAACAG 57.947 33.333 0.00 0.00 0.00 3.16
112 113 9.268268 CAAGTACACCTTACATAAAAGAACAGA 57.732 33.333 0.00 0.00 0.00 3.41
113 114 9.490379 AAGTACACCTTACATAAAAGAACAGAG 57.510 33.333 0.00 0.00 0.00 3.35
114 115 8.095169 AGTACACCTTACATAAAAGAACAGAGG 58.905 37.037 0.00 0.00 0.00 3.69
115 116 6.238648 ACACCTTACATAAAAGAACAGAGGG 58.761 40.000 0.00 0.00 0.00 4.30
116 117 6.043938 ACACCTTACATAAAAGAACAGAGGGA 59.956 38.462 0.00 0.00 0.00 4.20
117 118 6.595716 CACCTTACATAAAAGAACAGAGGGAG 59.404 42.308 0.00 0.00 0.00 4.30
123 124 6.500751 ACATAAAAGAACAGAGGGAGTAGGAA 59.499 38.462 0.00 0.00 0.00 3.36
138 139 6.239232 GGGAGTAGGAAAGAAAAGGAAAAACC 60.239 42.308 0.00 0.00 39.35 3.27
139 140 6.387041 AGTAGGAAAGAAAAGGAAAAACCG 57.613 37.500 0.00 0.00 44.74 4.44
146 147 8.545420 GGAAAGAAAAGGAAAAACCGATAAAAC 58.455 33.333 0.00 0.00 44.74 2.43
147 148 9.089601 GAAAGAAAAGGAAAAACCGATAAAACA 57.910 29.630 0.00 0.00 44.74 2.83
148 149 9.438228 AAAGAAAAGGAAAAACCGATAAAACAA 57.562 25.926 0.00 0.00 44.74 2.83
149 150 9.438228 AAGAAAAGGAAAAACCGATAAAACAAA 57.562 25.926 0.00 0.00 44.74 2.83
150 151 9.093970 AGAAAAGGAAAAACCGATAAAACAAAG 57.906 29.630 0.00 0.00 44.74 2.77
151 152 9.089601 GAAAAGGAAAAACCGATAAAACAAAGA 57.910 29.630 0.00 0.00 44.74 2.52
153 154 8.642908 AAGGAAAAACCGATAAAACAAAGAAG 57.357 30.769 0.00 0.00 44.74 2.85
163 165 7.918562 CCGATAAAACAAAGAAGGAACAAAAGA 59.081 33.333 0.00 0.00 0.00 2.52
168 170 7.667043 AACAAAGAAGGAACAAAAGAAAACC 57.333 32.000 0.00 0.00 0.00 3.27
201 203 6.202516 TGATGAAAATTTAGTAAAGCCCGG 57.797 37.500 0.00 0.00 0.00 5.73
230 232 8.197439 AGAAAACGAAGAAAACCATTGAGAAAT 58.803 29.630 0.00 0.00 0.00 2.17
231 233 9.458374 GAAAACGAAGAAAACCATTGAGAAATA 57.542 29.630 0.00 0.00 0.00 1.40
233 235 9.810545 AAACGAAGAAAACCATTGAGAAATAAA 57.189 25.926 0.00 0.00 0.00 1.40
234 236 9.810545 AACGAAGAAAACCATTGAGAAATAAAA 57.189 25.926 0.00 0.00 0.00 1.52
235 237 9.810545 ACGAAGAAAACCATTGAGAAATAAAAA 57.189 25.926 0.00 0.00 0.00 1.94
301 306 2.448705 GGAAACAGCTCTCGCGCTC 61.449 63.158 5.56 0.00 42.32 5.03
302 307 1.734477 GAAACAGCTCTCGCGCTCA 60.734 57.895 5.56 0.00 42.32 4.26
307 312 2.883253 GCTCTCGCGCTCAAGGAC 60.883 66.667 5.56 0.00 0.00 3.85
317 322 2.483876 CGCTCAAGGACTGTTGAAGAA 58.516 47.619 0.00 0.00 36.01 2.52
330 335 6.122277 ACTGTTGAAGAAAAGTTGGATCTCA 58.878 36.000 0.00 0.00 0.00 3.27
345 350 7.234166 AGTTGGATCTCAAATTCCATCTTTTGT 59.766 33.333 0.00 0.00 41.52 2.83
346 351 7.161773 TGGATCTCAAATTCCATCTTTTGTC 57.838 36.000 0.00 0.00 37.10 3.18
358 363 1.304052 TTTTGTCGGGCCTGATGGG 60.304 57.895 19.55 0.00 38.36 4.00
370 375 2.352422 GATGGGCTGGTGTGCAGA 59.648 61.111 0.00 0.00 34.04 4.26
376 381 0.819259 GGCTGGTGTGCAGACTTTGA 60.819 55.000 14.32 0.00 34.04 2.69
382 387 5.181690 TGGTGTGCAGACTTTGATTTTAC 57.818 39.130 14.32 0.00 0.00 2.01
383 388 4.642437 TGGTGTGCAGACTTTGATTTTACA 59.358 37.500 14.32 0.00 0.00 2.41
387 392 6.917477 GTGTGCAGACTTTGATTTTACAATCA 59.083 34.615 6.76 0.03 45.96 2.57
450 455 0.467290 ACAGCCGAACACAACCCAAT 60.467 50.000 0.00 0.00 0.00 3.16
462 467 3.451894 CCCAATGCCCGCCTTGAC 61.452 66.667 6.31 0.00 0.00 3.18
532 537 1.277557 GACTGAGCTGACATTCCTGGT 59.722 52.381 0.00 0.00 0.00 4.00
533 538 1.701847 ACTGAGCTGACATTCCTGGTT 59.298 47.619 0.00 0.00 0.00 3.67
534 539 2.082231 CTGAGCTGACATTCCTGGTTG 58.918 52.381 0.00 0.00 0.00 3.77
604 609 3.066190 CCATGGCAGTGGCACCAG 61.066 66.667 23.12 14.37 41.84 4.00
605 610 3.755628 CATGGCAGTGGCACCAGC 61.756 66.667 23.12 20.56 41.84 4.85
643 648 1.313091 ACGAGTGACGCAGGCTATGA 61.313 55.000 0.00 0.00 46.94 2.15
648 653 0.179048 TGACGCAGGCTATGATTGGG 60.179 55.000 0.00 0.00 0.00 4.12
664 669 2.122592 GGGGTTTGGGGCAGGTTT 60.123 61.111 0.00 0.00 0.00 3.27
677 682 0.321346 CAGGTTTTGTGGGGCAATCC 59.679 55.000 0.00 0.00 36.89 3.01
682 687 0.963355 TTTGTGGGGCAATCCGCTAC 60.963 55.000 5.39 0.00 44.90 3.58
725 730 6.980051 AACGATAGGTTGGTACTTGATTTC 57.020 37.500 0.00 0.00 37.50 2.17
738 743 9.096823 TGGTACTTGATTTCTTTTCCTAGACTA 57.903 33.333 0.00 0.00 0.00 2.59
749 754 8.391075 TCTTTTCCTAGACTAAAATTGTGTGG 57.609 34.615 0.00 0.00 0.00 4.17
750 755 8.215050 TCTTTTCCTAGACTAAAATTGTGTGGA 58.785 33.333 0.00 0.00 0.00 4.02
751 756 8.934023 TTTTCCTAGACTAAAATTGTGTGGAT 57.066 30.769 0.00 0.00 0.00 3.41
752 757 7.921786 TTCCTAGACTAAAATTGTGTGGATG 57.078 36.000 0.00 0.00 0.00 3.51
753 758 6.414732 TCCTAGACTAAAATTGTGTGGATGG 58.585 40.000 0.00 0.00 0.00 3.51
754 759 5.590259 CCTAGACTAAAATTGTGTGGATGGG 59.410 44.000 0.00 0.00 0.00 4.00
755 760 3.763897 AGACTAAAATTGTGTGGATGGGC 59.236 43.478 0.00 0.00 0.00 5.36
756 761 3.505386 ACTAAAATTGTGTGGATGGGCA 58.495 40.909 0.00 0.00 0.00 5.36
757 762 3.900601 ACTAAAATTGTGTGGATGGGCAA 59.099 39.130 0.00 0.00 0.00 4.52
758 763 4.531732 ACTAAAATTGTGTGGATGGGCAAT 59.468 37.500 0.00 0.00 33.55 3.56
759 764 3.615224 AAATTGTGTGGATGGGCAATC 57.385 42.857 0.00 0.00 31.95 2.67
