Multiple sequence alignment - TraesCS7D01G390800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G390800 chr7D 100.000 4696 0 0 1 4696 506108564 506113259 0.000000e+00 8672.0
1 TraesCS7D01G390800 chr7D 95.000 900 26 7 3800 4696 506122854 506123737 0.000000e+00 1395.0
2 TraesCS7D01G390800 chr7D 74.593 307 70 6 4386 4691 602074010 602074309 1.370000e-25 128.0
3 TraesCS7D01G390800 chr7B 93.158 3683 198 22 1030 4696 534018529 534022173 0.000000e+00 5356.0
4 TraesCS7D01G390800 chr7A 96.180 1335 48 1 2791 4125 573455177 573456508 0.000000e+00 2180.0
5 TraesCS7D01G390800 chr7A 92.498 1053 65 3 1 1039 719822654 719821602 0.000000e+00 1495.0
6 TraesCS7D01G390800 chr7A 95.524 782 31 3 1027 1804 573453264 573454045 0.000000e+00 1247.0
7 TraesCS7D01G390800 chr7A 87.571 877 72 12 1829 2697 573454325 573455172 0.000000e+00 981.0
8 TraesCS7D01G390800 chr7A 87.761 335 25 7 4058 4387 573456800 573457123 1.230000e-100 377.0
9 TraesCS7D01G390800 chr7A 100.000 36 0 0 4027 4062 573456510 573456545 3.030000e-07 67.6
10 TraesCS7D01G390800 chr2D 93.994 1049 47 5 1 1033 649391891 649392939 0.000000e+00 1574.0
11 TraesCS7D01G390800 chr2D 92.437 1071 40 16 1 1035 518021270 518020205 0.000000e+00 1491.0
12 TraesCS7D01G390800 chr2D 80.620 387 30 21 3305 3674 50120109 50120467 1.680000e-64 257.0
13 TraesCS7D01G390800 chr2D 82.746 284 18 13 2186 2439 50119397 50119679 1.700000e-54 224.0
14 TraesCS7D01G390800 chr3D 92.797 1069 43 13 1 1035 376167226 376166158 0.000000e+00 1517.0
15 TraesCS7D01G390800 chr3D 96.081 740 14 4 1 725 11572328 11573067 0.000000e+00 1192.0
16 TraesCS7D01G390800 chr4D 92.708 1056 48 13 1 1033 97506063 97505014 0.000000e+00 1496.0
17 TraesCS7D01G390800 chr4D 92.664 1036 51 11 1 1033 383893921 383894934 0.000000e+00 1469.0
18 TraesCS7D01G390800 chr4D 92.110 1052 61 9 1 1033 388819665 388820713 0.000000e+00 1463.0
19 TraesCS7D01G390800 chr4D 71.729 428 102 14 4273 4696 129755717 129756129 8.310000e-18 102.0
20 TraesCS7D01G390800 chr6B 92.653 1048 60 6 1 1033 695471765 695472810 0.000000e+00 1493.0
21 TraesCS7D01G390800 chr6B 78.226 124 26 1 4572 4695 641909098 641909220 1.400000e-10 78.7
22 TraesCS7D01G390800 chr6D 92.437 1071 37 18 1 1035 346274080 346273018 0.000000e+00 1489.0
23 TraesCS7D01G390800 chr6D 93.667 979 45 6 72 1033 283773035 283772057 0.000000e+00 1448.0
