Multiple sequence alignment - TraesCS7D01G392500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G392500 chr7D 100.000 4806 0 0 1 4806 507419283 507424088 0.000000e+00 8876
1 TraesCS7D01G392500 chr7B 92.764 4837 224 48 19 4806 535821579 535826338 0.000000e+00 6878
2 TraesCS7D01G392500 chr7A 94.111 3481 151 19 1352 4806 577223375 577226827 0.000000e+00 5243
3 TraesCS7D01G392500 chr7A 92.683 697 20 13 619 1300 577222675 577223355 0.000000e+00 976
4 TraesCS7D01G392500 chr7A 91.379 522 30 9 1586 2093 93143659 93144179 0.000000e+00 701
5 TraesCS7D01G392500 chr7A 90.751 519 33 9 1588 2093 373293185 373292669 0.000000e+00 678
6 TraesCS7D01G392500 chr7A 90.805 348 25 5 1199 1544 93143314 93143656 4.380000e-125 459
7 TraesCS7D01G392500 chr7A 90.141 355 25 6 1199 1552 373293528 373293183 2.040000e-123 453
8 TraesCS7D01G392500 chr7A 89.368 348 30 5 1199 1544 94035662 94036004 9.560000e-117 431
9 TraesCS7D01G392500 chr7A 85.507 345 34 10 31 360 577222021 577222364 3.560000e-91 346
10 TraesCS7D01G392500 chr7A 100.000 61 0 0 2033 2093 94036296 94036356 3.930000e-21 113
11 TraesCS7D01G392500 chr4A 90.962 520 33 8 1587 2093 535417223 535417741 0.000000e+00 688
12 TraesCS7D01G392500 chr4A 89.045 356 29 9 1199 1552 535416878 535417225 2.660000e-117 433
13 TraesCS7D01G392500 chr2A 90.787 521 34 8 1586 2093 736867100 736866581 0.000000e+00 684
14 TraesCS7D01G392500 chr1A 90.403 521 35 9 1586 2093 465397066 465396548 0.000000e+00 671
15 TraesCS7D01G392500 chr1A 89.827 521 36 10 1586 2093 5950451 5950967 0.000000e+00 652
16 TraesCS7D01G392500 chr1A 91.092 348 24 5 1199 1544 5950106 5950448 9.420000e-127 464
17 TraesCS7D01G392500 chr1A 90.625 352 26 5 1198 1547 465397412 465397066 1.220000e-125 460
18 TraesCS7D01G392500 chr3A 91.954 348 21 5 1199 1544 681734634 681734976 9.350000e-132 481
19 TraesCS7D01G392500 chr3A 86.054 294 27 7 1586 1866 681734979 681735271 2.170000e-78 303
20 TraesCS7D01G392500 chr6D 80.982 163 29 2 1111 1272 365275686 365275847 1.400000e-25 128
21 TraesCS7D01G392500 chr6A 80.982 163 29 2 1111 1272 506232464 506232625 1.400000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G392500 chr7D 507419283 507424088 4805 False 8876.000000 8876 100.0000 1 4806 1 chr7D.!!$F1 4805
1 TraesCS7D01G392500 chr7B 535821579 535826338 4759 False 6878.000000 6878 92.7640 19 4806 1 chr7B.!!$F1 4787
2 TraesCS7D01G392500 chr7A 577222021 577226827 4806 False 2188.333333 5243 90.7670 31 4806 3 chr7A.!!$F3 4775
3 TraesCS7D01G392500 chr7A 93143314 93144179 865 False 580.000000 701 91.0920 1199 2093 2 chr7A.!!$F1 894
4 TraesCS7D01G392500 chr7A 373292669 373293528 859 True 565.500000 678 90.4460 1199 2093 2 chr7A.!!$R1 894
5 TraesCS7D01G392500 chr7A 94035662 94036356 694 False 272.000000 431 94.6840 1199 2093 2 chr7A.!!$F2 894
6 TraesCS7D01G392500 chr4A 535416878 535417741 863 False 560.500000 688 90.0035 1199 2093 2 chr4A.!!$F1 894
7 TraesCS7D01G392500 chr2A 736866581 736867100 519 True 684.000000 684 90.7870 1586 2093 1 chr2A.!!$R1 507
8 TraesCS7D01G392500 chr1A 465396548 465397412 864 True 565.500000 671 90.5140 1198 2093 2 chr1A.!!$R1 895
9 TraesCS7D01G392500 chr1A 5950106 5950967 861 False 558.000000 652 90.4595 1199 2093 2 chr1A.!!$F1 894
10 TraesCS7D01G392500 chr3A 681734634 681735271 637 False 392.000000 481 89.0040 1199 1866 2 chr3A.!!$F1 667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
155 166 0.033504 GTGTGGAGCTTTCGTCAGGA 59.966 55.0 0.00 0.00 0.00 3.86 F
387 463 0.109342 ATGGTGATCGGATTCCCAGC 59.891 55.0 13.00 7.70 0.00 4.85 F
546 625 0.179056 ACACCCAAGGACTTGTGTCG 60.179 55.0 10.81 4.17 43.79 4.35 F