760 765 2.537633 ATTGTGTGGATGGGCAATCT 57.462 45.000 1.10 0.00 35.43 2.40
761 766 2.307496 TTGTGTGGATGGGCAATCTT 57.693 45.000 1.10 0.00 35.43 2.40
762 767 2.307496 TGTGTGGATGGGCAATCTTT 57.693 45.000 1.10 0.00 35.43 2.52
763 768 3.448093 TGTGTGGATGGGCAATCTTTA 57.552 42.857 1.10 0.00 35.43 1.85
764 769 3.979911 TGTGTGGATGGGCAATCTTTAT 58.020 40.909 1.10 0.00 35.43 1.40
765 770 4.352009 TGTGTGGATGGGCAATCTTTATT 58.648 39.130 1.10 0.00 35.43 1.40
766 771 4.776837 TGTGTGGATGGGCAATCTTTATTT 59.223 37.500 1.10 0.00 35.43 1.40
767 772 5.248020 TGTGTGGATGGGCAATCTTTATTTT 59.752 36.000 1.10 0.00 35.43 1.82
768 773 6.172630 GTGTGGATGGGCAATCTTTATTTTT 58.827 36.000 1.10 0.00 35.43 1.94
786 791 4.712191 TTTTTCGCGAATACGTTTGAGA 57.288 36.364 24.05 0.00 41.98 3.27
787 792 3.965209 TTTCGCGAATACGTTTGAGAG 57.035 42.857 24.05 0.00 41.98 3.20
788 793 1.265568 TCGCGAATACGTTTGAGAGC 58.734 50.000 6.20 0.00 41.98 4.09
789 794 0.045002 CGCGAATACGTTTGAGAGCG 60.045 55.000 0.00 0.32 41.98 5.03
790 795 0.989890 GCGAATACGTTTGAGAGCGT 59.010 50.000 0.00 0.00 44.95 5.07
791 796 2.179589 GCGAATACGTTTGAGAGCGTA 58.820 47.619 0.00 0.00 46.43 4.42
798 803 4.905412 ACGTTTGAGAGCGTATCTTTTC 57.095 40.909 0.00 0.00 41.05 2.29
799 804 4.304110 ACGTTTGAGAGCGTATCTTTTCA 58.696 39.130 0.00 0.00 41.05 2.69
800 805 4.929808 ACGTTTGAGAGCGTATCTTTTCAT 59.070 37.500 0.00 0.00 41.05 2.57
801 806 5.408604 ACGTTTGAGAGCGTATCTTTTCATT 59.591 36.000 0.00 0.00 41.05 2.57
802 807 5.729883 CGTTTGAGAGCGTATCTTTTCATTG 59.270 40.000 0.00 0.00 38.84 2.82
803 808 6.401047 CGTTTGAGAGCGTATCTTTTCATTGA 60.401 38.462 0.00 0.00 38.84 2.57
804 809 7.467623 GTTTGAGAGCGTATCTTTTCATTGAT 58.532 34.615 0.00 0.00 38.84 2.57
805 810 8.604035 GTTTGAGAGCGTATCTTTTCATTGATA 58.396 33.333 0.00 0.00 38.84 2.15
806 811 7.936950 TGAGAGCGTATCTTTTCATTGATAG 57.063 36.000 0.00 0.00 38.84 2.08
807 812 6.925718 TGAGAGCGTATCTTTTCATTGATAGG 59.074 38.462 0.00 0.00 38.84 2.57
808 813 7.055667 AGAGCGTATCTTTTCATTGATAGGA 57.944 36.000 0.00 0.00 32.99 2.94
809 814 7.151308 AGAGCGTATCTTTTCATTGATAGGAG 58.849 38.462 0.00 0.00 32.99 3.69
810 815 7.014711 AGAGCGTATCTTTTCATTGATAGGAGA 59.985 37.037 0.00 0.00 32.99 3.71
811 816 7.151308 AGCGTATCTTTTCATTGATAGGAGAG 58.849 38.462 0.00 0.00 34.73 3.20
812 817 6.367422 GCGTATCTTTTCATTGATAGGAGAGG 59.633 42.308 0.00 0.00 34.73 3.69
813 818 7.661968 CGTATCTTTTCATTGATAGGAGAGGA 58.338 38.462 0.00 0.00 34.73 3.71
814 819 7.812191 CGTATCTTTTCATTGATAGGAGAGGAG 59.188 40.741 0.00 0.00 34.73 3.69
815 820 7.927683 ATCTTTTCATTGATAGGAGAGGAGA 57.072 36.000 0.00 0.00 0.00 3.71
816 821 7.739995 TCTTTTCATTGATAGGAGAGGAGAA 57.260 36.000 0.00 0.00 0.00 2.87
817 822 8.150827 TCTTTTCATTGATAGGAGAGGAGAAA 57.849 34.615 0.00 0.00 0.00 2.52
818 823 8.263640 TCTTTTCATTGATAGGAGAGGAGAAAG 58.736 37.037 0.00 0.00 0.00 2.62
819 824 7.502060 TTTCATTGATAGGAGAGGAGAAAGT 57.498 36.000 0.00 0.00 0.00 2.66
820 825 8.609617 TTTCATTGATAGGAGAGGAGAAAGTA 57.390 34.615 0.00 0.00 0.00 2.24
821 826 7.589958 TCATTGATAGGAGAGGAGAAAGTAC 57.410 40.000 0.00 0.00 0.00 2.73
822 827 7.126061 TCATTGATAGGAGAGGAGAAAGTACA 58.874 38.462 0.00 0.00 0.00 2.90
823 828 7.619698 TCATTGATAGGAGAGGAGAAAGTACAA 59.380 37.037 0.00 0.00 0.00 2.41
824 829 7.411486 TTGATAGGAGAGGAGAAAGTACAAG 57.589 40.000 0.00 0.00 0.00 3.16
825 830 5.894393 TGATAGGAGAGGAGAAAGTACAAGG 59.106 44.000 0.00 0.00 0.00 3.61
826 831 4.134933 AGGAGAGGAGAAAGTACAAGGT 57.865 45.455 0.00 0.00 0.00 3.50
827 832 3.835395 AGGAGAGGAGAAAGTACAAGGTG 59.165 47.826 0.00 0.00 0.00 4.00
828 833 3.833070 GGAGAGGAGAAAGTACAAGGTGA 59.167 47.826 0.00 0.00 0.00 4.02
829 834 4.322123 GGAGAGGAGAAAGTACAAGGTGAC 60.322 50.000 0.00 0.00 0.00 3.67
830 835 4.223953 AGAGGAGAAAGTACAAGGTGACA 58.776 43.478 0.00 0.00 0.00 3.58
831 836 4.841246 AGAGGAGAAAGTACAAGGTGACAT 59.159 41.667 0.00 0.00 0.00 3.06
832 837 5.046950 AGAGGAGAAAGTACAAGGTGACATC 60.047 44.000 0.00 0.00 0.00 3.06
833 838 4.593206 AGGAGAAAGTACAAGGTGACATCA 59.407 41.667 0.00 0.00 0.00 3.07
834 839 4.691216 GGAGAAAGTACAAGGTGACATCAC 59.309 45.833 3.27 3.27 45.72 3.06
851 856 4.647654 CGGTCACGTACACAAGCT 57.352 55.556 0.00 0.00 34.81 3.74
852 857 2.141781 CGGTCACGTACACAAGCTG 58.858 57.895 0.00 0.00 34.81 4.24
853 858 1.282248 CGGTCACGTACACAAGCTGG 61.282 60.000 0.00 0.00 34.81 4.85
854 859 1.566018 GGTCACGTACACAAGCTGGC 61.566 60.000 0.00 0.00 0.00 4.85
855 860 1.663388 TCACGTACACAAGCTGGCG 60.663 57.895 0.00 0.00 0.00 5.69
856 861 1.954146 CACGTACACAAGCTGGCGT 60.954 57.895 0.00 0.00 36.46 5.68
857 862 1.227438 ACGTACACAAGCTGGCGTT 60.227 52.632 0.00 0.00 33.60 4.84
858 863 1.204062 CGTACACAAGCTGGCGTTG 59.796 57.895 0.00 0.00 0.00 4.10
859 864 1.082104 GTACACAAGCTGGCGTTGC 60.082 57.895 0.00 0.00 0.00 4.17
869 874 4.341502 GGCGTTGCCGTGTTGCAT 62.342 61.111 0.00 0.00 41.70 3.96
