Multiple sequence alignment - TraesCS7D01G392200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G392200 chr7D 100.000 3509 0 0 1 3509 507229326 507232834 0.000000e+00 6481.0
1 TraesCS7D01G392200 chr7D 95.137 946 35 5 2571 3509 498414593 498413652 0.000000e+00 1482.0
2 TraesCS7D01G392200 chr7D 90.031 973 63 19 1520 2471 506901691 506902650 0.000000e+00 1229.0
3 TraesCS7D01G392200 chr7D 85.773 485 37 22 982 1440 506901165 506901643 5.270000e-133 484.0
4 TraesCS7D01G392200 chr7D 82.600 477 55 19 2027 2480 506819027 506819498 2.540000e-106 396.0
5 TraesCS7D01G392200 chr7D 86.859 312 23 10 2184 2482 506904341 506904647 2.020000e-87 333.0
6 TraesCS7D01G392200 chr7D 91.943 211 15 2 1520 1729 506818244 506818453 9.530000e-76 294.0
7 TraesCS7D01G392200 chr7D 89.474 209 19 3 1234 1441 506817979 506818185 9.660000e-66 261.0
8 TraesCS7D01G392200 chr7D 87.709 179 22 0 1262 1440 507302898 507303076 3.550000e-50 209.0
9 TraesCS7D01G392200 chr7D 84.507 213 24 3 1000 1211 506816564 506816768 5.940000e-48 202.0
10 TraesCS7D01G392200 chr5D 96.835 948 18 4 2570 3509 302011204 302010261 0.000000e+00 1574.0
11 TraesCS7D01G392200 chr5D 96.343 957 24 4 2560 3509 117886028 117886980 0.000000e+00 1563.0
12 TraesCS7D01G392200 chr5D 96.519 948 20 5 2570 3509 90695932 90694990 0.000000e+00 1555.0
13 TraesCS7D01G392200 chr7B 91.810 989 50 11 1510 2476 535637155 535638134 0.000000e+00 1349.0
14 TraesCS7D01G392200 chr7B 94.821 502 22 2 1019 1520 535636513 535637010 0.000000e+00 780.0
15 TraesCS7D01G392200 chr7B 84.253 743 79 23 1000 1729 535491330 535492047 0.000000e+00 689.0
16 TraesCS7D01G392200 chr7B 82.114 492 54 18 1804 2264 535494565 535495053 1.180000e-104 390.0
17 TraesCS7D01G392200 chr7B 78.591 369 56 14 1084 1439 535697477 535697835 4.560000e-54 222.0
18 TraesCS7D01G392200 chr7B 92.857 126 5 2 2570 2691 744173145 744173270 2.780000e-41 180.0
19 TraesCS7D01G392200 chr7B 91.566 83 6 1 463 544 109853327 109853245 2.860000e-21 113.0
20 TraesCS7D01G392200 chr5A 94.438 827 39 1 2690 3509 617222867 617223693 0.000000e+00 1266.0
21 TraesCS7D01G392200 chr5A 87.259 259 27 6 538 793 451403321 451403576 1.230000e-74 291.0
22 TraesCS7D01G392200 chr5A 90.441 136 8 3 2560 2691 196312341 196312207 1.290000e-39 174.0
23 TraesCS7D01G392200 chr5A 76.786 168 33 6 1272 1436 479397426 479397262 4.820000e-14 89.8
24 TraesCS7D01G392200 chr5B 94.337 830 36 5 2690 3509 692442643 692441815 0.000000e+00 1262.0
25 TraesCS7D01G392200 chr5B 89.872 859 56 17 2571 3409 686641033 686641880 0.000000e+00 1075.0
26 TraesCS7D01G392200 chr5B 89.419 860 58 17 2571 3409 686676549 686677396 0.000000e+00 1053.0
27 TraesCS7D01G392200 chr5B 93.045 532 30 1 2690 3214 125264272 125264803 0.000000e+00 771.0
28 TraesCS7D01G392200 chr5B 88.065 553 54 8 1 544 615027318 615027867 0.000000e+00 645.0
29 TraesCS7D01G392200 chr5B 86.400 250 29 5 549 797 222409014 222409259 5.770000e-68 268.0
30 TraesCS7D01G392200 chr3B 93.954 827 42 2 2690 3509 39603271 39602446 0.000000e+00 1243.0
31 TraesCS7D01G392200 chr2A 90.909 572 31 14 2937 3506 546776553 546777105 0.000000e+00 749.0
32 TraesCS7D01G392200 chr2A 84.429 289 34 6 561 846 162297378 162297098 1.240000e-69 274.0
33 TraesCS7D01G392200 chr7A 91.084 572 19 11 1494 2041 575100209 575100772 0.000000e+00 745.0
34 TraesCS7D01G392200 chr7A 87.801 623 50 13 882 1494 575099331 575099937 0.000000e+00 706.0
35 TraesCS7D01G392200 chr7A 88.222 450 38 10 2035 2470 575101455 575101903 1.120000e-144 523.0
36 TraesCS7D01G392200 chr7A 80.303 726 87 30 1804 2480 574685617 574686335 6.760000e-137 497.0
37 TraesCS7D01G392200 chr7A 85.321 436 22 22 2559 2954 99582527 99582960 2.520000e-111 412.0
38 TraesCS7D01G392200 chr7A 83.589 457 53 14 1000 1439 574684452 574684903 3.260000e-110 409.0
39 TraesCS7D01G392200 chr7A 90.783 217 18 2 1513 1729 574684947 574685161 4.430000e-74 289.0
40 TraesCS7D01G392200 chr7A 91.824 159 13 0 1282 1440 577206351 577206509 4.560000e-54 222.0