1546 1714 0.400815 TGGGGCGGTAACAGGGATAT 60.401 55.0 0.00 0.00 0.00 1.63 F
1573 1741 0.107017 CTCTGGCACGGGGATTGATT 60.107 55.0 0.00 0.00 37.40 2.57 F
3472 3705 0.036294 GTGGTCCCAGAACAGTAGGC 60.036 60.0 0.00 0.00 26.03 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1554 1722 0.107017 AATCAATCCCCGTGCCAGAG 60.107 55.000 0.00 0.0 0.00 3.35 R
1555 1723 0.394216 CAATCAATCCCCGTGCCAGA 60.394 55.000 0.00 0.0 0.00 3.86 R
1556 1724 0.394216 TCAATCAATCCCCGTGCCAG 60.394 55.000 0.00 0.0 0.00 4.85 R
3277 3510 0.889994 TGATGGCCTGCAATGACAAC 59.110 50.000 3.32 0.0 0.00 3.32 R
3568 3801 3.666001 CGCATTTGCAGCATTTTGATTC 58.334 40.909 0.00 0.0 42.21 2.52 R
4298 4539 1.095600 GATGCCCGAACTCCTTTTCC 58.904 55.000 0.00 0.0 0.00 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.801620 GGAGAGGTGGGGAAACGA 58.198 61.111 0.00 0.00 0.00 3.85
18 19 2.297937 GGAGAGGTGGGGAAACGAT 58.702 57.895 0.00 0.00 0.00 3.73
19 20 1.492764 GGAGAGGTGGGGAAACGATA 58.507 55.000 0.00 0.00 0.00 2.92
20 21 1.413077 GGAGAGGTGGGGAAACGATAG 59.587 57.143 0.00 0.00 46.19 2.08
56 57 1.351017 TGGAGTTTGGGTTGCTCTAGG 59.649 52.381 0.00 0.00 0.00 3.02
66 67 2.488952 GTTGCTCTAGGAATGGCTAGC 58.511 52.381 6.04 6.04 0.00 3.42
67 68 2.094100 TGCTCTAGGAATGGCTAGCT 57.906 50.000 15.72 0.00 0.00 3.32
68 69 2.402564 TGCTCTAGGAATGGCTAGCTT 58.597 47.619 15.72 1.04 0.00 3.74
81 82 3.197116 TGGCTAGCTTTAGTAGGGTTCAC 59.803 47.826 15.72 0.00 0.00 3.18
100 106 2.094494 CACTCTAGCGTCTCATTGGTGT 60.094 50.000 0.00 0.00 0.00 4.16
130 136 2.153366 CCAAAGGTGTGATTGGCAAC 57.847 50.000 0.00 0.00 39.64 4.17
148 159 2.946762 GGTGCGTGTGGAGCTTTC 59.053 61.111 0.00 0.00 35.28 2.62
155 166 0.033504 GTGTGGAGCTTTCGTCAGGA 59.966 55.000 0.00 0.00 0.00 3.86
166 177 4.822026 CTTTCGTCAGGACTAAATGGTCT 58.178 43.478 0.41 0.00 36.55 3.85
167 178 4.884668 TTCGTCAGGACTAAATGGTCTT 57.115 40.909 0.00 0.00 36.55 3.01
168 179 5.988310 TTCGTCAGGACTAAATGGTCTTA 57.012 39.130 0.00 0.00 36.55 2.10
204 215 2.438411 AGTCTAGGTGGTCTTCGACAG 58.562 52.381 0.00 0.00 33.68 3.51
216 227 2.490509 TCTTCGACAGCATCCTTTCGTA 59.509 45.455 0.00 0.00 40.97 3.43
227 238 4.972440 GCATCCTTTCGTATTTTGCTCATC 59.028 41.667 0.00 0.00 0.00 2.92
298 309 2.235016 AGCTAGTGAGATTAGGCCTCG 58.765 52.381 9.68 0.00 33.51 4.63
387 463 0.109342 ATGGTGATCGGATTCCCAGC 59.891 55.000 13.00 7.70 0.00 4.85
391 467 1.666234 GATCGGATTCCCAGCTCGC 60.666 63.158 0.00 0.00 0.00 5.03
399 475 1.826340 TTCCCAGCTCGCTGTTGCTA 61.826 55.000 16.82 0.00 42.15 3.49
408 484 0.723981 CGCTGTTGCTAGCTTCTTCC 59.276 55.000 17.23 0.00 41.51 3.46
421 497 4.143986 GCTTCTTCCAGCTATAACAGGT 57.856 45.455 0.00 0.00 36.79 4.00
428 504 2.565841 CAGCTATAACAGGTGGCTTCC 58.434 52.381 0.00 0.00 46.89 3.46
455 531 2.823984 CTGGCTTAGAGAGTGATGCAG 58.176 52.381 0.00 0.00 0.00 4.41
461 540 0.325484 AGAGAGTGATGCAGAGGCCT 60.325 55.000 3.86 3.86 40.13 5.19
519 598 1.446272 GAGTGCGGGAGAAAGACGG 60.446 63.158 0.00 0.00 0.00 4.79
546 625 0.179056 ACACCCAAGGACTTGTGTCG 60.179 55.000 10.81 4.17 43.79 4.35
551 631 2.224209 CCCAAGGACTTGTGTCGTTACT 60.224 50.000 10.81 0.00 45.80 2.24
586 666 0.820871 GTGTTGCAGGGGTTTGACAA 59.179 50.000 0.00 0.00 0.00 3.18
616 696 2.409870 GCATTGGCCTTGTCCTCCG 61.410 63.158 3.32 0.00 0.00 4.63
645 775 1.227263 CGTATTGCGGGTGGAGAGG 60.227 63.158 0.00 0.00 36.85 3.69
675 805 2.820178 GGGAGTCCCATCCACAAAAAT 58.180 47.619 24.35 0.00 44.65 1.82
718 849 1.743252 CCTTGTCCGCTTGCTCTCC 60.743 63.158 0.00 0.00 0.00 3.71
790 926 1.307430 GGCTTCTCCCTTCCCCTCT 60.307 63.158 0.00 0.00 0.00 3.69
799 939 1.598856 CCTTCCCCTCTCCTCTCCCT 61.599 65.000 0.00 0.00 0.00 4.20