870 875 2.558821 GCGTTGCCGTGTTGCATA 59.441 55.556 0.00 0.00 41.70 3.14
871 876 1.081774 GCGTTGCCGTGTTGCATAA 60.082 52.632 0.00 0.00 41.70 1.90
872 877 1.065031 GCGTTGCCGTGTTGCATAAG 61.065 55.000 0.00 0.00 41.70 1.73
873 878 1.065031 CGTTGCCGTGTTGCATAAGC 61.065 55.000 0.00 0.00 41.70 3.09
874 879 1.065031 GTTGCCGTGTTGCATAAGCG 61.065 55.000 0.00 0.00 46.23 4.68
875 880 1.231296 TTGCCGTGTTGCATAAGCGA 61.231 50.000 0.00 0.00 46.23 4.93
876 881 1.060937 GCCGTGTTGCATAAGCGAG 59.939 57.895 0.00 0.00 46.23 5.03
877 882 1.060937 CCGTGTTGCATAAGCGAGC 59.939 57.895 0.00 0.00 46.23 5.03
878 883 1.634757 CCGTGTTGCATAAGCGAGCA 61.635 55.000 0.00 0.00 46.23 4.26
879 884 0.247419 CGTGTTGCATAAGCGAGCAG 60.247 55.000 0.00 0.00 46.23 4.24
880 885 1.078709 GTGTTGCATAAGCGAGCAGA 58.921 50.000 0.00 0.00 46.23 4.26
881 886 1.464608 GTGTTGCATAAGCGAGCAGAA 59.535 47.619 0.00 0.00 46.23 3.02
882 887 1.733912 TGTTGCATAAGCGAGCAGAAG 59.266 47.619 0.00 0.00 46.23 2.85
883 888 2.002586 GTTGCATAAGCGAGCAGAAGA 58.997 47.619 0.00 0.00 46.23 2.87
884 889 1.645034 TGCATAAGCGAGCAGAAGAC 58.355 50.000 0.00 0.00 46.23 3.01
885 890 1.066929 TGCATAAGCGAGCAGAAGACA 60.067 47.619 0.00 0.00 46.23 3.41
886 891 2.002586 GCATAAGCGAGCAGAAGACAA 58.997 47.619 0.00 0.00 0.00 3.18
887 892 2.030213 GCATAAGCGAGCAGAAGACAAG 59.970 50.000 0.00 0.00 0.00 3.16
888 893 2.370281 TAAGCGAGCAGAAGACAAGG 57.630 50.000 0.00 0.00 0.00 3.61
889 894 0.321122 AAGCGAGCAGAAGACAAGGG 60.321 55.000 0.00 0.00 0.00 3.95
890 895 1.743252 GCGAGCAGAAGACAAGGGG 60.743 63.158 0.00 0.00 0.00 4.79
891 896 1.078848 CGAGCAGAAGACAAGGGGG 60.079 63.158 0.00 0.00 0.00 5.40
892 897 1.831652 CGAGCAGAAGACAAGGGGGT 61.832 60.000 0.00 0.00 0.00 4.95
893 898 0.322008 GAGCAGAAGACAAGGGGGTG 60.322 60.000 0.00 0.00 0.00 4.61
894 899 1.973812 GCAGAAGACAAGGGGGTGC 60.974 63.158 0.00 0.00 0.00 5.01
895 900 1.763770 CAGAAGACAAGGGGGTGCT 59.236 57.895 0.00 0.00 0.00 4.40
896 901 0.322008 CAGAAGACAAGGGGGTGCTC 60.322 60.000 0.00 0.00 0.00 4.26
897 902 0.768221 AGAAGACAAGGGGGTGCTCA 60.768 55.000 0.00 0.00 0.00 4.26
898 903 0.322008 GAAGACAAGGGGGTGCTCAG 60.322 60.000 0.00 0.00 0.00 3.35
899 904 2.360475 GACAAGGGGGTGCTCAGC 60.360 66.667 0.00 0.00 0.00 4.26
906 911 2.037847 GGGTGCTCAGCCCCAAAT 59.962 61.111 16.30 0.00 42.92 2.32
907 912 1.306296 GGGTGCTCAGCCCCAAATA 59.694 57.895 16.30 0.00 42.92 1.40
908 913 0.753111 GGGTGCTCAGCCCCAAATAG 60.753 60.000 16.30 0.00 42.92 1.73
909 914 0.255890 GGTGCTCAGCCCCAAATAGA 59.744 55.000 0.00 0.00 0.00 1.98
910 915 1.340991 GGTGCTCAGCCCCAAATAGAA 60.341 52.381 0.00 0.00 0.00 2.10
911 916 2.446435 GTGCTCAGCCCCAAATAGAAA 58.554 47.619 0.00 0.00 0.00 2.52
912 917 2.424956 GTGCTCAGCCCCAAATAGAAAG 59.575 50.000 0.00 0.00 0.00 2.62
913 918 2.041620 TGCTCAGCCCCAAATAGAAAGT 59.958 45.455 0.00 0.00 0.00 2.66
914 919 3.092301 GCTCAGCCCCAAATAGAAAGTT 58.908 45.455 0.00 0.00 0.00 2.66
915 920 3.511540 GCTCAGCCCCAAATAGAAAGTTT 59.488 43.478 0.00 0.00 0.00 2.66
916 921 4.380973 GCTCAGCCCCAAATAGAAAGTTTC 60.381 45.833 7.57 7.57 0.00 2.78
917 922 4.735369 TCAGCCCCAAATAGAAAGTTTCA 58.265 39.130 17.65 4.52 0.00 2.69
918 923 4.766891 TCAGCCCCAAATAGAAAGTTTCAG 59.233 41.667 17.65 2.45 0.00 3.02
919 924 4.082026 CAGCCCCAAATAGAAAGTTTCAGG 60.082 45.833 17.65 10.27 0.00 3.86
920 925 3.832490 GCCCCAAATAGAAAGTTTCAGGT 59.168 43.478 17.65 0.00 0.00 4.00
921 926 4.283467 GCCCCAAATAGAAAGTTTCAGGTT 59.717 41.667 17.65 6.39 0.00 3.50
922 927 5.479027 GCCCCAAATAGAAAGTTTCAGGTTA 59.521 40.000 17.65 1.89 0.00 2.85
923 928 6.154534 GCCCCAAATAGAAAGTTTCAGGTTAT 59.845 38.462 17.65 4.14 0.00 1.89
924 929 7.340999 GCCCCAAATAGAAAGTTTCAGGTTATA 59.659 37.037 17.65 0.84 0.00 0.98
925 930 9.250246 CCCCAAATAGAAAGTTTCAGGTTATAA 57.750 33.333 17.65 0.00 0.00 0.98
936 941 9.490379 AAGTTTCAGGTTATAAGGATAATAGCG 57.510 33.333 0.00 0.00 30.25 4.26
937 942 7.603024 AGTTTCAGGTTATAAGGATAATAGCGC 59.397 37.037 0.00 0.00 30.25 5.92
938 943 6.852420 TCAGGTTATAAGGATAATAGCGCT 57.148 37.500 17.26 17.26 30.25 5.92
939 944 7.949690 TCAGGTTATAAGGATAATAGCGCTA 57.050 36.000 21.30 21.30 30.25 4.26
940 945 8.357290 TCAGGTTATAAGGATAATAGCGCTAA 57.643 34.615 22.98 6.20 30.25 3.09
941 946 8.467598 TCAGGTTATAAGGATAATAGCGCTAAG 58.532 37.037 22.98 0.00 30.25 2.18
942 947 8.251721 CAGGTTATAAGGATAATAGCGCTAAGT 58.748 37.037 22.98 14.87 30.25 2.24
943 948 8.468399 AGGTTATAAGGATAATAGCGCTAAGTC 58.532 37.037 22.98 18.02 30.25 3.01
944 949 7.705752 GGTTATAAGGATAATAGCGCTAAGTCC 59.294 40.741 26.24 26.24 30.25 3.85
945 950 8.468399 GTTATAAGGATAATAGCGCTAAGTCCT 58.532 37.037 28.69 28.69 36.22 3.85
946 951 5.810080 AAGGATAATAGCGCTAAGTCCTT 57.190 39.130 33.30 33.30 39.18 3.36
947 952 5.810080 AGGATAATAGCGCTAAGTCCTTT 57.190 39.130 28.69 18.56 30.80 3.11
958 963 0.977395 AAGTCCTTTAGCTCTGGCGT 59.023 50.000 0.00 0.00 44.37 5.68