41 TraesCS7D01G392200 chr6B 88.478 460 38 8 11 465 604713822 604714271 3.080000e-150 542.0
42 TraesCS7D01G392200 chr6B 86.335 322 14 12 2690 3003 560628791 560629090 1.210000e-84 324.0
43 TraesCS7D01G392200 chr6B 84.320 338 30 5 210 543 105860682 105861000 3.400000e-80 309.0
44 TraesCS7D01G392200 chr6B 86.179 246 29 5 549 792 717167041 717167283 9.660000e-66 261.0
45 TraesCS7D01G392200 chr6B 92.035 113 5 4 52 162 105860569 105860679 4.690000e-34 156.0
46 TraesCS7D01G392200 chr3D 84.699 549 48 17 1 528 26280029 26280562 1.870000e-142 516.0
47 TraesCS7D01G392200 chr3D 85.231 325 19 8 1 325 593444891 593445186 1.220000e-79 307.0
48 TraesCS7D01G392200 chr3D 90.816 98 5 1 403 496 593445186 593445283 1.020000e-25 128.0
49 TraesCS7D01G392200 chr3D 91.250 80 7 0 464 543 523778237 523778316 3.700000e-20 110.0
50 TraesCS7D01G392200 chr2B 85.441 522 46 16 18 529 799257760 799257259 1.870000e-142 516.0
51 TraesCS7D01G392200 chr2B 83.747 443 60 10 111 544 581055534 581055973 3.260000e-110 409.0
52 TraesCS7D01G392200 chr2B 78.686 563 97 16 1 543 455681810 455681251 1.550000e-93 353.0
53 TraesCS7D01G392200 chr6A 88.217 314 30 5 1 307 26627004 26627317 5.530000e-98 368.0
54 TraesCS7D01G392200 chr6A 81.733 427 19 31 2570 2957 162191498 162191092 5.690000e-78 302.0
55 TraesCS7D01G392200 chr6A 73.298 573 106 39 2 544 584005462 584006017 2.170000e-37 167.0
56 TraesCS7D01G392200 chr6A 90.244 82 6 2 463 543 327491767 327491687 4.790000e-19 106.0
57 TraesCS7D01G392200 chr2D 90.295 237 19 4 549 783 613463892 613464126 1.220000e-79 307.0
58 TraesCS7D01G392200 chr2D 88.115 244 25 4 541 781 613461987 613462229 1.590000e-73 287.0
59 TraesCS7D01G392200 chr1D 87.755 245 26 4 541 782 55972778 55973021 2.060000e-72 283.0
60 TraesCS7D01G392200 chr1A 83.219 292 37 10 567 847 577585133 577584843 1.250000e-64 257.0
61 TraesCS7D01G392200 chr1A 82.019 317 42 12 549 851 577586601 577586286 4.490000e-64 255.0
62 TraesCS7D01G392200 chr4D 89.157 83 9 0 462 544 487454342 487454424 1.720000e-18 104.0
63 TraesCS7D01G392200 chr3A 76.812 207 26 16 2 192 714623559 714623759 2.880000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G392200 chr7D 507229326 507232834 3508 False 6481.000000 6481 100.000000 1 3509 1 chr7D.!!$F1 3508
1 TraesCS7D01G392200 chr7D 498413652 498414593 941 True 1482.000000 1482 95.137000 2571 3509 1 chr7D.!!$R1 938
2 TraesCS7D01G392200 chr7D 506901165 506904647 3482 False 682.000000 1229 87.554333 982 2482 3 chr7D.!!$F4 1500
3 TraesCS7D01G392200 chr7D 506816564 506819498 2934 False 288.250000 396 87.131000 1000 2480 4 chr7D.!!$F3 1480
4 TraesCS7D01G392200 chr5D 302010261 302011204 943 True 1574.000000 1574 96.835000 2570 3509 1 chr5D.!!$R2 939
5 TraesCS7D01G392200 chr5D 117886028 117886980 952 False 1563.000000 1563 96.343000 2560 3509 1 chr5D.!!$F1 949
6 TraesCS7D01G392200 chr5D 90694990 90695932 942 True 1555.000000 1555 96.519000 2570 3509 1 chr5D.!!$R1 939
7 TraesCS7D01G392200 chr7B 535636513 535638134 1621 False 1064.500000 1349 93.315500 1019 2476 2 chr7B.!!$F4 1457
8 TraesCS7D01G392200 chr7B 535491330 535495053 3723 False 539.500000 689 83.183500 1000 2264 2 chr7B.!!$F3 1264
9 TraesCS7D01G392200 chr5A 617222867 617223693 826 False 1266.000000 1266 94.438000 2690 3509 1 chr5A.!!$F2 819
10 TraesCS7D01G392200 chr5B 692441815 692442643 828 True 1262.000000 1262 94.337000 2690 3509 1 chr5B.!!$R1 819
11 TraesCS7D01G392200 chr5B 686641033 686641880 847 False 1075.000000 1075 89.872000 2571 3409 1 chr5B.!!$F4 838
12 TraesCS7D01G392200 chr5B 686676549 686677396 847 False 1053.000000 1053 89.419000 2571 3409 1 chr5B.!!$F5 838
13 TraesCS7D01G392200 chr5B 125264272 125264803 531 False 771.000000 771 93.045000 2690 3214 1 chr5B.!!$F1 524
14 TraesCS7D01G392200 chr5B 615027318 615027867 549 False 645.000000 645 88.065000 1 544 1 chr5B.!!$F3 543