24 TraesCS7D01G390800 chr5D 92.250 1071 44 12 1 1037 331546660 331545595 0.000000e+00 1482.0
25 TraesCS7D01G390800 chr5D 92.711 439 10 6 1 417 407960949 407961387 8.640000e-172 614.0
26 TraesCS7D01G390800 chr5D 78.571 112 18 4 4572 4680 545301331 545301439 8.430000e-08 69.4
27 TraesCS7D01G390800 chr4A 92.235 1056 58 8 1 1035 739880649 739879597 0.000000e+00 1474.0
28 TraesCS7D01G390800 chr5B 92.023 1053 60 8 2 1033 511345235 511346284 0.000000e+00 1458.0
29 TraesCS7D01G390800 chr5B 72.619 252 57 9 4441 4689 615453250 615453008 6.520000e-09 73.1
30 TraesCS7D01G390800 chr1D 91.503 1071 47 16 1 1035 275722953 275724015 0.000000e+00 1434.0
31 TraesCS7D01G390800 chr2B 80.989 263 25 6 3910 4147 77901947 77902209 8.020000e-43 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G390800 chr7D 506108564 506113259 4695 False 8672.00 8672 100.0000 1 4696 1 chr7D.!!$F1 4695
1 TraesCS7D01G390800 chr7D 506122854 506123737 883 False 1395.00 1395 95.0000 3800 4696 1 chr7D.!!$F2 896
2 TraesCS7D01G390800 chr7B 534018529 534022173 3644 False 5356.00 5356 93.1580 1030 4696 1 chr7B.!!$F1 3666
3 TraesCS7D01G390800 chr7A 719821602 719822654 1052 True 1495.00 1495 92.4980 1 1039 1 chr7A.!!$R1 1038
4 TraesCS7D01G390800 chr7A 573453264 573457123 3859 False 970.52 2180 93.4072 1027 4387 5 chr7A.!!$F1 3360
5 TraesCS7D01G390800 chr2D 649391891 649392939 1048 False 1574.00 1574 93.9940 1 1033 1 chr2D.!!$F1 1032
6 TraesCS7D01G390800 chr2D 518020205 518021270 1065 True 1491.00 1491 92.4370 1 1035 1 chr2D.!!$R1 1034
7 TraesCS7D01G390800 chr2D 50119397 50120467 1070 False 240.50 257 81.6830 2186 3674 2 chr2D.!!$F2 1488
8 TraesCS7D01G390800 chr3D 376166158 376167226 1068 True 1517.00 1517 92.7970 1 1035 1 chr3D.!!$R1 1034
9 TraesCS7D01G390800 chr3D 11572328 11573067 739 False 1192.00 1192 96.0810 1 725 1 chr3D.!!$F1 724
10 TraesCS7D01G390800 chr4D 97505014 97506063 1049 True 1496.00 1496 92.7080 1 1033 1 chr4D.!!$R1 1032
11 TraesCS7D01G390800 chr4D 383893921 383894934 1013 False 1469.00 1469 92.6640 1 1033 1 chr4D.!!$F2 1032
12 TraesCS7D01G390800 chr4D 388819665 388820713 1048 False 1463.00 1463 92.1100 1 1033 1 chr4D.!!$F3 1032
13 TraesCS7D01G390800 chr6B 695471765 695472810 1045 False 1493.00 1493 92.6530 1 1033 1 chr6B.!!$F2 1032
14 TraesCS7D01G390800 chr6D 346273018 346274080 1062 True 1489.00 1489 92.4370 1 1035 1 chr6D.!!$R2 1034