1291 1450 1.070758 TGAGCACGCTTCTTCTTCCTT 59.929 47.619 0.00 0.00 0.00 3.36
1292 1451 2.299013 TGAGCACGCTTCTTCTTCCTTA 59.701 45.455 0.00 0.00 0.00 2.69
1348 1515 2.464403 GGGGATCATGGGGAGGGTG 61.464 68.421 0.00 0.00 0.00 4.61
1366 1533 1.129437 GTGTGATTTTCGAGCTGGAGC 59.871 52.381 0.00 0.00 42.49 4.70
1403 1570 0.404040 GGTGGTTTGTGGGGATCAGA 59.596 55.000 0.00 0.00 0.00 3.27
1544 1712 1.502527 TTTGGGGCGGTAACAGGGAT 61.503 55.000 0.00 0.00 0.00 3.85
1546 1714 0.400815 TGGGGCGGTAACAGGGATAT 60.401 55.000 0.00 0.00 0.00 1.63
1547 1715 1.132785 TGGGGCGGTAACAGGGATATA 60.133 52.381 0.00 0.00 0.00 0.86
1548 1716 1.980036 GGGGCGGTAACAGGGATATAA 59.020 52.381 0.00 0.00 0.00 0.98
1549 1717 2.574824 GGGGCGGTAACAGGGATATAAT 59.425 50.000 0.00 0.00 0.00 1.28
1550 1718 3.009805 GGGGCGGTAACAGGGATATAATT 59.990 47.826 0.00 0.00 0.00 1.40
1551 1719 4.507869 GGGGCGGTAACAGGGATATAATTT 60.508 45.833 0.00 0.00 0.00 1.82
1552 1720 4.457949 GGGCGGTAACAGGGATATAATTTG 59.542 45.833 0.00 0.00 0.00 2.32
1553 1721 5.310451 GGCGGTAACAGGGATATAATTTGA 58.690 41.667 0.00 0.00 0.00 2.69
1554 1722 5.180680 GGCGGTAACAGGGATATAATTTGAC 59.819 44.000 0.00 0.00 0.00 3.18
1555 1723 5.995897 GCGGTAACAGGGATATAATTTGACT 59.004 40.000 0.00 0.00 0.00 3.41
1556 1724 6.147328 GCGGTAACAGGGATATAATTTGACTC 59.853 42.308 0.00 0.00 0.00 3.36
1557 1725 7.442656 CGGTAACAGGGATATAATTTGACTCT 58.557 38.462 0.00 0.00 0.00 3.24
1558 1726 7.385205 CGGTAACAGGGATATAATTTGACTCTG 59.615 40.741 0.00 0.00 35.50 3.35
1559 1727 7.661847 GGTAACAGGGATATAATTTGACTCTGG 59.338 40.741 0.00 0.00 33.92 3.86
1560 1728 5.625150 ACAGGGATATAATTTGACTCTGGC 58.375 41.667 0.00 0.00 33.92 4.85
1561 1729 5.132648 ACAGGGATATAATTTGACTCTGGCA 59.867 40.000 0.00 0.00 33.92 4.92
1562 1730 5.471456 CAGGGATATAATTTGACTCTGGCAC 59.529 44.000 0.00 0.00 0.00 5.01
1563 1731 4.452455 GGGATATAATTTGACTCTGGCACG 59.548 45.833 0.00 0.00 0.00 5.34
1564 1732 4.452455 GGATATAATTTGACTCTGGCACGG 59.548 45.833 0.00 0.00 0.00 4.94
1565 1733 2.107950 TAATTTGACTCTGGCACGGG 57.892 50.000 0.00 0.00 33.92 5.28
1566 1734 0.609131 AATTTGACTCTGGCACGGGG 60.609 55.000 0.00 0.00 44.03 5.73
1567 1735 1.488705 ATTTGACTCTGGCACGGGGA 61.489 55.000 0.00 0.00 37.40 4.81
1568 1736 1.488705 TTTGACTCTGGCACGGGGAT 61.489 55.000 0.00 0.00 37.40 3.85
1569 1737 1.488705 TTGACTCTGGCACGGGGATT 61.489 55.000 0.00 0.00 37.40 3.01
1570 1738 1.450312 GACTCTGGCACGGGGATTG 60.450 63.158 0.00 0.00 37.40 2.67
1571 1739 1.899437 GACTCTGGCACGGGGATTGA 61.899 60.000 0.00 0.00 37.40 2.57
1572 1740 1.274703 ACTCTGGCACGGGGATTGAT 61.275 55.000 0.00 0.00 37.40 2.57
1573 1741 0.107017 CTCTGGCACGGGGATTGATT 60.107 55.000 0.00 0.00 37.40 2.57
1574 1742 0.394216 TCTGGCACGGGGATTGATTG 60.394 55.000 0.00 0.00 33.92 2.67
1575 1743 0.394216 CTGGCACGGGGATTGATTGA 60.394 55.000 0.00 0.00 0.00 2.57
1576 1744 0.679640 TGGCACGGGGATTGATTGAC 60.680 55.000 0.00 0.00 0.00 3.18
1577 1745 0.679640 GGCACGGGGATTGATTGACA 60.680 55.000 0.00 0.00 0.00 3.58
1578 1746 1.173043 GCACGGGGATTGATTGACAA 58.827 50.000 0.00 0.00 42.95 3.18
1579 1747 1.133025 GCACGGGGATTGATTGACAAG 59.867 52.381 0.00 0.00 42.02 3.16
1580 1748 1.133025 CACGGGGATTGATTGACAAGC 59.867 52.381 0.00 0.00 43.19 4.01
1581 1749 1.004745 ACGGGGATTGATTGACAAGCT 59.995 47.619 4.88 0.00 43.40 3.74
1582 1750 2.094675 CGGGGATTGATTGACAAGCTT 58.905 47.619 4.88 0.00 43.40 3.74
1583 1751 2.493278 CGGGGATTGATTGACAAGCTTT 59.507 45.455 4.88 0.00 43.40 3.51
1584 1752 3.674138 CGGGGATTGATTGACAAGCTTTG 60.674 47.826 4.88 0.00 43.40 2.77
1608 1815 0.117140 TCATGAGACCTGGGGTGTCT 59.883 55.000 13.59 2.03 44.90 3.41
1609 1816 0.251354 CATGAGACCTGGGGTGTCTG 59.749 60.000 13.59 7.01 44.90 3.51