15 TraesCS7D01G392200 chr3B 39602446 39603271 825 True 1243.000000 1243 93.954000 2690 3509 1 chr3B.!!$R1 819
16 TraesCS7D01G392200 chr2A 546776553 546777105 552 False 749.000000 749 90.909000 2937 3506 1 chr2A.!!$F1 569
17 TraesCS7D01G392200 chr7A 575099331 575101903 2572 False 658.000000 745 89.035667 882 2470 3 chr7A.!!$F4 1588
18 TraesCS7D01G392200 chr7A 574684452 574686335 1883 False 398.333333 497 84.891667 1000 2480 3 chr7A.!!$F3 1480
19 TraesCS7D01G392200 chr3D 26280029 26280562 533 False 516.000000 516 84.699000 1 528 1 chr3D.!!$F1 527
20 TraesCS7D01G392200 chr2B 799257259 799257760 501 True 516.000000 516 85.441000 18 529 1 chr2B.!!$R2 511
21 TraesCS7D01G392200 chr2B 455681251 455681810 559 True 353.000000 353 78.686000 1 543 1 chr2B.!!$R1 542
22 TraesCS7D01G392200 chr2D 613461987 613464126 2139 False 297.000000 307 89.205000 541 783 2 chr2D.!!$F1 242
23 TraesCS7D01G392200 chr1A 577584843 577586601 1758 True 256.000000 257 82.619000 549 851 2 chr1A.!!$R1 302

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
954 2279 0.104855 GGCCGAGTGATATGTGCTGA 59.895 55.0 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2525 9660 0.109919 GACGAAAACGGTGGATTGCC 60.11 55.0 0.0 0.0 0.0 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 29 5.362987 TTGTGTTTTAACAAATGTTCGCG 57.637 34.783 0.00 0.00 41.21 5.87
279 302 4.377021 CACTACCAAGTAACAGCAAGTCA 58.623 43.478 0.00 0.00 33.48 3.41
280 303 4.211374 CACTACCAAGTAACAGCAAGTCAC 59.789 45.833 0.00 0.00 33.48 3.67
301 324 4.806247 CACATTTAGTAGAGTGGCTAGCAC 59.194 45.833 18.24 12.66 0.00 4.40
307 330 3.578716 AGTAGAGTGGCTAGCACTTTGAA 59.421 43.478 18.24 3.20 32.33 2.69
333 356 0.107410 AACGTGAGCACTTGGGTTCA 60.107 50.000 0.00 0.00 0.00 3.18
392 423 0.249120 TGTTGGTACAGGATCCGCTG 59.751 55.000 5.98 2.38 42.39 5.18
426 462 3.868757 TCCTGGTTCTGTCGTAGATTG 57.131 47.619 0.00 0.00 40.67 2.67
450 489 2.426522 TGGCAGAAACAAATCGGAGAG 58.573 47.619 0.00 0.00 43.63 3.20
452 491 1.806542 GCAGAAACAAATCGGAGAGCA 59.193 47.619 0.00 0.00 43.63 4.26
453 492 2.226437 GCAGAAACAAATCGGAGAGCAA 59.774 45.455 0.00 0.00 43.63 3.91
693 2001 8.812147 TTACTAAATAATCTACGTCAGCATGG 57.188 34.615 0.00 0.00 36.16 3.66
700 2008 3.585862 TCTACGTCAGCATGGAAAGTTC 58.414 45.455 0.00 0.00 36.16 3.01
737 2046 5.682943 TTTTTCCGTTGTGTTAGAGGATG 57.317 39.130 0.00 0.00 0.00 3.51
740 2049 2.094906 TCCGTTGTGTTAGAGGATGACG 60.095 50.000 0.00 0.00 0.00 4.35
742 2051 1.654105 GTTGTGTTAGAGGATGACGCG 59.346 52.381 3.53 3.53 30.79 6.01
751 2060 6.035650 TGTTAGAGGATGACGCGAAAATAAAG 59.964 38.462 15.93 0.00 0.00 1.85
753 2062 3.006940 AGGATGACGCGAAAATAAAGCA 58.993 40.909 15.93 0.00 0.00 3.91
759 2068 1.199097 CGCGAAAATAAAGCAGTGGGT 59.801 47.619 0.00 0.00 0.00 4.51
767 2076 2.236959 AAAGCAGTGGGTTGGTGGGT 62.237 55.000 0.00 0.00 34.38 4.51
770 2079 3.507713 AGTGGGTTGGTGGGTGGG 61.508 66.667 0.00 0.00 0.00 4.61
772 2081 4.865228 TGGGTTGGTGGGTGGGGA 62.865 66.667 0.00 0.00 0.00 4.81
773 2082 4.295199 GGGTTGGTGGGTGGGGAC 62.295 72.222 0.00 0.00 0.00 4.46
800 2118 4.950205 AAACTAGACGAAAAGAGGGACA 57.050 40.909 0.00 0.00 0.00 4.02
828 2147 7.971368 AAAACATAAATACCAGCCTACCAAT 57.029 32.000 0.00 0.00 0.00 3.16
833 2152 3.669939 ATACCAGCCTACCAATTGCTT 57.330 42.857 0.00 0.00 31.77 3.91
840 2159 4.883585 CAGCCTACCAATTGCTTCATTAGA 59.116 41.667 0.00 0.00 31.77 2.10
861 2180 9.751542 ATTAGAAGTAGAAATGTTCTATGACCG 57.248 33.333 1.29 0.00 43.59 4.79
862 2181 6.043411 AGAAGTAGAAATGTTCTATGACCGC 58.957 40.000 1.29 0.00 43.59 5.68
863 2182 5.599999 AGTAGAAATGTTCTATGACCGCT 57.400 39.130 1.29 0.00 43.59 5.52
864 2183 5.978814 AGTAGAAATGTTCTATGACCGCTT 58.021 37.500 1.29 0.00 43.59 4.68
865 2184 6.407202 AGTAGAAATGTTCTATGACCGCTTT 58.593 36.000 1.29 0.00 43.59 3.51
866 2185 5.803020 AGAAATGTTCTATGACCGCTTTC 57.197 39.130 0.00 0.00 38.49 2.62
867 2186 5.245531 AGAAATGTTCTATGACCGCTTTCA 58.754 37.500 0.00 0.00 38.49 2.69
868 2187 5.882557 AGAAATGTTCTATGACCGCTTTCAT 59.117 36.000 2.81 2.81 38.49 2.57