15 TraesCS7D01G390800 chr6D 283772057 283773035 978 True 1448.00 1448 93.6670 72 1033 1 chr6D.!!$R1 961
16 TraesCS7D01G390800 chr5D 331545595 331546660 1065 True 1482.00 1482 92.2500 1 1037 1 chr5D.!!$R1 1036
17 TraesCS7D01G390800 chr4A 739879597 739880649 1052 True 1474.00 1474 92.2350 1 1035 1 chr4A.!!$R1 1034
18 TraesCS7D01G390800 chr5B 511345235 511346284 1049 False 1458.00 1458 92.0230 2 1033 1 chr5B.!!$F1 1031
19 TraesCS7D01G390800 chr1D 275722953 275724015 1062 False 1434.00 1434 91.5030 1 1035 1 chr1D.!!$F1 1034

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
937 1007 0.531090 GACGCATGGCCACCGTATAA 60.531 55.0 27.24 0.00 35.06 0.98 F
1851 2196 0.170339 GAGGGTTGTTGCATTACGGC 59.830 55.0 0.00 0.00 0.00 5.68 F
2093 2445 0.326927 TTTTGGGGAAGTAGGGAGCG 59.673 55.0 0.00 0.00 0.00 5.03 F
2649 3032 0.749091 TTCATGGCTGCCAATCTCCG 60.749 55.0 27.24 10.02 36.95 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2777 3222 0.179045 AATCCAGCGATAGTGCCCAC 60.179 55.000 0.0 0.0 39.35 4.61 R
2834 3279 1.202818 GCTTGGTTGAAGTCTCCTGGT 60.203 52.381 0.0 0.0 33.73 4.00 R
3008 3453 1.372997 AGCAGCGAAATCACGACGT 60.373 52.632 0.0 0.0 35.09 4.34 R
4170 4999 0.454600 GAGCTGACGGAATGGTACGA 59.545 55.000 0.0 0.0 0.00 3.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
245 260 1.938585 AGGATGTGAGGGACGAGAAA 58.061 50.000 0.00 0.00 0.00 2.52
570 586 1.606531 GCCAGGCAGAAGGAGATGT 59.393 57.895 6.55 0.00 0.00 3.06
572 588 1.747709 CCAGGCAGAAGGAGATGTTG 58.252 55.000 0.00 0.00 0.00 3.33
743 804 4.322057 ACTATTCATTTTGGAGGCTGGT 57.678 40.909 0.00 0.00 0.00 4.00
793 855 3.755628 GGACGTGTAGGCCGCTGA 61.756 66.667 0.00 0.00 38.99 4.26
892 961 1.399714 AATAGACGCGGACAGGATGA 58.600 50.000 12.47 0.00 39.69 2.92
937 1007 0.531090 GACGCATGGCCACCGTATAA 60.531 55.000 27.24 0.00 35.06 0.98
948 1018 1.135199 CACCGTATAACAGGACACGCT 60.135 52.381 0.00 0.00 33.19 5.07
987 1057 5.630415 TCCCTACCTAAATGGACAGAATG 57.370 43.478 0.00 0.00 40.34 2.67
1005 1075 3.585748 ATGCGAATAAAACGGATGTCG 57.414 42.857 0.00 0.00 39.96 4.35
1169 1255 4.038080 GCGGCCCACCAGAAAACG 62.038 66.667 0.00 0.00 34.57 3.60
1506 1593 1.000506 GTAGAGGGAAACGTGCTCACA 59.999 52.381 3.24 0.00 0.00 3.58
1518 1605 1.878522 GCTCACATCCTGCGTACGG 60.879 63.158 18.39 0.38 0.00 4.02
1596 1684 0.954452 CCTTGTTGCAGGAGGTGAAC 59.046 55.000 4.43 0.00 35.71 3.18
1681 1771 1.670967 GCTGTTACGCGTAGAACCCTT 60.671 52.381 19.61 0.00 0.00 3.95