997 1002 1.365699 GGCGTCTTCCTTTATCGCAA 58.634 50.000 9.79 0.00 46.98 4.85
1001 1006 2.936498 CGTCTTCCTTTATCGCAACCAT 59.064 45.455 0.00 0.00 0.00 3.55
1017 1022 2.458667 ACCATGAGGGAGGACAACCTG 61.459 57.143 0.00 0.00 42.20 4.00
1068 1073 6.144402 CCGTTGCTAAATTTGATATTGATGCC 59.856 38.462 0.00 0.00 0.00 4.40
1078 1083 5.276461 TGATATTGATGCCGTAGTCAAGT 57.724 39.130 0.00 0.00 0.00 3.16
1121 1126 3.585862 TGCACCGTTATGAGAGTTTCTC 58.414 45.455 0.00 0.00 43.65 2.87
1127 1132 5.105752 CCGTTATGAGAGTTTCTCCTTGAG 58.894 45.833 3.81 0.00 42.73 3.02
1146 1151 3.473147 CCTCAGAGGCACATCCAAG 57.527 57.895 2.60 0.00 37.29 3.61
1159 1164 0.467384 ATCCAAGGACATCTGGCTCG 59.533 55.000 0.00 0.00 0.00 5.03
1165 1170 1.817099 GACATCTGGCTCGGCAAGG 60.817 63.158 1.12 0.00 29.11 3.61
1219 1224 2.027653 GGCAAGTTCTCTTACTGCCTCT 60.028 50.000 4.16 0.00 38.34 3.69
1269 1274 1.178534 CCACGGCCCATCTGTTTGTT 61.179 55.000 0.00 0.00 30.14 2.83
1295 1300 1.001633 GTCGGCTAACCTCAACTCCAA 59.998 52.381 0.00 0.00 0.00 3.53
1296 1301 1.001633 TCGGCTAACCTCAACTCCAAC 59.998 52.381 0.00 0.00 0.00 3.77
1297 1302 1.270625 CGGCTAACCTCAACTCCAACA 60.271 52.381 0.00 0.00 0.00 3.33
1380 1388 4.574421 CGACTGGGCACATCAAACATATTA 59.426 41.667 0.00 0.00 0.00 0.98
1410 1418 1.144969 GAACGTCACATGAAAGCGGA 58.855 50.000 0.00 0.00 0.00 5.54
1478 1488 9.941325 TGGCACAATAAAATATGTCATTTTCTT 57.059 25.926 0.00 0.00 31.88 2.52
1540 1550 2.503356 CAGGACTGAAGCTGGATACCTT 59.497 50.000 0.00 0.00 0.00 3.50
1654 1853 4.470334 AGCAAGTTGATTCCTCTCTCTC 57.530 45.455 7.16 0.00 0.00 3.20
1656 1855 5.268387 AGCAAGTTGATTCCTCTCTCTCTA 58.732 41.667 7.16 0.00 0.00 2.43
1832 2034 2.541762 GCACTATTGCGAACAGAGATCC 59.458 50.000 0.00 0.00 39.50 3.36
1890 2092 1.113788 CCATCCAAACCGCATCCAAT 58.886 50.000 0.00 0.00 0.00 3.16
1894 2096 1.113788 CCAAACCGCATCCAATGGAT 58.886 50.000 9.36 9.36 44.21 3.41
1999 2201 0.888619 TCCGTTCAGCCACTAGACAG 59.111 55.000 0.00 0.00 0.00 3.51
2033 2235 6.929606 ACAGTCTTCAGTCAGTTAACAATACC 59.070 38.462 8.61 0.00 0.00 2.73
2084 2295 2.038295 ACATGGCAGAGATAAGCTAGCC 59.962 50.000 12.13 0.00 44.19 3.93
2089 2300 3.198872 GCAGAGATAAGCTAGCCGTTTT 58.801 45.455 12.13 1.15 0.00 2.43
2116 2327 2.996621 GCACTTCTACTTTCAGCGACAT 59.003 45.455 0.00 0.00 0.00 3.06
2119 2330 3.006967 ACTTCTACTTTCAGCGACATGGT 59.993 43.478 0.00 0.00 0.00 3.55
2125 2336 0.817229 TTCAGCGACATGGTGCAACA 60.817 50.000 7.04 7.04 45.75 3.33
2128 2339 1.137404 GCGACATGGTGCAACATCC 59.863 57.895 16.08 8.93 39.98 3.51
2236 2447 0.318784 CGTCGGGCTAGAACCATAGC 60.319 60.000 0.00 0.00 46.13 2.97
2240 2451 3.938112 GCTAGAACCATAGCGCCG 58.062 61.111 2.29 0.00 38.90 6.46
2292 2504 1.079127 GCTCCGCCGCCATATGTAT 60.079 57.895 1.24 0.00 0.00 2.29
2293 2505 0.673644 GCTCCGCCGCCATATGTATT 60.674 55.000 1.24 0.00 0.00 1.89
2302 2514 2.550978 GCCATATGTATTAGCCGCGAT 58.449 47.619 8.23 0.00 0.00 4.58
2318 2530 1.399440 GCGATGACACAATGCAGATGT 59.601 47.619 2.25 2.25 0.00 3.06
2338 2550 2.969827 GGCACGGGTTTTGGGATG 59.030 61.111 0.00 0.00 0.00 3.51
2349 2561 1.799933 TTTGGGATGGGCACAACTTT 58.200 45.000 0.00 0.00 40.26 2.66
2356 2568 0.843309 TGGGCACAACTTTCAGGAGA 59.157 50.000 0.00 0.00 0.00 3.71
2361 2573 2.555757 GCACAACTTTCAGGAGATGCTT 59.444 45.455 0.00 0.00 0.00 3.91
2365 2577 2.693069 ACTTTCAGGAGATGCTTGACG 58.307 47.619 0.00 0.00 31.65 4.35
2366 2578 2.005451 CTTTCAGGAGATGCTTGACGG 58.995 52.381 0.00 0.00 31.65 4.79
2367 2579 0.976641 TTCAGGAGATGCTTGACGGT 59.023 50.000 0.00 0.00 31.65 4.83
2368 2580 0.976641 TCAGGAGATGCTTGACGGTT 59.023 50.000 0.00 0.00 0.00 4.44
2369 2581 1.081892 CAGGAGATGCTTGACGGTTG 58.918 55.000 0.00 0.00 0.00 3.77
2370 2582 0.976641 AGGAGATGCTTGACGGTTGA 59.023 50.000 0.00 0.00 0.00 3.18
2371 2583 1.079503 GGAGATGCTTGACGGTTGAC 58.920 55.000 0.00 0.00 0.00 3.18
2382 2594 3.414700 GGTTGACGCGCACCAGAG 61.415 66.667 15.82 0.00 0.00 3.35
2383 2595 2.661866 GTTGACGCGCACCAGAGT 60.662 61.111 5.73 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 9.822185 GGTGCATTTCTTTTAATTCCTCATAAT 57.178 29.630 0.00 0.00 0.00 1.28
38 39 9.034800 AGGTGCATTTCTTTTAATTCCTCATAA 57.965 29.630 0.00 0.00 0.00 1.90
39 40 8.593945 AGGTGCATTTCTTTTAATTCCTCATA 57.406 30.769 0.00 0.00 0.00 2.15
40 41 7.486407 AGGTGCATTTCTTTTAATTCCTCAT 57.514 32.000 0.00 0.00 0.00 2.90
41 42 6.916360 AGGTGCATTTCTTTTAATTCCTCA 57.084 33.333 0.00 0.00 0.00 3.86
42 43 8.523658 AGTAAGGTGCATTTCTTTTAATTCCTC 58.476 33.333 0.00 0.00 0.00 3.71
43 44 8.306761 CAGTAAGGTGCATTTCTTTTAATTCCT 58.693 33.333 0.00 0.00 0.00 3.36
44 45 7.545615 CCAGTAAGGTGCATTTCTTTTAATTCC 59.454 37.037 0.00 0.00 0.00 3.01
45 46 8.303876 TCCAGTAAGGTGCATTTCTTTTAATTC 58.696 33.333 0.00 0.00 39.02 2.17
46 47 8.189119 TCCAGTAAGGTGCATTTCTTTTAATT 57.811 30.769 0.00 0.00 39.02 1.40
47 48 7.775053 TCCAGTAAGGTGCATTTCTTTTAAT 57.225 32.000 0.00 0.00 39.02 1.40