1610 1817 0.178891 ATGAGACCTGGGGTGTCTGT 60.179 55.000 13.59 2.17 44.90 3.41
1611 1818 1.121407 TGAGACCTGGGGTGTCTGTG 61.121 60.000 13.59 0.00 44.90 3.66
1612 1819 1.074471 AGACCTGGGGTGTCTGTGT 60.074 57.895 0.00 0.00 41.40 3.72
1614 1821 1.053424 GACCTGGGGTGTCTGTGTTA 58.947 55.000 0.00 0.00 35.25 2.41
1615 1822 1.418637 GACCTGGGGTGTCTGTGTTAA 59.581 52.381 0.00 0.00 35.25 2.01
1618 1825 1.880027 CTGGGGTGTCTGTGTTAAAGC 59.120 52.381 0.00 0.00 0.00 3.51
1620 1827 2.158534 TGGGGTGTCTGTGTTAAAGCAT 60.159 45.455 0.00 0.00 0.00 3.79
1621 1828 3.073209 TGGGGTGTCTGTGTTAAAGCATA 59.927 43.478 0.00 0.00 0.00 3.14
1658 1867 6.785466 TGGGAAGTTTTTAGGCCTCTAAATTT 59.215 34.615 9.68 13.87 42.84 1.82
1742 1952 6.673839 ATTTCGTTTTGGGGAAGGAAATTA 57.326 33.333 10.66 0.00 44.88 1.40
1743 1953 6.673839 TTTCGTTTTGGGGAAGGAAATTAT 57.326 33.333 2.49 0.00 38.04 1.28
1744 1954 6.673839 TTCGTTTTGGGGAAGGAAATTATT 57.326 33.333 0.00 0.00 32.39 1.40
1750 1960 6.367374 TTGGGGAAGGAAATTATTGGAAAC 57.633 37.500 0.00 0.00 0.00 2.78
1751 1961 4.780554 TGGGGAAGGAAATTATTGGAAACC 59.219 41.667 0.00 0.00 0.00 3.27
1974 2195 7.424227 ACAATTATTTGAACTGCCAAATGTG 57.576 32.000 14.80 12.53 43.99 3.21
2110 2334 3.010138 AGTCTTACTTTTGGGCATGCCTA 59.990 43.478 34.70 28.21 36.10 3.93
2203 2427 0.548031 ATGTGTAGTCCCATGCCCAG 59.452 55.000 0.00 0.00 0.00 4.45
2217 2441 1.230324 GCCCAGTTCTTCAGTGTCAC 58.770 55.000 0.00 0.00 0.00 3.67
2230 2454 3.118408 TCAGTGTCACAAGGCTAAACTGT 60.118 43.478 5.62 0.00 36.00 3.55
2240 2464 6.640907 CACAAGGCTAAACTGTAAAAATGGTC 59.359 38.462 0.00 0.00 0.00 4.02
2245 2469 6.071616 GGCTAAACTGTAAAAATGGTCATGGA 60.072 38.462 0.00 0.00 0.00 3.41
2252 2476 6.068010 TGTAAAAATGGTCATGGACTCAACT 58.932 36.000 0.00 0.00 32.47 3.16
2320 2544 5.708948 CTTGAGAGCTACTAGTCATATGCC 58.291 45.833 0.00 0.00 0.00 4.40
2329 2553 6.367422 GCTACTAGTCATATGCCAGATGTTTC 59.633 42.308 0.00 0.00 0.00 2.78
2413 2637 3.007614 TGAGTTGGTGGGTAGTAGAAAGC 59.992 47.826 0.00 0.00 0.00 3.51
2456 2680 3.366052 TGGATAAGGAACTCTTTGCCC 57.634 47.619 0.00 0.00 38.49 5.36
2484 2708 8.506437 CAAGTCAGACATCTTTTGCATAGTTTA 58.494 33.333 2.66 0.00 0.00 2.01
2525 2749 5.958955 TGTTCATGATCACAAACACAAACA 58.041 33.333 16.75 8.14 0.00 2.83
2526 2750 5.804473 TGTTCATGATCACAAACACAAACAC 59.196 36.000 16.75 0.00 0.00 3.32
2527 2751 5.573337 TCATGATCACAAACACAAACACA 57.427 34.783 0.00 0.00 0.00 3.72
2528 2752 5.958955 TCATGATCACAAACACAAACACAA 58.041 33.333 0.00 0.00 0.00 3.33
2529 2753 6.393171 TCATGATCACAAACACAAACACAAA 58.607 32.000 0.00 0.00 0.00 2.83
2530 2754 6.309980 TCATGATCACAAACACAAACACAAAC 59.690 34.615 0.00 0.00 0.00 2.93
2531 2755 5.532557 TGATCACAAACACAAACACAAACA 58.467 33.333 0.00 0.00 0.00 2.83
2532 2756 5.403766 TGATCACAAACACAAACACAAACAC 59.596 36.000 0.00 0.00 0.00 3.32
2533 2757 4.682787 TCACAAACACAAACACAAACACA 58.317 34.783 0.00 0.00 0.00 3.72
2534 2758 5.109210 TCACAAACACAAACACAAACACAA 58.891 33.333 0.00 0.00 0.00 3.33
2535 2759 5.580691 TCACAAACACAAACACAAACACAAA 59.419 32.000 0.00 0.00 0.00 2.83
2536 2760 5.674580 CACAAACACAAACACAAACACAAAC 59.325 36.000 0.00 0.00 0.00 2.93
2550 2774 6.074782 ACAAACACAAACACAAACAGTTTACG 60.075 34.615 0.00 0.00 37.10 3.18
2556 2780 4.162096 ACACAAACAGTTTACGCAAACA 57.838 36.364 13.52 0.00 45.44 2.83
2576 2800 7.587629 CAAACACAAGATCTTTGCTTCTGATA 58.412 34.615 4.86 0.00 0.00 2.15
2588 2813 5.808042 TGCTTCTGATAGAATGCACTTTC 57.192 39.130 0.00 0.00 35.24 2.62
2599 2824 5.809001 AGAATGCACTTTCACAATAGGAGA 58.191 37.500 3.04 0.00 0.00 3.71
2688 2913 5.468409 GGAAGATCAAAATAGGCAGACTAGC 59.532 44.000 0.00 0.00 34.56 3.42