869 2188 5.741388 AATGTTCTATGACCGCTTTCATC 57.259 39.130 0.48 0.00 37.42 2.92
870 2189 4.200838 TGTTCTATGACCGCTTTCATCA 57.799 40.909 0.48 0.00 37.42 3.07
871 2190 4.769688 TGTTCTATGACCGCTTTCATCAT 58.230 39.130 0.48 0.00 37.42 2.45
872 2191 5.185454 TGTTCTATGACCGCTTTCATCATT 58.815 37.500 0.48 0.00 37.42 2.57
873 2192 6.345298 TGTTCTATGACCGCTTTCATCATTA 58.655 36.000 0.48 0.00 37.42 1.90
874 2193 6.821160 TGTTCTATGACCGCTTTCATCATTAA 59.179 34.615 0.48 0.00 37.42 1.40
875 2194 6.844696 TCTATGACCGCTTTCATCATTAAC 57.155 37.500 0.48 0.00 37.42 2.01
876 2195 6.582636 TCTATGACCGCTTTCATCATTAACT 58.417 36.000 0.48 0.00 37.42 2.24
877 2196 5.741388 ATGACCGCTTTCATCATTAACTC 57.259 39.130 0.00 0.00 29.74 3.01
878 2197 3.938963 TGACCGCTTTCATCATTAACTCC 59.061 43.478 0.00 0.00 0.00 3.85
879 2198 3.938963 GACCGCTTTCATCATTAACTCCA 59.061 43.478 0.00 0.00 0.00 3.86
880 2199 4.526970 ACCGCTTTCATCATTAACTCCAT 58.473 39.130 0.00 0.00 0.00 3.41
940 2265 2.920912 ACTTTCTGGGACGGCCGA 60.921 61.111 35.90 8.44 33.83 5.54
947 2272 1.456892 TGGGACGGCCGAGTGATAT 60.457 57.895 35.90 7.12 33.83 1.63
950 2275 0.597637 GGACGGCCGAGTGATATGTG 60.598 60.000 35.90 0.00 0.00 3.21
953 2278 1.217585 CGGCCGAGTGATATGTGCTG 61.218 60.000 24.07 0.00 0.00 4.41
954 2279 0.104855 GGCCGAGTGATATGTGCTGA 59.895 55.000 0.00 0.00 0.00 4.26
958 2283 2.547430 CCGAGTGATATGTGCTGAGCAT 60.547 50.000 11.58 0.00 41.91 3.79
964 2289 1.575244 TATGTGCTGAGCATCGAAGC 58.425 50.000 11.58 4.05 41.91 3.86
965 2290 1.094073 ATGTGCTGAGCATCGAAGCC 61.094 55.000 11.58 1.60 41.91 4.35
968 2293 1.300971 TGCTGAGCATCGAAGCCAAC 61.301 55.000 9.36 3.59 38.61 3.77
969 2294 1.023513 GCTGAGCATCGAAGCCAACT 61.024 55.000 9.36 0.00 38.61 3.16
970 2295 1.446907 CTGAGCATCGAAGCCAACTT 58.553 50.000 9.36 0.00 38.61 2.66
971 2296 2.621338 CTGAGCATCGAAGCCAACTTA 58.379 47.619 9.36 0.00 38.61 2.24
972 2297 3.201290 CTGAGCATCGAAGCCAACTTAT 58.799 45.455 9.36 0.00 38.61 1.73
973 2298 4.371786 CTGAGCATCGAAGCCAACTTATA 58.628 43.478 9.36 0.00 38.61 0.98
974 2299 4.371786 TGAGCATCGAAGCCAACTTATAG 58.628 43.478 9.36 0.00 38.61 1.31
975 2300 4.141937 TGAGCATCGAAGCCAACTTATAGT 60.142 41.667 9.36 0.00 38.61 2.12
976 2301 5.068591 TGAGCATCGAAGCCAACTTATAGTA 59.931 40.000 9.36 0.00 38.61 1.82
977 2302 5.290386 AGCATCGAAGCCAACTTATAGTAC 58.710 41.667 9.36 0.00 35.82 2.73
978 2303 4.148348 GCATCGAAGCCAACTTATAGTACG 59.852 45.833 0.00 0.00 35.82 3.67
979 2304 4.970662 TCGAAGCCAACTTATAGTACGT 57.029 40.909 0.00 0.00 35.82 3.57
980 2305 4.913376 TCGAAGCCAACTTATAGTACGTC 58.087 43.478 0.00 0.00 35.82 4.34
981 2306 4.395854 TCGAAGCCAACTTATAGTACGTCA 59.604 41.667 0.00 0.00 35.82 4.35
982 2307 5.097529 CGAAGCCAACTTATAGTACGTCAA 58.902 41.667 0.00 0.00 35.82 3.18
983 2308 5.747197 CGAAGCCAACTTATAGTACGTCAAT 59.253 40.000 0.00 0.00 35.82 2.57
996 2321 1.293924 CGTCAATCCAGACATCCAGC 58.706 55.000 0.00 0.00 38.43 4.85
1012 2337 1.000283 CCAGCAGTCTCTCAGTTTCGT 60.000 52.381 0.00 0.00 0.00 3.85
1016 2341 2.667137 CAGTCTCTCAGTTTCGTGTCC 58.333 52.381 0.00 0.00 0.00 4.02
1017 2342 2.034685 CAGTCTCTCAGTTTCGTGTCCA 59.965 50.000 0.00 0.00 0.00 4.02
1035 2367 1.270907 CAAGTACAGACAGGGGAGCT 58.729 55.000 0.00 0.00 0.00 4.09
1045 2377 1.223077 ACAGGGGAGCTATATGGACCA 59.777 52.381 0.00 0.00 0.00 4.02
1222 3756 7.106239 TCTTGAGATGATCCCTTGTAAGTTTC 58.894 38.462 0.00 0.00 0.00 2.78
1228 3762 2.762745 TCCCTTGTAAGTTTCTGCGAC 58.237 47.619 0.00 0.00 0.00 5.19
1498 4645 3.357203 TGTTGTGCCTGTACTTTTTGGA 58.643 40.909 0.00 0.00 0.00 3.53
1530 5065 9.571810 TTACGGTAGTATATATAATTGGTTGCG 57.428 33.333 0.00 0.00 32.12 4.85
1635 5170 3.608662 TGGTGGTGTCGTCGGTCC 61.609 66.667 0.00 0.00 0.00 4.46
1661 5196 1.455822 TCTTCATCAACCCCAACCCT 58.544 50.000 0.00 0.00 0.00 4.34
1748 6965 5.067936 GGTGAATTTCCATCGTCTCTAGAGA 59.932 44.000 18.76 18.76 34.56 3.10
1749 6966 6.405953 GGTGAATTTCCATCGTCTCTAGAGAA 60.406 42.308 23.96 10.31 39.48 2.87