1731 1821 6.318648 TGTTCAGTAGTTTCTGCAACTTTCAT 59.681 34.615 0.00 0.00 43.89 2.57
1767 1857 1.028905 TTGACGTTTTGCTTGGGAGG 58.971 50.000 0.00 0.00 0.00 4.30
1806 1896 5.128008 TCGGTTTCTTGTTTTCCCTTCAAAT 59.872 36.000 0.00 0.00 0.00 2.32
1807 1897 6.321690 TCGGTTTCTTGTTTTCCCTTCAAATA 59.678 34.615 0.00 0.00 0.00 1.40
1851 2196 0.170339 GAGGGTTGTTGCATTACGGC 59.830 55.000 0.00 0.00 0.00 5.68
1881 2226 1.198637 GTGCCAAGTTGTCAGCTCATC 59.801 52.381 1.45 0.00 0.00 2.92
1888 2233 4.679373 AGTTGTCAGCTCATCGGATAAT 57.321 40.909 0.00 0.00 0.00 1.28
1905 2250 5.878116 CGGATAATGTTTTGGGTAGTTCAGA 59.122 40.000 0.00 0.00 0.00 3.27
1910 2255 5.319043 TGTTTTGGGTAGTTCAGAAGGAT 57.681 39.130 0.00 0.00 0.00 3.24
1962 2307 7.581213 TTGAGCCTTTTTCTTCTGATTTACA 57.419 32.000 0.00 0.00 0.00 2.41
1999 2345 7.872113 AATTATCTTCAGTGGAATCCTCAAC 57.128 36.000 0.00 0.00 31.34 3.18
2035 2387 7.607607 TCTTCATTGCTTTTTAGTCATAGAGCA 59.392 33.333 0.00 0.00 38.26 4.26
2040 2392 5.649395 TGCTTTTTAGTCATAGAGCATTGCT 59.351 36.000 11.79 11.79 43.88 3.91
2063 2415 7.052873 GCTGCATAGTGGATTAAGGATATGAT 58.947 38.462 0.00 0.00 0.00 2.45
2093 2445 0.326927 TTTTGGGGAAGTAGGGAGCG 59.673 55.000 0.00 0.00 0.00 5.03
2200 2555 2.228059 CATTGCCTCCATAGCCTTCAG 58.772 52.381 0.00 0.00 0.00 3.02
2279 2640 7.744059 TGTGCATATTCAAATGATTTTGCTTG 58.256 30.769 16.17 0.00 41.66 4.01
2291 2656 8.673626 AATGATTTTGCTTGATTTACGTACTG 57.326 30.769 0.00 0.00 0.00 2.74
2372 2748 3.020984 TGCCGATAACCCAAAAGAATCC 58.979 45.455 0.00 0.00 0.00 3.01
2390 2766 9.579932 AAAGAATCCTCAACAGTAAAGAGATTT 57.420 29.630 0.00 0.00 0.00 2.17
2504 2887 9.577110 CAATGATGCTTAACATTTAGTGTGAAT 57.423 29.630 0.00 0.00 41.14 2.57
2531 2914 9.632638 AAGCATCAGTATGGTAATTTATCTGTT 57.367 29.630 0.00 0.00 42.93 3.16
2566 2949 2.095853 CGCATCAAACAACTAATCGGCT 59.904 45.455 0.00 0.00 0.00 5.52
2609 2992 9.683069 CCTCAATTAATATTACCAATTGCTGAC 57.317 33.333 13.76 0.00 38.79 3.51
2649 3032 0.749091 TTCATGGCTGCCAATCTCCG 60.749 55.000 27.24 10.02 36.95 4.63
2769 3214 5.864418 TGAAAGCCTTATACTGATACGGT 57.136 39.130 0.00 0.00 31.03 4.83
2777 3222 7.122353 AGCCTTATACTGATACGGTAATACCTG 59.878 40.741 7.95 4.02 35.66 4.00
2788 3233 3.554337 CGGTAATACCTGTGGGCACTATC 60.554 52.174 7.95 0.00 35.66 2.08
2834 3279 2.831526 TCAACTGGTCGATCCATCAAGA 59.168 45.455 7.11 2.41 46.12 3.02