48 49 7.589958 TTCCAGTAAGGTGCATTTCTTTTAA 57.410 32.000 0.00 0.00 39.02 1.52
49 50 7.775053 ATTCCAGTAAGGTGCATTTCTTTTA 57.225 32.000 0.00 0.00 39.02 1.52
50 51 6.670695 ATTCCAGTAAGGTGCATTTCTTTT 57.329 33.333 0.00 0.00 39.02 2.27
51 52 6.670695 AATTCCAGTAAGGTGCATTTCTTT 57.329 33.333 0.00 0.00 39.02 2.52
52 53 6.670695 AAATTCCAGTAAGGTGCATTTCTT 57.329 33.333 0.00 0.00 39.02 2.52
53 54 6.670695 AAAATTCCAGTAAGGTGCATTTCT 57.329 33.333 0.00 0.00 39.02 2.52
56 57 9.474313 TCTAATAAAATTCCAGTAAGGTGCATT 57.526 29.630 0.00 0.00 39.02 3.56
57 58 9.474313 TTCTAATAAAATTCCAGTAAGGTGCAT 57.526 29.630 0.00 0.00 39.02 3.96
58 59 8.871629 TTCTAATAAAATTCCAGTAAGGTGCA 57.128 30.769 0.00 0.00 39.02 4.57
84 85 9.398538 TGTTCTTTTATGTAAGGTGTACTTGTT 57.601 29.630 0.00 0.00 40.37 2.83
85 86 8.967664 TGTTCTTTTATGTAAGGTGTACTTGT 57.032 30.769 0.00 0.00 40.37 3.16
86 87 9.268268 TCTGTTCTTTTATGTAAGGTGTACTTG 57.732 33.333 0.00 0.00 40.37 3.16
87 88 9.490379 CTCTGTTCTTTTATGTAAGGTGTACTT 57.510 33.333 0.00 0.00 43.28 2.24
88 89 8.095169 CCTCTGTTCTTTTATGTAAGGTGTACT 58.905 37.037 0.00 0.00 0.00 2.73
89 90 7.333672 CCCTCTGTTCTTTTATGTAAGGTGTAC 59.666 40.741 0.00 0.00 0.00 2.90
90 91 7.236019 TCCCTCTGTTCTTTTATGTAAGGTGTA 59.764 37.037 0.00 0.00 0.00 2.90
91 92 6.043938 TCCCTCTGTTCTTTTATGTAAGGTGT 59.956 38.462 0.00 0.00 0.00 4.16
92 93 6.472887 TCCCTCTGTTCTTTTATGTAAGGTG 58.527 40.000 0.00 0.00 0.00 4.00
93 94 6.272558 ACTCCCTCTGTTCTTTTATGTAAGGT 59.727 38.462 0.00 0.00 0.00 3.50
94 95 6.712276 ACTCCCTCTGTTCTTTTATGTAAGG 58.288 40.000 0.00 0.00 0.00 2.69
95 96 7.982354 CCTACTCCCTCTGTTCTTTTATGTAAG 59.018 40.741 0.00 0.00 0.00 2.34
96 97 7.676893 TCCTACTCCCTCTGTTCTTTTATGTAA 59.323 37.037 0.00 0.00 0.00 2.41
97 98 7.186972 TCCTACTCCCTCTGTTCTTTTATGTA 58.813 38.462 0.00 0.00 0.00 2.29
98 99 6.023603 TCCTACTCCCTCTGTTCTTTTATGT 58.976 40.000 0.00 0.00 0.00 2.29
99 100 6.546428 TCCTACTCCCTCTGTTCTTTTATG 57.454 41.667 0.00 0.00 0.00 1.90
100 101 7.458170 TCTTTCCTACTCCCTCTGTTCTTTTAT 59.542 37.037 0.00 0.00 0.00 1.40
101 102 6.785963 TCTTTCCTACTCCCTCTGTTCTTTTA 59.214 38.462 0.00 0.00 0.00 1.52
102 103 5.607171 TCTTTCCTACTCCCTCTGTTCTTTT 59.393 40.000 0.00 0.00 0.00 2.27
103 104 5.155905 TCTTTCCTACTCCCTCTGTTCTTT 58.844 41.667 0.00 0.00 0.00 2.52
104 105 4.753186 TCTTTCCTACTCCCTCTGTTCTT 58.247 43.478 0.00 0.00 0.00 2.52
105 106 4.405756 TCTTTCCTACTCCCTCTGTTCT 57.594 45.455 0.00 0.00 0.00 3.01
106 107 5.485209 TTTCTTTCCTACTCCCTCTGTTC 57.515 43.478 0.00 0.00 0.00 3.18
107 108 5.221945 CCTTTTCTTTCCTACTCCCTCTGTT 60.222 44.000 0.00 0.00 0.00 3.16
108 109 4.287326 CCTTTTCTTTCCTACTCCCTCTGT 59.713 45.833 0.00 0.00 0.00 3.41
109 110 4.532521 TCCTTTTCTTTCCTACTCCCTCTG 59.467 45.833 0.00 0.00 0.00 3.35
110 111 4.764491 TCCTTTTCTTTCCTACTCCCTCT 58.236 43.478 0.00 0.00 0.00 3.69
111 112 5.500546 TTCCTTTTCTTTCCTACTCCCTC 57.499 43.478 0.00 0.00 0.00 4.30
112 113 5.924769 TTTCCTTTTCTTTCCTACTCCCT 57.075 39.130 0.00 0.00 0.00 4.20
113 114 6.239232 GGTTTTTCCTTTTCTTTCCTACTCCC 60.239 42.308 0.00 0.00 0.00 4.30
114 115 6.514541 CGGTTTTTCCTTTTCTTTCCTACTCC 60.515 42.308 0.00 0.00 0.00 3.85
115 116 6.261603 TCGGTTTTTCCTTTTCTTTCCTACTC 59.738 38.462 0.00 0.00 0.00 2.59
116 117 6.124340 TCGGTTTTTCCTTTTCTTTCCTACT 58.876 36.000 0.00 0.00 0.00 2.57
117 118 6.381481 TCGGTTTTTCCTTTTCTTTCCTAC 57.619 37.500 0.00 0.00 0.00 3.18
123 124 9.438228 TTTGTTTTATCGGTTTTTCCTTTTCTT 57.562 25.926 0.00 0.00 0.00 2.52
138 139 8.850454 TCTTTTGTTCCTTCTTTGTTTTATCG 57.150 30.769 0.00 0.00 0.00 2.92
146 147 6.096695 TCGGTTTTCTTTTGTTCCTTCTTTG 58.903 36.000 0.00 0.00 0.00 2.77
147 148 6.275494 TCGGTTTTCTTTTGTTCCTTCTTT 57.725 33.333 0.00 0.00 0.00 2.52
148 149 5.907866 TCGGTTTTCTTTTGTTCCTTCTT 57.092 34.783 0.00 0.00 0.00 2.52
149 150 5.650703 TCTTCGGTTTTCTTTTGTTCCTTCT 59.349 36.000 0.00 0.00 0.00 2.85
150 151 5.886992 TCTTCGGTTTTCTTTTGTTCCTTC 58.113 37.500 0.00 0.00 0.00 3.46
151 152 5.907866 TCTTCGGTTTTCTTTTGTTCCTT 57.092 34.783 0.00 0.00 0.00 3.36
153 154 6.954616 TTTTCTTCGGTTTTCTTTTGTTCC 57.045 33.333 0.00 0.00 0.00 3.62
194 196 0.179012 TTCGTTTTCTTCCCGGGCTT 60.179 50.000 18.49 0.00 0.00 4.35
196 198 0.604511 TCTTCGTTTTCTTCCCGGGC 60.605 55.000 18.49 0.00 0.00 6.13
201 203 6.270064 TCAATGGTTTTCTTCGTTTTCTTCC 58.730 36.000 0.00 0.00 0.00 3.46
235 237 8.857098 GGTTTCTTTGGTTTTACTATTTCTCCT 58.143 33.333 0.00 0.00 0.00 3.69
236 238 8.086522 GGGTTTCTTTGGTTTTACTATTTCTCC 58.913 37.037 0.00 0.00 0.00 3.71
237 239 7.806487 CGGGTTTCTTTGGTTTTACTATTTCTC 59.194 37.037 0.00 0.00 0.00 2.87
243 245 5.435291 TCACGGGTTTCTTTGGTTTTACTA 58.565 37.500 0.00 0.00 0.00 1.82
277 279 0.737715 CGAGAGCTGTTTCCCTTCGG 60.738 60.000 0.00 0.00 0.00 4.30
301 306 5.125417 TCCAACTTTTCTTCAACAGTCCTTG 59.875 40.000 0.00 0.00 0.00 3.61
302 307 5.261216 TCCAACTTTTCTTCAACAGTCCTT 58.739 37.500 0.00 0.00 0.00 3.36