1752 7026 6.723298 ATTTCCATCGTCTCTAGAGAACAT 57.277 37.500 23.96 15.16 39.48 2.71
2077 9181 4.429212 TGGACGCCATGGACGACG 62.429 66.667 27.68 18.79 0.00 5.12
2097 9201 0.625849 GGGTGAGGAACATGGTGGAT 59.374 55.000 0.00 0.00 0.00 3.41
2134 9238 1.153249 GCCCTTATGCTGGCGTACA 60.153 57.895 0.00 0.00 38.00 2.90
2242 9346 1.877443 CCAACCTGAACTACCCAAACG 59.123 52.381 0.00 0.00 0.00 3.60
2249 9353 3.656559 TGAACTACCCAAACGAGTAAGC 58.343 45.455 0.00 0.00 0.00 3.09
2254 9358 1.024579 CCCAAACGAGTAAGCGCCAT 61.025 55.000 2.29 0.00 33.86 4.40
2264 9369 3.123804 AGTAAGCGCCATCACTTAATCG 58.876 45.455 2.29 0.00 30.53 3.34
2265 9370 2.309528 AAGCGCCATCACTTAATCGA 57.690 45.000 2.29 0.00 0.00 3.59
2276 9409 6.238566 CCATCACTTAATCGATCTGTGCAAAT 60.239 38.462 15.87 6.46 0.00 2.32
2279 9412 5.228635 CACTTAATCGATCTGTGCAAATTGC 59.771 40.000 11.58 11.58 45.29 3.56
2291 9424 2.187707 GCAAATTGCAAGCCGAGTATG 58.812 47.619 13.73 0.00 44.26 2.39
2309 9442 5.144100 AGTATGAACTCTCGGGATTCTGAT 58.856 41.667 8.34 0.08 0.00 2.90
2315 9448 0.032678 CTCGGGATTCTGATGACGGG 59.967 60.000 0.00 0.00 0.00 5.28
2351 9484 1.966451 GTTCGTTCAGCTGGTGGGG 60.966 63.158 15.13 0.00 0.00 4.96
2407 9542 0.995024 CTGGGGTGGAAGTTCAGGAT 59.005 55.000 5.01 0.00 0.00 3.24
2476 9611 1.134461 CATACTGAGCTGAGCTTGGCT 60.134 52.381 9.00 13.03 39.88 4.75
2481 9616 0.179936 GAGCTGAGCTTGGCTATGGT 59.820 55.000 9.00 0.00 39.88 3.55
2482 9617 0.107312 AGCTGAGCTTGGCTATGGTG 60.107 55.000 0.00 0.00 39.88 4.17
2484 9619 1.661341 CTGAGCTTGGCTATGGTGTC 58.339 55.000 0.00 0.00 39.88 3.67
2485 9620 0.983467 TGAGCTTGGCTATGGTGTCA 59.017 50.000 0.00 0.00 39.88 3.58
2486 9621 1.561076 TGAGCTTGGCTATGGTGTCAT 59.439 47.619 0.00 0.00 39.88 3.06
2489 9624 1.473257 GCTTGGCTATGGTGTCATCGA 60.473 52.381 0.00 0.00 34.96 3.59
2490 9625 2.905075 CTTGGCTATGGTGTCATCGAA 58.095 47.619 0.00 0.00 34.96 3.71
2491 9626 3.470709 CTTGGCTATGGTGTCATCGAAT 58.529 45.455 0.00 0.00 34.96 3.34
2493 9628 4.681074 TGGCTATGGTGTCATCGAATAA 57.319 40.909 0.00 0.00 34.96 1.40
2494 9629 5.029807 TGGCTATGGTGTCATCGAATAAA 57.970 39.130 0.00 0.00 34.96 1.40
2495 9630 5.620206 TGGCTATGGTGTCATCGAATAAAT 58.380 37.500 0.00 0.00 34.96 1.40
2496 9631 6.764379 TGGCTATGGTGTCATCGAATAAATA 58.236 36.000 0.00 0.00 34.96 1.40
2498 9633 7.882791 TGGCTATGGTGTCATCGAATAAATAAT 59.117 33.333 0.00 0.00 34.96 1.28
2499 9634 8.730680 GGCTATGGTGTCATCGAATAAATAATT 58.269 33.333 0.00 0.00 34.96 1.40
2505 9640 9.673454 GGTGTCATCGAATAAATAATTTTACCC 57.327 33.333 0.00 0.00 30.33 3.69
2509 9644 9.906660 TCATCGAATAAATAATTTTACCCATGC 57.093 29.630 0.00 0.00 30.33 4.06
2510 9645 9.689976 CATCGAATAAATAATTTTACCCATGCA 57.310 29.630 0.00 0.00 30.33 3.96
2511 9646 9.912634 ATCGAATAAATAATTTTACCCATGCAG 57.087 29.630 0.00 0.00 30.33 4.41
2512 9647 8.356657 TCGAATAAATAATTTTACCCATGCAGG 58.643 33.333 0.00 0.00 30.33 4.85
2529 9664 2.672295 GGATGTACCCGTGGGCAA 59.328 61.111 4.41 0.00 39.32 4.52
2531 9666 0.818040 GGATGTACCCGTGGGCAATC 60.818 60.000 4.41 5.76 39.32 2.67
2533 9668 1.567208 ATGTACCCGTGGGCAATCCA 61.567 55.000 4.41 0.00 44.79 3.41
2540 9675 4.609098 TGGGCAATCCACCGTTTT 57.391 50.000 0.00 0.00 41.46 2.43
2543 9678 1.520600 GGGCAATCCACCGTTTTCGT 61.521 55.000 0.00 0.00 37.23 3.85
2544 9679 0.109919 GGCAATCCACCGTTTTCGTC 60.110 55.000 0.00 0.00 42.35 4.20
2546 9681 1.002251 GCAATCCACCGTTTTCGTCAA 60.002 47.619 0.00 0.00 42.35 3.18
2547 9682 2.916111 CAATCCACCGTTTTCGTCAAG 58.084 47.619 0.00 0.00 42.35 3.02
2548 9683 2.536761 ATCCACCGTTTTCGTCAAGA 57.463 45.000 0.00 0.00 42.35 3.02
2551 9686 1.463444 CCACCGTTTTCGTCAAGATCC 59.537 52.381 0.00 0.00 42.35 3.36
2554 9689 1.126113 CCGTTTTCGTCAAGATCCGTG 59.874 52.381 0.00 0.00 42.35 4.94
2555 9690 2.055838 CGTTTTCGTCAAGATCCGTGA 58.944 47.619 0.00 0.00 38.65 4.35
2557 9692 3.421826 CGTTTTCGTCAAGATCCGTGAAG 60.422 47.826 0.00 1.66 38.65 3.02
2559 9694 1.254026 TCGTCAAGATCCGTGAAGGT 58.746 50.000 9.16 0.00 41.99 3.50