3008 3453 2.312390 GTGGTTCCCAAAGCTAAACCA 58.688 47.619 11.38 11.38 46.65 3.67
3218 3663 7.141758 AGAGATGGATAGGTATTTGAAGCAA 57.858 36.000 0.00 0.00 0.00 3.91
3255 3704 4.984295 TGTTGAACAGGAATCCAATCTGA 58.016 39.130 0.61 0.00 33.19 3.27
3431 3890 1.003118 TGTAGGTGATGTGGGTCAAGC 59.997 52.381 0.00 0.00 0.00 4.01
3468 3927 5.177696 ACAAGATAGCACGAAACTGAAACTC 59.822 40.000 0.00 0.00 0.00 3.01
3544 4003 7.284034 AGGTAATTGCAGTTCAAATATCTGGAG 59.716 37.037 0.00 0.00 38.34 3.86
3579 4038 4.573201 CCCGAGTTTGTTCAGAACTGTAAA 59.427 41.667 14.51 4.26 37.46 2.01
3605 4064 2.507484 TGGATGCTTTCACTTCAGGTG 58.493 47.619 0.00 0.00 46.60 4.00
3667 4131 0.667184 CAAAGCCAAATGCCCACGAC 60.667 55.000 0.00 0.00 42.71 4.34
3699 4163 4.554723 GCAGACGTCAAAAGCAGTAACATT 60.555 41.667 19.50 0.00 0.00 2.71
3702 4166 5.989777 AGACGTCAAAAGCAGTAACATTACT 59.010 36.000 19.50 0.00 44.42 2.24
3890 4357 5.656416 TCTGAAGAGGTTTTGTTTGGTCATT 59.344 36.000 0.00 0.00 0.00 2.57
3990 4457 9.162793 GAGAATTGATGTATTTAGCATTGTTCG 57.837 33.333 0.00 0.00 0.00 3.95
4078 4548 1.308998 ACTTTGTTGTCTGGCTTCGG 58.691 50.000 0.00 0.00 0.00 4.30
4108 4937 2.011222 TCCAACTGAAACACCACGAAC 58.989 47.619 0.00 0.00 0.00 3.95
4111 4940 1.663695 ACTGAAACACCACGAACCAG 58.336 50.000 0.00 0.00 0.00 4.00
4142 4971 5.126384 ACTTCTTTAGGATTGAGTCTCGAGG 59.874 44.000 13.56 0.00 0.00 4.63
4170 4999 0.917533 ACCATTCAGGCAGCTCAGAT 59.082 50.000 0.00 0.00 43.14 2.90
4180 5009 2.131183 GCAGCTCAGATCGTACCATTC 58.869 52.381 0.00 0.00 0.00 2.67
4183 5012 1.067212 GCTCAGATCGTACCATTCCGT 59.933 52.381 0.00 0.00 0.00 4.69
4191 5020 1.403647 CGTACCATTCCGTCAGCTCAA 60.404 52.381 0.00 0.00 0.00 3.02
4201 5030 3.726517 CAGCTCAAACCGTGCCCG 61.727 66.667 0.00 0.00 34.56 6.13
4226 5060 1.481772 AGCACAACAAGGTTTGCACAT 59.518 42.857 14.15 0.00 37.44 3.21
4237 5071 6.435277 ACAAGGTTTGCACATATCTTGATTCT 59.565 34.615 17.43 0.00 36.45 2.40
4270 5104 7.497595 ACTGTGTTAATGTTGACTGAGAGTTA 58.502 34.615 0.00 0.00 0.00 2.24
4271 5105 8.150945 ACTGTGTTAATGTTGACTGAGAGTTAT 58.849 33.333 0.00 0.00 0.00 1.89
4305 5139 6.974932 AAGCACTCACTCTATTACATGTTG 57.025 37.500 2.30 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
245 260 1.363807 GTCCTTGCTTTGCCGCTTT 59.636 52.632 0.00 0.00 0.00 3.51
793 855 3.240134 ATCACGCCGGCAACAGAGT 62.240 57.895 28.98 12.36 0.00 3.24
892 961 3.149648 GGCCGCATCCATTTGCCT 61.150 61.111 0.00 0.00 39.52 4.75