2739 2972 3.519107 TGTTGAGATATTGCTCCTGGTCA 59.481 43.478 0.00 0.00 33.95 4.02
2743 2976 4.409901 TGAGATATTGCTCCTGGTCAATGA 59.590 41.667 19.52 9.61 34.95 2.57
2755 2988 5.705441 TCCTGGTCAATGAACACTCATAAAC 59.295 40.000 0.00 0.00 41.66 2.01
2762 2995 6.917477 TCAATGAACACTCATAAACTGTTTGC 59.083 34.615 15.69 0.00 41.66 3.68
2763 2996 5.826601 TGAACACTCATAAACTGTTTGCA 57.173 34.783 15.69 0.00 0.00 4.08
2820 3053 0.178068 TATCTTTGGCAGGACCGAGC 59.822 55.000 3.62 3.62 43.94 5.03
3118 3351 3.119743 GCAAAGATCATGCACAGCTAACA 60.120 43.478 16.09 0.00 43.29 2.41
3121 3354 4.895224 AGATCATGCACAGCTAACAATG 57.105 40.909 0.00 0.00 0.00 2.82
3188 3421 6.352516 AGTCTGGAATTCTATGCTTTACAGG 58.647 40.000 5.23 0.00 0.00 4.00
3213 3446 5.612725 TGCCAGTCTATATGATGTTGTCA 57.387 39.130 0.00 0.00 42.06 3.58
3277 3510 5.804473 TGCAGCAAATAATAATCCGTTGTTG 59.196 36.000 0.00 0.00 34.64 3.33
3472 3705 0.036294 GTGGTCCCAGAACAGTAGGC 60.036 60.000 0.00 0.00 26.03 3.93
3568 3801 1.409427 GGTCACCTTCTCCCACTATCG 59.591 57.143 0.00 0.00 0.00 2.92
3631 3864 5.529060 GCAACAATATCCTCCAGGTAAGAAG 59.471 44.000 0.00 0.00 36.34 2.85
3781 4017 2.158971 GCAACAGTTCCCACCAAACAAT 60.159 45.455 0.00 0.00 0.00 2.71
3900 4136 1.162698 CTGTTGTGACATCCAGCCTG 58.837 55.000 0.71 0.00 34.72 4.85
4086 4323 3.575687 GCTGCCTGGGCTGAATTATATTT 59.424 43.478 20.01 0.00 41.63 1.40
4158 4395 2.939460 AATGTGAATGTTAAGCCGCC 57.061 45.000 0.00 0.00 0.00 6.13
4160 4397 0.037590 TGTGAATGTTAAGCCGCCCT 59.962 50.000 0.00 0.00 0.00 5.19
4298 4539 2.046285 GGGACCAAACTGGATGCCG 61.046 63.158 0.00 0.00 40.96 5.69
4313 4554 2.038837 GCCGGAAAAGGAGTTCGGG 61.039 63.158 5.05 7.06 45.92 5.14
4335 4576 4.058817 GCATCCAACCTGTGTATAGTAGC 58.941 47.826 0.00 0.00 0.00 3.58
4386 4628 1.459592 AGTTCAATTCTTTCGGTCGCG 59.540 47.619 0.00 0.00 0.00 5.87
4445 4687 3.932089 TCGTATCATGTGTGAATGTGGTG 59.068 43.478 0.00 0.00 38.01 4.17
4473 4715 4.835615 AGGTCTTTCAGTGTCATAGTGTCT 59.164 41.667 0.00 0.00 0.00 3.41
4736 4984 0.322997 TATCACCCAGTTTTGGCCCG 60.323 55.000 0.00 0.00 43.58 6.13
4767 5015 6.208204 GCATCCAGGTGAATTATCTGCTTTAT 59.792 38.462 0.00 0.00 36.13 1.40
4769 5017 9.288576 CATCCAGGTGAATTATCTGCTTTATTA 57.711 33.333 0.00 0.00 36.13 0.98
4770 5018 9.866655 ATCCAGGTGAATTATCTGCTTTATTAA 57.133 29.630 0.00 0.00 36.13 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.007635 CAAACTATCGTTTCCCCACCTC 58.992 50.000 0.00 0.00 41.23 3.85
4 5 2.374170 ACAAACTATCGTTTCCCCACCT 59.626 45.455 0.00 0.00 41.23 4.00
5 6 2.486592 CACAAACTATCGTTTCCCCACC 59.513 50.000 0.00 0.00 41.23 4.61
6 7 2.486592 CCACAAACTATCGTTTCCCCAC 59.513 50.000 0.00 0.00 41.23 4.61
7 8 2.372504 TCCACAAACTATCGTTTCCCCA 59.627 45.455 0.00 0.00 41.23 4.96
8 9 3.062122 TCCACAAACTATCGTTTCCCC 57.938 47.619 0.00 0.00 41.23 4.81
9 10 4.142469 CCAATCCACAAACTATCGTTTCCC 60.142 45.833 0.00 0.00 41.23 3.97
10 11 4.457949 ACCAATCCACAAACTATCGTTTCC 59.542 41.667 0.00 0.00 41.23 3.13
11 12 5.180492 TGACCAATCCACAAACTATCGTTTC 59.820 40.000 0.00 0.00 41.23 2.78
12 13 5.067273 TGACCAATCCACAAACTATCGTTT 58.933 37.500 0.00 0.00 43.85 3.60
13 14 4.647611 TGACCAATCCACAAACTATCGTT 58.352 39.130 0.00 0.00 34.03 3.85
14 15 4.280436 TGACCAATCCACAAACTATCGT 57.720 40.909 0.00 0.00 0.00 3.73
15 16 4.035558 CCATGACCAATCCACAAACTATCG 59.964 45.833 0.00 0.00 0.00 2.92
16 17 5.192927 TCCATGACCAATCCACAAACTATC 58.807 41.667 0.00 0.00 0.00 2.08
17 18 5.191727 TCCATGACCAATCCACAAACTAT 57.808 39.130 0.00 0.00 0.00 2.12
18 19 4.042809 ACTCCATGACCAATCCACAAACTA 59.957 41.667 0.00 0.00 0.00 2.24
19 20 3.181429 ACTCCATGACCAATCCACAAACT 60.181 43.478 0.00 0.00 0.00 2.66