2560 9695 1.616865 TCGTCAAGATCCGTGAAGGTT 59.383 47.619 9.16 0.00 41.99 3.50
2562 9697 2.806244 CGTCAAGATCCGTGAAGGTTTT 59.194 45.455 0.00 0.00 41.99 2.43
2563 9698 3.991773 CGTCAAGATCCGTGAAGGTTTTA 59.008 43.478 0.00 0.00 41.99 1.52
2564 9699 4.630069 CGTCAAGATCCGTGAAGGTTTTAT 59.370 41.667 0.00 0.00 41.99 1.40
2567 9702 6.817140 GTCAAGATCCGTGAAGGTTTTATACT 59.183 38.462 0.00 0.00 41.99 2.12
2568 9703 7.333672 GTCAAGATCCGTGAAGGTTTTATACTT 59.666 37.037 0.00 0.00 41.99 2.24
2591 9726 0.541392 TAGATGACCAGTTGCGCCAT 59.459 50.000 4.18 0.00 0.00 4.40
2996 10626 8.425703 GCCCTCAGTTCTAATTTCTATAAGAGT 58.574 37.037 0.00 0.00 0.00 3.24
3108 10810 3.053896 GGCGTACCAAAAGCGGCT 61.054 61.111 0.00 0.00 45.58 5.52
3144 10846 2.383245 CTGGGCGTGAGGAGTTGTGT 62.383 60.000 0.00 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 18 2.519002 TCCGAATTCGCGAACATTTG 57.481 45.000 26.00 18.36 38.18 2.32
27 29 8.616076 ACTGTAATGAATGATTCTTCCGAATTC 58.384 33.333 6.73 0.00 39.89 2.17
208 229 4.806247 GCGTCATATACTGAGAGCAAAACT 59.194 41.667 0.00 0.00 38.14 2.66
279 302 5.012328 GTGCTAGCCACTCTACTAAATGT 57.988 43.478 13.29 0.00 41.35 2.71
301 324 2.286418 GCTCACGTTGGACACTTCAAAG 60.286 50.000 0.00 0.00 0.00 2.77
307 330 0.178068 AAGTGCTCACGTTGGACACT 59.822 50.000 11.42 8.20 43.14 3.55
426 462 3.712187 TCCGATTTGTTTCTGCCAAAAC 58.288 40.909 4.54 4.54 39.16 2.43
450 489 1.957186 TACGTCAACGCACCCTTGC 60.957 57.895 1.81 0.00 46.21 4.01
452 491 1.662446 CGTACGTCAACGCACCCTT 60.662 57.895 7.22 0.00 44.43 3.95
453 492 2.049802 CGTACGTCAACGCACCCT 60.050 61.111 7.22 0.00 44.43 4.34
569 611 7.693952 TCGCTCAATCACATTAATTAGGAAAC 58.306 34.615 0.00 0.00 0.00 2.78
665 1973 9.982651 ATGCTGACGTAGATTATTTAGTAATGT 57.017 29.630 0.00 0.00 33.16 2.71
679 1987 3.258372 AGAACTTTCCATGCTGACGTAGA 59.742 43.478 0.00 0.00 0.00 2.59
680 1988 3.369147 CAGAACTTTCCATGCTGACGTAG 59.631 47.826 0.00 0.00 0.00 3.51
682 1990 2.146342 CAGAACTTTCCATGCTGACGT 58.854 47.619 0.00 0.00 0.00 4.34
685 1993 3.614092 GGATCAGAACTTTCCATGCTGA 58.386 45.455 0.00 0.00 39.61 4.26
720 2028 2.259618 CGTCATCCTCTAACACAACGG 58.740 52.381 0.00 0.00 0.00 4.44
721 2029 1.654105 GCGTCATCCTCTAACACAACG 59.346 52.381 0.00 0.00 0.00 4.10
722 2030 1.654105 CGCGTCATCCTCTAACACAAC 59.346 52.381 0.00 0.00 0.00 3.32
729 2038 4.506654 GCTTTATTTTCGCGTCATCCTCTA 59.493 41.667 5.77 0.00 0.00 2.43
735 2044 3.426159 CCACTGCTTTATTTTCGCGTCAT 60.426 43.478 5.77 0.00 0.00 3.06
737 2046 2.505866 CCACTGCTTTATTTTCGCGTC 58.494 47.619 5.77 0.00 0.00 5.19
740 2049 2.986479 CAACCCACTGCTTTATTTTCGC 59.014 45.455 0.00 0.00 0.00 4.70
742 2051 4.306600 CACCAACCCACTGCTTTATTTTC 58.693 43.478 0.00 0.00 0.00 2.29
751 2060 2.912025 CACCCACCAACCCACTGC 60.912 66.667 0.00 0.00 0.00 4.40
753 2062 3.507713 CCCACCCACCAACCCACT 61.508 66.667 0.00 0.00 0.00 4.00
759 2068 1.934459 TTTTCGTCCCCACCCACCAA 61.934 55.000 0.00 0.00 0.00 3.67
808 2126 5.536161 AGCAATTGGTAGGCTGGTATTTATG 59.464 40.000 8.73 0.00 36.34 1.90
809 2127 5.705400 AGCAATTGGTAGGCTGGTATTTAT 58.295 37.500 8.73 0.00 36.34 1.40
810 2128 5.124036 AGCAATTGGTAGGCTGGTATTTA 57.876 39.130 8.73 0.00 36.34 1.40
811 2129 3.981212 AGCAATTGGTAGGCTGGTATTT 58.019 40.909 8.73 0.00 36.34 1.40
812 2130 3.669939 AGCAATTGGTAGGCTGGTATT 57.330 42.857 8.73 0.00 36.34 1.89
814 2132 2.307392 TGAAGCAATTGGTAGGCTGGTA 59.693 45.455 11.15 0.00 38.04 3.25
817 2135 4.883585 TCTAATGAAGCAATTGGTAGGCTG 59.116 41.667 11.15 0.90 38.04 4.85
828 2147 9.507329 AGAACATTTCTACTTCTAATGAAGCAA 57.493 29.630 5.79 0.00 41.78 3.91
840 2159 5.978814 AGCGGTCATAGAACATTTCTACTT 58.021 37.500 0.00 0.00 44.43 2.24
847 2166 5.185454 TGATGAAAGCGGTCATAGAACATT 58.815 37.500 5.29 0.00 38.38 2.71
851 2170 7.047891 AGTTAATGATGAAAGCGGTCATAGAA 58.952 34.615 5.29 0.00 38.38 2.10
852 2171 6.582636 AGTTAATGATGAAAGCGGTCATAGA 58.417 36.000 5.29 0.00 38.38 1.98
853 2172 6.073548 GGAGTTAATGATGAAAGCGGTCATAG 60.074 42.308 5.29 0.00 38.38 2.23
854 2173 5.758296 GGAGTTAATGATGAAAGCGGTCATA 59.242 40.000 5.29 0.00 38.38 2.15