937 1007 2.910479 TGTCCGAGCGTGTCCTGT 60.910 61.111 0.00 0.00 0.00 4.00
948 1018 1.294138 GATTTGGGGTCGTGTCCGA 59.706 57.895 0.00 0.00 41.73 4.55
987 1057 1.662122 ACCGACATCCGTTTTATTCGC 59.338 47.619 0.00 0.00 36.31 4.70
1005 1075 2.604174 CCACGTGCGACTCCAAACC 61.604 63.158 10.91 0.00 0.00 3.27
1012 1087 2.029073 CCAACTCCACGTGCGACT 59.971 61.111 10.91 0.00 0.00 4.18
1482 1568 0.896226 GCACGTTTCCCTCTACCTCT 59.104 55.000 0.00 0.00 0.00 3.69
1506 1593 1.754803 TGAATCTTCCGTACGCAGGAT 59.245 47.619 10.49 3.35 37.65 3.24
1596 1684 3.019003 AAGACCGGCCCACATCTCG 62.019 63.158 0.00 0.00 0.00 4.04
1632 1720 0.034896 TCACCTCCAGAAGAAACCGC 59.965 55.000 0.00 0.00 0.00 5.68
1690 1780 1.885887 GAACAGTGCTACAATGGGCAA 59.114 47.619 4.92 0.00 40.26 4.52
1731 1821 1.702401 TCAAACAGGACATGGGCACTA 59.298 47.619 0.00 0.00 0.00 2.74
1767 1857 1.534729 ACCGAATCAACTTCCAAGCC 58.465 50.000 0.00 0.00 0.00 4.35
1806 1896 3.052793 AGCTAGCACTAGAACCTCCCTTA 60.053 47.826 18.83 0.00 35.21 2.69
1807 1897 2.112190 GCTAGCACTAGAACCTCCCTT 58.888 52.381 10.63 0.00 35.21 3.95
1881 2226 5.878116 TCTGAACTACCCAAAACATTATCCG 59.122 40.000 0.00 0.00 0.00 4.18
1888 2233 4.781775 TCCTTCTGAACTACCCAAAACA 57.218 40.909 0.00 0.00 0.00 2.83
1905 2250 9.881773 AATACCCATGTCAACAATATAATCCTT 57.118 29.630 0.00 0.00 0.00 3.36
2015 2367 6.151648 AGCAATGCTCTATGACTAAAAAGCAA 59.848 34.615 0.00 0.00 42.41 3.91
2021 2373 4.516323 TGCAGCAATGCTCTATGACTAAA 58.484 39.130 4.03 0.00 36.40 1.85
2024 2376 2.704464 TGCAGCAATGCTCTATGACT 57.296 45.000 4.03 0.00 36.40 3.41
2033 2385 4.543692 CTTAATCCACTATGCAGCAATGC 58.456 43.478 0.00 0.00 0.00 3.56
2035 2387 5.052693 TCCTTAATCCACTATGCAGCAAT 57.947 39.130 0.00 0.00 0.00 3.56
2040 2392 7.825761 CACATCATATCCTTAATCCACTATGCA 59.174 37.037 0.00 0.00 0.00 3.96
2063 2415 6.492087 CCTACTTCCCCAAAAATAGAAACACA 59.508 38.462 0.00 0.00 0.00 3.72
2076 2428 0.545787 TTCGCTCCCTACTTCCCCAA 60.546 55.000 0.00 0.00 0.00 4.12
2093 2445 2.094338 CCCCTTTTCTGCAATCTGCTTC 60.094 50.000 0.00 0.00 45.31 3.86
2372 2748 9.057089 ACTTACCAAAATCTCTTTACTGTTGAG 57.943 33.333 0.00 0.00 0.00 3.02
2390 2766 3.362706 AGAGGATCGTGCTACTTACCAA 58.637 45.455 0.00 0.00 42.67 3.67
2505 2888 9.632638 AACAGATAAATTACCATACTGATGCTT 57.367 29.630 0.00 0.00 0.00 3.91
2535 2918 9.651913 ATTAGTTGTTTGATGCGGAAAATAAAT 57.348 25.926 0.00 0.00 0.00 1.40