20 21 3.157087 ACTCCATGACCAATCCACAAAC 58.843 45.455 0.00 0.00 0.00 2.93
33 34 1.425066 AGAGCAACCCAAACTCCATGA 59.575 47.619 0.00 0.00 0.00 3.07
56 57 4.691326 ACCCTACTAAAGCTAGCCATTC 57.309 45.455 12.13 0.00 0.00 2.67
66 67 4.398673 ACGCTAGAGTGAACCCTACTAAAG 59.601 45.833 0.00 0.00 0.00 1.85
67 68 4.338879 ACGCTAGAGTGAACCCTACTAAA 58.661 43.478 0.00 0.00 0.00 1.85
68 69 3.944015 GACGCTAGAGTGAACCCTACTAA 59.056 47.826 2.99 0.00 0.00 2.24
81 82 2.926200 CAACACCAATGAGACGCTAGAG 59.074 50.000 0.00 0.00 0.00 2.43
100 106 2.597217 CCTTTGGCGCCTCACCAA 60.597 61.111 29.70 10.44 45.37 3.67
129 135 3.750373 AAAGCTCCACACGCACCGT 62.750 57.895 0.00 0.00 42.36 4.83
130 136 2.954753 GAAAGCTCCACACGCACCG 61.955 63.158 0.00 0.00 0.00 4.94
148 159 6.150396 AGATAAGACCATTTAGTCCTGACG 57.850 41.667 0.00 0.00 37.49 4.35
155 166 8.529476 ACGTAGACAAAGATAAGACCATTTAGT 58.471 33.333 0.00 0.00 0.00 2.24
166 177 9.236006 ACCTAGACTAAACGTAGACAAAGATAA 57.764 33.333 0.00 0.00 0.00 1.75
167 178 8.671921 CACCTAGACTAAACGTAGACAAAGATA 58.328 37.037 0.00 0.00 0.00 1.98
168 179 7.362747 CCACCTAGACTAAACGTAGACAAAGAT 60.363 40.741 0.00 0.00 0.00 2.40
204 215 4.355543 TGAGCAAAATACGAAAGGATGC 57.644 40.909 0.00 0.00 32.52 3.91
216 227 4.342359 AGAAGAAGGCAGATGAGCAAAAT 58.658 39.130 0.00 0.00 35.83 1.82
227 238 2.333014 GTCGAACAGAGAAGAAGGCAG 58.667 52.381 0.00 0.00 0.00 4.85
387 463 1.658095 GAAGAAGCTAGCAACAGCGAG 59.342 52.381 18.83 0.00 46.52 5.03
391 467 1.736681 GCTGGAAGAAGCTAGCAACAG 59.263 52.381 18.83 14.99 41.44 3.16
408 484 2.171448 AGGAAGCCACCTGTTATAGCTG 59.829 50.000 0.00 0.00 39.01 4.24
461 540 1.195115 AAGCTCGATGCCACCTCTTA 58.805 50.000 0.00 0.00 44.23 2.10
507 586 2.280823 ATCGACGCCGTCTTTCTCCC 62.281 60.000 16.07 0.00 37.05 4.30
519 598 0.804933 GTCCTTGGGTGTATCGACGC 60.805 60.000 0.00 0.00 35.18 5.19
546 625 9.620660 CAACACCATCCTTATAAAAACAGTAAC 57.379 33.333 0.00 0.00 0.00 2.50
551 631 6.295011 CCTGCAACACCATCCTTATAAAAACA 60.295 38.462 0.00 0.00 0.00 2.83
586 666 5.180271 CAAGGCCAATGCTACAATTCAAAT 58.820 37.500 5.01 0.00 37.74 2.32
595 675 1.383523 GAGGACAAGGCCAATGCTAC 58.616 55.000 5.01 0.00 37.74 3.58
616 696 1.326548 CCGCAATACGTTTGCCTACTC 59.673 52.381 21.51 3.25 42.10 2.59
645 775 3.202706 GGACTCCCGGCGAAATGC 61.203 66.667 9.30 0.00 45.38 3.56
790 926 3.024356 AGCGGGAGAGGGAGAGGA 61.024 66.667 0.00 0.00 0.00 3.71
949 1096 2.124060 CCTAGCTGAGCTGAGCGGA 61.124 63.158 19.78 10.85 44.24 5.54
950 1097 2.416678 CCTAGCTGAGCTGAGCGG 59.583 66.667 19.78 15.59 44.24 5.52
951 1098 1.954362 AACCCTAGCTGAGCTGAGCG 61.954 60.000 19.78 7.87 44.24 5.03
1291 1450 6.538742 CACAACAGGAAAGAAGAAACAGAGTA 59.461 38.462 0.00 0.00 0.00 2.59
1292 1451 5.355350 CACAACAGGAAAGAAGAAACAGAGT 59.645 40.000 0.00 0.00 0.00 3.24
1386 1553 0.698238 CCTCTGATCCCCACAAACCA 59.302 55.000 0.00 0.00 0.00 3.67
1403 1570 0.409484 CCCAATTGAACCCCAGACCT 59.591 55.000 7.12 0.00 0.00 3.85
1438 1606 4.814294 AGCCGATCACCGCCGTTC 62.814 66.667 0.00 0.00 36.84 3.95
1521 1689 1.586154 CTGTTACCGCCCCAAAGCAG 61.586 60.000 0.00 0.00 0.00 4.24
1544 1712 3.433031 CCCCGTGCCAGAGTCAAATTATA 60.433 47.826 0.00 0.00 0.00 0.98
1546 1714 1.339631 CCCCGTGCCAGAGTCAAATTA 60.340 52.381 0.00 0.00 0.00 1.40
1547 1715 0.609131 CCCCGTGCCAGAGTCAAATT 60.609 55.000 0.00 0.00 0.00 1.82
1548 1716 1.002134 CCCCGTGCCAGAGTCAAAT 60.002 57.895 0.00 0.00 0.00 2.32
1549 1717 1.488705 ATCCCCGTGCCAGAGTCAAA 61.489 55.000 0.00 0.00 0.00 2.69
1550 1718 1.488705 AATCCCCGTGCCAGAGTCAA 61.489 55.000 0.00 0.00 0.00 3.18
1551 1719 1.918293 AATCCCCGTGCCAGAGTCA 60.918 57.895 0.00 0.00 0.00 3.41
1552 1720 1.450312 CAATCCCCGTGCCAGAGTC 60.450 63.158 0.00 0.00 0.00 3.36