307 312 6.624352 TGAGATCCAACTTTTCTTCAACAG 57.376 37.500 0.00 0.00 0.00 3.16
330 335 2.233676 GGCCCGACAAAAGATGGAATTT 59.766 45.455 0.00 0.00 0.00 1.82
358 363 1.242076 ATCAAAGTCTGCACACCAGC 58.758 50.000 0.00 0.00 41.50 4.85
370 375 6.458210 CCTGGCTTGATTGTAAAATCAAAGT 58.542 36.000 19.32 0.00 45.36 2.66
376 381 2.166254 CGGCCTGGCTTGATTGTAAAAT 59.834 45.455 19.68 0.00 0.00 1.82
382 387 3.142838 CCCGGCCTGGCTTGATTG 61.143 66.667 19.68 1.93 35.87 2.67
429 434 0.180642 TGGGTTGTGTTCGGCTGTTA 59.819 50.000 0.00 0.00 0.00 2.41
506 511 1.954362 ATGTCAGCTCAGTCCCTCGC 61.954 60.000 0.00 0.00 0.00 5.03
520 525 0.605319 GCCGACAACCAGGAATGTCA 60.605 55.000 22.06 0.00 44.84 3.58
627 632 1.473965 CCAATCATAGCCTGCGTCACT 60.474 52.381 0.00 0.00 0.00 3.41
633 638 0.106015 AACCCCCAATCATAGCCTGC 60.106 55.000 0.00 0.00 0.00 4.85
635 640 1.062962 CCAAACCCCCAATCATAGCCT 60.063 52.381 0.00 0.00 0.00 4.58
643 648 2.122504 CTGCCCCAAACCCCCAAT 59.877 61.111 0.00 0.00 0.00 3.16
648 653 1.341913 ACAAAACCTGCCCCAAACCC 61.342 55.000 0.00 0.00 0.00 4.11
705 710 8.459635 GGAAAAGAAATCAAGTACCAACCTATC 58.540 37.037 0.00 0.00 0.00 2.08
725 730 8.391075 TCCACACAATTTTAGTCTAGGAAAAG 57.609 34.615 0.00 0.00 0.00 2.27
738 743 3.583966 AGATTGCCCATCCACACAATTTT 59.416 39.130 0.00 0.00 33.07 1.82
765 770 4.694177 CTCTCAAACGTATTCGCGAAAAA 58.306 39.130 27.23 14.43 41.18 1.94
766 771 3.422603 GCTCTCAAACGTATTCGCGAAAA 60.423 43.478 27.23 3.73 41.18 2.29
767 772 2.091588 GCTCTCAAACGTATTCGCGAAA 59.908 45.455 27.23 12.42 41.18 3.46
768 773 1.652124 GCTCTCAAACGTATTCGCGAA 59.348 47.619 25.66 25.66 41.18 4.70
769 774 1.265568 GCTCTCAAACGTATTCGCGA 58.734 50.000 3.71 3.71 41.18 5.87
770 775 0.045002 CGCTCTCAAACGTATTCGCG 60.045 55.000 0.00 0.00 41.18 5.87
771 776 0.989890 ACGCTCTCAAACGTATTCGC 59.010 50.000 0.00 0.00 41.48 4.70
777 782 4.304110 TGAAAAGATACGCTCTCAAACGT 58.696 39.130 0.00 0.00 45.85 3.99
778 783 4.903638 TGAAAAGATACGCTCTCAAACG 57.096 40.909 0.00 0.00 31.03 3.60
779 784 6.831769 TCAATGAAAAGATACGCTCTCAAAC 58.168 36.000 0.00 0.00 31.03 2.93
780 785 7.615582 ATCAATGAAAAGATACGCTCTCAAA 57.384 32.000 0.00 0.00 31.03 2.69
781 786 7.439356 CCTATCAATGAAAAGATACGCTCTCAA 59.561 37.037 0.00 0.00 31.03 3.02
782 787 6.925718 CCTATCAATGAAAAGATACGCTCTCA 59.074 38.462 0.00 0.00 31.03 3.27
783 788 7.148641 TCCTATCAATGAAAAGATACGCTCTC 58.851 38.462 0.00 0.00 31.03 3.20
784 789 7.014711 TCTCCTATCAATGAAAAGATACGCTCT 59.985 37.037 0.00 0.00 34.96 4.09
785 790 7.148641 TCTCCTATCAATGAAAAGATACGCTC 58.851 38.462 0.00 0.00 0.00 5.03
786 791 7.055667 TCTCCTATCAATGAAAAGATACGCT 57.944 36.000 0.00 0.00 0.00 5.07
787 792 6.367422 CCTCTCCTATCAATGAAAAGATACGC 59.633 42.308 0.00 0.00 0.00 4.42
788 793 7.661968 TCCTCTCCTATCAATGAAAAGATACG 58.338 38.462 0.00 0.00 0.00 3.06
789 794 8.865090 TCTCCTCTCCTATCAATGAAAAGATAC 58.135 37.037 0.00 0.00 0.00 2.24
790 795 9.439461 TTCTCCTCTCCTATCAATGAAAAGATA 57.561 33.333 0.00 0.00 0.00 1.98
791 796 7.927683 TCTCCTCTCCTATCAATGAAAAGAT 57.072 36.000 0.00 0.00 0.00 2.40
792 797 7.739995 TTCTCCTCTCCTATCAATGAAAAGA 57.260 36.000 0.00 0.00 0.00 2.52
793 798 8.046107 ACTTTCTCCTCTCCTATCAATGAAAAG 58.954 37.037 0.00 0.00 0.00 2.27
794 799 7.922382 ACTTTCTCCTCTCCTATCAATGAAAA 58.078 34.615 0.00 0.00 0.00 2.29
795 800 7.502060 ACTTTCTCCTCTCCTATCAATGAAA 57.498 36.000 0.00 0.00 0.00 2.69
796 801 7.619698 TGTACTTTCTCCTCTCCTATCAATGAA 59.380 37.037 0.00 0.00 0.00 2.57
797 802 7.126061 TGTACTTTCTCCTCTCCTATCAATGA 58.874 38.462 0.00 0.00 0.00 2.57
798 803 7.353414 TGTACTTTCTCCTCTCCTATCAATG 57.647 40.000 0.00 0.00 0.00 2.82
799 804 7.070571 CCTTGTACTTTCTCCTCTCCTATCAAT 59.929 40.741 0.00 0.00 0.00 2.57
800 805 6.381420 CCTTGTACTTTCTCCTCTCCTATCAA 59.619 42.308 0.00 0.00 0.00 2.57
801 806 5.894393 CCTTGTACTTTCTCCTCTCCTATCA 59.106 44.000 0.00 0.00 0.00 2.15
802 807 5.894964 ACCTTGTACTTTCTCCTCTCCTATC 59.105 44.000 0.00 0.00 0.00 2.08
803 808 5.659079 CACCTTGTACTTTCTCCTCTCCTAT 59.341 44.000 0.00 0.00 0.00 2.57
804 809 5.017490 CACCTTGTACTTTCTCCTCTCCTA 58.983 45.833 0.00 0.00 0.00 2.94
805 810 3.835395 CACCTTGTACTTTCTCCTCTCCT 59.165 47.826 0.00 0.00 0.00 3.69
806 811 3.833070 TCACCTTGTACTTTCTCCTCTCC 59.167 47.826 0.00 0.00 0.00 3.71
807 812 4.281182 TGTCACCTTGTACTTTCTCCTCTC 59.719 45.833 0.00 0.00 0.00 3.20
808 813 4.223953 TGTCACCTTGTACTTTCTCCTCT 58.776 43.478 0.00 0.00 0.00 3.69
809 814 4.602340 TGTCACCTTGTACTTTCTCCTC 57.398 45.455 0.00 0.00 0.00 3.71
810 815 4.593206 TGATGTCACCTTGTACTTTCTCCT 59.407 41.667 0.00 0.00 0.00 3.69
811 816 4.691216 GTGATGTCACCTTGTACTTTCTCC 59.309 45.833 1.68 0.00 40.85 3.71
812 817 4.386049 CGTGATGTCACCTTGTACTTTCTC 59.614 45.833 7.51 0.00 43.66 2.87
813 818 4.307432 CGTGATGTCACCTTGTACTTTCT 58.693 43.478 7.51 0.00 43.66 2.52
814 819 3.432252 CCGTGATGTCACCTTGTACTTTC 59.568 47.826 7.51 0.00 43.66 2.62