2566 2949 9.650714 TTAATTGAGGGTATAGCTCAGTACTAA 57.349 33.333 0.00 0.00 0.00 2.24
2649 3032 0.875059 AGCTTGCACTTAAGTTCGGC 59.125 50.000 5.07 9.79 0.00 5.54
2769 3214 2.036733 GCGATAGTGCCCACAGGTATTA 59.963 50.000 0.82 0.00 39.35 0.98
2777 3222 0.179045 AATCCAGCGATAGTGCCCAC 60.179 55.000 0.00 0.00 39.35 4.61
2788 3233 2.693069 CAAGCTCCCTATAATCCAGCG 58.307 52.381 0.00 0.00 35.14 5.18
2834 3279 1.202818 GCTTGGTTGAAGTCTCCTGGT 60.203 52.381 0.00 0.00 33.73 4.00
3008 3453 1.372997 AGCAGCGAAATCACGACGT 60.373 52.632 0.00 0.00 35.09 4.34
3149 3594 4.501921 GTCTTACGTTCGTCAACAAGAACT 59.498 41.667 0.00 0.00 43.15 3.01
3218 3663 6.151648 CCTGTTCAACATCTATGTCAACCAAT 59.848 38.462 12.13 0.00 40.80 3.16
3431 3890 3.181493 GCTATCTTGTCCCTTGTTGCATG 60.181 47.826 0.00 0.00 0.00 4.06
3468 3927 4.761910 ATCGATTGAACTTTCATCGACG 57.238 40.909 19.47 11.73 43.15 5.12
3544 4003 4.678622 ACAAACTCGGGAAATTTTGACAC 58.321 39.130 3.36 0.00 33.90 3.67
3579 4038 5.359009 CCTGAAGTGAAAGCATCCATGTTAT 59.641 40.000 0.00 0.00 0.00 1.89
3605 4064 6.404734 CCTTGAAAGCCTTCACCATATTGTAC 60.405 42.308 0.00 0.00 41.34 2.90
3667 4131 1.497991 TTGACGTCTGCTCCTTTTCG 58.502 50.000 17.92 0.00 0.00 3.46
3734 4198 3.701542 CTGAGTCAGCAACCCAGATAGTA 59.298 47.826 7.33 0.00 0.00 1.82
3735 4199 2.499289 CTGAGTCAGCAACCCAGATAGT 59.501 50.000 7.33 0.00 0.00 2.12
3736 4200 3.176552 CTGAGTCAGCAACCCAGATAG 57.823 52.381 7.33 0.00 0.00 2.08
3890 4357 3.558958 GGGGTAGTGTAAAAGGCCGTTTA 60.559 47.826 18.47 18.47 0.00 2.01
4078 4548 4.504097 GTGTTTCAGTTGGAGCACATTTTC 59.496 41.667 2.89 0.00 35.02 2.29
4108 4937 4.008074 TCCTAAAGAAGTCAACTGCTGG 57.992 45.455 0.00 0.00 30.56 4.85
4111 4940 5.703130 ACTCAATCCTAAAGAAGTCAACTGC 59.297 40.000 0.00 0.00 0.00 4.40
4142 4971 1.339055 TGCCTGAATGGTACTGTCTGC 60.339 52.381 0.00 0.00 38.35 4.26
4170 4999 0.454600 GAGCTGACGGAATGGTACGA 59.545 55.000 0.00 0.00 0.00 3.43
4180 5009 2.954753 GCACGGTTTGAGCTGACGG 61.955 63.158 0.00 0.00 0.00 4.79
4183 5012 2.281484 GGGCACGGTTTGAGCTGA 60.281 61.111 0.00 0.00 34.26 4.26
4201 5030 1.111277 AAACCTTGTTGTGCTGGTCC 58.889 50.000 0.00 0.00 31.64 4.46
4226 5060 6.127338 ACACAGTCCGATTCAGAATCAAGATA 60.127 38.462 20.87 0.98 37.78 1.98
4237 5071 5.178623 GTCAACATTAACACAGTCCGATTCA 59.821 40.000 0.00 0.00 0.00 2.57
4280 5114 7.331934 TCAACATGTAATAGAGTGAGTGCTTTC 59.668 37.037 0.00 0.00 0.00 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.