1553 1721 1.274703 ATCAATCCCCGTGCCAGAGT 61.275 55.000 0.00 0.00 0.00 3.24
1554 1722 0.107017 AATCAATCCCCGTGCCAGAG 60.107 55.000 0.00 0.00 0.00 3.35
1555 1723 0.394216 CAATCAATCCCCGTGCCAGA 60.394 55.000 0.00 0.00 0.00 3.86
1556 1724 0.394216 TCAATCAATCCCCGTGCCAG 60.394 55.000 0.00 0.00 0.00 4.85
1557 1725 0.679640 GTCAATCAATCCCCGTGCCA 60.680 55.000 0.00 0.00 0.00 4.92
1558 1726 0.679640 TGTCAATCAATCCCCGTGCC 60.680 55.000 0.00 0.00 0.00 5.01
1559 1727 1.133025 CTTGTCAATCAATCCCCGTGC 59.867 52.381 0.00 0.00 35.35 5.34
1560 1728 1.133025 GCTTGTCAATCAATCCCCGTG 59.867 52.381 0.00 0.00 35.35 4.94
1561 1729 1.004745 AGCTTGTCAATCAATCCCCGT 59.995 47.619 0.00 0.00 35.35 5.28
1562 1730 1.755179 AGCTTGTCAATCAATCCCCG 58.245 50.000 0.00 0.00 35.35 5.73
1563 1731 3.259123 ACAAAGCTTGTCAATCAATCCCC 59.741 43.478 0.00 0.00 40.56 4.81
1564 1732 4.525912 ACAAAGCTTGTCAATCAATCCC 57.474 40.909 0.00 0.00 40.56 3.85
1565 1733 6.849588 AAAACAAAGCTTGTCAATCAATCC 57.150 33.333 0.00 0.00 44.59 3.01
1566 1734 7.908230 TGAAAAACAAAGCTTGTCAATCAATC 58.092 30.769 0.00 0.00 44.59 2.67
1567 1735 7.846644 TGAAAAACAAAGCTTGTCAATCAAT 57.153 28.000 0.00 0.00 44.59 2.57
1568 1736 7.548427 TCATGAAAAACAAAGCTTGTCAATCAA 59.452 29.630 0.00 0.00 44.59 2.57
1569 1737 7.040494 TCATGAAAAACAAAGCTTGTCAATCA 58.960 30.769 0.00 1.59 44.59 2.57
1570 1738 7.436080 TCTCATGAAAAACAAAGCTTGTCAATC 59.564 33.333 0.00 0.00 44.59 2.67
1571 1739 7.223387 GTCTCATGAAAAACAAAGCTTGTCAAT 59.777 33.333 0.00 0.00 44.59 2.57
1572 1740 6.531240 GTCTCATGAAAAACAAAGCTTGTCAA 59.469 34.615 0.00 0.00 44.59 3.18
1573 1741 6.035843 GTCTCATGAAAAACAAAGCTTGTCA 58.964 36.000 0.00 0.00 44.59 3.58
1574 1742 5.460091 GGTCTCATGAAAAACAAAGCTTGTC 59.540 40.000 0.00 0.00 44.59 3.18
1576 1744 5.461078 CAGGTCTCATGAAAAACAAAGCTTG 59.539 40.000 0.00 0.00 0.00 4.01
1577 1745 5.452356 CCAGGTCTCATGAAAAACAAAGCTT 60.452 40.000 0.00 0.00 0.00 3.74
1578 1746 4.038402 CCAGGTCTCATGAAAAACAAAGCT 59.962 41.667 0.00 0.00 0.00 3.74
1579 1747 4.301628 CCAGGTCTCATGAAAAACAAAGC 58.698 43.478 0.00 0.00 0.00 3.51
1580 1748 4.262164 CCCCAGGTCTCATGAAAAACAAAG 60.262 45.833 0.00 0.00 0.00 2.77
1581 1749 3.640967 CCCCAGGTCTCATGAAAAACAAA 59.359 43.478 0.00 0.00 0.00 2.83
1582 1750 3.230134 CCCCAGGTCTCATGAAAAACAA 58.770 45.455 0.00 0.00 0.00 2.83
1583 1751 2.176798 ACCCCAGGTCTCATGAAAAACA 59.823 45.455 0.00 0.00 0.00 2.83
1584 1752 2.558359 CACCCCAGGTCTCATGAAAAAC 59.442 50.000 0.00 0.00 31.02 2.43
1618 1825 5.841957 ACTTCCCAAGCAGCTAAAATATG 57.158 39.130 0.00 0.00 0.00 1.78
1620 1827 6.664428 AAAACTTCCCAAGCAGCTAAAATA 57.336 33.333 0.00 0.00 0.00 1.40
1621 1828 5.551305 AAAACTTCCCAAGCAGCTAAAAT 57.449 34.783 0.00 0.00 0.00 1.82
1673 1882 4.460382 AGTTCCGCAATTCATGATGAAACT 59.540 37.500 12.36 6.30 40.12 2.66
1742 1952 6.423776 AACATCATGAAACAGGTTTCCAAT 57.576 33.333 19.11 7.06 46.15 3.16
1743 1953 5.867903 AACATCATGAAACAGGTTTCCAA 57.132 34.783 19.11 5.19 46.15 3.53
1744 1954 6.968263 TTAACATCATGAAACAGGTTTCCA 57.032 33.333 19.11 9.88 46.15 3.53
1750 1960 9.044150 ACACAAAATTTAACATCATGAAACAGG 57.956 29.630 0.00 0.00 0.00 4.00
1751 1961 9.852481 CACACAAAATTTAACATCATGAAACAG 57.148 29.630 0.00 0.00 0.00 3.16
1956 2177 4.405116 ACACACATTTGGCAGTTCAAAT 57.595 36.364 0.00 0.00 45.11 2.32
1974 2195 2.287248 GCTGCAGGAAAGAACTCAACAC 60.287 50.000 17.12 0.00 0.00 3.32
2110 2334 3.118665 ACAAGGCAGCAGTTGAAACAAAT 60.119 39.130 12.56 0.00 0.00 2.32
2203 2427 2.565841 AGCCTTGTGACACTGAAGAAC 58.434 47.619 7.20 0.00 0.00 3.01
2217 2441 6.744112 TGACCATTTTTACAGTTTAGCCTTG 58.256 36.000 0.00 0.00 0.00 3.61