815 820 3.181458 ACCGTGATGTCACCTTGTACTTT 60.181 43.478 7.51 0.00 43.66 2.66
816 821 2.367567 ACCGTGATGTCACCTTGTACTT 59.632 45.455 7.51 0.00 43.66 2.24
817 822 1.968493 ACCGTGATGTCACCTTGTACT 59.032 47.619 7.51 0.00 43.66 2.73
818 823 2.288579 TGACCGTGATGTCACCTTGTAC 60.289 50.000 7.51 0.00 43.66 2.90
819 824 1.964933 TGACCGTGATGTCACCTTGTA 59.035 47.619 7.51 0.00 43.66 2.41
820 825 0.756294 TGACCGTGATGTCACCTTGT 59.244 50.000 7.51 3.05 43.66 3.16
821 826 3.605013 TGACCGTGATGTCACCTTG 57.395 52.632 7.51 0.08 43.66 3.61
834 839 1.282248 CCAGCTTGTGTACGTGACCG 61.282 60.000 0.00 0.00 40.83 4.79
835 840 1.566018 GCCAGCTTGTGTACGTGACC 61.566 60.000 0.00 0.00 0.00 4.02
836 841 1.860078 GCCAGCTTGTGTACGTGAC 59.140 57.895 0.00 0.00 0.00 3.67
837 842 1.663388 CGCCAGCTTGTGTACGTGA 60.663 57.895 0.00 0.00 0.00 4.35
838 843 1.495584 AACGCCAGCTTGTGTACGTG 61.496 55.000 4.19 0.00 37.19 4.49
839 844 1.227438 AACGCCAGCTTGTGTACGT 60.227 52.632 4.19 0.00 38.35 3.57
840 845 1.204062 CAACGCCAGCTTGTGTACG 59.796 57.895 4.19 0.00 0.00 3.67
841 846 1.082104 GCAACGCCAGCTTGTGTAC 60.082 57.895 4.19 0.00 0.00 2.90
842 847 3.339731 GCAACGCCAGCTTGTGTA 58.660 55.556 4.19 0.00 0.00 2.90
858 863 1.060937 CTCGCTTATGCAACACGGC 59.939 57.895 0.00 0.00 39.64 5.68
859 864 1.060937 GCTCGCTTATGCAACACGG 59.939 57.895 0.00 0.00 39.64 4.94
860 865 0.247419 CTGCTCGCTTATGCAACACG 60.247 55.000 0.00 0.00 38.81 4.49
861 866 1.078709 TCTGCTCGCTTATGCAACAC 58.921 50.000 0.00 0.00 38.81 3.32
862 867 1.733912 CTTCTGCTCGCTTATGCAACA 59.266 47.619 0.00 0.00 38.81 3.33
863 868 2.002586 TCTTCTGCTCGCTTATGCAAC 58.997 47.619 0.00 0.00 38.81 4.17
864 869 2.002586 GTCTTCTGCTCGCTTATGCAA 58.997 47.619 0.00 0.00 38.81 4.08
865 870 1.066929 TGTCTTCTGCTCGCTTATGCA 60.067 47.619 1.16 0.00 39.64 3.96
866 871 1.645034 TGTCTTCTGCTCGCTTATGC 58.355 50.000 0.00 0.00 0.00 3.14
867 872 2.606725 CCTTGTCTTCTGCTCGCTTATG 59.393 50.000 0.00 0.00 0.00 1.90
868 873 2.419297 CCCTTGTCTTCTGCTCGCTTAT 60.419 50.000 0.00 0.00 0.00 1.73
869 874 1.066858 CCCTTGTCTTCTGCTCGCTTA 60.067 52.381 0.00 0.00 0.00 3.09
870 875 0.321122 CCCTTGTCTTCTGCTCGCTT 60.321 55.000 0.00 0.00 0.00 4.68
871 876 1.294780 CCCTTGTCTTCTGCTCGCT 59.705 57.895 0.00 0.00 0.00 4.93
872 877 1.743252 CCCCTTGTCTTCTGCTCGC 60.743 63.158 0.00 0.00 0.00 5.03
873 878 1.078848 CCCCCTTGTCTTCTGCTCG 60.079 63.158 0.00 0.00 0.00 5.03
874 879 0.322008 CACCCCCTTGTCTTCTGCTC 60.322 60.000 0.00 0.00 0.00 4.26
875 880 1.763770 CACCCCCTTGTCTTCTGCT 59.236 57.895 0.00 0.00 0.00 4.24
876 881 1.973812 GCACCCCCTTGTCTTCTGC 60.974 63.158 0.00 0.00 0.00 4.26
877 882 0.322008 GAGCACCCCCTTGTCTTCTG 60.322 60.000 0.00 0.00 0.00 3.02
878 883 0.768221 TGAGCACCCCCTTGTCTTCT 60.768 55.000 0.00 0.00 0.00 2.85
879 884 0.322008 CTGAGCACCCCCTTGTCTTC 60.322 60.000 0.00 0.00 0.00 2.87
880 885 1.763770 CTGAGCACCCCCTTGTCTT 59.236 57.895 0.00 0.00 0.00 3.01
881 886 2.900106 GCTGAGCACCCCCTTGTCT 61.900 63.158 0.00 0.00 0.00 3.41
882 887 2.360475 GCTGAGCACCCCCTTGTC 60.360 66.667 0.00 0.00 0.00 3.18
883 888 3.971702 GGCTGAGCACCCCCTTGT 61.972 66.667 6.82 0.00 0.00 3.16
884 889 4.748144 GGGCTGAGCACCCCCTTG 62.748 72.222 6.82 0.00 42.01 3.61
891 896 2.128771 TTCTATTTGGGGCTGAGCAC 57.871 50.000 6.82 0.74 0.00 4.40
892 897 2.041620 ACTTTCTATTTGGGGCTGAGCA 59.958 45.455 6.82 0.00 0.00 4.26
893 898 2.728007 ACTTTCTATTTGGGGCTGAGC 58.272 47.619 0.00 0.00 0.00 4.26
894 899 4.766891 TGAAACTTTCTATTTGGGGCTGAG 59.233 41.667 3.22 0.00 0.00 3.35
895 900 4.735369 TGAAACTTTCTATTTGGGGCTGA 58.265 39.130 3.22 0.00 0.00 4.26
896 901 4.082026 CCTGAAACTTTCTATTTGGGGCTG 60.082 45.833 3.22 0.00 0.00 4.85
897 902 4.089361 CCTGAAACTTTCTATTTGGGGCT 58.911 43.478 3.22 0.00 0.00 5.19
898 903 3.832490 ACCTGAAACTTTCTATTTGGGGC 59.168 43.478 3.22 0.00 0.00 5.80
899 904 7.718334 ATAACCTGAAACTTTCTATTTGGGG 57.282 36.000 3.22 0.00 0.00 4.96
910 915 9.490379 CGCTATTATCCTTATAACCTGAAACTT 57.510 33.333 0.00 0.00 30.42 2.66
911 916 7.603024 GCGCTATTATCCTTATAACCTGAAACT 59.397 37.037 0.00 0.00 30.42 2.66
912 917 7.603024 AGCGCTATTATCCTTATAACCTGAAAC 59.397 37.037 8.99 0.00 30.42 2.78
913 918 7.676947 AGCGCTATTATCCTTATAACCTGAAA 58.323 34.615 8.99 0.00 30.42 2.69
914 919 7.241042 AGCGCTATTATCCTTATAACCTGAA 57.759 36.000 8.99 0.00 30.42 3.02
915 920 6.852420 AGCGCTATTATCCTTATAACCTGA 57.148 37.500 8.99 0.00 30.42 3.86
916 921 8.251721 ACTTAGCGCTATTATCCTTATAACCTG 58.748 37.037 19.60 0.00 30.42 4.00
917 922 8.363761 ACTTAGCGCTATTATCCTTATAACCT 57.636 34.615 19.60 0.00 30.42 3.50
918 923 7.705752 GGACTTAGCGCTATTATCCTTATAACC 59.294 40.741 24.47 9.05 30.42 2.85
919 924 8.468399 AGGACTTAGCGCTATTATCCTTATAAC 58.532 37.037 26.99 10.13 30.83 1.89
920 925 8.591114 AGGACTTAGCGCTATTATCCTTATAA 57.409 34.615 26.99 9.09 30.83 0.98
921 926 8.591114 AAGGACTTAGCGCTATTATCCTTATA 57.409 34.615 34.11 14.09 42.03 0.98