855 2174 4.576463 GGAGTTAATGATGAAAGCGGTCAT 59.424 41.667 5.01 5.01 41.01 3.06
856 2175 3.938963 GGAGTTAATGATGAAAGCGGTCA 59.061 43.478 0.00 0.00 0.00 4.02
857 2176 3.938963 TGGAGTTAATGATGAAAGCGGTC 59.061 43.478 0.00 0.00 0.00 4.79
858 2177 3.950397 TGGAGTTAATGATGAAAGCGGT 58.050 40.909 0.00 0.00 0.00 5.68
859 2178 6.808008 ATATGGAGTTAATGATGAAAGCGG 57.192 37.500 0.00 0.00 0.00 5.52
860 2179 7.041167 TGGAATATGGAGTTAATGATGAAAGCG 60.041 37.037 0.00 0.00 0.00 4.68
861 2180 8.169977 TGGAATATGGAGTTAATGATGAAAGC 57.830 34.615 0.00 0.00 0.00 3.51
897 2216 9.701098 TGTAAACTAGTCGTACAATTTTGATCT 57.299 29.630 14.08 0.00 0.00 2.75
898 2217 9.737025 GTGTAAACTAGTCGTACAATTTTGATC 57.263 33.333 16.81 0.00 29.93 2.92
900 2219 8.876275 AGTGTAAACTAGTCGTACAATTTTGA 57.124 30.769 16.81 0.00 29.93 2.69
901 2220 9.925268 AAAGTGTAAACTAGTCGTACAATTTTG 57.075 29.630 24.76 0.00 40.92 2.44
903 2222 9.538508 AGAAAGTGTAAACTAGTCGTACAATTT 57.461 29.630 27.67 27.67 44.24 1.82
906 2225 6.919662 CCAGAAAGTGTAAACTAGTCGTACAA 59.080 38.462 16.81 3.99 29.93 2.41
922 2247 2.742372 CGGCCGTCCCAGAAAGTG 60.742 66.667 19.50 0.00 0.00 3.16
940 2265 2.363359 TCGATGCTCAGCACATATCACT 59.637 45.455 0.00 0.00 43.04 3.41
947 2272 1.742880 GGCTTCGATGCTCAGCACA 60.743 57.895 21.05 0.00 43.04 4.57
950 2275 1.023513 AGTTGGCTTCGATGCTCAGC 61.024 55.000 21.05 17.70 0.00 4.26
953 2278 4.372656 ACTATAAGTTGGCTTCGATGCTC 58.627 43.478 21.05 12.59 36.22 4.26
954 2279 4.408182 ACTATAAGTTGGCTTCGATGCT 57.592 40.909 21.05 5.38 36.22 3.79
958 2283 4.395854 TGACGTACTATAAGTTGGCTTCGA 59.604 41.667 0.00 0.00 36.22 3.71
964 2289 6.696148 GTCTGGATTGACGTACTATAAGTTGG 59.304 42.308 0.00 0.00 0.00 3.77
965 2290 7.255569 TGTCTGGATTGACGTACTATAAGTTG 58.744 38.462 0.00 0.00 39.64 3.16
968 2293 7.085116 GGATGTCTGGATTGACGTACTATAAG 58.915 42.308 0.00 0.00 39.64 1.73
969 2294 6.548251 TGGATGTCTGGATTGACGTACTATAA 59.452 38.462 0.00 0.00 37.61 0.98
970 2295 6.066032 TGGATGTCTGGATTGACGTACTATA 58.934 40.000 0.00 0.00 37.61 1.31
971 2296 4.893524 TGGATGTCTGGATTGACGTACTAT 59.106 41.667 0.00 0.00 37.61 2.12
972 2297 4.274978 TGGATGTCTGGATTGACGTACTA 58.725 43.478 0.00 0.00 37.61 1.82
973 2298 3.096852 TGGATGTCTGGATTGACGTACT 58.903 45.455 0.00 0.00 37.61 2.73
974 2299 3.448686 CTGGATGTCTGGATTGACGTAC 58.551 50.000 0.00 0.00 39.64 3.67
975 2300 2.159099 GCTGGATGTCTGGATTGACGTA 60.159 50.000 0.00 0.00 39.64 3.57
976 2301 1.406069 GCTGGATGTCTGGATTGACGT 60.406 52.381 0.00 0.00 39.64 4.34
977 2302 1.293924 GCTGGATGTCTGGATTGACG 58.706 55.000 0.00 0.00 39.64 4.35
978 2303 2.286872 CTGCTGGATGTCTGGATTGAC 58.713 52.381 0.00 0.00 37.47 3.18
979 2304 1.911357 ACTGCTGGATGTCTGGATTGA 59.089 47.619 0.00 0.00 0.00 2.57
980 2305 2.093075 AGACTGCTGGATGTCTGGATTG 60.093 50.000 0.00 0.00 41.40 2.67
981 2306 2.170187 GAGACTGCTGGATGTCTGGATT 59.830 50.000 0.09 0.00 42.79 3.01
982 2307 1.761784 GAGACTGCTGGATGTCTGGAT 59.238 52.381 0.09 0.00 42.79 3.41
983 2308 1.189752 GAGACTGCTGGATGTCTGGA 58.810 55.000 0.09 0.00 42.79 3.86
996 2321 2.034685 TGGACACGAAACTGAGAGACTG 59.965 50.000 0.00 0.00 0.00 3.51
1012 2337 1.132977 TCCCCTGTCTGTACTTGGACA 60.133 52.381 13.24 13.24 39.71 4.02
1016 2341 1.270907 AGCTCCCCTGTCTGTACTTG 58.729 55.000 0.00 0.00 0.00 3.16
1017 2342 2.921834 TAGCTCCCCTGTCTGTACTT 57.078 50.000 0.00 0.00 0.00 2.24
1035 2367 2.579657 CGCCGGCCTGGTCCATATA 61.580 63.158 23.46 0.00 41.21 0.86
1178 2522 7.448469 TCTCAAGAAAAGAAAATCTTACTGGGG 59.552 37.037 0.00 0.00 35.27 4.96
1222 3756 3.246226 GCATCTTACTAACATGGTCGCAG 59.754 47.826 0.00 0.00 0.00 5.18
1228 3762 4.887748 AGATCCGCATCTTACTAACATGG 58.112 43.478 0.00 0.00 35.67 3.66
1635 5170 1.273887 GGTTGATGAAGATCGCGCG 59.726 57.895 26.76 26.76 0.00 6.86
1748 6965 0.537188 ATCTCGCGGGTCAAGATGTT 59.463 50.000 5.57 0.00 0.00 2.71
1749 6966 0.103208 GATCTCGCGGGTCAAGATGT 59.897 55.000 5.57 0.00 30.04 3.06
1752 7026 0.385751 GATGATCTCGCGGGTCAAGA 59.614 55.000 5.57 0.29 0.00 3.02