2230 2454 8.106462 TCATAGTTGAGTCCATGACCATTTTTA 58.894 33.333 0.00 0.00 32.18 1.52
2240 2464 8.517878 ACATTTCTTTTCATAGTTGAGTCCATG 58.482 33.333 0.00 0.00 32.27 3.66
2245 2469 8.682936 ACTCACATTTCTTTTCATAGTTGAGT 57.317 30.769 0.00 0.00 32.27 3.41
2320 2544 5.049198 TGCACTAAAGCTTCAGAAACATCTG 60.049 40.000 2.82 0.00 35.87 2.90
2329 2553 6.486253 TCAAGTAATGCACTAAAGCTTCAG 57.514 37.500 0.00 0.00 36.04 3.02
2413 2637 6.972328 CCAAAAACCAATATGATTGTCCTACG 59.028 38.462 0.00 0.00 0.00 3.51
2456 2680 4.556942 TGCAAAAGATGTCTGACTTGTG 57.443 40.909 9.51 2.07 35.27 3.33
2484 2708 4.275689 TGAACATCTTTCATCGCAAGTTGT 59.724 37.500 4.48 0.00 36.26 3.32
2525 2749 6.074782 CGTAAACTGTTTGTGTTTGTGTTTGT 60.075 34.615 15.69 0.00 38.02 2.83
2526 2750 6.285465 CGTAAACTGTTTGTGTTTGTGTTTG 58.715 36.000 15.69 0.00 38.02 2.93
2527 2751 5.107798 GCGTAAACTGTTTGTGTTTGTGTTT 60.108 36.000 15.69 0.00 38.02 2.83
2528 2752 4.383351 GCGTAAACTGTTTGTGTTTGTGTT 59.617 37.500 15.69 0.00 38.02 3.32
2529 2753 3.915569 GCGTAAACTGTTTGTGTTTGTGT 59.084 39.130 15.69 0.00 38.02 3.72
2530 2754 3.914966 TGCGTAAACTGTTTGTGTTTGTG 59.085 39.130 15.69 0.00 38.02 3.33
2531 2755 4.162096 TGCGTAAACTGTTTGTGTTTGT 57.838 36.364 15.69 0.00 38.02 2.83
2532 2756 5.107837 TGTTTGCGTAAACTGTTTGTGTTTG 60.108 36.000 25.91 1.03 45.06 2.93
2533 2757 4.982916 TGTTTGCGTAAACTGTTTGTGTTT 59.017 33.333 25.91 0.00 45.06 2.83
2534 2758 4.383351 GTGTTTGCGTAAACTGTTTGTGTT 59.617 37.500 25.91 0.00 45.06 3.32
2535 2759 3.915569 GTGTTTGCGTAAACTGTTTGTGT 59.084 39.130 25.91 0.00 45.06 3.72
2536 2760 3.914966 TGTGTTTGCGTAAACTGTTTGTG 59.085 39.130 25.91 8.77 45.06 3.33
2556 2780 7.201714 GCATTCTATCAGAAGCAAAGATCTTGT 60.202 37.037 9.17 0.00 37.69 3.16
2576 2800 5.809001 TCTCCTATTGTGAAAGTGCATTCT 58.191 37.500 0.00 0.00 0.00 2.40
2588 2813 7.765307 AGCAAATGTTACAATCTCCTATTGTG 58.235 34.615 12.42 0.00 41.73 3.33
2688 2913 1.267806 GGCCATTCTATTGGATGCGTG 59.732 52.381 0.00 0.00 39.25 5.34
3118 3351 4.511527 CAGACAGCCTAACAGATCACATT 58.488 43.478 0.00 0.00 0.00 2.71
3121 3354 2.898705 CCAGACAGCCTAACAGATCAC 58.101 52.381 0.00 0.00 0.00 3.06
3188 3421 6.707608 TGACAACATCATATAGACTGGCAATC 59.292 38.462 0.00 0.00 29.99 2.67
3213 3446 7.308450 TGGAAATAAGCAGATAGTCTAGCAT 57.692 36.000 0.00 0.00 0.00 3.79
3254 3487 5.804979 ACAACAACGGATTATTATTTGCTGC 59.195 36.000 0.00 0.00 0.00 5.25
3256 3489 7.375053 ACAACAACAACGGATTATTATTTGCT 58.625 30.769 0.00 0.00 0.00 3.91
3277 3510 0.889994 TGATGGCCTGCAATGACAAC 59.110 50.000 3.32 0.00 0.00 3.32
3568 3801 3.666001 CGCATTTGCAGCATTTTGATTC 58.334 40.909 0.00 0.00 42.21 2.52
3631 3864 2.571212 TGTCAACCATCACCAACTGAC 58.429 47.619 0.00 0.00 34.99 3.51
3915 4152 0.685785 TCCTGCTGCAGACTAGAGGG 60.686 60.000 30.10 12.32 32.44 4.30
4086 4323 6.710744 GGACAACCTGAAATAGAGTGAGAAAA 59.289 38.462 0.00 0.00 0.00 2.29
4158 4395 4.820744 CCCGCCCCATCCAACAGG 62.821 72.222 0.00 0.00 0.00 4.00
4160 4397 3.260888 TTCCCGCCCCATCCAACA 61.261 61.111 0.00 0.00 0.00 3.33
4197 4434 2.818432 CAGAGCAAGAGTGGCTTCATTT 59.182 45.455 0.00 0.00 42.78 2.32
4298 4539 1.095600 GATGCCCGAACTCCTTTTCC 58.904 55.000 0.00 0.00 0.00 3.13
4313 4554 4.058817 GCTACTATACACAGGTTGGATGC 58.941 47.826 0.00 0.00 28.48 3.91
4335 4576 4.471904 TTTGACCCTACATGAGCTACTG 57.528 45.455 0.00 0.00 0.00 2.74
4386 4628 4.752101 GGATATACACAGCATGAACCAGAC 59.248 45.833 0.00 0.00 39.69 3.51
4445 4687 7.147880 ACACTATGACACTGAAAGACCTATACC 60.148 40.741 0.00 0.00 37.43 2.73
4698 4946 6.183360 GGTGATATAAGGTGCAAGTAAACCAC 60.183 42.308 0.00 0.00 39.05 4.16
4736 4984 5.591877 AGATAATTCACCTGGATGCACTTTC 59.408 40.000 0.00 0.00 0.00 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.