922 927 7.483580 AAGGACTTAGCGCTATTATCCTTAT 57.516 36.000 34.11 22.49 42.03 1.73
923 928 6.912951 AAGGACTTAGCGCTATTATCCTTA 57.087 37.500 34.11 15.25 42.03 2.69
924 929 5.810080 AAGGACTTAGCGCTATTATCCTT 57.190 39.130 31.94 31.94 39.67 3.36
925 930 5.810080 AAAGGACTTAGCGCTATTATCCT 57.190 39.130 26.99 26.99 36.66 3.24
937 942 2.166664 ACGCCAGAGCTAAAGGACTTAG 59.833 50.000 2.92 0.00 40.17 2.18
938 943 2.176889 ACGCCAGAGCTAAAGGACTTA 58.823 47.619 2.92 0.00 36.60 2.24
939 944 0.977395 ACGCCAGAGCTAAAGGACTT 59.023 50.000 2.92 0.00 36.60 3.01
940 945 1.751924 CTACGCCAGAGCTAAAGGACT 59.248 52.381 2.92 0.00 36.60 3.85
941 946 1.202428 CCTACGCCAGAGCTAAAGGAC 60.202 57.143 2.92 0.00 33.77 3.85
942 947 1.112113 CCTACGCCAGAGCTAAAGGA 58.888 55.000 2.92 0.00 33.77 3.36
943 948 0.530870 GCCTACGCCAGAGCTAAAGG 60.531 60.000 0.00 0.00 36.60 3.11
944 949 2.979130 GCCTACGCCAGAGCTAAAG 58.021 57.895 0.00 0.00 36.60 1.85
972 977 2.234913 TAAAGGAAGACGCCCGCTCC 62.235 60.000 0.00 0.00 0.00 4.70
997 1002 0.178861 AGGTTGTCCTCCCTCATGGT 60.179 55.000 0.00 0.00 40.58 3.55
1001 1006 1.640917 GTACAGGTTGTCCTCCCTCA 58.359 55.000 0.00 0.00 43.07 3.86
1017 1022 1.143401 GCAGCCCGGAGTAAGGTAC 59.857 63.158 0.73 0.00 0.00 3.34
1146 1151 1.817099 CTTGCCGAGCCAGATGTCC 60.817 63.158 0.00 0.00 0.00 4.02
1165 1170 2.102553 GACTAGCGACAGCGGTCC 59.897 66.667 11.54 4.54 46.64 4.46
1171 1176 1.330521 GAGCTGAGAGACTAGCGACAG 59.669 57.143 0.00 0.00 44.43 3.51
1269 1274 0.607217 TGAGGTTAGCCGACGAGTCA 60.607 55.000 0.00 0.00 40.50 3.41
1295 1300 9.474920 CCATTGTGATAACTGTTACATTTTTGT 57.525 29.630 1.73 0.00 0.00 2.83
1296 1301 9.474920 ACCATTGTGATAACTGTTACATTTTTG 57.525 29.630 1.73 0.00 0.00 2.44
1297 1302 9.474920 CACCATTGTGATAACTGTTACATTTTT 57.525 29.630 1.73 0.00 45.76 1.94
1327 1332 6.769822 ACCTTGAATCTATGGCTTCTACATTG 59.230 38.462 0.00 0.00 0.00 2.82
1329 1334 6.506538 ACCTTGAATCTATGGCTTCTACAT 57.493 37.500 0.00 0.00 0.00 2.29
1330 1335 5.957771 ACCTTGAATCTATGGCTTCTACA 57.042 39.130 0.00 0.00 0.00 2.74
1392 1400 1.148310 CTCCGCTTTCATGTGACGTT 58.852 50.000 0.00 0.00 0.00 3.99
1403 1411 5.599999 ACTGATATGTTACTCTCCGCTTT 57.400 39.130 0.00 0.00 0.00 3.51
1404 1412 5.105310 ACAACTGATATGTTACTCTCCGCTT 60.105 40.000 0.00 0.00 0.00 4.68
1410 1418 8.824756 TTAGAGGACAACTGATATGTTACTCT 57.175 34.615 14.69 14.69 42.65 3.24
1492 1502 5.881923 ATAGTCCGGTAGATTGCCTAAAA 57.118 39.130 0.00 0.00 0.00 1.52
1507 1517 5.241949 AGCTTCAGTCCTGTTATATAGTCCG 59.758 44.000 0.00 0.00 0.00 4.79
1540 1550 5.652014 CACTTGTTGGGCCTATAAATTGAGA 59.348 40.000 4.53 0.00 0.00 3.27
1654 1853 3.577848 AGGCATTAGCATGAGAGACCTAG 59.422 47.826 0.00 0.00 44.61 3.02
1656 1855 2.406559 AGGCATTAGCATGAGAGACCT 58.593 47.619 0.00 0.00 44.61 3.85
1822 2024 0.108615 CAAGTCGCCGGATCTCTGTT 60.109 55.000 5.05 0.00 0.00 3.16
1890 2092 3.772387 TGCTTTGGGTCATTGTTATCCA 58.228 40.909 0.00 0.00 0.00 3.41
1894 2096 5.221422 CCTCTTTTGCTTTGGGTCATTGTTA 60.221 40.000 0.00 0.00 0.00 2.41
1999 2201 4.119862 TGACTGAAGACTGTTGCTTGTAC 58.880 43.478 0.00 0.00 0.00 2.90
2089 2300 3.003689 GCTGAAAGTAGAAGTGCTGCAAA 59.996 43.478 2.77 0.00 35.30 3.68
2116 2327 2.184020 CTCCCGAGGATGTTGCACCA 62.184 60.000 0.00 0.00 0.00 4.17
2282 2494 2.004583 TCGCGGCTAATACATATGGC 57.995 50.000 6.13 0.00 0.00 4.40
2288 2500 1.135333 TGTGTCATCGCGGCTAATACA 59.865 47.619 6.13 2.46 0.00 2.29
2292 2504 1.006086 CATTGTGTCATCGCGGCTAA 58.994 50.000 6.13 0.00 0.00 3.09
2293 2505 1.428370 GCATTGTGTCATCGCGGCTA 61.428 55.000 6.13 0.00 0.00 3.93
2302 2514 0.518195 CGCACATCTGCATTGTGTCA 59.482 50.000 23.26 0.00 44.96 3.58
2325 2537 2.283532 TGCCCATCCCAAAACCCG 60.284 61.111 0.00 0.00 0.00 5.28
2326 2538 1.124477 TTGTGCCCATCCCAAAACCC 61.124 55.000 0.00 0.00 0.00 4.11
2328 2540 1.047801 AGTTGTGCCCATCCCAAAAC 58.952 50.000 0.00 0.00 31.92 2.43
2337 2549 0.843309 TCTCCTGAAAGTTGTGCCCA 59.157 50.000 0.00 0.00 0.00 5.36
2338 2550 1.815003 CATCTCCTGAAAGTTGTGCCC 59.185 52.381 0.00 0.00 0.00 5.36
2349 2561 0.976641 AACCGTCAAGCATCTCCTGA 59.023 50.000 0.00 0.00 0.00 3.86
2356 2568 2.667318 CGCGTCAACCGTCAAGCAT 61.667 57.895 0.00 0.00 39.32 3.79
2365 2577 3.414700 CTCTGGTGCGCGTCAACC 61.415 66.667 17.43 17.43 0.00 3.77
2366 2578 2.661866 ACTCTGGTGCGCGTCAAC 60.662 61.111 8.43 9.96 0.00 3.18
2367 2579 2.636778 TTCACTCTGGTGCGCGTCAA 62.637 55.000 8.43 0.00 42.72 3.18
2368 2580 2.434658 ATTCACTCTGGTGCGCGTCA 62.435 55.000 8.43 3.08 42.72 4.35
2369 2581 1.291877 AATTCACTCTGGTGCGCGTC 61.292 55.000 8.43 0.00 42.72 5.19
2370 2582 1.301716 AATTCACTCTGGTGCGCGT 60.302 52.632 8.43 0.00 42.72 6.01
2371 2583 1.133253 CAATTCACTCTGGTGCGCG 59.867 57.895 0.00 0.00 42.72 6.86
2372 2584 1.154150 GCAATTCACTCTGGTGCGC 60.154 57.895 0.00 0.00 42.72 6.09
2373 2585 0.592637 TTGCAATTCACTCTGGTGCG 59.407 50.000 0.00 0.00 42.72 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.