1971 8311 4.574674 ATCTGAATGTGAAAGGGTAGCA 57.425 40.909 0.00 0.00 0.00 3.49
2003 8405 1.397693 CGCAGCTTATAATCGCAGTGC 60.398 52.381 4.58 4.58 0.00 4.40
2077 9181 1.000896 CCACCATGTTCCTCACCCC 60.001 63.158 0.00 0.00 0.00 4.95
2122 9226 1.450312 GGCTCTTGTACGCCAGCAT 60.450 57.895 10.79 0.00 45.59 3.79
2242 9346 3.182572 CGATTAAGTGATGGCGCTTACTC 59.817 47.826 7.64 0.00 44.36 2.59
2249 9353 3.183172 CACAGATCGATTAAGTGATGGCG 59.817 47.826 16.22 0.00 32.14 5.69
2254 9358 6.545508 CAATTTGCACAGATCGATTAAGTGA 58.454 36.000 22.11 8.31 32.14 3.41
2276 9409 2.346803 GAGTTCATACTCGGCTTGCAA 58.653 47.619 0.00 0.00 41.28 4.08
2286 9419 4.537751 TCAGAATCCCGAGAGTTCATACT 58.462 43.478 0.00 0.00 37.31 2.12
2289 9422 3.963374 TCATCAGAATCCCGAGAGTTCAT 59.037 43.478 0.00 0.00 0.00 2.57
2291 9424 3.712187 GTCATCAGAATCCCGAGAGTTC 58.288 50.000 0.00 0.00 0.00 3.01
2309 9442 1.544537 CCAAACTCATTGTCCCCGTCA 60.545 52.381 0.00 0.00 37.32 4.35
2315 9448 1.620822 ACCTGCCAAACTCATTGTCC 58.379 50.000 0.00 0.00 37.32 4.02
2351 9484 2.626840 GAGCTGAACACCTTCTCATCC 58.373 52.381 0.00 0.00 0.00 3.51
2407 9542 1.550524 CCTTCATCGTCTCCTCCAACA 59.449 52.381 0.00 0.00 0.00 3.33
2462 9597 0.179936 ACCATAGCCAAGCTCAGCTC 59.820 55.000 13.30 0.00 38.25 4.09
2484 9619 9.689976 TGCATGGGTAAAATTATTTATTCGATG 57.310 29.630 0.00 0.00 33.76 3.84
2485 9620 9.912634 CTGCATGGGTAAAATTATTTATTCGAT 57.087 29.630 0.00 0.00 33.76 3.59
2486 9621 8.356657 CCTGCATGGGTAAAATTATTTATTCGA 58.643 33.333 0.00 0.00 33.76 3.71
2512 9647 0.818040 GATTGCCCACGGGTACATCC 60.818 60.000 3.54 0.00 37.65 3.51
2513 9648 0.818040 GGATTGCCCACGGGTACATC 60.818 60.000 3.54 5.60 37.65 3.06
2514 9649 1.226262 GGATTGCCCACGGGTACAT 59.774 57.895 3.54 0.00 37.65 2.29
2516 9651 2.672295 TGGATTGCCCACGGGTAC 59.328 61.111 3.54 0.00 40.82 3.34
2523 9658 1.519751 CGAAAACGGTGGATTGCCCA 61.520 55.000 0.00 0.00 44.25 5.36
2525 9660 0.109919 GACGAAAACGGTGGATTGCC 60.110 55.000 0.00 0.00 0.00 4.52
2529 9664 2.536761 TCTTGACGAAAACGGTGGAT 57.463 45.000 0.00 0.00 0.00 3.41
2531 9666 1.463444 GGATCTTGACGAAAACGGTGG 59.537 52.381 0.00 0.00 0.00 4.61
2533 9668 1.269936 ACGGATCTTGACGAAAACGGT 60.270 47.619 0.00 0.00 0.00 4.83
2534 9669 1.126113 CACGGATCTTGACGAAAACGG 59.874 52.381 0.00 0.00 0.00 4.44
2535 9670 2.055838 TCACGGATCTTGACGAAAACG 58.944 47.619 0.00 0.00 0.00 3.60
2536 9671 3.120649 CCTTCACGGATCTTGACGAAAAC 60.121 47.826 0.00 0.00 33.16 2.43
2537 9672 3.064207 CCTTCACGGATCTTGACGAAAA 58.936 45.455 0.00 0.00 33.16 2.29
2539 9674 1.616865 ACCTTCACGGATCTTGACGAA 59.383 47.619 0.00 0.00 36.31 3.85
2540 9675 1.254026 ACCTTCACGGATCTTGACGA 58.746 50.000 0.00 0.00 36.31 4.20
2543 9678 6.942976 AGTATAAAACCTTCACGGATCTTGA 58.057 36.000 0.00 0.00 36.31 3.02
2544 9679 7.611213 AAGTATAAAACCTTCACGGATCTTG 57.389 36.000 0.00 0.00 36.31 3.02
2546 9681 8.537858 AGTAAAGTATAAAACCTTCACGGATCT 58.462 33.333 0.00 0.00 36.31 2.75
2547 9682 8.713737 AGTAAAGTATAAAACCTTCACGGATC 57.286 34.615 0.00 0.00 36.31 3.36
2548 9683 9.813446 CTAGTAAAGTATAAAACCTTCACGGAT 57.187 33.333 0.00 0.00 36.31 4.18
2560 9695 9.595823 GCAACTGGTCATCTAGTAAAGTATAAA 57.404 33.333 0.00 0.00 34.34 1.40
2562 9697 7.423199 CGCAACTGGTCATCTAGTAAAGTATA 58.577 38.462 0.00 0.00 34.34 1.47
2563 9698 6.273825 CGCAACTGGTCATCTAGTAAAGTAT 58.726 40.000 0.00 0.00 34.34 2.12
2564 9699 5.647589 CGCAACTGGTCATCTAGTAAAGTA 58.352 41.667 0.00 0.00 34.34 2.24
2567 9702 3.259064 GCGCAACTGGTCATCTAGTAAA 58.741 45.455 0.30 0.00 34.34 2.01
2568 9703 2.418197 GGCGCAACTGGTCATCTAGTAA 60.418 50.000 10.83 0.00 34.34 2.24
2930 10560 5.312895 TGCATAATAGTGTTGTTCAGTGGT 58.687 37.500 0.00 0.00 0.00 4.16
2996 10626 2.362077 GCCTTGACTCCAAAGCTTCAAA 59.638 45.455 0.00 0.00 36.91 2.69
3108 10810 2.621055 CCCAGGTCGTTCAACATTTTCA 59.379 45.455 0.00 0.00 0.00 2.69
3144 10846 3.986006 GCGTCACCAGGTCACCGA 61.986 66.667 6.31 0.00 0.00 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.